>input_sequence_46010
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-----------------------------------------------------------------------------ATG
ATAAAAAGTTTCGCCGCGCTTTCCGTGATTCTTTTCAGCTTGAAACAAACTATTCTCGCGGAAGCTTAACCATTCCCTCC
CTTACATCTGAGCAGAGCAGGCGAAAAGGCAGCACTGCGTGGCTCGCGACTTGACGGTGGAGGAACGATCAATGGCCAAG
CCGGCTCCGACTAAGAACGCCGGCGACGCAGCAACGGCGGTGGTGCCAGTGCCGAGTCCGTTCGAGTACCATGTCTATGG
CCCCCGCAAGCTGTCCTTCACCAGCTGGAGAGATCTTCTTAGCTCAAGCTGGTCAGTGCTCCGTAATCCGTATGCGTTTG
TTA---------------------------CACCTGGACGAGTGCATGATTTGCATTGCACATTCGCGTAGCTTCACCCG
AAAAAAAAAGCTTTACCGGGAG-TTGTTGCGATGGTT-GATGCAGGAAGAACCCTGACTACCGGCGGATGGTGATCGCGT
GCTTCATCCAGGGGGCGTACCTGCTGGAGCTGGACCGGCAGGAGAAGCGGGACGAGCGCACCAGCCTCGCGCCGCAGTGG
TGGCGCCCGTTCAAGTACAGGCTGGTCCAGGCGCTCGTCGACGAGCGCGACGGCTCCATCTACGGCGCCGTCCTCGAGTG
GGACCGCCAGGCCGCGCTCTCGGACTACATCCCGTTCCGGCCCACCCGCGCGCCCGCCGCCGTCGTGGCGCTGCGCGGCA
CGCTGCTCAAGGCGCCCACGTTCCGCCGCGACGTCGTCGACGACCTCCGCTTCCTGGCCTGGGACAGCCTCAAGGGCTCC
GTGCGCTTCGCCGGCGCGCTGGCGGCGCTGCGGGCGGCCGCGCGCAAGTTCGGCGTCGCCAACGTGTGCGTGGGCGGGCA
CTCGCTGGGCGCCGGGTTCGCGCTGCAGGTGGGCAAGGCGCTGGCCAAGGAGGGCGTCTTCGTGGAGTGCCACGTGTTCA
ACCCGCCGTCCGTGTCGCTGGTCATGAGCCTCAAGGGCTTCGCCGAGACGGCCGGCGAGCTGTGGGGCCGCGTGCGCGCT
TGGATACCCTACATGGGCACCCAAGCCGGCGGGGACGC------GGGCGGCGG---CAGCAACAGCGAGAGCGAGGCCAA
GGCGTCGCTGGCGCGCGCCGGGATGGCCAAGTGGCTGCCGCACCTCTACATTAACACCAACGACTACATCTGCTGCTACT
ACAGCGACGCCGCGAGCGGGACGGCCACCGTGGCCGTCGGCAGCGGGGGCGGGAGCGGCACTAGCAAGGCCGGCGTGGCG
AGGATGGTGGTTGTTTCCAAGGGGCCGAGCAAGTTCCTGGCCGCGCACGGGCTGGAGCAGTGGTGGGCTGACGATGTCGA
GCTGCAGGTGGCGCTCAACCACAGCAAACTCGTCGACCGCCAGCTCAGGTCGCTCTACGCCCCGCCACCAGCCGCACCAG
CCGCTCGGAGTTAGGCACGTGTGCCATGGTACTATTGACTTATTATCA-----TTGTTTTTTTTTTCGTTGAATGGTTAT
TGCCATTGTTGCTGTTCAT---------GTTGGGTCCTTGCGGCTGGGGTTAATGATGTGCCCAATTCT--TTTTTTACA
GACCCAATTTGACATATTGGTTTATACCCTCCCCGTCCCATAATATAAGATGTTTTTGCAGGCTATATTAACTTGCAAA-
--------ATTGTGGAACGGAAGAAGTACTAAATAAA-------------------------------------------
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>chr3B_1_TraesCS3B01G271100
TGCACGTTAAACTGTAACGCTTGGGGAATGTGGCCTTGTATGGAGAGACAGGGATACTGATACCCCAGGAGATGTGCAAA
GG--------TTGAGACCATAGTGTGAATCCAGCTAACCGTAGTCGTGTGATAAGGAGAGGCACCTCATTGATAATAAAC
TAGAAAGATTTTCCATGGTCCATGTTGCTCCAGCCTCCATGCATTCTCTTGAGTGGGAATGACAGTATTACAGTGTTACT
AGATTCAAATTTAAAACTGATGCTTTGTA---------------------------------------------------
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--------------------------GATCCCTTGGTTGCATACTATCACTACCAGATGGTACCAATGAATTTGCAGCCT
GAACGATTTTGTCTCCCTCTGAGAATAATATTTCTCAGGTCTTTGACTAACTTGCACCATGGCATGTCTGCAGGGAGGTT
CACGACGAAGTAAGTCAAGCAAGGCAGAAGGCTTCAACGATGAAACACCGGCGACAAGAGCAGGAGTCGGCTCGTAGAGA
GAAACTCAGGCAAGCTTTCCTCAAGAAGCGCCTTGATAAGTTGATGGCTGAAAAGCAGGCATCTTCGGCCAGTGATGACC
AACCAGTTAGCTAGTCGAGGTTTTGTATGTCTTGCAC--TTGTGCCCAGGTGGCAGTTGTTGTAGTTCATGCGATCACGG
TTCATGCAACTGCAAATGAGAAGATTTGTCTTGTTTGTGATTCCCTTGATCTGGCGAAATCAAATTCAGAAAATGGTCTT
TGCATGTACAGTCAC---------------------------GCAATGTAGAGGTAATTTGAATCTTACACTGACGAGGT
GTCTTGATCCTCGACTGATTTGCTGGGCGTTGGGCAGATTCCTGCAACCTTT-TTTTTTCTGCTTTTAGATGCTTCTCGT
CGAGGCCGAGCATATGACTGCCATCTCCATCTTAAGTTGGCGAATCGTGTGCGCCCAACTCTGGCTGTAATCCACCAGTT
CTAATTCAGCATGG--TACAGAGAGGAGAAAGAAGCATGTTCCATGCTACTCTGGTTGGATGATGGAATAAAGACCGATG
ATAAAAAGTTTCGCCGCGCTTTCCGTGATTCTTTTCAGCTTGAAACAAACTATTCTCGCGGAAGCTTAACCATTCCCTCC
CTTACATCTGAGCAGAGCAGGCGAAAAGGCAGCACTGCGTGGCTCGCGACTTGACGGTGGAGGAACGATCAATGGCCAAG
CCGGCTCCGACTAAGAACGCCGGCGACGCAGCAACGGCGGTGGTGCCAGTGCCGAGTCCGTTCGAGTACCATGTCTATGG
CCCCCGCAAGCTGTCCTTCACCAGCTGGAGAGATCTTCTTAGCTCAAGCTGGTCAGTGCTCCGTAATCCGTATGCGTTTG
TTA---------------------------CACCTGGACGAGTGCATGATTTGCATTGCACATTCGCGTAGCTTCACCCG
AAAAAAAAAGCTTTACCGGGAG-TTGTTGCGATGGTT-GATGCAGGAAGAACCCTGACTACCGGCGGATGGTGATCGCGT
GCTTCATCCAGGGGGCGTACCTGCTGGAGCTGGACCGGCAGGAGAAGCGGGACGAGCGCACCAGCCTCGCGCCGCAGTGG
TGGCGCCCGTTCAAGTACAGGCTGGTCCAGGCGCTCGTCGACGAGCGCGACGGCTCCATCTACGGCGCCGTCCTCGAGTG
GGACCGCCAGGCCGCGCTCTCGGACTACATCCCGTTCCGGCCCACCCGCGCGCCCGCCGCCGTCGTGGCGCTGCGCGGCA
CGCTGCTCAAGGCGCCCACGTTCCGCCGCGACGTCGTCGACGACCTCCGCTTCCTGGCCTGGGACAGCCTCAAGGGCTCC
GTGCGCTTCGCCGGCGCGCTGGCGGCGCTGCGGGCGGCCGCGCGCAAGTTCGGCGTCGCCAACGTGTGCGTGGGCGGGCA
CTCGCTGGGCGCCGGGTTCGCGCTGCAGGTGGGCAAGGCGCTGGCCAAGGAGGGCGTCTTCGTGGAGTGCCACGTGTTCA
ACCCGCCGTCCGTGTCGCTGGTCATGAGCCTCAAGGGCTTCGCCGAGACGGCCGGCGAGCTGTGGGGCCGCGTGCGCGCT
TGGATACCCTACATGGGCACCCAAGCCGGCGGGGACGC------GGGCGGCGG---CAGCAACAGCGAGAGCGAGGCCAA
GGCGTCGCTGGCGCGCGCCGGGATGGCCAAGTGGCTGCCGCACCTCTACATTAACACCAACGACTACATCTGCTGCTACT
ACAGCGACGCCGCGAGCGGGACGGCCACCGTGGCCGTCGGCAGCGGGGGCGGGAGCGGCACTAGCAAGGCCGGCGTGGCG
AGGATGGTGGTTGTTTCCAAGGGGCCGAGCAAGTTCCTGGCCGCGCACGGGCTGGAGCAGTGGTGGGCTGACGATGTCGA
GCTGCAGGTGGCGCTCAACCACAGCAAACTCGTCGACCGCCAGCTCAGGTCGCTCTACGCCCCGCCACCAGCCGCACCAG
CCGCTCGGAGTTAGGCACGTGTGCCATGGTACTATTGACTTATTATCA-----TTGTTTTTTTTTTCGTTGAATGGTTAT
TGCCATTGTTGCTGTTCAT---------GTTGGGTCCTTGCGGCTGGGGTTAATGATGTGCCCAATTCT--TTTTTTACA
GACCCAATTTGACATATTGGTTTATACCCTCCCCGTCCCATAATATAAGATGTTTTTGCAGGCTATATTAACTTGCAAA-
--------ATTGTGGAACGGAAGAAGTACTAAATAAAACAGATCTTGTCGAA---GTCGTCTCTAAATTGCATTGTGT-T
CCACCACTGACTGTAGAAAAAAAAGTGGGCAAGACCAAATCCACTCGCATAAGCTGCACTAATATTAAAGATTGTAAATA
AGTG---------GGATCACATTTCTTTGATCGCGGATGAATAGTTATTGAAGATTAAAAACAAAGGCTTATGGTTTGAA
TCTAATTAGCAGGTGCACCCCGAGTTTCTTGAGAGGGTGGAGACACAA--CATGGAACTCACATGTAGCTACTATAGATA
ATCTGAGAAGATTTTTGCTGAAGTTAGGAAAGTAACATACAACTTAAAGTGTGGAGTGCTAACATCAAAAGGACCTTAGG
AAA--------------------------------------------------TCTAATCTTTCTCTAGTGACCAATATG
GCAGGAAATGTTTCATCAAAAGGGCTTCCTTTCATATCTATGACGAGGAAGATTTTAGTTTCGCATAACAGGTCCGGTGA
AAGGTGATTGTTGCAGGGTTGTCAACTCTAAATTTTTCCATTGAATGGCAAATGGGAAAAGGGGGGACGGGGATAGTATG
TACACTTTTAAACATGG-TCTGATGTTCTGATGGGCACTGATCAAATCCTCTAAAATGCTACTGACCATTTGACTTATTA
TGAAAGCTTTGTTTGGCGAGAAGGAGGCCATATGAATCTAGAGAATGATATGGACCTGAAGAATGTTTATCAGAAGATGG
TAACAAAGATTTGGATAGACCCTTTGCCAGGAAGTGACCAAGTTTACTATTGATAGCATGGCTCTTGGACCTGATGGAAT
TCCTATAGAGTTCTTATCAGTACTCAAACATGACGTGCTGACTCC---TTATGATTTCTACGTGCACAAGTTGGATCTAC
GCCAAATAATTAACTCTGGGGCTCTAAATCTACTACCTAAAATTGATGATGCTGAAACCATCTAGTTGCCGAGAAGAAGT
GGTTCTATACCTTCTGGTGACACACATAAAAGGTGTTTCAAGCCATATTCGCTCATACGCGCATGG
>chr3D_1
TGCACCTTAAACTGTAACGCTTGGGGAATGTGGCCTTGTATGGAGAGACAAGGATACTGATACCCCAGGAGATGTGCAAA
GG--------TTGAGACCATAGTGTGAATCCAGCTAACCGTAGTCGTGCGATAAGGAGAGGCACCTCATTGATAATAAAC
TAGAAAGATTTTCCATGGTCCATGGTGCTCCAGCCTCCATGTATTCTCTTGAGTGGGAATGACAGTATTACAATGTTACT
AAATTCAAATTTAAAACTGGTGCTTTGTACAGTATAAAATGTGAAGGCGAAGGAT-------------------------
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---------------------ATGTAGATCCCTTGATTGCATACTATCAATACCAGATGCTACCATTGAATTTGCAACCT
GAACGATTTTGTCTCCCTCTGAGAATAATATTTCTCAGGTCTTTTACTAACTTGCACCATGGCATGTCTGCAGGGAGGTT
CACGACGAAGTAAGTCAAGCAAGGCAGAAGGCTTCAACGATGAAACACCGGCGACAAGAGCAGGAGTCGGCTCGTAGAGA
GAAACTCAGGCAAGCTTTCCTCAAGAAGCGCCTTGATAAGTTGATGGCTGAAAAGCAGGCATCTTCGGCCAGTGATGACC
AACCAGTTAGCTAGTCGAGGTTTTGTATGTCTT--AC--TTGTCTCCAGGTGGCAGTTGTTGTAGTTCATGTAATCACGG
TTCATGCAACTGCAAATGAGAAGATTTGTCTTGTTTGTGGTTCCCTTGATCTGGCGAAATCAAATTCAGAAAATGGTCTT
GGAATGTACAGTCAC---------------------------GCAATGTAGAGGTAATTTGAATCTTACACTGACGAGGT
GTTTTGATCCTTGACTGATTTGCTGGGCGTTGGGCAGATTCCTGCAACCTTTTTTTTTTCTGCTTTTAGATGCTTCTCGT
CGAGGCCGAGCATATGACTGCCATCTCCATCTTAAGTTGGCGAATCGTGTGCGCCCAACTCTGGCTGTGATCCACCAGTT
CTAATTTAGCATGGTATACAGAGACGAGAAAGAAGCAGGTTCCATGCTACCCTGGTTGGATGATGGAATAAAGACCGAGG
ATAAAAAGTTTCGCCGCGCTTTCCGTGATTCTTTTCAGCTTGAAACAAACTATTCTCGCGGAAGCTTAACCATTCCCTAC
ATCTGCGCGGGCGAGAACCGAGAAG-----------GCGTGGCGCGCGACTTGACGGTGGAGGAACGATCAATGGCCAAG
CCGGCTCCGACTAAGAACGCCGGCGACGCAGCAACGGCGGTGGTGCCAGTGCCGAGTCCGTTCGAGTACCATGTCTATGG
CCCCCGCAAGCTGTCCTTCACGAGCTGGAGAGATCTTCTTAGCTCAAGCTGGTCAGTACTC--TACTCCGTATGTGTTTG
TACTGCACTTGCTCAAGCTAGTCAGTACTGCACTTGGACGGGTGCATAATTTGCATTGCACATTCGCGTAGCTT------
-------------TACCGGGAATTTGTTGCGATGGTT-GATGCAGGAAGAACCCCAACTACCGGCGGATGGTGATCGCGT
GCTTCATCCAGGGGGCGTACCTGCTGGAGCTGGACCGGCAGGAGAAGCGGGACGAGCGCACCAGCCTCGCGCCGCAGTGG
TGGCGCCCGTTCAAGTACAGGCTGGTCCAGGCGCTCGTCGACGAGCGCGACGGCTCCATCTACGGCGCCGTCCTCGAGTG
GGACCGCCAGGCCGCGCTCTCGGACTACATCCCGTTCCGCCCCACCCGCGCACCCGCCGCCGTCGTGGCGCTGCGCGGCA
CGCTGCTCAAGGCGCCCACGTTCCGCCGCGACGTCGTCGACGATCTCCGCTTCTTGGCCTGGGACAGCCTCAAGGGCTCC
GTGCGCTTCGCCGGCGCGCTGGCGGCGTTGCGGGCGGCCGCGCGCAAGTTCGGCGTGGCCAACGTGTGCGTGGGCGGGCA
CTCGCTGGGCGCCGGGTTCGCGCTGCAGGTGGGCAAGGCGCTGGCCAAGGAGGGCGTCTTCGTGGAGTGCCACGTGTTCA
ACCCGCCGTCCGTGTCGCTGGCCATGAGCCTCAAGGGCTTCGCCGAGACGGCCGGCGAGCTGTGGGGCCGCGTGCGCGCT
TGGATACCCTACATGGGCACCCAAGCCGGCGGGGACGC------GGGCGGCGG---CTGCAACAGCGAGAGCGAGGCCAA
GGCGTCGCTGGCGCGCGCCGGGATGGCCAAGTGGCTGCCGCACCTCTACATCAACACCAACGACTACATCTGCTGCTACT
ACAGCGACGCCGCGAGCGGCACGGCCACCGTGGCCGTCGGCAGCGGGGGCGGGAGCGGCACTAGCAAGGCCGGAGTGGCG
AGGATGGTGGTTGTTTCCAAGGGGCCGAGCAAGTTCCTGGCCGCGCACGGGCTGGAGCAGTGGTGGGCTGACGATGTCGA
GCTGCAGGTCGCGCTCAACCACAGCAAACTCGTCGACCGCCAGCTCAGGTCGCTCTACGCCCCGCCACCGGCCGCACCAG
CCGCTCGGAGTTAGGCACGTGTGCCATGGTACTATTGACTTATTATCA-----TT-----TTTTTTCGTTGAATGGTTAT
TGCCATTGTTGTTGTTCCT---------GTTGGGTCCTTGCGGCTGGGGTTAATGATGTGCTCAAT--T--TTTTTTACA
GACCCAATTTGACATATTGGTTTATACTC-CCCCATCCCATAATACAAGATATTTTTACAAGCTATATTAACTTGCAAA-
--------ATTATGGGACGGAAGAAGTACTAAATAAATCAGATCTTGTCGAA---GTCGTATCTAACTTGCATGGTGTCT
CCACCATTGAC--TATAGAAAAAATTGGGCAAGACCAAATCCACTCGCATAAGCTGCACTAATATTAAAGATTGTAAATA
AGTGAGAACCTAAGGATCACATTCCTTTCATCGCGGATGAATAGTTATTGGAGATTAAAAACAAAGGCTTATGGTTTGAA
TCTAGTTAGCTGGTGCACCCCGAGTTCCTTGAGAGGGTGGAGAGAGAGAGCATGGAACTCACCTGTAGCTACTATGGATA
ATTTGAGAAGATTTTTACTGAAGTTAGGAAAGTAACATACAACTTAAAGTGTGGAGTGCTAACATCAAAAGGACCTCAGG
AACAAAATAAGAGTTGCTTGATAAATTGGAAGATTTGGAGTTGCTTGAAGAAATCTAATCTTTCTCTGGTGACCAATATG
GCAGGAAATGTTTCATCAAAAGGGCTTTCTTTCATATCTATGACGAGGAAGATTTTAGTTTCGCATAACAGGTCCGGTGA
AAGGTGATTGTTGCAGGGGTGCCAACACTAAATTTTTCCATTGAATGGCAAATGGGAAAAGGGGGGA-GGGGATACTATG
TACACTTCTAAACATGGCTCCGATGTTCTCATGGGCAGTGATCAAATCCTCTAAAATGCTACTGACCATTTGACTTATTA
TGAAAGCTTAGTTTGGAGAGAAGGAGGCCATATGAATCTAGAGAATGCTGTGGACCTGAAGAATGTTTATCAAAAGATGG
TAACAAAGATTTGGATAGACCCTTTGCCAGGAAGAGACCAAGTTTACTATTGATAGCATGGCTCTTGGACCTGATGGAAT
TCCTATAGAGTTCTTATCAGTACTCAA-CATGGCCCGCGGACTCCTTTTTATGATTTCTACGCGCACAAGTTGGATCTAC
GCCAAATAATTAACTCTGGCGCTCTAAATCTACTACCGAAAATTGATGATGTTGAAACCATTCAGTTGCCGAGAAGAAGT
GGTTCTAGACCTTCTGGTGACACACATAAAAGGTGTTTCAAGCCATATTCGCTCATACGAGCATGG
>chr3A_1
TGCACCTTAAACTGTAACGCTTGGGGAATGTGGCCTTGTATGGAGAGACAGGGATACTGATACCCCAGGAGATGTGCAAG
GGTTGAGAGTTTGAGACCATCGTGTGAATCCAGCTAATCGTAGTCGTGCGAT---GAGAGACACCTCATTGATGATAAAC
TAGAAAGATTTTCCATGGTCCATGTTGCTCCAGCCTCCATGCATTCTCTTGAGTGGGA-TGAGAGTATTACAATGTTCGT
AAATTCAAATTTAAAACTGATGCTTTGTGCAGTATAAAATGTGAAGGCGAAGGATTCAGTCCTTGCTAGCATCCCAAGTT
ATCATATGTCATGTTTCCTTTGGCCTAAGGAATCCCTTAGTACGTTGGAAAAATTGTTGAGGGCTTTTTTCTGGCAAGGC
AAGAGCACAGTCAAGGGAGGCCAATGCCTCGTTGCCTGGCATTTTGTCACTCTCCCAAGATCTGCAGGCGGTTTGGGCAT
CAGGGACCTTCTTGCTCATAACCAAGCTTTGCTCACCAAGTTTGCAGCTAGAGTTTTGCAGACCTCGGAAATCCCCTGCT
TTCAATGGTTTGCCCAGCAGTACTGCAAGCTCTTTATCCCTCTCAAAGGCTCAAAACCGTGACACGGCTATATGGAAAAA
CTTCAAACCTTTTATTCCTACAGTGTTGGCATCTTCCAAGTGTTCAACGGGTCCTGGCAAGCTTATCTCCTTCTGGCATG
ATCTCTGGTTGTCAGCGGGGTGACTACGGTTCTTGTTGCCCGCCCTCTTCTCGTATGCTAAAGATGGCGCTTGCACGGTG
GCCTCTCAGCTCTGCAACAACACCTGGTGCATTCAACTGCACCCCAACCTGTCGGCCACTGCCGCCCATGAACTGCAAAT
GCTGCACTCTTTTCTACCCCAGCCTCCTACAGATGCTGCAGTTTCCGGCTCAGACGTCAGAGTTTCTGCTATACACCATA
AGCCACTGACTACTTCTCAAGTCTATCAACTTTCTACCTTCAGAGGTGTGGCCTGTGAGTTCAGCTCCTGGATTTGGGAC
AAGATCATCCCTCTGAGGTATCGCGTCTTTCTCTGGCTGGCTTTTTGGGGTCGACTCAACACACGAGATAACATGATTCG
GAAACATTGGTCCCTACTTACCGAGCACCAGGACTGTGACATTTGCCCTGCCAGCGAGTCTGCCAGCCACATTGTTCTGC
GCTGCTTCCCGGCTTCTGTTATCTGGGCCACGTTCCATATGAACGACCTTGCCTCTAGCTCCACGGACATCGTTCATTTT
ATGCACAGAGCTCAGCAAGCTTGGATCAACTCTAGAGGAGTGCACATTCTTTTCGCTGCGGCGGCAGTTACTCTCTGGCA
CGCGAGAAACGACAGAATCTTCAACAACAAAAGATGGCCCCCGTCCTATCTCAGAAGGTATATGTCACAACTCCTTCAGG
CTTGGCAGCACCGGGCAAAATAGCAGGCTGACAAGGATGCTATTACGAGATGGATGTATCTCCTGAGCTAATTTAGCTTT
GCAGTACTCTTCTTCTCTCCTCGCTTGCCCTGTTCTTCTCTCTCTCCAATGGCTGCTTATAGCCATGGCACTACGGTGCT
CAATGTAAGCTTCATGTAACTGACCCTTTGGTCCCAGGCCTTGGCCTGTTTGAAATATATAAGGTAGAATCTCATCTACC
TTTCATTTAAAAAAAAAGGATATGTAGATCCCTTGATTGTATACTATCATTACCAGATGCTACCATTGAATTTGCAACCT
GAACGATTTTGTCTCCCTCTGAGAATAATATTTCTCAGGTCTTTGACTAACTTGCACCATGGCATGTCTGCAGGGAGGTT
CACGACGAAGTAAGTCAAGCAAGGCAGAAGGCTTCAACGATGAAACACCGGCGACAAGAGCAGGAGTCGGCTCGTAGAGA
GAAACTCAGGCAAGCTTTCCTCAAGAAGCGCCTTGACAAGTTGATGGCTGAAAAGCAAGCATCTTCAGCGAGTGATGACC
AACCAAATAGCTAATCGAGATTTTGTATGTCTT--ACACTTGTGCCCAGGAAGCAGTTGTTGTAGCTCATGTGGTAATGG
TTCATGCAACTGAAAATGAGAAAACTTGCCCTGCATGTGATCTCTTGATCTA-GCGAAATCAAATTCAGAAAATTGTCTT
GGCATGTACAGTCGGTTCATCATCATATTGTTATACAATTATGCAACGTAGATGTAATTTGAATCTT---CTGACGAGGC
ATTTTGACCCTCAACTGATT---TGGGCCTTGGGCAGATTCCTGCAACCTTG----TTTCTACTTTTAGATGCTTCTCGT
CGAGGTCGGGCATATCATTGTCTTCTCCATCAGAAGTTGGCGAATCGTGTGCGCCCAACTCTTACTGTAATCCACTAGTT
CTAATCTCTC--GG--CACAGAGAGGAGAAAGAAGCAGGTTCCATGCTACCCTGAATGGATGATGGAATAAAGACCGAGG
ATAAAAAGTTTCGCCGCGCTTTCTGCGATTCTTTTCAGCTTGAAACGAACTATTCTCGCGGAAGCTT-------------
------------------------AAAGGCAACACTGCGTGGCTCGCGACTCCACGGTGAAGGAACGATCCATGGCCAAG
CCGGCTCCGACTAAGAACGCCGGCGACGCAGCAACGGCGGTGGTGCCAGTGCCGAGTCCGTTCGAGTACCATGTCTATGG
CCCCCGCAAGCTGTCCTTCACCAGCTGGAGAGATCTTCTTAGCTCAAGCTGGTCAGTACTC--TACTCCGTATGTGTTTG
TACTGCACTTGCTCAAGCTAGTCAGTACTGCACTTGGACGGGTGCATAATTTGCGTTGCACCTTCGCGTAGCTT------
-------------TACCGGGAGTTTGTTGCGATGGTTTGATGCAGGAAGAACCCCAACTACCGGCGGATGGTGATCGCGT
GCTTCATCCAGGGGGCGTACCTGCTGGAGCTGGACCGGCAGGAGAAGCGCGACGAGCGCACCGGCCTCGCGCCGCAGTGG
TGGCGCCCGTTCAAGTACAGGCTGGTCCAGGCGCTCGTCGACGAGCGCGACGGCTCCATCTACGGCGCCGTCCTCGAGTG
GGACCGCCAGGCCGCGCTCTCGGACTACATCCCGTTCCGCCCCACCAGCGCGCCCGCCGCCGTCGTGGCGCTGCGCGGCA
CGCTGCTCAAGGCGCCCACGTTCCGCCGCGACGTCGTCGACGACCTCCGCTTCCTGGCCTGGGACAGCCTCAAGGGCTCC
GTCCGCTTCGCCGGCGCGCTGGCGGCGCTGCGGGCGGCCGCGCGCAAGTTCGGCGTGGCCAACGTGTGCGTGGGCGGGCA
CTCGCTGGGCGCCGGGTTCGCGCTGCAGGTGGGCAAGGCGCTGGCCAAGGAGGGCGTCTTCGTGGAGTGCCACGTGTTCA
ACCCGCCGTCCGTGTCGCTGGCCATGAGCCTCAAGGGCTTCGCCGAGACGGCCGGCGAGCTGTGGGGCCGCGTGCGCGCT
TGGATACCCTACATGGGCACCCAAGCCGG---GGACGC------CGGCGGCGG---CGGCAACAGCGAGAGCGAGGCCAA
GGCGTCGCTGGCCCGCGCCGGGATGGCCAAGTGGCTGCCGCACCTCTACATCAACACCAACGACTACATCTGCTGCTACT
ACAGCGACGCCGCGAGCGGCACGGCCACGGTGGCCGTCGGCAGCGGGGGCGGGAGCGGCACTAGCAAGGCCGGCGTGGCG
AGGATGGTGGTTGTTTCCAAGGGGCCGAGCAAGTTCCTGGCCGCGCACGGGCTGGAGCAGTGGTGGGCTGACGATGTCGA
GCTGCAGGTGGCGCTCAACCACAGCAAACTCGTCGACCGCCAGCTCAGGTCGCTCTACGCCCCGCCACCGGCCGCACCGG
GCGCTCGGAGTTAGGCACGTGTGCCATGGTACTATCGACTTATTATCATCGTTTT-----TTTTTTCGTTGAATGGTTAT
TGCCATTGTTGCTGTTCATGTTGAGATGGTTGGGTCCTTGCGGCTGGGGTTAATGATGTGCCCAAT--TCTTTTTTTACA
AAAACAATTTGACATATTGGTTTATACTCTAATGTGT-CATAATATAAGATGTTTCTGCAAGCTATGTTAACTTGCAAAA
AGTCTTATATTGTGGAACAGAGAAAATACTAAATAAAATAGATCATATCAAAGTTGTCGTCTCTAACTTGCATGGCGTCT
CTACCATTGAC--TATAAAGAAAATTGGGGAAGACCAAATCCACTCGCATAAGCTGCACTAATATTAAAGATTGTAAATA
AGTGAGACCCTAAGGATCACATTCCTTTGATCACGGATGAATAGTTATTAGAGACTAAAAACCAAGGCTTATGGTTTGAA
TCTAGTTAGCAGGTGCACCCCGAGTCCCTTGAGAGGGTGGAGAGAGAG--CATGGAACTCACCTGTAGCTACTATAGATA
ATTTGAGAAGATTTTTGCTGAAGTTAGGAAAGTAACATACAACTTAAAGTGTGGAGTGCTAACATCAAATGGACCTCGGG
AAACAAAT------------------TGGAAGATTTGGGGTTGCTTGAAGAAATCTAATCTTTCTCCGGTGACCAATATG
GCAGGAAATGTTTTACCAAAAGGGCTTTCTTTCATATCTATGATGAGGAAGATTTTAGTTTCGCATAACAGGTCTGGTGA
AAGGTGATTGTTGCAGGGGTGCCAACACTAAATTTTTCCATTGGATGGAAAATGGGAAAAGGGGGGAGGGGGATACTATG
TACACTTTTAAACATGGCTCCGATGTTCTGATGGGCACTGATCAAATCCTCTAAAATGCTACTGACCATTTGACTTATTA
TGAAATCTTTGTTTGGCGAGAAGGAGGCCTGA---------AGAATGATGTGGAGCTGAAGAATGTTTATCAGAAGATGG
TAACAAAGATTTGGATAGACCCTTTGCCAGGAAGAGACCAAGTTTACTATTAATAGCATGGCTCTTGGACCTGATGGAAT
TCCTATAGAGTTCTTATCAGTACTCAAACATGACCCGCTGACTCCTTTTTATGATTTCTACGTGCACAAGTTGGATCTAC
GCCAAATAATTAACTTCGAGGCTATAAATCTACTACCTAAAATTGATGATGCTGAAACCATTCAGTTGCCGAGAAGAAGT
GGTTCTAGACCTTCTGTTGACACACATAAAAGGTGTTTCAAGCCATATTCGCTCATACACGCATGG
>chr3A_1389
T-------------------------------------------------------------------------------
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-------------TACTGGAAGTTTATTGCGATGGTT-GACGCAGGAAGAACGCCAACTACCGGCGGATGGTGATCGCGT
GCTTCATCCAGGGGGCTTACCTGCTGGAGCTGGACCGGCAGGAGAAGCGCGACGAGCGCACCGGCCTCGCGCCGCAGTGG
TGGCGCCCGTTCAAGTACAGGCTCGCCCAGGTGCTCGTCGACGAGCGCGACGGCTCCATCTACGGCGCCGTCCTCGAGTG
GGACCACCAGGCCGCGCTGTCCGACTACATCCCATTCCGCCCCACCCGCGCGCCGGTGGCCGTCGTGGCGCTGCGCGGCA
CGCTGCTCAAGGCGCCCACGTTCCGCCGCGACGTCGTCGACGACCTCCGCTTCCTGGCCTGGGACAGCCTCAAGGGCTCC
GTCCGCTTCGCCGGCGCGCTGGCGGCGCTGCGGGACGCCGCGCGCAGGTTCGGCGTCGGCAACGTGTGCGTCGGCGGGCA
CTCGCTGGGAGCCGGGTTCGCGCTGCAGGTGGGCAAGGCGCTGGCCAAGGAGCGCGTCTTCGTGGAGTGCCACGTGTTCA
ACCCGCCGTCCGTGTCGCTGGCCATGAGCCTCAGGGGGTTCGTCGAGACGGCCGGCGAGCTGTGGGGCCGTGCGCGCGCG
TGGATCCCATACGTGGGCTCCCAGCCGGC---TGCGGACACGAGCGGCGGCAACGCCGGCCACAGTGAAAGTGAGGCGAG
GGCGTCGCTCGCGCAGTCGGGGATGGGAAGGTGGCTGCCGTACCTGTACATCAACACGAACGACTACATCTGCTGCCATT
ACAGCGACGCAGCGGGCGGGACGGCGACCGTGGCGGTCGACAGCGGGGGCGGGAACGGCGGTGGCAAGGCGGGGGCGGCG
ACGATGCTTGCGGTGTCCAAGGGGCCGAGCAAATTCCTGGCAGCGCACGGTCTGGAGCAGTGGTGGGCCAACGATGTCGA
GCTGCAGGTGGCACTCAACCACAGCAAGCTAATCGACCGCCAGCTCAGGTCGCTCTACGCCGCGCCGCCCGCCGCACTGC
GTGCCCGGAGTTAGGC----------------------------------------------------------------
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>chr3B_1399
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-----------------------TTATTGCGATGGTT-GATGCAGGAAGAACTCCAACTACCGGCGGATGGTGATCGCGT
GCTTCATCCAGGGGGCTTACCTGCTGGAGCTGGACCGGCAGGAGAAGCGCGACGAGCGCACCGGCCTCGCGCCGCAGTGG
TGGCGCCCGTTCAAGTACAGGCTCGCCCAGGTGCTCGTCGACGAGCGCGACGGCTCCATCTACGGCGCCGTCCTCGAGTG
GGACCACCAGGCCGCGCTGTCCGACTACATCCCATTCCGCCCCACCCGTGCGCCGGCAGCCGTCGTGGCGCTGCGCGGTA
CGCTGCTCCGTGCGCCCACGTTCCGCCGCGACGTGGTGGACGACCTCCGGTTCCTGGCCTGGGACAGCCTCAAGGGCTCC
GTCCGCTTCGCCGGCGCGCTGGCGGCGCTGCGGGACGCCGCGCGCAGGTTTGGCGTCGGCAACGTTTGCGTGGGCGGGCA
CTCGCTGGGAGCCGGGTTCGCGCTGCAGGTGGGCAAGGCGCTGGCCAAGGAGCGCGTCTTCGTGGAGTGCCACGTGTTTA
ACCCGCCGTCCGTGTCGCTGGCCATGAGCCTCAGGGGGTTCGTCGAGACGGCCGGCGAGCTGTGGGGCCGTGCGCGCGCG
TGGATCCCATACGTGGGTTCCCAGCCGGC---GGTGGACACGAGCGGCGGCGA---CGGCCACAGTGAAAGTGAGGCGAG
GGCGTCGCTGGCGCAGTCGGGGATGGGAAGGTGGCTGCCGTACCTGTACATCAACACGAACGACTACATCTGCTGCCACT
ACAGCGACGCAGCGGGCGGGACGGCGACCGTGGCGGTCGACAGCGGGGGCGGGAACGGCGGTGGCAAAGCGGGGGTGGCG
ACGATGCTTGTGGTGTCCAAGGGGCCGAGCAAATTCCTGGCAGCGCACGGGCTGGAGCAGTGGTGGGCCGACGATGTCGA
GCTGCAGGTGGCACTCAACCACAGCAAGCTCATCGACCGCCAGCTCAGGTCGCTCTACGCAGCGCCGCCTGCCGCACTGC
GTGCCCGGAGTTAGGC----------------------------------------------------------------
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------------------------------------------------------------------
>chr3D_1403
--------------------------------------------------------------------------------
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---------------------------TGCGATGGCT-GATGCAGGAAGAACGCCAACTACCGGCGGATGGTGATCGCGT
GCTTCATCCAGGGGGCTTACCTGCTGGAGCTGGACCGGCAGGAGAAGCGGGACGAGCGCACCGGCCTCGCGCCGCAGTGG
TGGCGCCCGTTCAAGTACAAGCTCGCCCAGGTGCTCGTCGATGAGCGCGACGGCTCCATCTACGGCGCCGTCCTCGAGTG
GGACCACCAGGCCGCGTTGTCCGACTACATCCCGTTCCGCCCCACCCGTGCGCCAGCAGCCGTCGTGCCGTTGCGCGGCA
CGCTGCTTCGTGCCCCCACGTTCCGCCGCGACGTGGTGGACAACCTCCGTTTCCTGGCCTGGGACAGCCTCAAGGGCTCC
GTCCGCTTCGCCGGCGCGCTGGCGGCGCTGCGGGACGCCGCGCGCAGGTTCGGCGTCGGCAACGTGTGCGTCGGCGGGCA
CTCGCTGGGAGCCGGGTTCGCGCTGCAGGTGGGCAAGGCGCTGGCCAAGGAGCGCGTCTTCGTGGAGTGCCACGTGTTCA
ACCCGCCGTCCGTGTCGCTGGCCATGAGCCTCAGGGGGTTCGTCGAGACGGCCGGCGAGCTGTGGGGCCGTGCGCGCGGG
TGGATCCCATACGTGGGCTCCCAGCCGGC---TGCGGACACGAGCGGCGGCAACACCGGCCACAGTGAAAGTGAGGCGAG
GGCGTCGCTGGCGCAGTCGGGGATGGGAAGGTGGCTGCCGTACCTGTACATCAACACGAACGACTACATCTGCTGCCACT
ACAGCGACGCAGCCGGCGGTACGGCGACCGTGGCGGTCGACAGCGGGGGCGGGAACGGCGGTGGCAAGGCGGGGGTGGCG
ACGATGCTTGTGGTGTCCAAGGGGCCGAGCAAATTCCTGGCAGCGCACGCGCTGGAGCAGTGGTGGGCCGACGATGTCGA
GCTGCAGGTGGCACTCAACCACAGCAAGCTAATCGACCGCCAGCTCAGGTCGCTCTACGCAGCGCCGCCTGCCGCACTGC
GTGCCCGGAGTTAGGC----------------------------------------------------------------
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------------------------------------------------------------------
>SNPs
-----S--------------------------------------------------------------------------
------------------------------------------------S-------------------------------
------------------------------------------------------------------------S-------
-S------------------------------------------------------------------------------
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-----------------------------------S-------------S---------S-----S----------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------SS------------------------------------S--------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S------------------------------S------------S---------------------------S-
------------------------------------------------------------------------------S-
S-SSSSS-S-SSS---S-S-SSS--------S------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S---SS--S--------S-----
-SS------------------------------S------S------S--------------------------SSSSSS
SSSSSSSSSSSSS-----------------------------------------SS------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
---------------------------------------------------------S----------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-------------------------------------------------------SSSSS--------------------
------------------------------------------------------------------SS------------
---------------------------S------S-------------------------S-------------------
------------------------------------------------------------------S------S------
------S----SS--S--------S-------------------------------------------------------
-----------------------S--------------------------S-----------------------------
----S---------------------S----------------S-S-S--------------S-----------------
--S-------------------------------------------------------------------------S---
-------------------------------------------------------------------S------------
---------------------------S----------------------------------------------------
------------------S--S----S----------------------------------------S-------S----
--------------------S-----------------------------------------------------------
-------------------------------------------------S------------------------------
----------------------------------S---------------------------------------------
----------------------------------SS--------------------------------------------
-------------------------------------------------------------SS-----------------
-------S----------------------------------------------------------
>forward_129
--------------------------------------------------------------------------------
-----------------------------CCAGCTAACCGTAGTCGTGT-------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_2892
--------------------------------------------------------------------------------
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-----------TTTACCGGGAGTTGTTGCGA-------------------------------------------------
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------------------------------------------------------------------
>forward_2848
--------------------------------------------------------------------------------
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----------------------------TACACCTGGACGAGTGCATG--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_4265
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------GTGGGCAAGACCAAATCCAC------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
