CLUSTAL X (1.81) multiple sequence alignment input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 TCAAGCTCTCGCCTTGACTTACAGGTAATTACCAAAATTTCCTTGCAAGC chr2A_139 AGTACGAGAAAACTCTACAGAGTGTACAGTGCTGACTAGTAGAT------ chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 AAAAAGA------------------------------------------- SNPs SS--SSSSSSSS--SS--SS-SS-SSS-S-S-SS-SSSS-SSS-SSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 AGAATCTCCAGAATTAATTTGCTCTAGTTGGGTCGCTCAATCACTTAGCC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GCAAAAAAAAAAGGGTCGCTTAATCACCTTAGGGAGGTTGATGCAGGGGG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GTGAGTAGAATCGGGTTGTAGATCAGAAGACAAAGAGGCACACGAGCAAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 TCTCGGGGAAGCTGGCTGGATTGCTACTAACTGAACCTCTGGTATTTTCC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 ------GGAAGCTGGCTGGATTGCTA------------------------ reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 ATTACAAGGGGAAAGTAGTTCATCTACTACTCTGTTCTCCCCTCTAGTCA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 CTAGGGGAGACTTACAAAATAAGGTTACAGAGAACTCTAGAAACTAGTAC chr2A_139 -------------------------------------------------- chr7B_341 ----------------------------------------AAACTGATAC chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SS--- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 TCCCTCCGTTCCATAATGTAGTGCTTATAGATTTTTGCAAAAGTCAAACA chr2A_139 -------------------------------------------------- chr7B_341 TCCCTCCGTTCCATAATGTAGTGCCTATAGATTTTTGCAAAAGTCAAACA chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------------------S------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 TTACAAACTGTGACCATATCTATAGAGAAAAGTAGGTACATCTAGAATAC chr2A_139 ----------------------TAAAGAAAA------------------- chr7B_341 TTACAAACTTTAACCATATCTATAAAGAAAAGTAGGTACATCTAGAATAC chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---------S-S------------S------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 CAAATGCACATCATTGGATACACCGTGAGTTATATTTTCAGAATGTGCAT chr2A_139 -------------------------------------------------- chr7B_341 CAAATGGACATCACTGGATACATCGCGAGTTATATTTTCAGAATGTATAT chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------S------S--------S--S--------------------SS-- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GTTTGATATTGTAGATGTAGACAGTTTTCTCTATATACTTGGTCAAAGGT chr2A_139 -------------------------------------------------- chr7B_341 GTTTGATATTGTAGATGTAGATAGTTTTCTCTATACACTTGGTCAAAGTT chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---------------------S-------------S------------S- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GGCAAAGTTTGACTTTCATAAAAATCTATAGGCACTACATTGTGGAATGG chr2A_139 -------------------------------------------------- chr7B_341 GGCAAAGTTTGACTTTCATAAAAATCTATAGGCACTACATTGTGGAATGG chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 AGGGAGTATGAGAAAACTCTACAGAGTGTACAGTGCTGACTAGTAGATTA chr2A_139 -------------------------------------------------- chr7B_341 AGGGAGTATAGAACAGCG-------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---------SSS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 AAGAAACAGAAAACCAAAGGAACAGGTACTCCTCTTAGTTGAAGCTAGCT chr2A_139 -------AGAAAACCAAAGGAACAGGTACTCCACTTAGTTGAAGCTAGCT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSS-------------------------S----------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GCATCAGAGGTGATTTGTGTGCTTCTTCTACTAATCACCTTAGGGAGGTG chr2A_139 GCATCATCCTCCCCAGGCCTGCAAAAGAACTCGTCCTCGAGTTTAAACCT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------SSSSSSSSSS-SS---SSSSSSSSSSSSS-S-SSSSSSS-SSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 ------------------------------------------------TG reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 ATTGGCGGGCGTAAGATTTGACAATTTTTGTATAGATAGATTGAAAGACC chr2A_139 GAACTTCA------------------------------------------ chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 ATTGGCGGGCGTAAGATT-------------------------------- reverse_5365 -------------------------------------------------- forward_771 -TTGGCGGGCGTAAGATTTGA----------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 TCACCTACCTTACACAAGAGAGCAAAGAAGCTATTATACTGTCAAGCAAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 CAGTTCGTTGACTTTTTCTATTTCAGAAACAGAAGAGTGCAAGATCGTTG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 TGATTTCGTAATTATACAAGAAAAAACAATCAATGGATCAGGGCAATCAC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 ---------------------------------------------ATCCC chr1A_947 ----------------------------------------------TCAC chr3D_947 ----------------------------------------------TCAC chr3B_947 ----------------------------------------------TCAC chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GAATAATGCGCTTGCTCTTGTTTCAGGAGTACCTTGGCGTTTAATTGCAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 AAATGATGCACTTGTTCTTTTTTCAGG-GTACCCCGGCGTGTAGCTGCAA chr1A_947 AAATAATGCCCTTGCTCTTGTTTCAAGGGTACCGTGCC--ATAACTGCAA chr3D_947 AAATAATGCGCTTGCTCTTGTTGTAGGGGTTCCGTGACATCTAATTGCAA chr3B_947 AAATAATGCGCTTGCTCTTGTTGTAGGGGTTCCGTGACATCTAATTGCAA chr1B_952 -AATAACGCGCTTACTCTTGTTTCAGGACTACTTTGGCGTTTAATTGCAA chr1A_981 ------------------------------ACCGTGGCATATAATTGCAA chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs S------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ATGCATCGCCGATCTAC---CTTCACACCAAGGGACCTGGAGTGCATGCT chr1B_1_TraesCS1B01G004000 ATGCATCGCCGATCTAC---CTTCACACCAAGGGACCTGGAGTGCATGCT chr2A_139 --------------------------------------------GATGTT chr7B_341 -------------------------------------------------- chr3A_946 ATGGATCGTCGTTCTAGTGGTATTACACCAAGGGACCTGGAGTGCATGCT chr1A_947 ATGGAATGCCGATCTAT---TATCACACCAAGGGACCTGGAGTGCATGCT chr3D_947 ATGGAACGCCGATCTAC---TGTCACACGAATGGACCTGGAGTGCATGCT chr3B_947 ATGGAACGCCGATCTAC---TGTCACACGAATGGACCTGGAGTTCATGCT chr1B_952 ATGCATCGCCGATCTAC---CATCACACCAAGGGACCTGGAGTCCATGCT chr1A_981 ATGGAACGCCGATGTAC---TATCACACCAAGGGACCTAGAGTGGATGCT chr1B_1010 ---------CGATCTAT---TATCACACCAAGGGACCTGGAGTGCATTTT chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---------------------S---------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ACGTAATGAAACGGCAGAGCCCAAGCCCCTGCCT---------------- chr1B_1_TraesCS1B01G004000 ACGTAATGAAACGGCAGAGCCCAAGCCCCTGCCT---------------- chr2A_139 TCGTGATGATATGGCACAAGATGCCTAACATTGAACACATCAGAAGTGCG chr7B_341 -------------------------------------------------- chr3A_946 ATGTGATGAAACGGCAGAGCCCAAGGCTCTGCCA---------------- chr1A_947 ATGTGATGAAACGGCAGAGCCCAAGCCGCTGCCA---------------- chr3D_947 AATTGATGAAACGGCAGAGCCCATGGCTCTGCCA---------------- chr3B_947 AATTGATGAAACGGCAGAGCCCATGGCTCTGCCA---------------- chr1B_952 ACGTAATGAAACGGCAGAGCCCAAGCCCCTGCCT---------------- chr1A_981 ATGTGATGAAACGGCAGAGCCGAAGGCCCTGTCA---------------- chr1B_1010 ATGTGATGAGACGGCAGAGCCCAAGGCTCTGCCA---------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TAGATGGCTAGGTAGCTCCAGTTTATACGCGTTGTTATTAACCCTTTTTA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TCACTTTGCACGGTCCTATTTTCCTCTGGCTTAACTTATTGTATTCTTCA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 GCAGGAAAACGATCTTTGGTGAGGATAGCCCATACCAAATCTCCTTCTCC chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 GAACACAACCTGACGACGGTGTTGGTCAGCTGCAGCCTTATATTTAGCAT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TGCTTTCTTGTATTCGTTGATGGACAAGTTTATAAATTGAGCCCATCTCT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TCTACCATATTCTCTGCTTTCAAAATTTTCTTTCCAATGGCAGGTATAGG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TGCTAGTTCTAGAACTCCATTGGGGACTCTACCATAAATTATCTCAAAGG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 GGCATAGTCCAGTAGAACGATTGGTTGTCCTATTGAAGGCAAACTCAGCA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TGTGGTAGAATTGTGTCCCATTGTTTCGGCTTGTCGCCTAGAAGAGCTCG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TAACATCTTCCCTAAGCTTCTATTTACCACTTCAGTTTGACCGTCCGTCT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 GTGGATGATAAGCCGTGCTGAAATTCAAAGTAGTTCCCATTTGTCTCCAC chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 AACGATCGCCAAAAATGAGACATGAACTTGGTGTCTCGGTCAGAGGTAAT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 ACTCCTTGGCACACCATGCAACCGCACTATTTCTCGAAAGAATAAAACAG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 AAATTTGACTAGCATCAGATGTCTTGCGGCAGGCTATGAAATGCGCCATT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TTGCTGAATTTGTCTACCACGACAAAGATGGAGTCCACTCGACGCTGTGT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TCGTGGGAGACCTAGAACAAAATCCATACTTATATCTATCCATGGTGCAT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ---------------------------------------CTGTCACTTCT chr1B_1_TraesCS1B01G004000 ---------------------------------------CTGTCACTTCT chr2A_139 CAGGTACAGGTAAGGGCATATACAAACCTGCATTCGTAGCTGTACCTTTT chr7B_341 -------------------------------------------------- chr3A_946 ---------------------------------------CTGTCGCTCCT chr1A_947 ---------------------------------------CTGTCACTTCT chr3D_947 ---------------------------------------CCGACACTTCT chr3B_947 ---------------------------------------CTGACACTTCT chr1B_952 ---------------------------------------CTGTCACTTCT chr1A_981 ---------------------------------------CTCTCACTTCT chr1B_1010 ---------------------------------------CTGTCGCTTCT chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GGAAA--------------------------------------------- chr1B_1_TraesCS1B01G004000 GGAAA--------------------------------------------- chr2A_139 GAAACTTGACAGGTATGACATCTCTTCACGAACCTTTCCATATCTCGTCA chr7B_341 -------------------------------------------------- chr3A_946 GGAAG--------------------------------------------- chr1A_947 GAAAG--------------------------------------------- chr3D_947 GCGTC--------------------------------------------- chr3B_947 GCGTC--------------------------------------------- chr1B_952 GGAAC--------------------------------------------- chr1A_981 GGAAG--------------------------------------------- chr1B_1010 CGAAG--------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----S--------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 AGCATGGGGCCAAAAATACTGTTTCAGCAATAGTTCTACAGATTTGTCTC chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 GGCCTCGATGTCCTTCATTGTGAATCTCCTTTATGATCAGATCACGTACA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 GAGCATTTTGGAATGCAGAGTTGAACCCCACGAAAAAGAAATCCTTCATG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ------AAATCACAAATGGTTTCTCTGCGGAGCAGG-----AAATTGGGA chr1B_1_TraesCS1B01G004000 ------AAATCACAAATGGTTTCTCTGCGGAGCAGG-----AAATTGGGA chr2A_139 GATGGTATATTCAGCAGAGTTCCTTTCTTGAGCAGCCTCATAAATTTTGT chr7B_341 -------------------------------GCATG-----AAATTTTTT chr3A_946 ------AAATCACAGGTGATTTCTCTGATGAGCAGG-----AAATTGGTA chr1A_947 ------AAATCACAAATGATTTCTCTCCTCAGAAGC-----AAATTGGCT chr3D_947 ------ATATCACCGATGATTTCTCTGCTGAGCATG-----AAATTGGCA chr3B_947 ------ATATCACCGATGATTTCTCTGCTGAGCATG-----AAATTGGCA chr1B_952 ------AAATCACAAATGGTTTCTCTGTGGAGCAGG-----AAATTGGGA chr1A_981 ------ATATCACACATAGTTTCTCTGATGAGCAGC-----GAATTGGCA chr1B_1010 ------AAATCACAGATGGTTTCTCTGGTAAGCTGC-----AAATTGGCT chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GTGGTGGGTTTGCGGTGGTTTATAAGGTACAGTAG--------------- chr1B_1_TraesCS1B01G004000 GTGGTGGGTTTGCGGTGGTTTATAAGGTACAGTAG--------------- chr2A_139 TGAAAAAGGGATCAGTTCTATAGAGCTCCGGAATACTGTCAAAACCAACA chr7B_341 TGATAAAGAGGATATAGGAAAAAAAATCAACGG----------------- chr3A_946 GAGGTGGATTTGCGGTGGTTTATAAGGTACGGTAA--------------- chr1A_947 ATGGTGGGTTCGCGGAGGTTTATGAGGTACAGTAA--------------- chr3D_947 GAGGGTTTTTA---GTGGTTTATAAGGTACAGCAA--------------- chr3B_947 GAGGTGGGTTTGCGGTGGTTTATAAGGTACAGCAA--------------- chr1B_952 GTGGTGGGTTTGCGGTGGTTTATAAGGTACAGTAG--------------- chr1A_981 GCGGTGGATTTGTGGTGGTCTATATGGTACAATAA--------------- chr1B_1010 GGGGTGGGTTTGCGGTGGTTTATAAGGTACAGTAA--------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ---------------------------------------CTGCC------ chr1B_1_TraesCS1B01G004000 ---------------------------------------CTGCC------ chr2A_139 ACTTGAACCCTCATCATGCTTAGGCATTGTGCTCTGCGGCTCAGTGCATC chr7B_341 -------------------------------------------------- chr3A_946 ---------------------------------------CTTTGAGCTGG chr1A_947 ---------------------------------------CTCTGACTCTG chr3D_947 ---------------------------------------CTCTGAGCTGA chr3B_947 ---------------------------------------CTCTGAGCTGA chr1B_952 ---------------------------------------CTGCC------ chr1A_981 ---------------------------------------CTTTGGGCTGC chr1B_1010 ---------------------------------------CTCAGAGCTCC chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 ----------------------------------AAGGTACAGTAGCTGC reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -CCAGTC-------TTGATCAAACTTAATCTGCAAACTGAAGTTG----- chr1B_1_TraesCS1B01G004000 -CCAGTC-------TTGATCAAACTTAATCTGCAAACTGAAGTTG----- chr2A_139 AGCCACCCTGTTTTGTGCTCCAGATTTGTGCTTGAGTACAAAATTATACT chr7B_341 ---------------TGATATACCTTAATAATGGCG-------------- chr3A_946 CCTGGTC-------TCAATGAAAGTTCATCTGAAAGCTGAAGTTG----- chr1A_947 AGCTGCCCTGTGATTTGATCAAACTTTATCTGCAAACTGAAGTTG----- chr3D_947 TCCGGTC-------TTGATATAACTATATCTGAAAACTGTAGTTG----- chr3B_947 TCCGGTC-------TGTAGG-----------GAAAACTGTAGTTG----- chr1B_952 -CCGGTC-------TTGATCAAACTTAATCTGCAAACTGAAGTTG----- chr1A_981 TCCGGTCT-----TTTGATCAAACTTTATCTGAAAACTGAAGTTG----- chr1B_1010 CTCGGATT-----TT--ATCGAACATTATCTGAAAATTGAAGCTG----- chr1B_1186 -----------------ATCAAACTTTATCTGGAAACTGAAGTTG----- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---S---------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 CCCA---------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ------------TTGCTGACAAGGCAT-----ATTCTCACTGTAGGAAAA chr1B_1_TraesCS1B01G004000 ------------TTGCTGACAAGGCAT-----ATTCTCACTGTAGGAAAA chr2A_139 CTTCCAAAAAGCTTGCCCACCGTGCAT-----GTTTACGGTTCAGGTTAG chr7B_341 -------------------CAAAACATAGCATGGA-----------GATA chr3A_946 ------------TTGCTCATAATGCAT-----CTCTGCGCTGCAGGGAAA chr1A_947 ------------TTGCTGACAAGACAAGGCATCTTCTCCATGTAGGGTAT chr3D_947 ------------TTGCTGACAAGGCAA-----CTTCTCTCTGTAGGGAAA chr3B_947 ------------TTGCTGACAAGGCAA-----CTTCTCTCTGTAGGGAAA chr1B_952 ------------TTGCTGGCAAGGCAT-----ATTCTCACTGTAGGGAAA chr1A_981 ------------TTTCTGACAAAGCAT-----CTTCTCACTGTAGGGAAA chr1B_1010 ------------TTGTTGACAAGGTGA-----CTTCTCACTGTAGGGAAA chr1B_1186 ------------TTGCTGACAAGGCAT-----CTTATCGATGTAGGGAAT chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----------------------------------------------S--- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GCTTGTGAGTACCACTGTGGCCGTG------------------------- chr1B_1_TraesCS1B01G004000 GCTTGTGAGTACCACTGTGGCCGTG------------------------- chr2A_139 GCTGATTTCGGATGTATTTTAGTGCTTCATGATCACTATACAAAATAAAG chr7B_341 GATTGAGAATAGGTGAGAA------------------------------- chr3A_946 GCTTGAGAACAGGACTGTGGCCGTG------------------------- chr1A_947 TCTAGAGAATAGGTCCGTGGCGGTG------------------------- chr3D_947 GCTTGGGAATAGGACTGTGGCAGTG------------------------- chr3B_947 GCTTGGGAATAGGACTGTGGCAGTG------------------------- chr1B_952 GCTTGTGAGTACCACTATGGCCGTG------------------------- chr1A_981 GCTTGAGAATAGGATTGTTGCCGTG------------------------- chr1B_1010 GCTTGAGAATAGTACCGTGGCCGTG------------------------- chr1B_1186 TCTTGAGAATAGGACCGTGGCGGTA------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TCTTGATGTAGTAGGTAATGCCTCCAGTGTTGCAATGCTCGAACCACTGC chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 ATACAACTCAGCTTCATAAGTGGAATAGTGTATTTGTGCACATGTCAGTT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------AAGAGGTTGACCA chr1B_1_TraesCS1B01G004000 -------------------------------------AAGAGGTTGACCA chr2A_139 TCTCACTGAAGAAAGACACAGGACGAGATTCTTGGCTAAGAACATCACCA chr7B_341 ------------------------------------------------AA chr3A_946 -------------------------------------AAGAGGATGTCCA chr1A_947 -------------------------------------AAAAGGATGTCAA chr3D_947 -------------------------------------AAGAGGATGTCCA chr3B_947 -------------------------------------AAGAGGATGTCCA chr1B_952 -------------------------------------AAGAGG-TGACCA chr1A_981 -------------------------------------AAGAAGATGTCCA chr1B_1010 -------------------------------------AAGAGGATGTTCA chr1B_1186 -------------------------------------AAAAGGATGTCAA chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------S------ forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ATACGCTTA-----------TGGATGAAAAGGAATTCCACCA-------- chr1B_1_TraesCS1B01G004000 ATACGCTTA-----------TGGATGAAAAGGAATTCCACCA-------- chr2A_139 ATTCCTTTTCCTGATGCATCACAATCCACTTCAAACAACTTGTTAAAATC chr7B_341 ATACCTTAA-----------AAAATGCACACTAAACAGTGGATAATAATC chr3A_946 ATACGTATA-----------TGTACGAGAAGGAGTTCCAGCG-------- chr1A_947 ATACGTATG-----------AGTATGAGAAGGAGTACGTTCG-------- chr3D_947 ATATGTATG-----------TAGATGAAAGGGAGTTCCACCG-------- chr3B_947 ATACGTTTG-----------TAGATGAAAGCGAGTTCCACCG-------- chr1B_952 ATACGCTTA-----------TGGATGAAAAGGAATTCCACCA-------- chr1A_981 ATACATATA-----------TGCATGAGAAGGAATTCCAGCA-------- chr1B_1010 ATACTTACA-----------TGCATGAGAAGGAGTTCCGGCA-------- chr1B_1186 ATACGTATA-----------AGTATGAGAAGGAGTACCTCCG-------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 CGGCAAGGCTAGGCAATCAGTGGATGCCACTTTGGCCTTAATCTCCTCGA chr7B_341 AAGCATGGCT---------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 AAGCTTGCCTCGCTTCTTCCGTTAATACAAAAGCTCCACCTCGTTTCATG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 CAATCAGTGAAAGGTGCCATGATTGTGCTGAAGTTGCGAATAAAGCGTCT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 ATAAAAAGAGGCAAGCCCATGAAAGCTACGAGCTTCAGTTAATGTGCGTG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 GAGCTGGCCAACTAAGAATTGCTTCAACCTTGCTTGGATCAACTTGTAAG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 CCTCTTCCAGACACAATAAACCCGAAGAAGTTGACTGAAGAGACCAACAA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TTCACACTTCTTTGGATTAGCATACAACTGCTCACGCCGTAAAGCACATA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 ACACTTCTCTCAAGTGTTGCAGGTGGTCTTCCATGCTACTGCTATATACT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 AGTATGTCATCAAAATATACGACAACAAATTTTCCGATAAAAGGCCGTAA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TACATGATTCATCAACCTCATAAATGCACTTGGAGCATTAGAAAGACCGA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 AAGGCATTACTAACCATTCTTAGAGCCCGTCTCTTGTCTTGAAAGCCGTC chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TTCCACTCATCGCCTGGACGGATCCTTAATTGGTGGTACCCACTCTTGAG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 ATCAATCTTTGAAAACACCACTGCCCCTGCTAAATTATCCAACATATCAT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 CGAGTCGAGGTATAGGAAATCGATACTTAATCGTTATCTTATTTATTGCT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 CGAGAATCAACACACATGCGCCATGAACCATCTTTTTTTGGTGTCAGGAG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TGCAGGGACAACACATGGGCTTAGGCTAGGTTGAATAAAACCTTTATCTA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 ATAGTTCTTGCAGTTGACGATTTAGTTCCTCATACTCTTTGGGATTCATT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ------------------------------------------------AG chr1B_1_TraesCS1B01G004000 ------------------------------------------------AG chr2A_139 CGATAAGCCGGACGATTTGGCAAACTAGCTCCTGGTACTAAATCAATCTG chr7B_341 -------------------------------------------------- chr3A_946 ------------------------------------------------AG chr1A_947 ------------------------------------------------AG chr3D_947 ------------------------------------------------AG chr3B_947 ------------------------------------------------AG chr1B_952 ------------------------------------------------AG chr1A_981 ------------------------------------------------AG chr1B_1010 ------------------------------------------------AG chr1B_1186 ------------------------------------------------TG chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AAGTTGAATGTCTCATGAT------------------------------- chr1B_1_TraesCS1B01G004000 AAGTTGAATGTCTCATGAT------------------------------- chr2A_139 ATGTTGAATGTCTCGCATGGGAGGTAATACAGAAGGAAGCTCCTTTGGAA chr7B_341 -------------------------------------------------- chr3A_946 AAGTTGAATGTCTCATGAT------------------------------- chr1A_947 AAGTTGAATGCCTCATGAA------------------------------- chr3D_947 AAGTTCAATGTCTCATGAT------------------------------- chr3B_947 AAGTTCAATGTCTCATGAT------------------------------- chr1B_952 AAGTTGAATGTCTCATGAT------------------------------- chr1A_981 AAGTTGAATGTCTCATGAT------------------------------- chr1B_1010 AAATTGAATGTCTCATGAT------------------------------- chr1B_1186 AAGTTGAATGTCTCATGAT------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 AGACATCCGAAAATTCTTCCAATAAGTCATGTGCCTCCTTTGGTATGCCA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 ACTTCACTCTTCTGCTCTGAAAGCAGTAGCAGATATACGCCTCCTTCTAT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 TGCTTCACGCATAAATCTCTTACAAGATATGAGACTTGTGGTGCGTGATG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ------------------------------------------GGTGAAAC chr1B_1_TraesCS1B01G004000 ------------------------------------------GGTGAAAC chr2A_139 ATTCAGAACTCTTGGATTTGACTAACTCATCCTCTTTCACTGGGTTAAAC chr7B_341 -------------------------------------------------- chr3A_946 ------------------------------------------GGTCAAGC chr1A_947 ------------------------------------------GGTGAAGC chr3D_947 ------------------------------------------GGTTAAAC chr3B_947 ------------------------------------------GGTTAAAC chr1B_952 ------------------------------------------GGTGAAAC chr1A_981 ------------------------------------------GGTGAAGC chr1B_1010 ------------------------------------------GGCGAAGC chr1B_1186 ------------------------------------------GGTGAAGC chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ACAAAAATATAGTACGGTTTCTGGGATACTGTGCTGACAGACAAGGGAGT chr1B_1_TraesCS1B01G004000 ACAAAAATATAGTACGGTTTCTGGGATACTGTGCTGACAGACAAGGGAGT chr2A_139 ACAAACTTTTGGCCATCTTTTATGACAGTATATGTGTGCTTACGGCCATC chr7B_341 -------------------------------------------------- chr3A_946 ACAAAAATGTAGTACGGTTTCTGGGATATTGTGCTGACACACAAGGGAGT chr1A_947 ACAAAAATGTAGTGCGATTTCTGGGATATTGTGCTGACACACAAGGCAGT chr3D_947 ACAAAAATATAGTACGGTTTCTGGGATATTATGCTGAAACACATTGGACT chr3B_947 ACAAAAATATAGTACGGTTTCTGGGATATTATGCTGAAACACATTGGACT chr1B_952 ACAAAAATATAGTATGGTTTCTGGGATACTGTGCTGACAGACAAGGGAGT chr1A_981 ACAAAAATATAGTACGGTTTCTCGGTTATTGTGCCGACACGCAAGGTAGT chr1B_1010 ACAAAAATATAGTGCGTTTTCTAGGATACTGTGCCGACACACAAGGGACT chr1B_1186 ACAAAAATATAGTACGGTTTCTGGGATATTGTGCTGATACGCAAGGCAGT chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ATGGAAAGGTGCAATGAAAAATTCATCATGGCTGACGTACACCAAAGGTT chr1B_1_TraesCS1B01G004000 ATGGAAAGGTGCAATGAAAAATTCATCATGGCTGACGTACACCAAAGGTT chr2A_139 ATG------------------TACAGCATGGCGGCCATACTGCCAAGGTC chr7B_341 -------------------------------------------------- chr3A_946 ATGGAGAAGTACGATGGAAAATTCGTCATGGCAGATGTACAACAAAGGTT chr1A_947 ATGTTAAAGTACGAAGGAAAATTGGTCATGGCCGATGTACGACAAAGGTT chr3D_947 ATGGTAACCCAGGAGGGAAAATTCGTCATGGCAGATGTAAACCAAAGATT chr3B_947 ATGGTAACCCAGGAGGGAAAATTCGTTATGGCAGATGTAAACCAAAGATT chr1B_952 ATGGAAAGGTGCAATGAAAAATTCATCATGGCTGATGTACACCAAAGGTT chr1A_981 GTGGAAAGGTACAAAGGAAAATTCGTCATGGCGGATGTACAAGAAAGGTT chr1B_1010 GTGGCAAGGGACAACGGAAAATTCATCATGGCAGATGTGCTACAAAGGTT chr1B_1186 ATGTTAAAGTACGAAGGAAAATTGGTCATGGCCGATGTACGACAAAGGTT chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GCTCTGCTTC---------------------------------------- chr1B_1_TraesCS1B01G004000 GCTCTGCTTC---------------------------------------- chr2A_139 TTCCTAGAATTAGGTGGCTAACATCCATATCAACAACATCACATTCTACC chr7B_341 -------------------------------------------------- chr3A_946 GCTCTGCTTC---------------------------------------- chr1A_947 GCTTTGCTTC---------------------------------------- chr3D_947 GCTCTGCTTC---------------------------------------- chr3B_947 GCTCTGCTTC---------------------------------------- chr1B_952 GCTCTGCTTC---------------------------------------- chr1A_981 ACTCTGCTTT---------------------------------------- chr1B_1010 GCTCTGCTTT---------------------------------------- chr1B_1186 GCTCTGCTTC---------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 --------GAGTATCTTCCTCATGGGAGCCGTTATGAGTACATCACTGGT chr1B_1_TraesCS1B01G004000 --------GAGTATCTTCCTCATGGGAGCCGTTATGAGTACATCACTGGT chr2A_139 TCATCAAAGAATTTATTGCCAACGGAGAAAGACACCAAACACCGAAATTT chr7B_341 -------------------------------------------------- chr3A_946 --------GAGTATCTTCCTAAAGGGAGTCTGCATGAGTATATCACTGG- chr1A_947 --------GAGTTTGTTCCCAAAGGAAGTCTTCGTGAGTATATCACGGG- chr3D_947 --------GAGTATCTTCCTAATGGGAGCCTTGATAAGTATATCACTGG- chr3B_947 --------GAGTATCTTCCTAATGGGAGCCTTGATAAGTATATCACTGG- chr1B_952 --------GAGTATCTTCCTAATGGGAATCTTTATGAGTATATCACTGG- chr1A_981 --------GAGTATCTTCCTAGAGGAAGTCTTCATGAGTATATCACTGG- chr1B_1010 --------GAATATCTTCCTAAAGGGAGTCTTCAGGAGTATATCACTGG- chr1B_1186 --------GAGTTTCTTCCTAAAGGGAGTCTTCGTGGGTATATCACGGG- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --------------------S-------------------S--------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ATAGGATCATGT-----GGCACGCAG----AGTTT--------------- chr1B_1_TraesCS1B01G004000 ATAGGATCATGT-----GGCACGCAG----AGTTT--------------- chr2A_139 TACCTTCGATACCTTATCAGATTTGAACCAGCGCATGTTATAAGGACAAG chr7B_341 -------------------------------------------------- chr3A_946 -TAGGATTATGTACTATGTACTGG-------TTTT--------------- chr1A_947 -TAGGATCATGT-----GGC--GCAA----AGTTT--------------- chr3D_947 -TAGGATCATGT-----GGCACGCAA----AGGTT--------------- chr3B_947 -TAGGATAATGT-----GGCCCGCAA----AGGTT--------------- chr1B_952 -TAGGATCATGT-----GGCATGCATGTACATTTT--------------- chr1A_981 -TAGGATCATGT-----GGCATGTAA----AGTTT--------------- chr1B_1010 -TAGGATTATGTCATGTGGCATGCAA----AGTTT--------------- chr1B_1186 -TAGGATCATAT-----GGC--GCAA----AGTTT--------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs S------------------------S------------------------ forward_226 -------------------------------------------------- reverse_4001 ATAGGATCATGTGGCACGCA------------------------------ forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -----------------------TTCTTAACCTTTATTTTCATTGTTAAA chr1B_1_TraesCS1B01G004000 -----------------------TTCTTAACCTTTATTTTCATTGTTAAA chr2A_139 GATGATTTTCCTTCTTAAGCCCAAGTTTATTTACTGCCTCCTCTGATATA chr7B_341 -------------------------------------------------- chr3A_946 -----------------------ATTTTAACCTTTGTTTCCACTGTTAAA chr1A_947 -----------------------CTTTTATCCTTTATATTCATCGTTAAA chr3D_947 -----------------------CTTTTAACCTGTATTATCATCATTGAA chr3B_947 -----------------------CTTTTAACCTGTATTATCATCATTGAA chr1B_952 -----------------------TGTTTAATCTCTTTTTCCATTACTAAA chr1A_981 -----------------------TATTTAACCTATATTGTCATTATTAGA chr1B_1010 -----------------------CTTTTAACTTATATTTTCTTTGTTAAA chr1B_1186 -----------------------CTTTTATCCTTTATTTTCATCGTTAAA chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------S------------------------ forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GATCATATGCTTCAGTATCCCATATATAG-TTTTCACCGTGTCGTATACT chr1B_1_TraesCS1B01G004000 GATCATATGCTTCAGTATCCCATATATAG-TTTTCACCGTGTCGTATACT chr2A_139 GTATTTTCCCAGCTGCCAT------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 GTTTGTTTGGTTGGGTATCC---ATATAG-CACTCACCATGTCGTACACT chr1A_947 TTTCATACGGTTCAGTATCCCACATATTTATTCTCACTATGTCATATGCT chr3D_947 GATCATCTATTTTCAG----------------TTCACCATGTCGCATACT chr3B_947 GATCATCTATTTTCAG----------------TTCACCATGTCGCATACT chr1B_952 GATCATATCATTCAGCATCCCAA--------------------------- chr1A_981 GATCATAT------------------------------------------ chr1B_1010 GTTCATATGGTTAAGTATCCCACGTGTAG-TACTCGTTGTGTTGTATGCT chr1B_1186 TTTCACATGGTTCAGTATCCCACATAT-------CACTATGT-ATATGCT chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----------------------S--------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ATCTATACTTTCCAATATTAAA-----------------GTTTT-----G chr1B_1_TraesCS1B01G004000 ATCTATACTTTCCAATATTAAA-----------------GTTTT-----G chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 CTTTGTACAATTGAACATA-AG-----------------GACTT-----G chr1A_947 ATCT---------------------------------------------- chr3D_947 ATCTATACATTTGAAT---------------------------------- chr3B_947 ATCTATACATTTGAAT---------------------------------- chr1B_952 ---------------TATTAAA-----------------GATTTGATAGG chr1A_981 -------------------------------------------------- chr1B_1010 ATCTATACATTCAAATATTGAG-----------------GACTT-----G chr1B_1186 ATCTTCTTTTACATAATGACCACGTATGTACTATCTATAGACTT-----G chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------S---------------------------S--------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AAGTATGTCAAATAATAGGAAACTTCCTTTATCCTTTCC-CTTTCGTAGA chr1B_1_TraesCS1B01G004000 AAGTATGTCAAATAATAGGAAACTTCCTTTATCCTTTCC-CTTTCGTAGA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 AAGTATTTCACATAATACTGAACTTCCTTTATTCTTTCC-CCTTTGTAGA chr1A_947 -------------------------------------------------- chr3D_947 AAGTACGTCAAATAATACAAAGCTGCCTTTATCATCTCC-CCTTTGTAGA chr3B_947 AAGTACGTCAAATAATACGAAGCTGCCTTTATCATGTCC-CCTTTGTAGA chr1B_952 AAGTATGTCAAATAATACTAAACTTCCTTTATCTTCTTC-CTTTTGTAGA chr1A_981 -------------------------------------------------- chr1B_1010 CAGTATGTCACATAATTCTAATCTTCCTCTGTCCTCTCC-GCTTTGTAGA chr1B_1186 AAGTATGTCAAATAATACTCGGCTTGCTTTATCCTCTCCTCCTTCGTAGA chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -----------------S-------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TACAACTCACAGACTTCAGTGGAGAGACCGTTTTCAAATTATCACAGGAA chr1B_1_TraesCS1B01G004000 TACAACTCACAGACTTCAGTGGAGAGACCGTTTTCAAATTATCACAGGAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 TACATCTAGCGGACTTCCGTGGAGAGACAGATATCGTATTATTGAAGGAG chr1A_947 -------------------------------------------------- chr3D_947 TACATCTCGTGGACTTCAGTGGAGAGACCGCTTTCAAATTATCACAGGAA chr3B_947 TGCATCTTGTGGACTTCAGTGGAGAGACCGCTTCCAAATTATCACAGGAA chr1B_952 TACATCTCACAGACCGAAGTGGAGAGACCATTTTCAAATTATCACAGGAA chr1A_981 -------------------------------------------------- chr1B_1010 TACATCTTACGAACATCAGTGGAGAGACCGGTATCAAATAATCGCAGGAA chr1B_1186 TACATCTTGCGGACTTCACTGGACATACCGGTATCAAATTATAATAGGAA chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----S--------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTTGTCAGGGGTTACACCATCTTCATCAGAATAATATTGTCCACTTAGAT chr1B_1_TraesCS1B01G004000 TTTGTCAGGGGTTACACCATCTTCATCAGAATAATATTGTCCACTTAGAT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 TTTGTCAGGGATTACACTATCTTCATCAGAAAAATATTGTCCACTTAGAT chr1A_947 -------------------------------------------------- chr3D_947 TTTGTCAGGGGCTACATTATCTTCATCAGAACAGATTTCTGCACTTAGAT chr3B_947 TTTGTCAGGGGCTACATTATCTTCATCAGAATAGCTTTATGCACTTAGAT chr1B_952 TTTGTCAGGGGTTACACCATCTTCATCAGCATAATATTGTCCACTTAGAT chr1A_981 -------------------------------------------------- chr1B_1010 TTTGTCAAGGGTTACATTATCTTCATCAGAAAAATATTGTCCACTTTGAT chr1B_1186 TTTGTCAGGGGTTACATTGTCTTCATCAAAATAATATTGTCCACTTAGAT chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTAAAGCCCGCAAATATATTATTGGATGCTAATATGGTACCAAAAATTGC chr1B_1_TraesCS1B01G004000 TTAAAGCCCGCAAATATATTATTGGATGCTAATATGGTACCAAAAATTGC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 CTAAAGCCGGCAAATTTATTGTTGGATGATAATTTGGTGGCAAAAATTGC chr1A_947 -------------------------------------------------- chr3D_947 CTAAAGCCCACAAACATATTGTTGGATGATAATTTAGTACCAAAAATTGC chr3B_947 CTAAAGCCCACAAACATATTGTTGGATGATAATTTAGTACCAAAACTTGC chr1B_952 TTAAAGCCCGCAAATATACTGTTGGATGCTAATCTTGTACCAAAAATTGC chr1A_981 -------------------------------------------------- chr1B_1010 CTAAAGCCCGCTAATATATTGTTGGATGATAATTTAGTACCAAAAATTGC chr1B_1186 CTAAAGCCAGAGAATATATTGTTGGATGATAATTTGGTACCAAAAATTAC chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --------------------S------------S---------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TGATTTCGGTCTATCAAGGTGCTTTAAAGAAATGCAAAGCCGAGATCTTA chr1B_1_TraesCS1B01G004000 TGATTTCGGTCTATCAAGGTGCTTTAAAGAAATGCAAAGCCGAGATCTTA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 TGATTTCGGTCTATCGAGGTGCTTTGGTGAAATGCAAAGCCGGGTTATTA chr1A_947 -------------------------------------------------- chr3D_947 TGATTTCGGTCTATCTAGATGCTTTGTTGAATCACAAAACTGGGCTAGTA chr3B_947 TGATTTCGGTCTATCTAGATGCTTTGTTGAATCACAAAACTGGGCTAGTA chr1B_952 TGATTTTGGTCTATCAAGGTGCTTTAAAGAAATGCAAAGCCGAGTTTTTA chr1A_981 -------------------------------------------------- chr1B_1010 TGACTTCGGCCTATCAAGGTGCTTTGAAGAAATGAAAAGCCGGATTATTA chr1B_1186 TGATTTTGGTCTATCAAGGTGCTTT------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --------------------------------------------S-S--- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CAAGGAAAGGA---GGAACGATGTAAGTTTGCTAATCCTATTGAAAATTA chr1B_1_TraesCS1B01G004000 CAAGGAAAGGA---GGAACGATGTAAGTTTGCTAATCCTATTGAAAATTA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 CCGAGAACATAGCCGGAACATTGTAAGTTTTCTAAGCCCCTTTAAAGTTC chr1A_947 -------------------------------------------------- chr3D_947 CTTCG---ATACGTCGAACAGCGTAAGTTTGCTAAGCCTCTTGAAAGTTC chr3B_947 CTTCG---ATACGTGGAACAGCGTAAGTTTGCTAAGCCTCTTGAAAGTTC chr1B_952 CCGGGAAAGGA---GGAACGATGTAAGTTTGCTAAGCCTATTGAAAATTA chr1A_981 -------------------------------------------------- chr1B_1010 CTACG---ATAGCTGGAACACGGTAAGTTTGCTAAGCCTCTTGAAAGTTC chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -S---------------------------------S-------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AAAAAAAATGATG---CTATGACTTGTACTAACACATGCATTACCTTGCT chr1B_1_TraesCS1B01G004000 AAAAAAAATGATG---CTATGACTTGTACTAACACATGCATTACCTTGCT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 AAACT--TTATTTCCACTAAGCTTTATACTTAGAC-TGTAGTATCTTTGT chr1A_947 -------------------------------------------------- chr3D_947 AATCTTTTTCCTTCTTCTATGATTTATACTAATAC-TACAACATCTTGCT chr3B_947 AATCTTTTTCCTTCTTCTATGATTTATACTAACAC-TACAACATCTTGCT chr1B_952 AAAAAAAATGATG---CTATGACTTGTACTAACACATGCATTACCTTGCT chr1A_981 -------------------------------------------------- chr1B_1010 AGTCATTTTC----TTCTATAATTTAACTATCATGGACT--CATACTGCA chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GATTAACCAATCACATGGATATACAA-TTATGCAGTGGATATACGGCACC chr1B_1_TraesCS1B01G004000 GATTAACCAATCACATGGATATACAA-TTATGCAGTGGATATACGGCACC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 CATTGATCAATCACACGGATATATATTTGATATAGGGGATATTTGGCACC chr1A_947 -------------------------------------------------- chr3D_947 CATTAACCAATCACATGGATATATTT-TTTTGCAGTGGATATATAGCACC chr3B_947 CATTAACCGATCACATGGATTTC-TT-TTTTGCAGTGGATATATAGCACC chr1B_952 GATTAACCAATCACATGGATATATAA-TTATGCAGTGGATATACAGCACC chr1A_981 -------------------------------------------------- chr1B_1010 CATTATCCAATCACATGGATATATAT-TCATGCAGCGGATACATGGCACC chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -----------------------S-------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AGAATTTTTTGACCGTACTGAAATCAGATACCGCCATTCGTACCGGCTTG chr1B_1_TraesCS1B01G004000 AGAATTTTTTGACCGTACTGAAATCAGATACCGCCATTCGTACCGGCTTG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 AGAATTTGGTAACGGTGTAATCACGTACCAGT---------------TTG chr1A_947 -------------------------------------------------- chr3D_947 CGAATATTATAACTATACTGAAGTCACACACCAGCTTTCGCCCCTTCTTG chr3B_947 CGAATATTATAACTATACTGAAGTCACACACCAGCTTTCGCCCCTTCTTG chr1B_952 AGAATTTTTTGACAGTACTGAAATCAGATACCGGCATTCGTACCGGCTTG chr1A_981 -------------------------------------------------- chr1B_1010 AGAATTGTGTAACCATACAGAAATCAAATATCGGCATTCGCCCCTGCTTG chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---------------------------------S---------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ATATCTATAGTCTCGGAGTAATAATCATAGAGATACTCACCGGAAAGAAG chr1B_1_TraesCS1B01G004000 ATATCTATAGTCTCGGAGTAATAATCATAGAGATACTCACCGGAAAGAAG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 ATATCTACAGTCTCGGTGTAATAATCATAGAGATACTGACTGGAAAGAAG chr1A_947 -------------------------------------------------- chr3D_947 ATATCTATAGTCTTGGTATAATAATAATAGAGATACTCACCAGCCAGAAG chr3B_947 ATATCTATAGTCTTGGTATAATAATAATAGAGATACTCACCGGCCGGAAG chr1B_952 ATATCTATAGTCTCGGTTTAATAATCCTAGAGATACTCACCGGAAAGAAG chr1A_981 -------------------------------------------------- chr1B_1010 ATATCTACAGTCTTGGTGTAATAATCTTAGAGATACTCACTGGAAACAAG chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----------------S--------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GGGTATCATGATGTTGACAAGGTAAGCACAAATTAGGTCTTCTTTTGAAA chr1B_1_TraesCS1B01G004000 GGGTATCATGATGTTGACAAGGTAAGCACAAATTAGGTCTTCTTTTGAAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 GGGTACCACGCTGTTGACAATGTAAGAACAATTTAATTCTTATTTCGAAA chr1A_947 -------------------------------------------------- chr3D_947 TGGAATATTGACGCTGATGAGGTAAGAACAAC-TAGGTCTTCTTTCAAAA chr3B_947 GGGAATATTGACGCTGATGAGGTAAGAACAAC-TAGGTCTTCTTTCAAAA chr1B_952 GGGTATCACGATGTTGACAAGGTAAGCACAAATTAGGTCTTCTTTTGAAA chr1A_981 -------------------------------------------------- chr1B_1010 G------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ATAAAAGTTGTACGTTCAAAC--------------CTTCTCTTTTAAGAT chr1B_1_TraesCS1B01G004000 ATAAAAGTTGTACGTTCAAAC--------------CTTCTCTTTTAAGAT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 ATAAAGGTTGTACTTCAAA------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 ATAAAGGTTGTACTTTAAAACTAATGCATTACTTGCTTATCTGTTTAGAT chr3B_947 ATAAAGGTTGTACTTTAAAACTAATGCATTACTTGCTTATCTTTTTAGAT chr1B_952 ATACAAGTTGTACTTCGAAACCAATGCATTACTTGCTTCTCTTTTAAGAT chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------S--S--------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GCAGCATATTATCACTCTATGCCAATTCTAGCAACAAATCCACCACAGAC chr1B_1_TraesCS1B01G004000 GCAGCATATTATCACTCTATGCCAATTCTAGCAACAAATCCACCACAGAC chr2A_139 -------------------------------------------------- chr7B_341 --------------------------------------TCGGCCATTGAA chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 GCAGCATAATATCTCTCTCTTTCATTTTTAGCAATAAATCCACCATGGAC chr3B_947 GTAGCATAATATCTCTCTCTTTCATTTTTAGCAATAAATCCACCATGGAC chr1B_952 GCAACATAATATCACTCTCTGCCAATTTTAGCAACAAATCCACCACAGAC chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --------S---------S--------S---------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TCTACATTTTAGCTAAAACACTTAG--AGATTCTACAACATTATAAATAT chr1B_1_TraesCS1B01G004000 TCTACATTTTAGCTAAAACACTTAG--AGATTCTACAACATTATAAATAT chr2A_139 -------------------------------------------------- chr7B_341 TCAACAGTTTTGCTGAAGCACATCT--AGATGTACTCT------------ chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 TACATATTTTGACTGAAAGCCTTAAAAAGATCCTGTGACATTATAAATAT chr3B_947 TACATATTTTGACTGAAAGCCTTAAAAAGATCCTGTGACATTATAAATAT chr1B_952 TCTACATTTTAGCTAAAATACTTAG--AGATTCTACAACATTATAAGTAT chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GAAAACTAGGATTTGAACCTCTGAT----------ATGGAACACACATAG chr1B_1_TraesCS1B01G004000 GAAAACTAGGATTTGAACCTCTGAT----------ATGGAACACACATAG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 GAAAACTAGGATTTGAAGGTTTGAACCTCTAGTTGATGGAAGGCACTCAC chr3B_947 GAAAACTAGGATTTGAA--------------------------------- chr1B_952 GAAAAGTAGGATTTGAACCTCTGAT----------AGATGGAACAC---- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -----------------------------------------S----SS-S forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AACTTTGCCACACTAAAGTGTGGTAGAATA---------------ACATC chr1B_1_TraesCS1B01G004000 AACTTTGCCACACTAAAGTGTGGTAGAATA---------------ACATC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 AACCCTACCACACTATATATGTAGAAAAGAAAGACATGTTGAACTACATC chr3B_947 -------------------------------------------------- chr1B_952 ------------------------------------------ACAACATC chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---SS-S--------S-SSSSSSS-S--S--------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TGAAGCATTGTCATGTTGCGCCAATATTTAGCATTTGAAAATCCTACAGA chr1B_1_TraesCS1B01G004000 TGAAGCATTGTCATGTTGCGCCAATATTTAGCATTTGAAAATCCTACAGA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 TGAAGTACTGTCATGTTGCACCGATATTTAGCACTTCAAAATCCCTCAAA chr3B_947 -------------------------------------------------- chr1B_952 TGAAGCATTGTCATGTTGCGCCAATATTTAGCATTTCAAAATCCCACAAA chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------------------------------S-------S---S- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTTTAC---GTTGAACCAGATTGAAATCATGATTTTAGCTGAAAAATTTA chr1B_1_TraesCS1B01G004000 TTTTAC---GTTGAACCAGATTGAAATCATGATTTTAGCTGAAAAATTTA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 TTAGCA--TGTTGAACCAGATTGAAATCATGGTTTTAG------------ chr3B_947 -------------------------------------------------- chr1B_952 TAAGTTTTTGTTTAACCAGATTGAAATCATGATATTAGCTGGAAAATTTT chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --SSSS-----------------------------------S-------S forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GTGCAACATGGAGTATTTTGAAAAACATTGTTCAATACTTGATTGGTAAG chr1B_1_TraesCS1B01G004000 GTGCAACATGGAGTATTTTGAAAAACATTGTTCAATACTTGATTGGTAAG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 GTGCAATATGGAGTATTTTGAAAAACATTGTTCAATACATGATTGGTAAG chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------S-------------------------------S----------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AATTAAATGGTCAATGACTGAATCTACCTTTCCTTTTTCCTGTTGCCTAA chr1B_1_TraesCS1B01G004000 AATTAAATGGTCAATGACTGAATCTACCTTTCCTTTTTCCTGTTGCCTAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 AAATAAATGGTCCATGACTGAATCTACTTTTCC---TTCCTATTGCCTAA chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --S---------S--------------S-----SSS-----S-------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TAAGGAGTATAATT-TTGGTAACACATTGAAAGGAGGAAATGAAAAATTG chr1B_1_TraesCS1B01G004000 TAAGGAGTATAATT-TTGGTAACACATTGAAAGGAGGAAATGAAAAATTG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 TAAGAAGTATAATTCTTGGTAACACATTGAAAGGAGGAAAGGAAAAATTG chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----S-----------------------------------S--------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GGTACACATGGATCAAGCAACATTTGTTTTTGACTGTCCGAGCATCAGGA chr1B_1_TraesCS1B01G004000 GGTACACATGGATCAAGCAACATTTGTTTTTGACTGTCCGAGCATCAGGA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 GGTACACATGGATCAAGCAACATTTCTTTTTGACTGTCCGAGCATCAGGA chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------S------------------------ forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CATCATCGCGATTTACAAAAAAGGACAGCCCGGTGCATTTAGCCCCCGCT chr1B_1_TraesCS1B01G004000 CATCATCGCGATTTACAAAAAAGGACAGCCCGGTGCATTTAGCCCCCGCT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 CATCATCGCGATTTACAAAAAAGGACAGCTCGGTACACGTAGCTCCCACT chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -----------------------------S----S--SS----S---S-- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TGCCCAGGGTCCGGGGAAGGGTCTGACCACTTTGGGTCTATTGTGCATAG chr1B_1_TraesCS1B01G004000 TGCCCAGGGTCCGGGGAAGGGTCTGACCACTTTGGGTCTATTGTGCATAG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 TGCACACGGTCCGGAGAAGGGTCTGACTACTTTGGGTTTATTGTACATAG chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---S--S-------S------------S---------S------S----- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 --------------GGAAGGGTCTGACCACTTTGG--------------- forward_771 -------------------------------------------------- reverse_5395 --------------------------------------------GCATAG forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CCTTTCCCTTACAGAGAAATGAGCATGCCCCTATTCGTTTTGATGAATGA chr1B_1_TraesCS1B01G004000 CCTTTCCCTTACAGAGAAATGAGCATGCCCCTATTCGTTTTGATGAATGA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 TCTTTCCATTACAGAGAATCGAGCATGCCCCTATTCATTTTGATGAATGG chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs S------S----------SS----------------S------------S forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 CCTTTCCCTTACAGAGA--------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -----------------AATGAGCATGCCCCTATTCG------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GATAATGCAAACTCACATGGCCATATATATGAGAAGGAATAAAATCCAGC chr1B_1_TraesCS1B01G004000 GATAATGCAAACTCACATGGCCATATATATGAGAAGGAATAAAATCCAGC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 GAAAATGCAAACTTACATGGCCATATATATGAGGACAGAAAAC--CCAGC chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --S----------S-------------------S-SSS-S--SSS----- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTACTTATGTGGGAGAGTGGCTATACAATCTCACCACCCTTGTCTAAGTT chr1B_1_TraesCS1B01G004000 TTACTTATGTGGGAGAGTGGCTATACAATCTCACCACCCTTGTCTAAGTT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 TTACTTATGTGGGAGAGTGGCTATACAATCTCACCACCCTTGACTAAGTT chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------------------------------------S------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ATCGCCAACCTAAACTTGGGTGCATATTTATTATTATTTGAATTTATACA chr1B_1_TraesCS1B01G004000 ATCGCCAACCTAAACTTGGGTGCATATTTATTATTATTTGAATTTATACA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 ATCTCCAACCTGAACTTGGATGCATATTTCTTATTAATTGAATTAATAAA chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---S-------S-------S---------S------S-------S---S- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 ---GCCAACCTAAACTTGGGTGC--------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TATTTTCCTCTGATATGTGAGATGAAACAAGGGGCGGACCCTAGTTAAGT chr1B_1_TraesCS1B01G004000 TATTTTCCTCTGATATGTGAGATGAAACAAGGGGCGGACCCTAGTTAAGT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 TATTTTCTTCTTATATGTGAGA-GAAACTAGGGGCGCACCCTAGTTAAGT chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 --------------ATGTGAGAAGAAACCAGA-GCGCACCTTAATTAAGT chr1B_3020 ----------------------------------------------AAGT chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------S---S----------S-----S-------S------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -----------------TGAGATGAAACAAGGGGCGG------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TCTTGGAAATTTTTTATT-GTTAGTTTGAAGTCTTAATATATGTGGTTTT chr1B_1_TraesCS1B01G004000 TCTTGGAAATTTTTTATT-GTTAGTTTGAAGTCTTAATATATGTGGTTTT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 TCTTGGGAAATTTTTATT-GTTAGTTTGAAGTCTTAATTTATGTGGTTAT chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TCTTGGGGAATTTTTGTTTGGTAGTTCGAAGTGTTATCTGATGGGGTTTT chr1B_3020 TCTTGGGGAATTTTTGCTTGGTAGTTTGAAGTGTTACCTGATGGGGTTTT chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------S--S----------------------------S----------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GCTTAAGCCGTAGACATCATGTATGAGGCTAGTATGTA-----TACGACA chr1B_1_TraesCS1B01G004000 GCTTAAGCCGTAGACATCATGTATGAGGCTAGTATGTA-----TACGACA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 ACGTAAGCTGTGGACATTATGTATGAGGATAGCATGTAG-----ACGACA chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GTATCAGCTGGTAACATAATTTATGGGCCTCGTATATATGTACTACTACA chr1B_3020 GTATCAGCTGGTAACATAACTTATGGGCCTCG--TATATGTACTACTACA chr1A_3117 -------------------------------------------------A chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --S-----S--S-----S-------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TACTTTAATTTCACA-TTGAAAATATGGTGCTTCTTTTCACAACTCACAA chr1B_1_TraesCS1B01G004000 TACTTTAATTTCACA-TTGAAAATATGGTGCTTCTTTTCACAACTCACAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 TACTTTAATTTCACA-TTGAAAATATGGTGCTTCTTTTCATAACTCACAA chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TACATTAATTTTGTGTTGCATAAGATGTCTCTTGTTTTAATAATACACTA chr1B_3020 TTCATTAATTTTGTGTTGCAAAATATGTCTCTTGTTTTCATAATACACTA chr1A_3117 TACATTAATTTTGTGTTGCAAAAGATGTCTCTTGTTTTCATAATACACTA chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----------------------------------------S--------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ACTCAATATGTAGGTAGTCGAAAGTTGGAGTAAGATGTTGGACATATCAC chr1B_1_TraesCS1B01G004000 ACTCAATATGTAGGTAGTCGAAAGTTGGAGTAAGATGTTGGACATATCAC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 ACTCAAT------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 ATATAATTCATAGGTAGTTGAAAGTTGGAGTGCCATATTGGAGAAACCAC chr1B_3020 TTATAATTCATAGGTAGTTGAAAGTTGGAGTGCCATATTGGAGAAACCAC chr1A_3117 ATTCAATTCGCATGTAGTACAAAGTTGGAGCGCCATAATGGAGAAACTAG chr1B_3176 ---------GTAGGTAGTCGAAAGTTGGAGTAAGATGTTGGACATATCAC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------SS----------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AGAGTGACGTACAGGTGGAACAGGTACGAGTATGTGCTGAGATAGGACTA chr1B_1_TraesCS1B01G004000 AGAGTGACGTACAGGTGGAACAGGTACGAGTATGTGCTGAGATAGGACTA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 AACGGGATGTACAACTGGAACAGGTACGAGTATGTGCTGAGATTGCAATG chr1B_3020 AGCAGGATGTACAACTGGAACAGGTACGAGTATGTGCTGAGATTGCAATG chr1A_3117 AGAGGGATGTACAACTGGAACAGGTACGAGTATGTGCTGAGATAGCAATG chr1B_3176 AGAGTGACGTACAGGTGGAACAGGTACGAGTATGTGCTGAGATAGGACTA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GAGTGCACCGACTTCAACCCGGCGAATAGACCGGATACAAAACATATAAT chr1B_1_TraesCS1B01G004000 GAGTGCACCGACTTCAACCCGGCGAATAGACCGGATACAAAACATATAAT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 AAGTGCATGGAGTTCAACCCGGCAAGGAGACCAGATACACAACATATTAT chr1B_3020 AAGTGCATGGAGATCAACCCGGCAAGGAGACCAGATACACAACATATTAT chr1A_3117 AAGTGCAGGGAGAGCAACCCGGCAAGGAGACCAGATTCACAACATATAAT chr1B_3176 AAGTGCACCGACTTCAACCCGGCGAATAGACCAGATACAAAACATATAAT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs S-------------------------------S----------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CAGTAGACTTGATGAAAGAGAAATTATGGACATATGTATCAAAACTAGCA chr1B_1_TraesCS1B01G004000 CAGTAGACTTGATGAAAGAGAAATTATGGACATATGTATCAAAACTAGCA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 CAGTGTCCTTGATGGAAGAGAAACTATAAATGGATATATTGAAAATAGCA chr1B_3020 CAGTGCCCTTGATGGAAGAGAAACTATAAATGGATATATTGAAAATAGCA chr1A_3117 CAGTGCGCTTGATGGAAGAGAAACTATAGATGGATATATTGAAAGTAGCG chr1B_3176 CAGTAGACTTGATGAAAGAGAAATTATGGACATATGTATCGAAACTAGCA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----------------------------------------S--------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TGATTACTTCACAGAAGGAAAGATCTCTCCCGGGTTATCCACGACATCCC chr1B_1_TraesCS1B01G004000 TGATTACTTCACAGAAGGAAAGATCTCTCCCGGGTTATCCACGACATCCC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TGATTACTTCACAGCAGGTAA-ATCACTCGCGTGGAG-----GACATACC chr1B_3020 TGATTACTTCACAGCAGGTAA-ATCACTCGCGTGGAA-----GACATACC chr1A_3117 TGATTACTTCACAGCAGGTAAAATAACTCGCGTGGAATCCATGGCATACC chr1B_3176 TGATTACTTTATAGAAGGTAAGATCTCTCCCGTGTCATCCATGACATCCC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------------S-------------S--S-----S-------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TCCCACAAAACTTA-TCTTGGGAGCTTGTC--------TACATCTCCATT chr1B_1_TraesCS1B01G004000 TCCCACAAAACTTA-TCTTGGGAGCTTGTC--------TACATCTCCATT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TCCCACAAAACATAATCTTGAGAGTTTGTGTACATAGAAGCATCTCCATT chr1B_3020 TCCCACACAACTTAATCTTGAGACTTTGTGTACATGCATGCATCTCCATT chr1A_3117 TCCCACCAAACTTAATCTTGAAACTTTGTGT----GCATACATCTCCATT chr1B_3176 TCCCACAAAACATAATCTTAGGAGCTTGTCTAT--------ATCTCCATT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TGCAATTTTGTTGCTCCAAG---CTAGCAGATGAGGGGAAGTTTACTTAA chr1B_1_TraesCS1B01G004000 TGCAATTTTGTTGCTCCAAG---CTAGCAGATGAGGGGAAGTTTACTTAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TGCGCTTTTATTGCTACAAT---CCAGTAGTTGAAGTGAAATATACTTAA chr1B_3020 TGCTCTTTTATTGCTACAAT---CCAGTAGTTGAAGTGAAATATACTTAA chr1A_3117 TGCTCTTTTATCGCTCCAAGCAGCCAGTAGGTGAAGTGAAATAGACTTAA chr1B_3176 TTCAA-TTTGTTGCTCCAAG---CTAGCAGATAAGGTGAAGTTTACTTAA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------------------------------S------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 ----------------CTCCAAGCTAGCAGATGAGGG------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTGGTTATTTGAACAGGTGAAAAATGCTTCAAATGAACTCCATAAAGATA chr1B_1_TraesCS1B01G004000 TTGGTTATTTGAACAGGTGAAAAATGCTTCAAATGAACTCCATAAAGATA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TTGGTTATTTGAACAGGCCAAAAATGCTACAAATGAGCGGTACCATGATA chr1B_3020 TTGGTTATTTGAACAGGCCAAAAATGCTACAAATGAGCGGTACCATGATA chr1A_3117 TTGGTTATTTGAACAGGTAAAAAATGCTATAACTGAGCGGTACCATGATT chr1B_3176 TTGGTAATTTGAACAGGTGAAAAATGCTTCAAATGAACTCCATAAAGATA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TGCCTAATGCTTCAGGAGAGAC-AAGCTCTGAGGTGGGTTCGCAGCTAAA chr1B_1_TraesCS1B01G004000 TGCCTAATGCTTCAGGAGAGAC-AAGCTCTGAGGTGGGTTCGCAGCTAAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 CACCTAATGCGCTAGGAGAGAC-AAGCTCTA------------------- chr1B_3020 CGCCTAATGCGCTAGGAGAGAC-AAGCTCTA------------------- chr1A_3117 CGCCTAATGCACTAGGGAGAGAAAACCTCTA------------------- chr1B_3176 CGCCTAATGCGTCAGAAGCGAC-AAGCTCTGAGGTGTGTTCGCAGCTAAA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs S---------S-------------------------S------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CATATCAGTAATTATTGATATATGATAAATTATATATGTGGTTACGAAAA chr1B_1_TraesCS1B01G004000 CATATCAGTAATTATTGATATATGATAAATTATATATGTGGTTACGAAAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 CATATCAGTAATTATTTATATATGATAAATTCTATATATGCTTACGGAAA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----------------S--------------S-----S--S-----S--- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TAGTTAACATTTGAAAGAATATTTGTATCATGCAAACAAAAATAGCAGCT chr1B_1_TraesCS1B01G004000 TAGTTAACATTTGAAAGAATATTTGTATCATGCAAACAAAAATAGCAGCT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 TA------------------------------------------------ chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AAACATATCTATTATCCCTTCATGATTGTTA--ACATTTGAAAGAATATT chr1B_1_TraesCS1B01G004000 AAACATATCTATTATCCCTTCATGATTGTTA--ACATTTGAAAGAATATT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------ATACCCTCATGACCTCTAAGACTTTGAAAACAAA--- chr1B_3020 -------------ATCCCCTCATGATCGCAAACACTTTGAAAACAAA--- chr1A_3117 -------------ATCCCCTCATGATCGCTAACACTTTGAAAAAAACATT chr1B_3176 ---------------------------GTTA--ACATTTGAAAGAATATT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSS-----S-------S----------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTTATCATGCAAACA------------------AAAA------------- chr1B_1_TraesCS1B01G004000 TTTATCATGCAAACA------------------AAAA------------- chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 ---AGTAGGCCAAACAAATAGAAGCACTAGAATAAAA------------- chr1B_3020 ---ATTAGGCAAAAGAAATAGAAGCACTAGAATAAAA------------- chr1A_3117 TTTATTAGGCGAAAG------------------AAATAGAAGCACTAGAA chr1B_3176 TTTATCATGCAAACG------------------TAAA------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --------------S----------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -----TAGTGTTGTTAAATTTG-CATGATTGTTATTAATAATATAAAATA chr1B_1_TraesCS1B01G004000 -----TAGTGTTGTTAAATTTG-CATGATTGTTATTAATAATATAAAATA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -----TAATGTTGTTAGATTCA-CCATGGTTTTATTAATAGTAAAATAAA chr1B_3020 -----TAATGTTGTTACATTCA-CCATGA-TTTATTAATAGTAAAATAAA chr1A_3117 TAAATTAATGGTGTTAGATTCACCATGATTTTTATTAATAATATAATAAA chr1B_3176 -----TTGTGTTGTTAAATTTA-CACGATTGTTATTAATAATATAAAATA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---------------------S---------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TAACA--------------------------------------------- chr1B_1_TraesCS1B01G004000 TAACA--------------------------------------------- chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TAATTG-TTTTCTACCAACGTATTTATGTGAAAATATCTATTTACAAACT chr1B_3020 TAATAG-TTTTCTACCAACGTATTTATGTGAAAATATCTATTTACAAACT chr1A_3117 ATATATTTTTTGTACCAACGTATTTATGTGAAAAGATCTATTCACGAACT chr1B_3176 TAACA--------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -----------------CTGCATCCTTTGGTAAATAGACGACATCCTAGA chr1B_1_TraesCS1B01G004000 -----------------CTGCATCCTTTGGTAAATAGACGACATCCTAGA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TATTGAATACATCATTACTGCATCTATTAAGAATTAGACGTCATCCTAAA chr1B_3020 TATTGAATACATCATTACTGCCCCCTTTAAGAATTAGACGTCATCCTAAA chr1A_3117 TATTGAATACATCATTACTGCCTCCAATAACAATTCGGCGGCAT-CTATA chr1B_3176 -----------------CTGCTTCCTTTGGCAAATAGATGACATCCTAGA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------------------------S------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AAACTTCCTCTGAAACCTCTCTAGCTATATTC---------CAGTGTTGG chr1B_1_TraesCS1B01G004000 AAACTTCCTCTGAAACCTCTCTAGCTATATTC---------CAGTGTTGG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GAACGAGCTAAGAAACCTCAATAGCTAATAATAAAAATTAACAATGTTGG chr1B_3020 GAACGAGCTCAGAAACCTCAATAGCTAATAATAAAAATTAACAATGTTGG chr1A_3117 GAACGAGCTAGGGAACCTCAATAGCTAATAATAA-AATTAACAATGGCGG chr1B_3176 AAACTTGCTCTGAAACCTCTGTAGCTATCAATTCT-------AGTGTTGG chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------S-------------S-------SSSS------------------ forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTTCACGATTCATTTGAACCTATGTGTTTTTCATGGAGAGATATTTGAAA chr1B_1_TraesCS1B01G004000 TTTCACGATTCATTTGAACCTATGTGTTTTTCATGGAGAGATATTTGAAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 ATACACGACTAAGTTGAACCTATATGTTTGTCATGGTGAGACATTTGAAA chr1B_3020 ATACACGACTAATTTGAACATATCTGTTTATCGTGTTGAGACATTTGAAA chr1A_3117 CTTCATGAC------GAACCTATCTATTTTTTATGGCGAGATGTTTGAAA chr1B_3176 TTTCACGATTCATTTGAACCTATGAGTTTTTCACG--GAGATATTTGAAA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------------------------------S------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CAATCAAATGTTGAACATATTTATGTTTCAAGCTTTTTGAAGACTCCAAC chr1B_1_TraesCS1B01G004000 CAATCAAATGTTGAACATATTTATGTTTCAAGCTTTTTGAAGACTCCAAC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 CAATATAATGTTAATG-TATTTATGTTTTGAGCATTTTTAAGATG-TCCT chr1B_3020 CAATATAATGTTAATG-TATTTATGTTTTGAGCATTTTTAAGATG-TCCT chr1A_3117 TAATATAATGTTAATG-TATTTATGTTTCGAGCATTTTTGAGACGCTCCT chr1B_3176 CTATAAAATGTTGAACATATTTATGTTTCAAGATTTTTGAAGACTCCAAC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----S--------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTTGCTCCTACC---A-TAACATATTTAGTGCACTGGGCGAATCTGTGGA chr1B_1_TraesCS1B01G004000 TTTGCTCCTACC---A-TAACATATTTAGTGCACTGGGCGAATCTGTGGA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 ACTTTCCTCTTTGTGA-CA--ATATCTAGTTCACCAAGTGAATTTGTTTA chr1B_3020 ACTTTCCTCTTTGTGA-CAACGTATCTAGTTCACCAAGTAAATTTGTTTA chr1A_3117 ACTTGCCTCTCTTATGGCAATGTATATAGTTCACCACGTGATTTTTTTTA chr1B_3176 TTTGCTCCTACC---A-TAACATATTTAGTGCACTGGTTAAATCTGTGTA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --------------------------------------S---------S- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ACAGATATGCACCCATGCCTCTACAACCGTCGGACGGAGAAGTGATGGCA chr1B_1_TraesCS1B01G004000 ACAGATATGCACCCATGCCTCTACAACCGTCGGACGGAGAAGTGATGGCA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TCAGATGCACAC--ATACATTAGCAACCATTGGATGATGAAGTGATGGAC chr1B_3020 TCGGATGCACAC--ATACATCAGCAACCATTGGATGATGAAGTGATGGAC chr1A_3117 TTGGATATGCAC--ATACATCTGCAACCATTGGATGATGAAGTGATGGAC chr1B_3176 ACGGATATGCACCCATGCCTCTACAACCGTCGGACGGAGAAGTGATGGCC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------S forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AAGATCTATTGACCGCTAACATATTTACATAATAAACCTTGTATTGCATT chr1B_1_TraesCS1B01G004000 AAGATCTATTGACCGCTAACATATTTACATAATAAACCTTGTATTGCATT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 ATGATCAATTGACAACTGACATATTTTTTT-AAAAAGCTTGTATTTAATT chr1B_3020 ATGATCAATTGACAACTCACATATTTAT--CAAAAAACTTGTATTTAATA chr1A_3117 ATGATCCATTGACAGCTGACATATTTAC--AAAAAATCTTGTATTTAATT chr1B_3176 AAGATCTATTTACCGCTCACATATTTAAAGAATAAACCTTGTATTTCATT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -----------------S---------------------------S---- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AAAATCAACCCCACCCTTCAGCTTGTTGGGCTTTTACCATGGAACCAAAT chr1B_1_TraesCS1B01G004000 AAAATCAACCCCACCCTTCAGCTTGTTGGGCTTTTACCATGGAACCAAAT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 AAAATCAACTTG-CACCACAGTTTGTGGCAATTTTTCTA---AACTACGG chr1B_3020 AAAATCAACTTG-CACCACAGTTTGTGGCGATTTTTCTA---AACTACGG chr1A_3117 AAAATCAACCTG-CACCTCTGTTTGTGGTGATTTTTCTA---AACTACGG chr1B_3176 AAAATCAACCACACACTTCAGCTTGTTGGGATTTTGCTATGGAACCAAGT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----------S---S---------------S----S-S----------S- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 --------------CCTTCAGCTTGTTGGGCTTT---------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTTGGATACCAAAACAAAGTTTCATGA----------------------- chr1B_1_TraesCS1B01G004000 TTTGGATACCAAAACAAAGTTTCATGA----------------------- chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TTGATATA-TAAAACTAAGATTCATCAAATTTAACTTGTTTTTTTTTCGT chr1B_3020 TTGATATA-TAAAACTAAGATTCATCAAATTTAACTAGTTTTGTTTTCGT chr1A_3117 TTCATATA-TAAAACCAAGATTTATCAAGTTCAACTTGTTTCTTTTTTGT chr1B_3176 TTAGGATA-CAAAACAAAGTTTCATGG----------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --S-----S----------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ----------------AAATTCTGGATATGAAAC---------------- chr1B_1_TraesCS1B01G004000 ----------------AAATTCTGGATATGAAAC---------------- chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GA---TCAGTTTCATCATGTTTTGGATATGAAACTTGATGGTGAAACTCA chr1B_3020 GAAATTCAGTTTCATCGAGTTTTGGATACGAAACTTGATGGTGAAACTCA chr1A_3117 GAAATTCAGTTTCATCAAGTGTTGGATATGAAACTTAATGTTGAAACTCA chr1B_3176 ----------------AAATTTTGGATATGAAAC---------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---------------------S---------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 --TAAGTTTCATAAAGTTCAACATGAGA----TAAACCACCGGGTTGTTT chr1B_1_TraesCS1B01G004000 --TAAGTTTCATAAAGTTCAACATGAGA----TAAACCACCGGGTTGTTT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TTTAAGTTTTATTAAATTTTAGATGAGATAAAATC----TCGGGTTAATT chr1B_3020 TTTAAGTTTTATTAAATTTTAGACGAGATAAAATCTT----GGGTTAATT chr1A_3117 TTTAAGTTTTATCAAATTATAGATGAGATAAC-TC----CCGGGTTGATT chr1B_3176 --TAAGTTTCATAAAGTTCTAGATGAGATAATTAAACCGCCGGGTTGTTT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------S-S----------------S----------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTCCGAAATGAGATCGACTGCAGGTTGATATTGGTAAAAACATAACC-TT chr1B_1_TraesCS1B01G004000 TTCCGAAATGAGATCGACTGCAGGTTGATATTGGTAAAAACATAACC-TT chr2A_139 ----------------------------TATCAATAATAACATGACA-TA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TTCTTAAATGGACTAT-----GGGTGA----------GAATTAAACGATT chr1B_3020 TTCTTAAATGGACTAT-----GGGTGAATATTTATAAGAATTAAACGATT chr1A_3117 TTCTGAAATGAACTAT-----GGGTGAATATTTATAATAAATAAACGATT chr1B_3176 TTCCGAAATGAGATCGGCCGGGGGTGGATATTGATAAAAACATAACG-TT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----------------S-S-SS---S-------S------------S--- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -TCCGAAATGAGATCGACTGCA---------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GCTTTCC-AAGAATAGTAGCAGCCAAAGACCAAAAGAGCTAGAGTGTTGG chr1B_1_TraesCS1B01G004000 GCTTTCC-AAGAATAGTAGCAGCCAAAGACCAAAAGAGCTAGAGTGTTGG chr2A_139 CTTTTCC-ACCTATAGTGCAGCGCGTGTGGAACAAGCTCCGTCT------ chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 ATTTTGC-AACAATAGTAGAAACCAGGAACCCGAAGGGCTAAAGTGCAGG chr1B_3020 ATTGTGC-AACAATAGCAGAAACCAGGAACCCAAAGGGTTAAAGTGCAGG chr1A_3117 GTTTTTATAACAATAACAGCAACCAAGAACATAAAGAGCTAAAGTGTGTG chr1B_3176 GTTTTCC-AAAACTAGTAGCAGCCAAAGACCAAAAGGTCTAGAGTGTGGG chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -S--------S------------------------------------S-- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTGATTTCAATAAAATACAGGGTTGTTTTGGAAAATATTCTACAGCCCAA chr1B_1_TraesCS1B01G004000 TTGATTTCAATAAAATACAGGGTTGTTTTGGAAAATATTCTACAGCCCAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TAGATTTTCGTACAATACAAGGCTATTGCTACAAATATGATATATCCCAA chr1B_3020 TATATTTTCGTACAATACAATGTTATTCCTACAAATATGATATATCCCAA chr1A_3117 CAGATTTTCATACCATACAAAGTTATTCCTGCAAATATGCTATATCGCAA chr1B_3176 TTGATTTCAATAAATTACAGGGTTGTTTCGGCAAATATGCTACGGCCCAA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----------------------------S--S------S----------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CTAGTTCCCAAATATTGCACACCGCCTTTTCATCCAATGTCCCAAAAAAC chr1B_1_TraesCS1B01G004000 CTAGTTCCCAAATATTGCACACCGCCTTTTCATCCAATGTCCCAAAAAAC chr2A_139 --------------TTGCCAATCTTCGTCTTT------------------ chr7B_341 ----------AATATTGCACATCTAAGTCTTA------------------ chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 CTTATTCATGAATCTTGCGGGACACTTTCCCATCCAATGGCCCAAAAC-- chr1B_3020 CCTATTCATGAATCTTGCGGTACATTTTCCCATCCAATGGCCCAAAAC-- chr1A_3117 CTTATGCATGAATCTTGCGGGACACTTTTCCATCCAATGGCCCAAAAC-- chr1B_3176 CTTGTGCCCAAATATTGCACACCGCTTTTTTATGCAATCGTCCAAAAAAC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --S------------------------------------S---------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ACAGGTGCATCCGGTGCATAAATTCGGCTGGTGCACTTGATGCGTTCTGT chr1B_1_TraesCS1B01G004000 ACAGGTGCATCCGGTGCATAAATTCGGCTGGTGCACTTGATGCGTTCTGT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -CACATACCTTCGGTGCATAGATATGGCCGGAGTCGGTGATAGATTATCA chr1B_3020 -GACATACCTTCGGTGCATATATATGGCTGGAGTCGGTGATAGATTATCA chr1A_3117 -CTCTTGCCCTCGGTGCATAGATTTGGCCGGTGCCAATGATATATTATCT chr1B_3176 ACAGGTGCATCCGGTGCATAAATTCGGCCCTTGCACTTGATGAGTTCTCT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------------------------------------S-----S- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ACCTCCTATAAGCTAAGAGAAA-TATTTAATTTGAGCCGTTCATTGATTA chr1B_1_TraesCS1B01G004000 ACCTCCTATAAGCTAAGAGAAA-TATTTAATTTGAGCCGTTCATTGATTA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 ACCTCCTATGAGTT---------TTTTTTATTTGGGCCGTCTATTGATCA chr1B_3020 ACCTCATATGAGTT---------TTTTTTATTTGGGTCATCTATTGATCA chr1A_3117 ACCTCGTATGAGGTAAAAATAACTATTTGATTTGGGCCGTCTATTGATCA chr1B_3176 ACCTCCTATAAGGTAAGAGAAA-CATTTAATTTGAGCCGTTCATTGATCA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------S-----------------------------------S- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AGAGTACATTTGACAACTTAAACATTTTTTTT-GCAC------------- chr1B_1_TraesCS1B01G004000 AGAGTACATTTGACAACTTAAACATTTTTTTT-GCAC------------- chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TGGGTATATTAAGATATTTTGACAATGTATCACAATTGCCACTCTTAAAT chr1B_3020 TGTGTATATTT-ACAACATAAATATTC----------------------- chr1A_3117 TGGGTATATTT-ACAACATAAACATTC----------------------- chr1B_3176 AGGGTACATTTGACAACGTAAACACTTTTTTTAGCAC------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --S----------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TATTGATTTTGCCACAGAATGGCAATTGTGATGTATTATCAAAAACTAAG chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 AGTGGCAAAAGTGAAATGTCAAATTCTAGAGTGGCATAAGCAAAGTGGTC chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 --------------------------------------------AAGTAC chr1B_1_TraesCS1B01G004000 --------------------------------------------AAGTAC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 AAAACCTAGAGTGGCAAAAACAAAGTTTTCCCTATTTACAACATAAATAT chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 --------------------------------------------AAGTAC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTGTAAAATAGGAATGTATCAAAAATGATTCTTTTTCTTGGTTTCTCTCT chr1B_1_TraesCS1B01G004000 TTGTAAAATAGGAATGTATCAAAAATGATTCTTTTTCTTGGTTTCTCTCT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TCTGTAGATAGAAATGTTTCACGAAAGTTCTTTT---------------- chr1B_3020 -TGTAAGATAGAAATGTTTCATGAAAGTTCTTTT---------------- chr1A_3117 -TATAAGATTGAAATGTTTCATGAAAGTTCTTTT---------------- chr1B_3176 TTGTAAAATAGGAATGTTTCAAAAAAGATTTTGTTTCTTGGTTTCTCTCT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -----------------S-------S----S------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTTCCGTACCACACATTCACAAGATGGCTCCCATATGTTCTGTACATACC chr1B_1_TraesCS1B01G004000 TTTCCGTACCACACATTCACAAGATGGCTCCCATATGTTCTGTACATACC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 TTTCCATACCACACATTCACAAGATGGCTCACATTTGTTCTGTACATACC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -----S------------------------S---S--------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTAAATAATAGGACAGATTTTATTTTCATTTGTTCATGCACAATAATTTA chr1B_1_TraesCS1B01G004000 TTAAATAATAGGACAGATTTTATTTTCATTTGTTCATGCACAATAATTTA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 TTAAAAAATAGGACAGATTTTATTTTCATTTTTTCATGCACAATAATTTA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -----S-------------------------S------------------ forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TATTTATGTGGTTAATTTGAAGTTGCACCTCAGAGCACAGGCTTTCTAGA chr1B_1_TraesCS1B01G004000 TATTTATGTGGTTAATTTGAAGTTGCACCTCAGAGCACAGGCTTTCTAGA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 TATTTATGTGGTTAATTTGAAGTTGCACCTCGGAGCACAGGCTTTCTGGT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------S---------------S-S forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GAAATGAAACAACTTTTCAAATAAATAAAATAATTCATGTGTTTTGTGAG chr1B_1_TraesCS1B01G004000 GAAATGAAACAACTTTTCAAATAAATAAAATAATTCATGTGTTTTGTGAG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 GAAATGAAACAACTTTTCAAATGAAAATAATAATTCTTGTCTTTCGTGAG chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----------------------S--S-S--------S---S---S----- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CCTGTAAATTTTCATGGAAGAAAAATAAATGTTGCACCTTGTGTACAAAA chr1B_1_TraesCS1B01G004000 CCTGTAAATTTTCATGGAAGAAAAATAAATGTTGCACCTTGTGTACAAAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 CCTATAAATTTTCATGGAAGAAAAATAAATGTTGCACCTTGTGTACAAAA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---S---------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AACAGTTTTAGGGCTTAACTTTTTTGTTTGTTTTAAGCATTG-TTTTTTT chr1B_1_TraesCS1B01G004000 AACAGTTTTAGGGCTTAACTTTTTTGTTTGTTTTAAGCATTG-TTTTTTT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 ------------------------------TTTTAAACATAT-TTTTTTT chr1B_3020 ------------------------------TTTTAAACATAG-TTTTTTT chr1A_3117 ------------------------------TTTACAACATAGATTTTTTT chr1B_3176 AACAGTTTTAGGGCTTAACTA-TTTTTTTGTTTTAGGCATTT-TTCTTTT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --------------------SS---S------------------------ forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TCTTTTAGGTGCAAAATAGTTTGAATTTTCATGAATGTTTCGCAATCACA chr1B_1_TraesCS1B01G004000 TCTTTTAGGTGCAAAATAGTTTGAATTTTCATGAATGTTTCGCAATCACA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TCTTTTCAGTTCAAAATAGTTCATATTGTCGTGAAAGTTTGCACC-CACG chr1B_3020 TCTTGTCAGTTCAAAATAGTTCATATTGTCGTGAAAGTTTGTACC-CACG chr1A_3117 TCTTTTCGGTTCAAAATAGTTCATATTTTCATGAAAGTTTGCACC-CATG chr1B_3176 TCTTTTAGGTGCAAAATAGTTTGAATTTTCATGAAAGTTTCCCAATCACA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -----------------------------------S-----S-------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -----------------------------------------GCAATCACA forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CAACGAGCACAAATTTGTACATATGT-AAAAAAGATTCTTTTTTGAACTG chr1B_1_TraesCS1B01G004000 CAACGAGCACAAATTTGTACATATGT-AAAAAAGATTCTTTTTTGAACTG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 AAATGAGCACAAATTTGTATCTATGT-AAAACGTATTTGTTTTTGGACTC chr1B_3020 AAATGAGCACAAATTTGTATCTATGT-AAAACGTATTCGTTTTTGGACTC chr1A_3117 AAATGAGTGCAAATTTGTATCTATGT-AAAACTTATTCGTTTTTGGACTC chr1B_3176 CAACGAGCGCAAATTTGTACATATGTCAAAAAAGATTCTTTTTTGAACTG chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 CAACGAGCACA--------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TCTATTCGTCCAGATGCATGTTCTTGGGAGC-CATTTGGCTGCACCCATA chr1B_1_TraesCS1B01G004000 TCTATTCGTCCAGATGCATGTTCTTGGGAGC-CATTTGGCTGCACCCATA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------TTGGGAACATTTGGTTGCACCCATA chr1B_3020 -------------------------TTGGGAACATTTGGTTGCACCCATA chr1A_3117 TCGGTTATTCCTGAAGCATGTGCTTTTGAGAACATTTGGTTGGACACATA chr1B_3176 TCTCTTCGTCCAGAAGCATGTTCTTGGGAGC-CATTTGGCTGCACCCATA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ---S----------S----------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 --------------TGCATGTTCTTGGGAGCCAT---------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTTTACATACATAT--CATGTAAGCATTTAAAATTATATTATATATTTAA chr1B_1_TraesCS1B01G004000 TTTTACATACATAT--CATGTAAGCATTTAAAATTATATTATATATTTAA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TTTTACATACTAATGCCATGCAAGCATTCTAAATTAAATTATAAATTTAT chr1B_3020 TTTTACATACTAATGCCATGCAAGCATTCT-AAATAAATTATAAATTTAT chr1A_3117 TTTTAAATACTAAAGCCATGCAGGTGCTCAAAATTAAATTATATATCTAT chr1B_3176 TTTTACATACATAT--CATGTAAGAATTTAAAATTAAACTATATATTTAT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------------------------------S------------S forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ATTGTGCGGAAAAATATACCGTATCATATGTACGCGCATTACAAATGACA chr1B_1_TraesCS1B01G004000 ATTGTGCGGAAAAATATACCGTATCATATGTACGCGCATTACAAATGACA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GTTCCATAGACAAATAT-------------------------------CA chr1B_3020 GGTCCATAGACAAAGAT-------------------------------CA chr1A_3117 GTTCCGTAGACAAATAT-------------------------------CA chr1B_3176 ATTGTGCGGAAAAATATACCGTATCATATGTATGCGCATTACAAATGACA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs --------------------------------S----------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CTGTATTGTTGGTCTAAATT------------------------------ chr1B_1_TraesCS1B01G004000 CTGTATTGTTGGTCTAAATT------------------------------ chr2A_139 -------------------T------------------------------ chr7B_341 -------------------T------------------------------ chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 CTATATTATTCATCCAAAGT------------------------------ chr1B_3020 CTATATTATTCATCCAAAGG------------------------------ chr1A_3117 CTATACTATTAATCCAAAGT------------------------------ chr1B_3176 CTGTATTGTTCATCTAAATTAATGGGTGGAGGCACATTAATCCCGGTTCT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ----------SS-------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 TGTTTGAACCGGGACTAATGGGTGGAGGTATTAGTAACGACCCATTAGTC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 CCGGTTCATGAACCGGGACTAAAGGCCCTCACGAACCGGGACTATTATGT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ------------------GCTAACATAATAATTCATGTAATTGTCAGCGG chr1B_1_TraesCS1B01G004000 ------------------GCTAACATAATAATTCATGTAATTGTCAGCGG chr2A_139 ------------------GGGGGTATCATCAAAGCTCGCTCCATTACTAA chr7B_341 ------------------GCCAACGTTAAGATTCGTGCAATCTT------ chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 ------------------GCTAAT-------TCCATGTTATTATCAGCAG chr1B_3020 ------------------GCTAAT-------TCCATGTTATTATCAGCAG chr1A_3117 ------------------GCTAAT-------TCCATGTTATTATCTGCAG chr1B_3176 GTTTTTTTACTAGTGATTGCTAACATAATAATTCGTGTAATTATCAGCGG chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs ------------------------------------------S------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CTTAATCCGGGCATGTTGAAGAATGACATCATGCATGCTATTTGGTTGAG chr1B_1_TraesCS1B01G004000 CTTAATCCGGGCATGTTGAAGAATGACATCATGCATGCTATTTGGTTGAG chr2A_139 CATGTCCCCTGT-------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TTTAATCCGGAAATATT---GAATGAGACCATGGGTGCTCTTTGGTTGAG chr1B_3020 TTTAATCCGGAAGTATT---GAATGACACCATGGGTGCTCTTTGGTTGAG chr1A_3117 TTTAATCCGGAAATATT---GAATGCCACTATGGGTGCTCTCTGGTTGAG chr1B_3176 CTTAATCCGGGCATGTTGAAGAATGACATCATGCATGCTATTTGGTTGAG chr1B_5285 --------------------GAATGACACCATGGATGCTCTTTGGTGGAG chr1B_5285 --------------------GAATGACACCATGGATGCTCTCTGGTGGAG chr1B_5285 --------------------GAATGACACCATGGGTTCTCTTTTCTGGAG chr1B_5285 --------------------GAATGACACCATGGATGCTCTCTGGTGGAG chr1B_5285 --------------------GAATGACACCATGGATGCTCTCTGGTGGAG chr1B_5285 --------------------GAATAACACCGTGAATGCTCTTTGGTGGAG chr3B_5285 --------------------GAATGACACCATGTATGCTCTTTGGTGGAG chr7D_5285 --------------------GAATGACACCATGGGAGCTCTTAGGTGGAG chr6B_5301 ------------------------------------GCTCTTTGGTGGAG chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CTATCAACAGCTTAATCCAGACATCAAGCGATGCGTCAAATACTGCAGTA chr1B_1_TraesCS1B01G004000 CTATCAACAGCTTAATCCAGACATCAAGCGATGCGTCAAATACTGCAGTA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GTATCAACAACTTAATCCAGATCTCCAGCGAAGCTTCAAATATTGCAGTA chr1B_3020 GTATCAACAACTTAATCCAGATCTCCAGCGAAGCTTCAAATATTGCAGTA chr1A_3117 GTATCAACAACTTAATCCAGATCTCCAGCGAAGCTTCAAATATTGCAGTA chr1B_3176 CTATCAACAGCTTAATCCAGACATCAAGCGATGCGTCAAATACTGTAATG chr1B_5285 CTATCAGCCGCTTAATCCGGACATAAGGCGTTGCTTTCAATTCTGCAATA chr1B_5285 CTATAAGCAGCTTAATCCAGACATCAGGCGATGCTTTGAATTCTGCAATG chr1B_5285 TTATCAGCAGCTTAATCCGGACATCAAGCGATGCTTAGAGTACTGCCATA chr1B_5285 CTATAAGCAGCTTAATCCAGACATAATGCGATGCTTTGAATTCTGCAATA chr1B_5285 CTATAAGCAGCTTAATCCAGACATAATGCGATGCTTTGAATTCTGCAATA chr1B_5285 CTATCAGCTTCTTAATCCGGACATCAGGCGATGCTTAGAAATGTCCAATA chr3B_5285 CTATCAACGGCTTGATCCGGACATCAGGCGCTGCTTTGAATTCTGCAATA chr7D_5285 CTATATGCAACTTGATATGGACATCAGGCGATGCTTTGAATACTGCAATA chr6B_5301 CTATCAGCTGCTTAATCCAGACATCAGGCGATGCTTTGAATTCTGCAATA chr4B_5325 ----------CTTGATCCAGACATCAAGCGATGCTTTGAATATTGCAGTA chr4D_5325 ----------CTTGATCCAGACATCAAGCGATGCTTTGAATATTGCAGTA chr1B_5350 -----------------------------------TCAAATATTGCAGTA chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTTTTCCCAAAAGGTCCAAGTTAAATAAGGACGAGTTAGTTCACCTGTGG chr1B_1_TraesCS1B01G004000 TTTTTCCCAAAAGGTCCAAGTTAAATAAGGACGAGTTAGTTCACCTGTGG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TTTTCCCCAAGAGATCCAAGTTAAGAAGGGATGTGTTAGTTCGCTTGTGG chr1B_3020 TTTTCCCCAAGAGATCCAAGTTAAGAAGGGATGTGTTAGTTCGCTTGTGG chr1A_3117 TTTTCCCCAAGAGATCCAAGTTAAGAAGGGATGTGTTAGTTCGCTTGTGT chr1B_3176 TTTTTCCCAAAAGATCCAAGTTAAATAAGGATGAGTTAGTTCACCTGTGG chr1B_5285 TTTTTCCCCGAAGAACGAAGTTGAGAAAGGATGAGTTAGTTCATCTGTGG chr1B_5285 TTTTCCCCAGAAGATTGAAGTTGAGAAAGGATGAGTTAGTTCACCTGTGG chr1B_5285 TTTTCCCCAGAAGATCGATGTTGACAAGGGCCGAGTTAATTCATCTTTGG chr1B_5285 TTTTCCCCAGAAGATTCAAATTGGATAAACACGACTTAGTTGGCTTGTGG chr1B_5285 TTTTCCCCAGAAGATTCAAATTGGATAAACACGACTTAGTTGGCTTGTGG chr1B_5285 TTTTCTCCCGAAGAGCCAAGTTGCAAAGGGTCAAGTTAGTTCACATGTGG chr3B_5285 TTTTTCCTCGAAGATCCAAGCTGAGAAGGGGCGAATTAGTTCGCCTGTGG chr7D_5285 TTTTCCCTAGAAGATTCAAACTTGAAAAGGACAAATTAGTTCACCTGTGG chr6B_5301 TTTTCCCTCGAAGATCTGGGTTCAGCAGGCAAGAGTTAGTTCGTCTGTGG chr4B_5325 TTTTTCCCAGAGGATCCAAGTTGAGAATGGTCGAGTTAGTTCACCTGTGG chr4D_5325 TTTTCCCCAGAGGATCAAAGTTGAGAATGGTCGAGTTAGTTCACCTGTGG chr1B_5350 TTTTCCCCAAGAGATCCAAGTTAAGAAGGGATGTGTTAGTTCGCTTGTGG chrUn_5387 ------------------------------ATGAGTTAGTTCACCTGTGG SNPs -------------S------------------------------------ forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ATAGCGCAAGGGTTTATAAAGACTAATTGTGCAACAGAGGACATGGAAGA chr1B_1_TraesCS1B01G004000 ATAGCGCAAGGGTTTATAAAGACTAATTGTGCAACAGAGGACATGGAAGA chr2A_139 -------------------------------------------------- chr7B_341 ------------TTTCTAAATGATTGTTGTAATA------TTAAGGTAAA chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GTAGCACAAGGGTTTATAAAGACCAGTTGTGCAACGGAGGACATGGAAGA chr1B_3020 GTAGCACAAGGGTTTATAAAGACCAGTTGTGCAACGGAGGACATGGAAGA chr1A_3117 ATAGCACAAGGGTTTATAAAGACCA---GTGCAACAGAGGACATGGAAGA chr1B_3176 ATAGCGCAAGGGTTTATAAAGACTAATTGTGCAACAGAGGACATGGAAGA chr1B_5285 ATAGCGCAAGGGTTTGTAAAGAGCAGGTGTGCAACAGAGGACATGGAAGA chr1B_5285 ATAGCACAAGGGTTTGTAAAGAGCAGTTGTGCAACAGAGGAGATGGAAGA chr1B_5285 ATTGCACAAGGGTTTTTAAAGACCAGCTGTGCAACAGAGGACATGGAAGA chr1B_5285 ATAGCGCAAGGACTTGTAAAGACTAGTTGTCCAACAGAAGACATGGAAGA chr1B_5285 ATAGCGCAAGGATTTGTAAAGACTAGTTGTCCAACAGAAGACATGGAAGA chr1B_5285 ATAGCACAAGGCTTCATAAGGACCAGCTGTGAAACAGAGGACATGGAAGA chr3B_5285 ATAGCACAGGGGTTTGTAAAGACCAGTTCTGCAA------ACATGGAAGC chr7D_5285 ATAGCGCAAGGGTTTGTGAAGACCGGTCGTGAAACAACGAATATGGAAGA chr6B_5301 ATAGCAGGAGGGTTTGTAAAGACATCTTGTTCAGAAAAGGACATGGAAGA chr4B_5325 ATAGCGCAAGGGTTTGTCAAGATCAGTTGTGCAACAGAAGACATGGAAGA chr4D_5325 ATAGCGCAAGGGTTTATCAAGATCAGTTGTGCAACAGAAGACATGGAAGA chr1B_5350 GTAGCACAAGGGTTTATAAAGACCAGTTGTGCAACGGAGGACATGGAAGA chrUn_5387 ATAACGCAAGGGTTTATAAAGACTAATTGTGCAACAGAGGACATGGAAGA SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TGTAGCTGAGGGCTATGTTCAAGAGTTAGTG--CCATGCTCATTTCTGCA chr1B_1_TraesCS1B01G004000 TGTAGCTGAGGGCTATGTTCAAGAGTTAGTG--CCATGCTCATTTCTGCA chr2A_139 -------------------------------------------------- chr7B_341 TATAGCTTACCACTCATGTCAAGTGGTATCAAATGATCATCTTATGTCTC chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TATAGCTGAGAGTTATTTTCAGGAGTTAGTG--TCATGCTCATTTCTTCA chr1B_3020 TATAGCTGAGAGTTATTTTCAGGAGTTAGTG--TCATGCTCATTTCTTCA chr1A_3117 TGTAGCTGAGAGTTATTTTCAAGAGT--GTG--TCATGCTCATTTCTGCA chr1B_3176 TGTAGCTGAGGGCTATGTTCAAGAGTTAGTG--TCATGCTCATTTGTACA chr1B_5285 CGTAGCTGAGGGCTACATTCAAGAGTTATTG--TCATGCTCATTTCTTCA chr1B_5285 TGTAGCTGAGGGCTACATTCAAGAGTTAGTA--TCATGCTCATTTCTGCA chr1B_5285 TGTAGCTGAGGGCTATGTTCAAGAGTTAGTG--TCGTGCTCATTTCTGCA chr1B_5285 TGTAGCTGAGGGCTACATTCAAGAGTTGGTT--TCATGCTCATTTCTGCG chr1B_5285 TGTAGCTGAGGGCTACATTCAAGAGTTGGTT--TCATGCTCATTTCTGCG chr1B_5285 TGTAGCCGAGTGCTACATTCAAGAGTTAGTG--TCATGCTCATTTCTGCA chr3B_5285 TGTAGCTGAGTGCTACCTTCAAGAGTTGGTG--TCATACTCATTTCTGCA chr7D_5285 TGTAGCTGAAAGGTACATTCATGAGTTACAG--TCATGCTCATTTCTGCA chr6B_5301 TGTAGCCGAGGACTACATTCAAGAGTTACTT--TCATGCTCATTTCTGCA chr4B_5325 AGTAGCTGAGGGCTACTTTCAAGAGTTAGTG--TCGCGCTCATTTCTGCA chr4D_5325 AGTAGCCGAGGGCTACTTTCAAGAGTTAGTG--TCGCGCTCATTTCTGCA chr1B_5350 TATAGCTGAGAGTTATTTTCAGGAGTTAATG--TCATGCTCATTTCTTCA chrUn_5387 TGTAGCTGAGGGCTATGTTCAAGAGTTAGTG--TCATGCTCATTTCTGCA SNPs ---------------------------------S---------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ACCAGAAGA---------AGATGATTACTCTATCA------------A-- chr1B_1_TraesCS1B01G004000 ACCAGAAGA---------AGATGATTACTCTATCA------------A-- chr2A_139 -------------------------------------------------- chr7B_341 ACAGGGAGG---------AAATTCCTACTGTATA---------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GCAAGGAGG---------A---------------------------GAAT chr1B_3020 GCAAGGAGG---------A---------------------------GAAT chr1A_3117 ACAAGGAGG---------AGAATGGT------------------------ chr1B_3176 ACCAGAAGA---------AGATGATTACTCTATCA------------A-- chr1B_5285 AGCAGAAGT---------AGATGATTACTCTGAAGTA---------GA-- chr1B_5285 ACCAGAAGG---------A---------------------------GA-- chr1B_5285 GCTAGAAAAAGGCTCGATTGATGATTTTCTAAAGACCGACCAA------- chr1B_5285 ACCAGATGATTACTCTGAA---------------------------GA-- chr1B_5285 ACCAGATGATTACTCTGAA---------------------------GA-- chr1B_5285 ACCGGAAGG---------AACTTGTTCAGTTTCTGCCACTGCCACTGA-- chr3B_5285 ACCAGAAGG---------AACTAGTTCTGAATCTT---CTGATACGGA-- chr7D_5285 ACCAGAAGA---------AACT------------------------GG-- chr6B_5301 ACCAGTAGT---------AGATGGTTCCTTCGGATGTG------------ chr4B_5325 ACCAGAAGA---------AAGTAGTTA------------TGATACCGG-- chr4D_5325 ACCAGAAGA---------AAGTAGTTA------------TGATACCGG-- chr1B_5350 GCAAGGAGG---------A---------------------------GAAT chrUn_5387 ACCAGAAGA---------AGATGATTACTCTATCA------------A-- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ----------ATACATTACAATCCTTGATCTGCTGCATGATTTATTAGAC chr1B_1_TraesCS1B01G004000 ----------ATACATTACAATCCTTGATCTGCTGCATGATTTATTAGAC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GGCCTGA---TTGGTTTACAATTCCTGACTTGTTGCATGATTTATTAGAC chr1B_3020 GGCATGATACTTGGTTTACAATTCCTGACCTGTTGCATGATTTATTAGAC chr1A_3117 ---ATGATACTTGGTTTACAATTCCTGACCTGTTGCATAATTTATTAGAC chr1B_3176 ----------ATACATTACAATCCTTGATCTGCTGCATGATTTATTAGAC chr1B_5285 ----------ATACTTCACAATTCATGATCTGCTGCATGATTTATTAGCC chr1B_5285 ----------TTACTTTGCAATCCATGATCTGCTGCATGATTTAGCAGAA chr1B_5285 --------------TTCAGAATTCATGATCTGATGCATGATTTATTGGAC chr1B_5285 ----------ATGCTTTGCAATTCATGATCTGCTGCATGATTTATTAGCC chr1B_5285 ----------ATGCTTTGCAATTCATGATCTGCTGCATGATTTATTAGCC chr1B_5285 ----------GTGCTTTAGAATTCATGATCTGCTGCATGACATTATAGAA chr3B_5285 ----------TTGCTTTACAATTCATGGTCTGCTGTATGATTTATTAGAC chr7D_5285 ----------GTACTTTTCAATTCATGACCTGGTGCATGAATTAGCACAG chr6B_5301 ------------ACTTTACAATTCATGATCTGCTGCATGATTTATTAGAC chr4B_5325 ----------TTGCTTCACAATTCATGATGCCCTGCTTGATTTATTCGAC chr4D_5325 ----------TTGCTTCACAATTCATGATGCCCTGCTTGATTTATTCGAC chr1B_5350 GGCATGATACTTGGTTTACAATTCCTGACCTGTTGCATGATTTATTAGAC chrUn_5387 ----------ATACATTACAATTCTTGATCTGCTGCATGATTTATTAGAC SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 ----------------------------------------------AGAC reverse_11208 -------------------------------------------------- input_sequence_4600 AAGATCGTTGGAAGGGGTTACTTCAGAATCGAGAATGCAAGGAGTCAGAG chr1B_1_TraesCS1B01G004000 AAGATCGTTGGAAGGGGTTACTTCAGAATCGAGAATGCAAGGAGTCAGAG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 AAGATTAGTGGAACGGAATGCTTCAGAATCGAGAATGCAAGGAGTCAGAG chr1B_3020 AAGATTAGTGGAACGGACTGCTTCAGAATCGAGAATGCAAGGAGTCAGAG chr1A_3117 AAGATGAGTGGAACGGACTGCTTCAGAATAGAGAATGCAAAGAGTCAAAG chr1B_3176 GAGATCGTTGAAAGGGATTACTTCAGAATCGAGAATGCAAGGAATCAGAG chr1B_5285 AAGGTTGCTGGAAGTGATTGCTTCAGAATTGAGAATACAAGGAACCACAG chr1B_5285 AAGATCGTCGGAAGTGATTTCTTCAGAATCGAGAATGAAAGGAGCCAGAG chr1B_5285 AAAATCACTGGAAGGGACTACTTCATAATCGAGAATGCAGAGAGTGATAC chr1B_5285 AAGGTTGCTGGAAGTGATTGCTTCAGAATTGAGAACACATGGAGCCACAT chr1B_5285 AAGGTTGCTGGAAGTGATTGCTTCAGGATTGAGAACATATGGAGCCACAT chr1B_5285 AAGGTAGCAGGAAGGCACTGCTTAATAATTGACAATGAAAGTAGCCTGAG chr3B_5285 AAGGTCTGTGGAAGTGACTACTACAGAATCGAGAATGCAAGGAGCCAGAG chr7D_5285 ACGATAGCCGGAAGTGATTCCTTCAGAATCGAGAATGCAAGTTGGCGGAG chr6B_5301 AAGGTAACTGGAAGTGATTACTTCAGAATCGAGAATGAAACGAGCCAGAG chr4B_5325 AAAGTTTCTGGA---GATTGCTTCAGAATCGAGAATGG------CCATAG chr4D_5325 AAAGTTTCTGGA---GATTGCTTCAGAATCGAGAATGACTT------TAG chr1B_5350 AAGATTAGTGGAACGGACTGCTTCAGAATCGAGAATGCAAGGAGTCAGAG chrUn_5387 AAGATCGTTGGAATGGATTACTTGAGAATCGAGAATGGAAGGAGTCAGAT SNPs ----------------S--------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 AAGATCGTTGGAAGGGG--------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AGGAA---TAGTCTGGAAAGGAGATGTTCCCCGAGATGTTCGCCACCTTT chr1B_1_TraesCS1B01G004000 AGGAA---TAGTCTGGAAAGGAGATGTTCCCCGAGATGTTCGCCACCTTT chr2A_139 -----------------------ATCTCCATCCAGCTCAACCTCATCATT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 AGGAG---AAGGATGGAAAGGAGATGTTCCCCAAGACGTCTGCCATCTTC chr1B_3020 AGGAG---AAGGATGGAAAGGAGATGTTCCCCAAGACGTCTGCCATCTTC chr1A_3117 AGGAG---AAGGGTGGAAAGGAGACGTTCCCCAAGACGTCTGCCATCTTC chr1B_3176 AGGAA---TAGTCTGGAAAGGAGATGTTCCCCGAGATGTCTGCCACCTTT chr1B_5285 AGGAG---AAGGATGGAAGGAAGAAGTCCCTCGAGATGTCCGCCATCTTT chr1B_5285 AGGAG---GAGCCTGGAAAGGGGATGTCCCTGGAGATGTCCGGCATCTTT chr1B_5285 AGGAG---AAGGTTGGAAAGGAGTTGTTCCAAGAGATGTCCGCCATCTTG chr1B_5285 AGGAG---AAGGCTGGAAGGGAGAAGTCCCTCGAGATGTCCGCCATCTTT chr1B_5285 AGGAG---AAGGCTGGAAGGGAGAAGTCCCTCGAGATGTCCGCCATCTTT chr1B_5285 AGGAG---------GGAAAGGATATAACCCTGAAGATGTGCATCATCTTT chr3B_5285 AGGAG---AAAGCTGGAAAGGGGATATCCCTGAAGATGTCCGCCATCTTT chr7D_5285 AGAAG---AAAT---GGAAGTAGATGTCCCTACAGATGCTCGACATCTTT chr6B_5301 AGGAAATAAAAGCTGGAAAGGAGATATCCCTCAGGATGTCCGCCATCTTT chr4B_5325 AGGAG---ATGGCTGGGAAGGAGATATCCGTCAAGATATCCAGCATCTTT chr4D_5325 AGGAG---GTGGCTGGGAAGGAGATATCCGTCGAGATATCCAGCATCTTT chr1B_5350 AGGAG---AAGGATGGAAAGGAGATGTTCCCCAAGACGTCTGCCATCTTC chrUn_5387 AGGGA---AAGTTTGGAAAGGAGATGTTCCCCGAGATGCCCGCCACCTTT SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTGTTCAAAATTATGACGGAGAATTGATTACGAAGAAGATCCTTGCATTG chr1B_1_TraesCS1B01G004000 TTGTTCAAAATTATGACGGAGAATTGATTACGAAGAAGATCCTTGCATTG chr2A_139 ATCATCATAATTATCATATGTAGGTTCACCTTGCTGCTCTGTC------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TTGTAGAGAATTATGATGGAGAATTGATTACTGAAAAGATCCTTGGATTG chr1B_3020 TTGTAGAGCGTTATGATGGAGAATTGATTACCAAAAAGATCCTTGGATTG chr1A_3117 TTGTAGAGCATTATGATGGAGAATTGATTACTAAGAAGATCCTTGGATTA chr1B_3176 TTGTTCAAAATTATGATGGAGAATTGATTACGAAGAAGATCCTTGCATTG chr1B_5285 TTGTTCAGAATTATGATGGAGAATTGATTACTAAGAAGATCCTTGGATTG chr1B_5285 TTGTTCAGAATTATGATGCAGAATTGATTACTGAGAAGATCCTTGGATTG chr1B_5285 TTGTTCAGAATTATGATGGAGAATTGATTATTAAGAAGATCCTTGGATTG chr1B_5285 TTGTTCAGAATTATGATGGGGAATTGATTACCAAGAAGATCCTTGCATTG chr1B_5285 TTGTTCAGAATTATGATGGGGAATTGATTACCAAGAAGATCCTTGCATTG chr1B_5285 TGGTTGAAAATTATGATGCAGAGTTGATTACCAAGATGATCCATGGGATG chr3B_5285 TTGTTGAGAATTGTGATGGAAAAATGAT---TGAGAAGATCCTTGGATTG chr7D_5285 TTGTTCAGAAATACGACGGAGATTTGATTACTAAGAAGATCCTTCAAATG chr6B_5301 TTATTCGGATCTATGGTGGAGAATTGATTACTGATAAGATCCTTGGTTTG chr4B_5325 TAATTCGTTATTATGATGGCAAATTGATTACTGAGAAGATCCTTGGATTG chr4D_5325 TAATTCGTTGTTATGATGGCAAATTGATTACCGAGAAGATCCTTGGGTTG chr1B_5350 TTGTAGAGCGTTATGATGGAGAATTGATTACCAAAAAGATCCTTGGATTG chrUn_5387 TTGTTCAAAATTATGATGGAGAATTGATTACGAAGAAGATCCTTGGATTG SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GAAAATTTACGCACTCTAATTATTTATGTGGTTGAAAAGGATACACCAGT chr1B_1_TraesCS1B01G004000 GAAAATTTACGCACTCTAATTATTTATGTGGTTGAAAAGGATACACCAGT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GAAAATTTACAAACACTCATAATTTATGTTGTTGAAAAGGGTACTACAGT chr1B_3020 GAAAATTTACACACCCTCATAATATATGTTGTTGAAAGGGATACATCAGT chr1A_3117 GAAAATTTACACACTCTCATAATATATGTTGTTGAAAGGGATACATCAGT chr1B_3176 GAAAATTTACGCACTCTAATTATTTATGTGGTTGAAAAGGATACACCAGT chr1B_5285 GAAAATTTACGCACTCTTATCATTGATGCTGTTAATGGGGATACACCAGT chr1B_5285 GAAAATTTACGCACTCTTATCATTGATGCTGTTAATGGGGATACACCAGT chr1B_5285 GAATGTTTACGCACTCTCATTATTTATCGTGTTCAAAGGAGTAGACCAGT chr1B_5285 GAAAATTTACGCACCCTCATCATCTATGTTGTTGGAG---GTACACCAGT chr1B_5285 GAAAATTTACGCACCCTCATCATCTATGTTGTTGGAT---ATACACCAGT chr1B_5285 GGAAATTTACGCACTCTCCTCATTTATGATGATAGAAAGGATATACTAGT chr3B_5285 AAAAAATTACGCACTCTCATTATTTATATTGTTGAATGGGATACACCAGT chr7D_5285 GAAAATTTACGCACACTGATCTTTTATACTGTTGGGCGTG---CGCCGGT chr6B_5301 GAAAATTTGCGCACTCTCATTCTTTATTATGGTGGAAAGGATACAACAGT chr4B_5325 GAAAATTTGCTCACTCTCATTGTTTATAAAGTTGACGCAG---CACCAGT chr4D_5325 GAAAATTTGCTCACTCTCATTGTTTATAAAGGTCACGCAG---CACCAGG chr1B_5350 GAAAATTTACACACCCTCATAATATATGTTGTTGAAAGGGATACATCAGT chrUn_5387 GAAAATTTATGCACTTTAATTATTTATGTGGTTGAAAAGGACACACCAGT SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GGAGGAAAAAGTCATTGAGAGTATATGCAATAGCCTGCCGAAATTGCGGG chr1B_1_TraesCS1B01G004000 GGAGGAAAAAGTCATTGAGAGTATATGCAATAGCCTGCCGAAATTGCGGG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TGAGGAAAACGTCATTGACAATATATGCAAGCGGCTGCAAAAATTGCAGG chr1B_3020 TGAGGCAAAAGTCATGGAGAGTATATGCAAGAGGCTACGTAAACTACGGG chr1A_3117 GGAGGAAAAAGTCATGGAGAGTATATGCAAGAGGCTACATAAATTGCGGG chr1B_3176 GGAGGAAAAAGTCATTGAGAGTGTATGCAATAGCCTGCCGAAATTGCGGG chr1B_5285 TGATGAAAAAGTCTTTGAGAGTATATGCAAGAGGCTGCCGAAATTGCGGG chr1B_5285 CGAGGAAAAAGTCATTGAGAGTATATGCAAGAGGCTGCCGAAATTGCGGG chr1B_5285 TGAGGTAAAATTCTTTGAGAATATATGCAAGAGGCTACCGAAATTGCGGG chr1B_5285 CGAGGAAAAAGTCATTGAGAGTATATGCAAGAGGCTGCCGAAATTGCGGG chr1B_5285 CGAGGAAAAAGTCATTGAGAGTATATGCAAGAGGCTGCCGAAATTGCGGG chr1B_5285 GGAGGAAAAATTCATTGAGAACTTGTGCATGAGGCTGCCCAAGCTGCGGG chr3B_5285 TGAGGAAAAATTCATCAACGGTATATGCAAGAGGCTTCTTAAGTTACGGG chr7D_5285 TGAGGAAAAAGTCATTGAGAGTATATTCAAGAGGCTACAGAAATTGCGGG chr6B_5301 TGACGAAAAATTCATTGAGTGCATATGCAAGATGCTGCCAAATTTGCGGG chr4B_5325 TGAGGAAAGAGTGATCGAGAGTATATGCAAGAGACTGCCGAAATTGCGGG chr4D_5325 TGAGGAAAGAGTGATTGAGAGTATATGCAAGAGACTGCCGAAATTGCGGG chr1B_5350 TGAGGCAAAAGTCATGGAGAGTATATGCAAGAGGCTACGTAAACTATGGG chrUn_5387 TGAGGAAAAAGTCATTGAGAGTATATGCAATAGTCTGCCGCAATTGCGGG SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TACTCGCTGTTGCTTTCAGCCGGGAGCATCATC------CAATCACACGA chr1B_1_TraesCS1B01G004000 TACTCGCTGTTGCTTTCAGCCGGGAGCATCATC------CAATCACACGA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TACTGGCGGTTGCTTTTAGCCGGGAACATCTTG------AAATCACCAAA chr1B_3020 TATTGGCTGTTGCTTTCAGCCGGGAACATCTTC------CAATCTTACGA chr1A_3117 TATTGGCTGTTGCTTTCAGCCGGGAACATCTTC------CAATCATACAA chr1B_3176 TACTGGCTGTTGCTTTTAGCCGGGAGCATCATC------CAATCACACGA chr1B_5285 TACTAGCCGTTGCTTTCAGGGAGACGTATTATG------GAATCATGGAA chr1B_5285 TACTAGCCATTGCTTTCACCAAGAAACATTTTG------GAATGAGGAAA chr1B_5285 TATTGGCCGTTGAACTCAGCCTGGAATATGATC------CACTCGAACAA chr1B_5285 TACTAGCCATTGCTTTCACCAAGAAACATTTTG------GAATGAGGAAA chr1B_5285 TACTAGCAGTTGCTTTCGGGGAGGACTATTATG------TAATCAGGAAA chr1B_5285 AATTCGCTGTTACTTACACAGGTGGTAGAACAG------------GGGAA chr3B_5285 CATTACACGTTGCTTTGAGACACGCATATGATC------CAATCAATGCA chr7D_5285 TACTTGCCATAACTTTGAGTTCAGAACATCATGGTCGATACATTAAGAAA chr6B_5301 TACTGGCCATTGATTTAAGCTGGGCTAATACGGGGCCCAAT--------- chr4B_5325 TACTGGCCATTCCTTTCATCCTAGAACGTTATCCGGGG------ATGGAA chr4D_5325 TACTGGCCATTCCTTTCATCCTAGAACGTTATCCGGGG------ATGGAA chr1B_5350 TATTGGCTGTTGCTTTCAGCCGGGAACATCTTC------CAAACTATGAT chrUn_5387 TACTGGCTGTTGCTTTCAGCCGGGAACATCTTC------CAATCACACAA SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CCCAGTAAGTTCTCGATCCCAGAATCCATTAGCCAGTTAAAGCACCTATG chr1B_1_TraesCS1B01G004000 CCCAGTAAGTTCTCGATCCCAGAATCCATTAGCCAGTTAAAGCACCTATG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 CCCAAGAAGTTCTCGATCCCAGAATCCATTGGCCAGTTAAAGGACCTATG chr1B_3020 CCCAAGAAGTTCCTGGTACCAGAATCCATTAGACAGTTAAAGGACCTATG chr1A_3117 CCCAAAAAGTTCCTGTTACCAGAATCCATTAGTCAGTTAAAGGACCTATG chr1B_3176 CCCAATAAGTTCTCGATCCCAGAATCCATTAGCCAGTTAAAGCACCTATG chr1B_5285 CACAAAAAGTTCTCGGTCCCAAAATCTATTGCTCAGTTAAAGCACCTACG chr1B_5285 TCCAACAAGTTATCGGTCCCAAAATCTATTGCTCAGTTAAAGCACCTACG chr1B_5285 CCTATTAAGTTCTCGATCTCAGAGTCCATTAGTCATTTAAAGCACCTACG chr1B_5285 TCCAACAAGTTATCGGTCCCAAAATCTATTGCTCAGTTAAAGCACCTACG chr1B_5285 CCCGATGGGTTCTCTGTCCCAGAATCTATTGCTCAGTTAAAGCACCTACG chr1B_5285 CCCAATAAGTTCTTCTTCCCAGAGGCTATTAGTATGTTAAAGCATCTACG chr3B_5285 CCCAATAAGTTCTCCGTCCCAGAATCTATTAGTCAATTAAAGCATCTACG chr7D_5285 CCCGACAAGATCTCAGTCTCAGAATCTATCAGTCAGTTAAAGCATCTACG chr6B_5301 ---------TTCTCATTGCCAGAATCTATTAGTCAGTTAAAGCACCTACG chr4B_5325 CCAAATGAGTTGTCTGTCCCAGGATCCATTACCCAGTTAAAGCACCTACG chr4D_5325 CCAAATGAGTTGTCTGTCCCAGGATCCATTACCCAGTTAAAGCACCTACG chr1B_5350 GG--AGAAGTTCCTGGTACCAGAATCCATGAGACAGTTAAAGGACCTATG chrUn_5387 CCCAGTAAGTTCTCGATCGCAGAATCCATTAGCCAGTTAAAGCACCTATG SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CTATCTTGCTTTCAGGACAT---TCAAATGCACTGTAATTTTACCAAGTG chr1B_1_TraesCS1B01G004000 CTATCTTGCTTTCAGGACAT---TCAAATGCACTGTAATTTTACCAAGTG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 CTATCTTTCTTTCAGGACAT---TCGAATGCACCGTAATTTTACCAAGCA chr1B_3020 CTATCTTGCTTTCAGGACAT---TCGAATGCACCGTAATTTTACCAAGCA chr1A_3117 CTATCTTGCTTTCAGGACAT---TCGAATGCACCGTAATTTTACCAAGCA chr1B_3176 CTATCTTGCTTTCAGGACAT---TCAAATGCACTGTAATTTTACCAAGTG chr1B_5285 CTATCTTGCTTTCAGGACAGACTACTCATGCTCTGTAACTTTACCAAGGG chr1B_5285 CTATCTTGCTTTCAGGACAGATATGGCATGCTCTATAACTTTACCAAGGG chr1B_5285 CTATCTTGCTTTGACGACAAATTTGAGATGTACGGTATATTTACCATGGG chr1B_5285 CTATCTTGCTTTCAGGACAGATATGGCATGCTCTATAACTTTACCAAGGG chr1B_5285 CTATCTTGCTTTAAGGACACATAGTTCATGCGCTGTAACTTTACCAAGCG chr1B_5285 TGATTTTGTTTTCTGGATAGAGGGTCCATGTACGGTTGTTTTTCCAGTCG chr3B_5285 GTATCTTGCTTTCAGGATAAACCACCAATGCACTGTTCTTCTACCAGGCG chr7D_5285 CTATCTCGCTATACGGGCAAAAGTGGCGTGCAGGATAATTTTACCAAGCA chr6B_5301 GTATCTTTCGTTCATAGCAT---ATTCATGCATGGTGATTTTACCAATCG chr4B_5325 CTATCTTGCTTTCAGGACAAATAGAGCATGCATGTTAAGCATACCAAGAG chr4D_5325 CTATCTTGCTCTCAGGACAAATAGAGTATGCATGTTAACCATACCAAGAG chr1B_5350 CTATCTTGCTTTCAGGACAT---TCGAATGCACCGTAATTTTACCAAGCA chrUn_5387 CTATCTTGCTTTCAAGACAT---TCAAATGCACTGTAATTTTACCAAGTG SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CGCTA---GCTGAACTTCACCATATTCAGCTGCTAGATTTTGGTCATCAT chr1B_1_TraesCS1B01G004000 CGCTA---GCTGAACTTCACCATATTCAGCTGCTAGATTTTGGTCATCAT chr2A_139 -------------ACTTCATCATAGTCACCTACTAATCCTTTA------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 CACTAACTAAGAAACTTCACCATATCCAGCTGCTGGACTTTGGTCGTCAT chr1B_3020 CACTAACGAATAAACTTCACCAGATGCAGCTGCTAGACTTTGGTAATCAT chr1A_3117 CACTAACGAATAAACTTCACCAGATGCAGCTGCTAGACTTTGGTAATCAT chr1B_3176 CGCTA---GCTGAACTTCACCATATTCAGCTGCTAGATTTTGGTCATCAT chr1B_5285 CACTA---ACAAAACTTCATCATATCCAGCTGCTAGATTTTTA------- chr1B_5285 CACTA---ACGAAACTTCACAATATCCAGCTACTAGATTTTAGCGGC--- chr1B_5285 CGCTA---ACTAAACTTCACCATATCCAGCTGCTAGATTTT------CAT chr1B_5285 CACTA---ACGAAACTTCACAATATCCAGCTACTAGATTTTAGCGGC--- chr1B_5285 CACTA---CCGAAGCTTCACCATATCCAGCTGCTAGATTTTTA------- chr1B_5285 CACTA---ACTAAACTTCACCATCTCCGGCTGCTAAATCTTGGTGCC--- chr3B_5285 CTCTA---AATAAGCTTCAGCATATCCAGCAGCTAGATTTTGGTTCT--- chr7D_5285 CACTA---GCTAAACTTTACCATATCCAGATGCTAGATTTTGGTAAC--- chr6B_5301 CACTA---GCTAAACTTCACCATATCCAGATGCTAGATTTTGTTGAT--- chr4B_5325 CACCA---AATAAACATCACCGTGTCCAGGTGCTAGATTTTGGTGAT--- chr4D_5325 CACTAAATAAACTACCAAGAGTTATCCAGGTGCTAGATTTTGGTGAT--- chr1B_5350 CACTAACGAATAAACTTCACCAGATGCAGCTGCTAGACTTTGGTAATCAT chrUn_5387 CGCTA---ACTGAACTTCACCATATTCAGCTGCTAGATTTTGGTCATCAT SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AG------CCAAACTTCTGAATTTACTACTGATAACCTTACCAACCTGCG chr1B_1_TraesCS1B01G004000 AG------CCAAACTTCTGAATTTACTACTGATAACCTTACCAACCTGCG chr2A_139 --CCTTCCCTGCCGATGTTCCTT--------------------------- chr7B_341 --------------------------TACTGAAAACTGATACTCCCTCCG chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GGCCATGGCCAAATTTGGGAATTTACACTTGATAACCTTATCAACCTGCG chr1B_3020 AGCAATGGCCAAATTTGGGAATTTACCCTTGATAACCTTATGAACCTGCG chr1A_3117 AGCCATGGCCAAATTTGGGAATTTACCCTTGATAACCTTATTAACCTGCG chr1B_3176 AG------CCAAACTTCTGAATTTACTACTGATAACCTTACCAACCTGCG chr1B_5285 --CTTGGCAAAAATGTTGGAATTCCCCTTTGCTGACCTTGTCAACTTGCG chr1B_5285 ------GGCCGAATGTTGGAATTCCCCTTTGCTGACCTTGTCAACTTGCG chr1B_5285 GG------AGAACCTTGGGAATTTGCCTTACCTGGCCTTATCAACCTGCG chr1B_5285 ------GGCCGAATGTTGGAATTCCCCTTTGCTGACCTTGTCAACTTGCG chr1B_5285 --CAAGGGCAAAATACTGGAATTCCCCTTTGCTGATCTTGTCAAATTGAG chr1B_5285 ------AGTGAAAAAGTGGAGTTTACCTCTCTTGACCTTCTCAATTTGCA chr3B_5285 ------TGCAATATTTTGGGATCTACCTCTCTTGATCTTCTCAACTTGCA chr7D_5285 ------TGTGAAAAAATGGAATTGCCCACTGCTGACCTTATCAGTATGCG chr6B_5301 ------TGTGAATTTTTGGGATTTGGTTCTACTGGCCTTATCAACTTGCG chr4B_5325 ------GGCAAATTGGATGAGTTTAACTGTGTTGACCTTATCAACCTGCG chr4D_5325 ------GGCAAATTGGATGAGGTTAACTGTGTTGACCTTATCAACCTGCG chr1B_5350 AGCAATGGCCAAATTTGGGAATTTACCCTTGATAACCTTATGAACCTGCG chrUn_5387 AG------CCAAACTTCGGAATTTACTACTGATAACCTTACCAACCTGCG SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GTACATAATGTGCAA---G---AGTGTGAAATGTCCTAACATAGGAAGGT chr1B_1_TraesCS1B01G004000 GTACATAATGTGCAA---G---AGTGTGAAATGTCCTAACATAGGAAGGT chr2A_139 -----------------------------------------------GGG chr7B_341 TTTCATAATGT--------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GTACATAATTTGTGA---G---AACTTGGAATGTCCGAGCATAGGCAGGC chr1B_3020 ATACATAATTTGTGA---G---AACTTAGACTGTCCTAACATAGGCAGGC chr1A_3117 ACACATAATTTGTGA---G---AAGTTGGAATGTCCTAACATAGGCAGGC chr1B_3176 GTACATAATGTGCCA---G---AGTGTGAAATGTCCTAACATAGGAAGGT chr1B_5285 GCACATGTTCTGCTG---GCCAAACTTGAAATTCCCTAACTTGGGCAGGC chr1B_5285 GCACATGTTCTGCTG---GCCAAACTTGAAATTCCCTAACTTGGGCAGGC chr1B_5285 GCACGTGTTCTGTTCGCGATA---TGTAAAATTTCGTAACATAGGCAGCC chr1B_5285 GCACATGTTCTGCTG---GCCAAACTTGAAATTCCCTAACTTGGGCAGGC chr1B_5285 GCACATGTTCTGCCG---GCCAAACTTGAAATTCCGTAACTTGGGCAGGC chr1B_5285 GCACATAATCTGGAA---G---TGCATGAACTTTCCTAACGTAGGCAAGC chr3B_5285 GCACATAATCTGCGG---G---GCCATGAAATTTCCTAACATAGGCAAGC chr7D_5285 GCGTTTATTGTTGCCATTGACAGGCGTGAAATTTCCTAACCTAGGCAGGT chr6B_5301 GCACCTGTTCCTCCG---CACAAAAGTGAAATGTCCTAACATAGGAAGGC chr4B_5325 CCACATAAATTCCGGCTCATCGCAGTTCCCATTTCGTAACATAAGCAGGC chr4D_5325 GCACATAAATTCCGGCTCATCGGAGTTCCAATTTCGTAACATAAGCAGGC chr1B_5350 ATACATAATTTGTGA---G---AACTTAGACTGTCCTAACATAGGCAGGC chrUn_5387 GTACATAATATGCGA---G---AGTGTAAAATGTCCTAACATAGGAAGGT SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TGATCTCACTCCAAGCATTACCAT---GCAACACATTCACAGTAAGGAAT chr1B_1_TraesCS1B01G004000 TGATCTCACTCCAAGCATTACCAT---GCAACACATTCACAGTAAGGAAT chr2A_139 CAATCTCTTTGTAAATGTTCTGAA---GAACCACATTTAAAACAAGTACC chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TTATCTCACTCCAAGCGTTACCAA---GCAGCAGGTTCACAGTAAGGAAT chr1B_3020 TGATCTCACTCCAAGCGTTACCAA---GCAGCAGGTTCACTGTGAGGAAT chr1A_3117 TGATCTCACTCCAAACGTTACCAA---GCAGCAGGTTCACAATAAGGAAT chr1B_3176 TGATCTCACTCCAAGCGTTACCAT---GCAACACATTCACAGTAAGGAAT chr1B_5285 TGATCTCACTCCAAACACTACCAT---G------CTTCACAGTAAGCAAT chr1B_5285 TGATCTCACTCCAAACACTACCAT---G------CTTCACAGTAAGCAAT chr1B_5285 TGATCTCACTCCGAACGATACCAG---------GCTTCACAGTAAGGAAT chr1B_5285 TGATCTCACTCCAAACACTACCAT---G------CTTCACAGTAAGCAAT chr1B_5285 TGATATCACTCCAAACGCTACCATCATG------CTTCACAGTAAGTAAT chr1B_5285 TGACCTCACTCCAAACATTG---TCATA------CTTCATAGTAAGGAAT chr3B_5285 TGACTTCACTCCAAACGATCCCAG---G------CTTCACAGCAAGTAAT chr7D_5285 CAAAGTTGCTCCAGACGCTACCAG---G------CTTCACTGTAAGGGAT chr6B_5301 TGGTCTCGCTCCAAACAGTACCTA---C------CTTTGAAGTAAGGAAT chr4B_5325 TGACCTCACTCCAAACGATAGCAT---GTG---CCTTCAGAATAAGGGAT chr4D_5325 TGACCTCACTCCAAACGATAGCAT---GTG---CCTTCGGAATAAGGGAT chr1B_5350 TGATCTCACTCCAAGCGTTACCAA---GCAGCAGGTTCACTGTGAGGAAT chrUn_5387 TGGTCTCACTCCAAGCGTTACCAT---GCAACACATTCACAGTAAGGAAT SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 G------------------------------------------------- chr1B_1_TraesCS1B01G004000 G------------------------------------------------- chr2A_139 TCTTGTTGTTGCTGACTTGGACTTAACCCCGACACCTTTAGGCAAAGGGG chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 G------------------------------------------------- chr1B_3020 G------------------------------------------------- chr1A_3117 G------------------------------------------------- chr1B_3176 G------------------------------------------------- chr1B_5285 G------------------------------------------------- chr1B_5285 G------------------------------------------------- chr1B_5285 G------------------------------------------------- chr1B_5285 G------------------------------------------------- chr1B_5285 G------------------------------------------------- chr1B_5285 G------------------------------------------------- chr3B_5285 G------------------------------------------------- chr7D_5285 G------------------------------------------------- chr6B_5301 G------------------------------------------------- chr4B_5325 G------------------------------------------------- chr4D_5325 G------------------------------------------------- chr1B_5350 G------------------------------------------------- chrUn_5387 G------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 CAGACCTTGTTCGCCCTGGGTCGCTGCTGCTCGCCGCTCTGATACCAACT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 --TACAGGGTTATGAGATAAAGCAACTGAGAGACCTAAACGACCTTCGTG chr1B_1_TraesCS1B01G004000 --TACAGGGTTATGAGATAAAGCAACTGAGAGACCTAAACGACCTTCGTG chr2A_139 GATGCAGGGGGATGAGTAGAATCTGCTTGTAGATCAGAAGACAAAGAGGC chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 --AGCAGGGTTATGAGATAAAGCAGCTTAGGGACCTAAACAAGCTTCGCG chr1B_3020 --AACATGGTTATGAGATAAAGCAGCTTAAGGACCTAAACAAGCTTCGTG chr1A_3117 --AAAAAGGTTATGAGATAAAGCAGTTGAGGGACCTAAACAAGCTTCGAT chr1B_3176 --TACAGGGTTATGAGATAAAGCAACTGAGAGACCTAAACAAGCTTCGTG chr1B_5285 --AACAGGGTTATGAGATAAGGCAGCTGAGGGACCTAAACAAGCTTCAAG chr1B_5285 --AACAGGGTTATGAGATAAGGCAGCTGAGGGACCTAAACAAGCTTCAAG chr1B_5285 --AAAAAGGGTGTGGGGTAAATCAACTAAGGGACCTAAACAAGCTCAGCG chr1B_5285 --AACAGGGTTATGAGATAAGGCAGCTGAGGGACCTAAACAAGCTTCAAG chr1B_5285 --AACAAGGGTATGAGGTGAAGCAGCTGAGGGACGTAAACAAGCTTCGTG chr1B_5285 --AAAAAGGTTATGAGGTAAATCAGCTAAGGGATCTGAACAAGCTTCGCG chr3B_5285 --AACAAGGTTGTGAGTTAAAGCAGTTGAGGGATCTTAACAAGCTTCATG chr7D_5285 --AACAAGGGTGTGAGTTAAAGCAATTGAGGGACCTAAACAAGCTTCGCG chr6B_5301 --AACAAGGGTATGAGGTAAAGCAGGTGAGTGACCTAAACAAGCTTCGTG chr4B_5325 --CACCAGGATATGAGGTAAAGCAGCTGAGGGACCTAAACAAGCTTCGCG chr4D_5325 --CACCAGGATATGAGGTAAAGCAGCTGAGGGACCTAAACAAGCTTCGCG chr1B_5350 --AACATGGTTATGAGATAAAGCAGCTTAAGGACCTAAACAAGCTTCGTG chrUn_5387 --GACAGGGTTATGAGATAAAGCAACTGAGAGACCTAAACGAGCTTCGTG SNPs ------------------------------------------S------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GCAATCTGGTAATCAATGGCCTTGAAAATGTCAAAGGCAAGGAGGAAGCT chr1B_1_TraesCS1B01G004000 GCAATCTGGTAATCAATGGCCTTGAAAATGTCAAAGGCAAGGAGGAAGCT chr2A_139 ACACG--------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GCAGCCTGACAATCAATGGCCTTGAAAATGTTAAAAGCAAGGAGGAAGCT chr1B_3020 GCAGCCTGACAATCTATGGCCTTGAAAATGTTAAAAGCAAGGAGGAAGCT chr1A_3117 CCAGTTTGGACATTTATAGCCTTGAAAATGTTAAAAGCAAGGTTAAAGCT chr1B_3176 GCAATCTGGTGATCAATTGCCTTGAAAATGTCACAAGCAAGGAGGAAGCT chr1B_5285 GACGACTGAGAATCAAGGGCCTGCAAAATGCTAATAGCAAGGAGGAAGCT chr1B_5285 GACGACTGAGAATCAAGGGCCTGCAAAATGTTAAAAGCAAGGAGGAAGCT chr1B_5285 GCAGCCTGCATATCTATGGCCTTGAAAATGTTAAAAGCATGGAGGAAGCT chr1B_5285 GACGACTGAGAATCAAGGGCCTGCAAAATGTTAAAAGCAAGGAGGAAGCT chr1B_5285 GCAGACTGGACATCTATGGCCTTGAAAATGTGAAAAGCAAGGAGGAAGCT chr1B_5285 GCAAATTGAACATCAGTGGGCTTGAGAATGTTAAAAGCAAGGAGGAAGCT chr3B_5285 GAAGCCTGCGGATTGTTGGACTTGAAAATGTTAAAAGCAAGGAGGAAGCT chr7D_5285 GCAGCCTGTGGATCAGGGGGCTTGAAAATGTTCAGACCAAGAAGGAAGCT chr6B_5301 GTAGATTGGAGATCAGTGGCCTTGAAAATGTTACAAGCAAGGAGGAAGCC chr4B_5325 GCAGTCTGGAGATAAATGGTCTTGAAATTGTTAAAAGCAAGGAGGAAGCT chr4D_5325 GCAGCCTGGAGATAAATGGTCTTGAAATTGTTAAAAGCAAGGAGGAAGCT chr1B_5350 GCAGCTTGACAATCTATGGCCTTGAAAATGTTAAAAGCAAGGAGGAAGCT chrUn_5387 GCAATCTGGTAATCCATGGCCTTGAAAATGTCACAAGCAAGTAGGAAGCT SNPs -----------------------------------S-------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -----------------------------------GGCAAGGAGGAAGCT forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CTTGAAGCCAATCTAGGTGCCAAGGAACGG------------------AT chr1B_1_TraesCS1B01G004000 CTTGAAGCCAATCTAGGTGCCAAGGAACGG------------------AT chr2A_139 -----AGCAAATCTCAGGGAAAGCTGGCTGGGTTGCTACGAACTGACCCT chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GTTGAAGCCAATCTTGGTGCCAAGGATCGG------------------TT chr1B_3020 GTTGTAGCCAATATAGGTGCCAAGGATCGG------------------TT chr1A_3117 GTTGAAGCCAATCTAACTGCCAAGGATCGG------------------TT chr1B_3176 CTTGAAAGCAATCTTGCTGCCAAGAAACGG------------------GT chr1B_5285 CTTGAAGCCAATCTAGCTGCCAAGGAACGG------------------CT chr1B_5285 CTTGAAGCCAATCTAGCTGCCAAGGAACGG------------------TT chr1B_5285 CTTGAAGCAAATCTAGCTGCCAAGGAACGG------------------CT chr1B_5285 CTTGAAGCCAATCTAGCTGCCAAGGAACGG------------------TT chr1B_5285 CTTGAAGCCAATCTAGCTGCCAAGGAACGG------------------CT chr1B_5285 CTTGAAGCCAATCTAACTGCCAAGGAAGGG------------------AT chr3B_5285 CTTGAAGCCAATCTAGCTGCCAAGGAAAGG------------------CT chr7D_5285 CTCGAAGCCAATCTTGCTGCCAAGGAAAGG------------------CT chr6B_5301 CTTGAAGCCAATCTAGCTGCCAAGGAAGGG------------------CT chr4B_5325 CTTGAATCCAAACTAGCTGCCAAGGAACGG------------------CT chr4D_5325 CTTGAATCCAAACTAGCTGCCAAGGAACGG------------------CT chr1B_5350 GTTGTAGCCAATATAGGTGCCAAGGATCAG------------------TT chrUn_5387 CTTGAAAGCAATCTTGCTGCCAAGAAACGG------------------CT SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 CTTGA--------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CACA------GAACTGATGTTGGAATGG---GATTATGATGATGATACAA chr1B_1_TraesCS1B01G004000 CACA------GAACTGATGTTGGAATGG---GATTATGATGATGATACAA chr2A_139 CTCG------TCTTTTTCATTACAAGGGGAAA---GTCTTCATCTAGTAC chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GAAG------GAACTGAAGTTGGAATGG---G---GTGATGATGGTACAA chr1B_3020 GAAG------GAACTGAAGTTGGAATGG---G---GTGATGATGGTACAA chr1A_3117 GAAG------GAACTGAAGTTGGAATGG---G---GTGATGATGGTACAA chr1B_3176 CAAG------GAACTGAGCATAAGATGGACCGATGGTTCTGCA---AGGT chr1B_5285 CACA------GAACTGTGCTTGGTATGG---GGTTGTGATAATGATACAA chr1B_5285 AACA------GAACTGAGTTTCGAATGG---------GATGATGATACCA chr1B_5285 CACT------AAACTGACATTGTCATGGGATG---GTGATGATGGTACAA chr1B_5285 AACA------GAACTGAGTTTCGAATGG---------GATGATGATACCA chr1B_5285 CACA------GAACTGTGCTTGGTATGGTTTG---GTGATGATGATACAA chr1B_5285 CGCG------ACACTGGTGCTGGAATGG---G---ATGGTGATGACACAG chr3B_5285 CGCG------GAACTTAAATTGCACTGGGAAG---GTGATGATGATACAG chr7D_5285 CACA------CAAGTGTCACTCGAGTGG---------CGTGCTAATAGGA chr6B_5301 CACTTATTTTAAACTGAAATGGCATGGG---G---GCGATGATAGTACAA chr4B_5325 CAGC------GAACTGAAACTGCAGTGG---A---GGCACAGTTCG---- chr4D_5325 CAGC------GAACTGAAACTGCAGTTTG------GGCACAGTTCG---- chr1B_5350 GAAG------GAACTGAAGTTGGAATGG---G---GTGATGATGGTACAA chrUn_5387 CAAG------GAACTGACCATAAGATGGACCCATGGTTCTGCA---AGGT SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GGTGCAGTCCAGAAGTTGAAGCAGAGGTACTTGAGGGCCTGTGCCCTCCT chr1B_1_TraesCS1B01G004000 GGTGCAGTCCAGAAGTTGAAGCAGAGGTACTTGAGGGCCTGTGCCCTCCT chr2A_139 TCTGTTCTCCCCTTTAGTCACTAGGGG----------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GGTGCAGCTCAGAAGTTGAAGCAGAGGTGCTTGAGGGCCTGTGCCCTCCT chr1B_3020 GGTGCAGTTCAGAAGTTGAAGCAGAGGTGCTTGAGGGCCTGCGCCCTCCC chr1A_3117 GGTGCAGTTCAGAAGTTGAGGCAGAGGTGCTTGAGGGCCTGTGCCCTCCC chr1B_3176 GGTGCAGTCCAGAAGTTGAAGCAAAGGTACTTGAGGGCATGTGCCCTCCT chr1B_5285 GGTGCAGTCCAGAAGTTGAAGCAGAGGTACTTGAGGGCCTGTGCCCTCCC chr1B_5285 GGTGCAGTTCAGAAGTTGAAGCAGAGGTACTTGAGGGCCTGTGCCCTCCT chr1B_5285 GGTGCAGTCCAGAAGTTGAAGCAGATGTACTTGAAGGCATGTGCCCTCCC chr1B_5285 GGTGCAGTTCAGAAGTTGAAGCAGAGGTACTTGAGGGCCTGTGCCCTCCT chr1B_5285 GGTGCAGTCCAGAAGTTGAAGCAGAGGTACTTGCGGGCCTGTGCCCTCCC chr1B_5285 TGTGCAGTCCAGAAGTCCAAGCAGAAGTACTTGAGGGCCTGTGTCCTCCC chr3B_5285 GGTGCAGTCCAGAAGTTGAAGCAGAGGTACTTGAGGGCCTGTGCCCTCAT chr7D_5285 GCTGCAATCCAAAAGTTCAAGCAGATGTGCTCGAGTGTCTTTGTCCTCCC chr6B_5301 GGTGCAGTCCAGAAGTTGAAGCAGAGGTACTTGAGGGCCTACGCCATCCC chr4B_5325 --------CCAGAAGTCCAAGCAGAGGTACTTGAGGGCCTGTGCCCTCCC chr4D_5325 --------CCAGAAGTCCAAGCAGAGGTACTTGAGGGCCTGTGCCCTCCC chr1B_5350 GGTGCAGTTCAGAAGTTGAAGCAGAGGTG------GGCCTGCGCCCTCCC chrUn_5387 GGTGCAGTCCAGAAGTTGAAGCAGAGGTACTTGAGGGCCTGTGCCCACCT SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 GCGAAACTTGAAACACTGATGATCGAGGGCTACAAAGGTTCGAGGTACCC chr1B_1_TraesCS1B01G004000 GCGAAACTTGAAACACTGATGATCGAGGGCTACAAAGGTTCGAGGTACCC chr2A_139 ------------AGACTTACAAAATAAGGTTACAGAGAA----------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GTTGGTATCGAAGAACTGATTATTGCAGAATATGAAAGCTTGAGGTACCC chr1B_3020 GTAGGTCTTGAAGAACTGATTATCTCAGGCTATAAAAGCTCGAGAAACCC chr1A_3117 GTAGGTCTTCAAGAACTGATTATCTCCGGCTATGAAAGCTCGAGGTACCC chr1B_3176 GCGGATCTTGAAACACTGATGATCGAGGGCTACAAAGGTTCGAGGTACCC chr1B_5285 GTGGGGCTTCAAAAACTTAATATATATGGATACAGAGGTTCAAGGTACCC chr1B_5285 GCGGGGCTTCAAAAACTTGATATATTTGGATACAGAGGTTCAAGGTACCC chr1B_5285 GCTGGGCTTGAAACACTATTTATCGAACGCTACAATGGTACGAGGTACCC chr1B_5285 GCGGGGCTTCAAAAACTTGATATATTTGGATACAGAGGTTCAAGGTACCC chr1B_5285 GTGGGGATTCAAAAGCTTGTAATACATGGATACAGAGGTTCAAGGTACCC chr1B_5285 ACTGGGCTTGAAACACTAAAATTGG-TGGTTACAATGGTTCGAGGTACCC chr3B_5285 GTGGGGCTTAAAACACTTCACATCTACAGCTACGAAGGTTCGAGGTGCCC chr7D_5285 ACATCACTTACAAAACTGAATATCTTGAACTACAAAGGCTCGAGGTACCC chr6B_5301 GTGGGGCTTGAAGTACTGGATATCGAGCACTTCAAAGGTTCAAGCTACCC chr4B_5325 GTGGCGCTTCAAACACTGGAACTGCATTGCTACAATGGCTCGAGGTACCC chr4D_5325 GTGGGGCTCCAAACACTGGAATTGCGTTCCTACGATGGCTCGAGGTACCC chr1B_5350 GTAGGTCTTGAAGAACTGATTATCTCAGGCTATAAAAGCTCGAGAAACCT chrUn_5387 GTGGATCTTGAAACACTGATGATCGAGGGCTACAAAGGTTCGAGGTACCC SNPs ---S---------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 AGAATGGATGGTGG----------------CCCGACGGACCTGCAAAATC chr1B_1_TraesCS1B01G004000 AGAATGGATGGTGG----------------CCCGACGGACCTGCAAAATC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 AGATTGGATGGTGGATAAGCAGAAAGGTGGCCCAAAGAACCTGAAAAAAC chr1B_3020 AGATTGGATGGTGGGTAAACAGAATGGTGGCCCAGAGAACCTGCAAAAAC chr1A_3117 AGATTGGATTGTGGGTAAGCAGAAAAGTGGCCCAAAGAACCTGCAAAAAC chr1B_3176 AGATTGGATGGTGGATCAGCAGAACAGTGGCCCAAAGGACCTGCAAAATC chr1B_5285 AGATTGGATGGTGGGTAAGCAGAGCGGTGGCCCACAGGGCCTGCGAAATC chr1B_5285 AGATTGGATGGTGGGTAAGCAGAGCGGTGGCCCAGAGGGCCTGCGAAATC chr1B_5285 ATACTGGAA---------------TGGTACCCCAAAGGACCTGCAAAACC chr1B_5285 AGATTGGATGGTGGGTAAGCAGAGCGGTGGCCCAGAGGGCCTGCGAAATC chr1B_5285 AGATTGGATGGTGGGTAAGCAGAGCGGTGGCCCAGATGGCCTGCGAAATC chr1B_5285 ATATTGGATGGTGCGTAAGGAGACCGGTGGCCCCAATAACCTGCAAAGAC chr3B_5285 AAATTGGATGGTGGGTAAGCAGAATGTTGGCC---------TGCAAGAAC chr7D_5285 AAAATGGATGGTGTGCAAGCAGAACGGCGGTCCAAAGGACCTGAAAGAAC chr6B_5301 AGATTGGATGTTG------------------------------------- chr4B_5325 AGATTGGATGGT-------------------------------------- chr4D_5325 AGATTGGATGGT-------------------------------------- chr1B_5350 AGATTGGATGGTGGGTAAACAGAATGGTGGCCCAGAGAACCTGCAAAAAC chrUn_5387 AGATTGGATAGTGGATCAGCAGAACAGTGGCCCAAAGGACCTGCAAAGTC SNPs ---------------------------------S-S-------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTCACTTATATAAGTGGAGTCAATTGGGACCTGGTCCTGAACTTGAGGCT chr1B_1_TraesCS1B01G004000 TTCACTTATATAAGTGGAGTCAATTGGGACCTGGTCCTGAACTTGAGGCT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TTGTCTTGGGTGGATGGAGCCAACCGGGACCTGGTCCTGAACTTGTGACT chr1B_3020 TTGTGTTGTTTGGATGGAGCCAACCGGGATCTTGTCCTGAACTTGAGGCG chr1A_3117 TTGTGTTGTTTGGATGGAGCCAACCGGGACCTGGTCCTGAGCTTGAGGTT chr1B_3176 TTGAGTTAAAAACTTGGAGTCAACCGGGACCTGGTCCTGAACTTGAGGCT chr1B_5285 TTCATCTCCGGGGATGCAGCCAACTGGGACCTGGTCCTGAATTTGAGGCT chr1B_5285 TTTATCTCTGGGGATGCAGCCAACTAGGACCTGGTCCTGAATTTGATGCT chr1B_5285 TTCTTTTCTTGGAATGCGGCCAACTCGGATGTTTTCCTGGACTTGAGGCT chr1B_5285 TTTATCTCTGGGGATGCAGCCAACTAGGACCTGGTCCTGAATTTGATGCT chr1B_5285 TTCAACTCCAGCGATGCAGCCAACTGGGACCTGGTCCTCAATTTGAGGCT chr1B_5285 TTGAATTATCTGGATGGAAACAACCGGGACCTGGTCCGGAGCTCGTGGCT chr3B_5285 TTCTATTATATGGATGGAATCAACTTGGACCTGCTCCGGAAATTGCGGTC chr7D_5285 TTCGGCTCACTGGGTGGAACCAACTGGGACGTGCTCCTGACCTCGTGGCT chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 TTGTGTTGTTTGGATGGAGCCAACCGGGATCTTGTCCTGAACTTGAGGCG chrUn_5387 TGCGGTTACAATGTTGGAGTCAACTGGGACTTGGTCCTGTACTTGAGGCT SNPs -----------------------S-------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTCCCTCATCTTTGTCGGCTAGTGCTTCAGAATTGCCGCTGGGACACATT chr1B_1_TraesCS1B01G004000 TTCCCTCATCTTTGTCGGCTAGTGCTTCAGAATTGCCGCTGGGACACATT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TTCATTCATCTTCGTGTGCTCTGGCTTGGTCGGTGCAACTGGGATGCCTT chr1B_3020 TTCGTTCAGCTTCGTGTGCTCTGGCTTGGTCACTGCAGGTGGGACACATT chr1A_3117 TTCGTTCATCTTCGTGTGCTCTGGCTTGGTCACTGGAGGTGGGACGCCTT chr1B_3176 TTCCCTCATCTGCGTATGCTCAGGCTTGTGGACTGCAGCTGGGTCACCTT chr1B_5285 TTCCCTCATCTTGGTGTGCTCCAGATTTGGTTCTGCAGCTGGGACTCCTT chr1B_5285 TTCCCTCATCTTCGTGTGCTCGAGATTTGGTCCTGCAGCTGGGACTCCTT chr1B_5285 TTCCGTCATCTTCGTTTGCTCTGTCTTGTTCACTGCGACTGGTACACCTT chr1B_5285 TTCCCTCATCTTCGTGTGCTCGAGATTTGGTCCTGCAGCTGGGACTCCTT chr1B_5285 TTCCCTCATCTTCGTGTGCTCTATATTTGGTGCTGCAGCTGGGACTCCTT chr1B_5285 TTCATTCATCTTCGTGTGCTATGGCTTACCAGCTTCAGCTGGGACACCTT chr3B_5285 TTCCCTTGTCTTCGTATACTCTGTCTTTGCGACTCCAGCTGGGAGGCGTT chr7D_5285 TTCACTCTTCTTTCTTCGCTAGATCTTTGGAACTGTGGATGGGACGCCTT chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 TTCCTTCATCTTCGTGTGCTCTGGCTTGGTCACTGCAGGTGGGACACATT chrUn_5387 TTCCCTCATCTTCGTCAGCTAGAGCTTATGGGCTGCAGCTGGGACACCTT SNPs ----------------S-----S----SS---S---S------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ACCCACCAATATGGAACAACTCACATCGCTGAAGGCACTCACTATATCTA chr1B_1_TraesCS1B01G004000 ACCCACCAATATGGAACAACTCACATCGCTGAAGGCACTCACTATATCTA chr2A_139 ----------------------------CTCTAGAAACTAGTACGAGAAA chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 ACCAGGCAATATGGAGCACCTTACATCGCTCAAGGAACTACAAATCGAAG chr1B_3020 GCCAGCCAGTATTGAGCACCTCACATCGCTCAAGGAACTGGAAATCGAAG chr1A_3117 ACCAGGCAATATTGAGCACCTCAGATCGCTCAAGGAACTGGAAATTGAAG chr1B_3176 ACCAGGCAATATGGAACACCTCACATCGCTCAAGCATTTGGATATCTCTT chr1B_5285 ACCAGGCAACATGGAGCACCTCACGTTGCTCAAGAAACTAGATATCGTGG chr1B_5285 AGCAGGCAACATGGAGCACCTCACGTTGCTCAAGGAACTGCATATCGTGG chr1B_5285 ACCAGGCAATATAGCGCACCTCACATCACTAAAGGAACTGTATATCAGAT chr1B_5285 AGCAGGCAACATGGAGCACCTCACGTTGCTCAAGGAACTGCATATCGTGG chr1B_5285 GCCAGGCAACATGGAGCACCTCACGTTGCTCGAGAATCTAAATATCGTGG chr1B_5285 ACCAGGCAACTTGGAGCACCTCATATCGCTCAAAGAACTTTTTATTTATT chr3B_5285 ACCAGATGATATGGAGCACCTCATGTTGCTCAAGGAACTGGATATCATTA chr7D_5285 GCCAGGCAATATGGAGCACCTCACATTGCTAAAGAGACTGGTGATGTACA chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 GCCAGCCAGTATTGAGCACCTCACATCGCTCAAGGAACTGGAAATCGAAG chrUn_5387 ACCAGGCAATATGGAACACCTCACATCGCTCAAGGATCTGACTATATCTA SNPs ---SS-------------S-----------S----S---S---------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CTTGTT---------GGAATATCTGGTCGCTTCCTACATTGCCCAGGTCT chr1B_1_TraesCS1B01G004000 CTTGTT---------GGAATATCTGGTCGCTTCCTACATTGCCCAGGTCT chr2A_139 ACTCTACAGAGTGTACAGTGCTGACTAGTAGAT----------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 GGTGCT---------TGAATATCCGGTCGCTTCCAACACTGCCCCGTTCT chr1B_3020 GGTGCT---------TGAATATCCGGTCGCTTCCAACACTGCCCCGATCT chr1A_3117 GGTGCT---------TGAATATCCGGTCGCTTCCAACACTGCCCCGATCT chr1B_3176 TATGTT---------GGAATATTCGTTTGCTTCCTACATTGCCTAGGTCT chr1B_5285 GTTGCG---------AGAATATCCGGTCTCTTCCAACACTGCCCCAGTCT chr1B_5285 GATGCA---------AGAATATCCGGTCTCTTCCAACACTGCCCCAGTCT chr1B_5285 GTTGCC---------ACTATATCCGGTCGCTTCCAACACTGCCACAGTCG chr1B_5285 GATGCA---------AGAATATCCGGTCTCTTCCAACACTGCCCCAGTCT chr1B_5285 GATGCA---------AGAATATCCGGTGTCTTCCAGCACTGCCCCAGTCT chr1B_5285 TCTGTCGTCGTTACAGCAATGTCCAGTGGCTTCCAACACTGCCCCAGTCT chr3B_5285 GATGCG---------AGAACATCCGATCTCTTCCCACACTTCCCAGGTCT chr7D_5285 AATGCT---------TGAATATCCTGTCTCTTCCAACATTGCCCCAGTCT chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 GGTGCT---------TGAATATCCGGTCGCTTCCAACACTGCCCCGATCT chrUn_5387 CTTGTT---------TGAATATCCGTTTGCTTCCTACATTGCCTAGGTCT SNPs -----------------------S-------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CTTGAATATTTTTATCTTAATTACTGCAATGATGAGTTCATAAAGTCTTG chr1B_1_TraesCS1B01G004000 CTTGAATATTTTTATCTTAATTACTGCAATGATGAGTTCATAAAGTCTTG chr2A_139 -------------------------------------------------- chr7B_341 ----------------------------------AGTGCCTATAGATTTT chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 CTTGAGAAGTTTTGTGTTGCATACTGCAGTGGTGAGTTCACGAAGTCGTG chr1B_3020 CTTGAGAAGTTTTCTGTTGCATACTGCAGTGGTGAGTTCACGAAGTCATG chr1A_3117 CCTGAAAAGTTTTCTGTTGCATACTGCAGTGGTGAGTTCACGAAGTCATG chr1B_3176 CTTGAATATTTTTATCTTAGTTACTGCAATGATGATTTCATAAAGTCTTG chr1B_5285 ATTAAGCAATTGTATCTTGCTTTCTCCAACTATGAGTTGATGAAGTCTTG chr1B_5285 ATTGAGCAATTGTATCTTGCTTCCTGCAGCGATGAGTTGACGGAGTCCTG chr1B_5285 CTTGAGGAGTTTGTACTTCTATTCTGCAATGATGAGTTCCTGGAGTCTTG chr1B_5285 ATTGAGCAATTGTATCTTGCTTCCTGCAGCGATGAGTTGACGGAGTCCTG chr1B_5285 ATTGAGTGGTTTTCTCTTACTTCCTGCAACGATGAATTGATGGAGTCTTG chr1B_5285 ATTGAGGAGTTTCATCTTAGGTCCTGCAATCATGAGTTGATAAAGTCCTG chr3B_5285 CTTGAGTGGTTTTATCTTGCTTCCTGCAATGTGGAATTCATGAGCTCTTG chr7D_5285 CTCGAGAGGTTTCTACTCCGCAAGTGCAACGATGGGTTCATGAAGTCTTG chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 CTTGAGAAGTTTTCTGTTGCATACTGCAGTGGTGAGTTCACGAAGTCATG chrUn_5387 CTTGAACATATTTATCTTGGTAACTGCAATCATGAGTTCATAAAGTCTTG SNPs -------------------S------------------------------ forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TGGAACAGTTGGACATC--------------------------------- chr1B_1_TraesCS1B01G004000 TGGAACAGTTGGACATC--------------------------------- chr2A_139 -------------------------------------TAAAGAAAA---- chr7B_341 TGCAAAAGTCAAACATTACAAACTTTGACCATATCTATAAAGAAAAGTAG chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 TCAAACAGTCAGACATC--------------------------------- chr1B_3020 TCAAACAGTCAGACATC--------------------------------- chr1A_3117 TCAAACAGTTAGACATC--------------------------------- chr1B_3176 TGGAACAGACGGGCATC--------------------------------- chr1B_5285 TAAAACAGTCGGACATC--------------------------------- chr1B_5285 TAAAACAGCCGGACATC--------------------------------- chr1B_5285 TCGAACTGTAGGACATC--------------------------------- chr1B_5285 TAAAACAGCCGGACATC--------------------------------- chr1B_5285 TAAAACAGCCGGACATC--------------------------------- chr1B_5285 TCAAACAGTGGGACATC--------------------------------- chr3B_5285 TAAAACAGTCGGACATC--------------------------------- chr7D_5285 TCTAACAATCGGACATC--------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 TCAAACAGTCAGACATC--------------------------------- chrUn_5387 TTGAACAGTCAGGCATC--------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 --------AGAAAACCAAAGGAACAGGTACTCCACTT------------- chr7B_341 GTACATCTAGAATACCAAATGGACATCACTGGATACATCGCGAGTTATAT chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 -------------------------------------------------- chr7B_341 TTTCAGAATGTATATGTTTAATATTGTAGATGTAGATAGTTTTCTCTATA chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 --------CAAATTGTCGAAAGCTGGAGCATGTTCGTCTTAAAGAAATTA chr1B_1_TraesCS1B01G004000 --------CAAATTGTCGAAAGCTGGAGCATGTTCGTCTTAAAGAAATTA chr2A_139 -------------------------------------------------- chr7B_341 TACTTGGTCAAAGTTGGCAAAGTTTGACTTTCATAAAAATCTATAGGCAC chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 --------CAAATTG----------------------------------- chr1B_3020 --------CAAATTG----------------------------------- chr1A_3117 --------CAAATTG----------------------------------- chr1B_3176 --------CAAATTGTCGAAAGTTGGAGCACGTTCATCAAAAGGAAATTA chr1B_5285 --------CAAACTGGCAAAAGATTGAGCA-------------------- chr1B_5285 --------CAAACTGGCAAAAG---------------------------- chr1B_5285 --------CAAACTGGCAAAAGATTGAGCA-------------------- chr1B_5285 --------CAAACTGGCAAAAG---------------------------- chr1B_5285 --------CAAACTGGCAAAAGATTGAGCA-------------------- chr1B_5285 --------CAAACTGGCAAAAGATTGAGCA-------------------- chr3B_5285 --------CAAA-------------------------------------- chr7D_5285 --------CAAACTGGGAAAAGATTGAGCA-------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 --------CAAATTG----------------------------------- chrUn_5387 --------CAAATTGTCAAAAGCTGGAGCAGGTTCATCGAAAGGAAATTA SNPs -----------------------------------S--S----------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TGCGCTTGGCATGTAAGACTGTAGCCCCGATCGCCATTGTTCCTCCATTT chr1B_1_TraesCS1B01G004000 TGCGCTTGGCATGTAAGACTGTAGCCCCGATCGCCATTGTTCCTCCATTT chr2A_139 -------------------------------------------------- chr7B_341 TACATTGTG----------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 TACGCATGGCATGTAAGACTGTAGTCCCAATCGCCATTGTTCCTCTATTT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 TACGCATGGCATGTAAGACTGTAGTCCCAATCGCCATTGTTCCTCTATTT SNPs -S----------------------S---S----------------S---- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 TTTTTAATCTGTAACAATATGTCCCTAATATTTTTGATCTGCTACTACCT chr1B_1_TraesCS1B01G004000 TTTTTAATCTGTAACAATATGTCCCTAATATTTTTGATCTGCTACTACCT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 TTTATCTGTA--AACATTACCTCCGTAATATTTTTGATCTGCTGCTCCTC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 TTTATCTGTA--AACATTACCTCCGTAATATTTTTGATCTGCTGCTACCT SNPs ---S-SSSSSSS----S--SS---S------------------S------ forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 CTGC---TTATGTATCTTCATCCATTTGCTACTCATTGATGTTTCAGGA- chr1B_1_TraesCS1B01G004000 CTGC---TTATGTATCTTCATCCATTTGCTACTCATTGATGTTTCAGGAC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 TGCTTAATTACGTCTCTTCATCCATTTGCTACTCATTGACGTTTCAGGAC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 CTGC---TTATGTTTCTTCATCCATTTGCTACTCATTGACGTTTCAGGAC SNPs -------------S-------------------------S---------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 AGGAAGGCACTGGAGGATGTCTGATGGTCTTTGCATCAATCAGTTACGAG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 AGGAAGGCAGTGGAGGAGGTCTGTTGATTTTTGCATCAATTAATCACGAG chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 AGGAAGGCAGTGGAGGAGGTCTGTTGAGTTTTTCATCTATTAATCACGAG SNPs ---------S-------S-----S--S-S-----------S-S-S----- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GGGCATCGTAAGACAGTTGGTTCAAAAAACAAAAAAGAACCCGCTGCTTT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 AGGCATCTTAAGACGGTTC----AAAAATATAG------CCCGCTGCATT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 AGGCATTTTAAGACAGTTGGTTAAAAAAAATAG------CCCGCTGCATT SNPs S------S--------------S------SS-SSSSSSS--------S-- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 CGTGGATGATTCCCGTGCTACTATCTGGTGGGCGCTAAACTCATGATTTG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 CGTGGCTAATTCCCGTGCTACTATCTGGTGGGCGCTACACTCATGATTTG chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 CGTGGCTGATTCCCGTGGTACTATCTGGTGGGCGCCAAACTCATGATTTG SNPs -----S-------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GTAATGTGTGACGTGTTTGTTGCTTGGTAACACGGCTTGAACCTGTCAGC chr2A_139 ----------------------------------AGTTGAAGCTAGCTGC chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 GTAAGGTGTGACGTGTTTATTGCTTGGTAGCACGACTTGAACCTAGTAGC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 GTATGGTGTGACATGTTTATTGCTTGGTAGCACGGCTTGAACCTAGTAGC SNPs ----S-------------S----------S--------------SS---- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 AGCAAGTAAATTCATTTGCGCTCAATCTGATCTAA--------------- chr2A_139 ATCA---------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 AGCAAATAAACTTGTGATGTTCAATTTGATTTGTCAGTAGAATAGTATGG chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 AGCAAATAAACTTGTGATGTTCAATTTGATTTGTGAGTACAAT------- SNPs -----S----S-SS-SSSSSSSS-S-SSSS-SSSS--------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 -------------------------------------------------- chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 AGTACTAGTACTATTCAGTTTCAAGATCTTGGGTATATGAAGCTCCAATT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 AGCACTAGTACTATTAAGTTTGAAGATCTTGGCTATATGCAGCTCCAATT SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 ----------------------------------TATGTAACGT------ chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 CTGTTGAGGAGTCGTGTCTTGATGGATCTCTGCTTATGTAACGTTTCAGC chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 CTGTTGAGGAGTCTTATCTTCATCT-TCTCTGCTTATGTAACGTTTCAGC SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 ---TTGGTTCAATCGGACTTTTG-AATCTGATTTTTTGTAAACATAAGCA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 AACTTGGTTCAATCGGACTTTTG-AATCTGATTTGTTATAAACATAAGCA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 AACTTGGTTCAATCGGATTTTTGAAATCTGATTTGTGATAAACATAAGCA SNPs ----------------------------------S--S------------ forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GGGCAGATAGTTGTTGCATTAGTTAGTTCCTTGAACGAACGAATGATTTT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 GGGCAGATGGTTGTTGCATTAGTTAGTTCCTTGAACGAACGAATGATTTT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 GGGCAGATGGTT------------AGTTCCTTGAACGAACGAATGATTTT SNPs --------S----------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 CGAGTGACTTTCCTATTTCTTTTTCCTTCAAATAAACGAAATCCTCTTTA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 CAAGTGACTTTGCTATTTCTTTTTCCTTCAAATAAACGAAATCCTCTTTA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 CGAGTGACTTTGCTATTTCTTTTTCCTTCAAATAAACGAAATCCTCTTTA SNPs -----------S-------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 TGGGAGGGGGTTAAATGAATGGACGG------------------------ chr2A_139 -------------------------------------------------- chr7B_341 ----------------GAATGGAGGGAGTATAGAA--------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 TGGGAGGGGGTTAAATGAATGGACGGACAGAAATAACCGTGGACCAGCGA chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 TGGGAGGGGCTTAAATGAATGGACGGACAGAAATAACAGTCGACCAGCGA SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 --TCAAATCAAAGCCATTTGCACGTGCTAACAATATATGTTGTGCTGAAG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 GGTCATATCAAAGTCAGTTGCACGTTCTAACAATATATGCTGAGCTCAAG chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 GGTCATATCAAAGCCATTTGCACGTTCTAACAATATATGC--TGCTCAAG SNPs -----S-------------------S-------------S------S--- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GAATTTTGCAAGTGATCCTGTGAACACATTTGCACATGTAGTACTCCCTT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 GAATTTTGCAACTGATCCAGTGAACACATTTGGAGATGTAGTACCCCCTT chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 GAATTTTGCAAGTGATCCTGTGAACACATTTGCACATGTCGTACTCCCTT SNPs -------------------------------------------------- forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 CATCCTAAAATAAGTGTTTTATTTTCTTTTTTTTTAAACTTTGGTTGCGG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 CATCCTAAAATAAGTGT--------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 CATCCTAAATTAAGT----------------------------------- SNPs -----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 ATGACTGCACGCATGCGATCATGGCCTCGGACGGAAGATCGCCTCGGGCG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GGACCCCGCGGCTCGGGCATACAGTCTCTGATCGGGCCGATTCCGGATCC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 ATTGTAAAGTTCACGGAGAGTCGAGGACCGTGGAAGAGGACGACTGGGAC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------AGTTCACGGAGAGTCGAGGA----------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 CAAGGCCGCGTGCTGCGTCTTGCCAAACAGTGAAATACCCGCTCGTCACG chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 CGGGACGGAGAACGGTCCACACGGGCCTACGAAGCTTCGGAAGGGTCCCC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 TTCTTTGCGAGAGAATTCGCAAACGTAGCCTTGACCTCTCCGTGAGGTTT chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 GGGACGCTTTCGAGGAATTTTGAAAAAATATCTTGTGGCACGGCTACCGA chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 -------------------------------------------------- chr1B_1_TraesCS1B01G004000 AGCACCCATGCGCGCCACTGTTTGCATGCACGGGATCCCACGCGCCGTCC chr2A_139 -------------------------------------------------- chr7B_341 -------------------------------------------------- chr3A_946 -------------------------------------------------- chr1A_947 -------------------------------------------------- chr3D_947 -------------------------------------------------- chr3B_947 -------------------------------------------------- chr1B_952 -------------------------------------------------- chr1A_981 -------------------------------------------------- chr1B_1010 -------------------------------------------------- chr1B_1186 -------------------------------------------------- chr1B_2988 -------------------------------------------------- chr1B_3020 -------------------------------------------------- chr1A_3117 -------------------------------------------------- chr1B_3176 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr1B_5285 -------------------------------------------------- chr3B_5285 -------------------------------------------------- chr7D_5285 -------------------------------------------------- chr6B_5301 -------------------------------------------------- chr4B_5325 -------------------------------------------------- chr4D_5325 -------------------------------------------------- chr1B_5350 -------------------------------------------------- chrUn_5387 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_768 -------------------------------------------------- reverse_5365 -------------------------------------------------- forward_771 -------------------------------------------------- reverse_5395 -------------------------------------------------- forward_2304 -------------------------------------------------- reverse_5554 -------------------------------------------------- forward_5437 -------------------------------------------------- reverse_6915 -------------------------------------------------- forward_5637 -------------------------------------------------- reverse_7992 -------------------------------------------------- forward_6137 -------------------------------------------------- reverse_8065 -------------------------------------------------- forward_7122 -------------------------------------------------- reverse_9536 -------------------------------------------------- forward_8767 -------------------------------------------------- reverse_11208 -------------------------------------------------- input_sequence_4600 ---------------------------------- chr1B_1_TraesCS1B01G004000 CGACGTCCTTTGCTCTACCGGTTGACCGAGTATT chr2A_139 ---------------------------------- chr7B_341 ---------------------------------- chr3A_946 ---------------------------------- chr1A_947 ---------------------------------- chr3D_947 ---------------------------------- chr3B_947 ---------------------------------- chr1B_952 ---------------------------------- chr1A_981 ---------------------------------- chr1B_1010 ---------------------------------- chr1B_1186 ---------------------------------- chr1B_2988 ---------------------------------- chr1B_3020 ---------------------------------- chr1A_3117 ---------------------------------- chr1B_3176 ---------------------------------- chr1B_5285 ---------------------------------- chr1B_5285 ---------------------------------- chr1B_5285 ---------------------------------- chr1B_5285 ---------------------------------- chr1B_5285 ---------------------------------- chr1B_5285 ---------------------------------- chr3B_5285 ---------------------------------- chr7D_5285 ---------------------------------- chr6B_5301 ---------------------------------- chr4B_5325 ---------------------------------- chr4D_5325 ---------------------------------- chr1B_5350 ---------------------------------- chrUn_5387 ---------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_226 ---------------------------------- reverse_4001 ---------------------------------- forward_768 ---------------------------------- reverse_5365 ---------------------------------- forward_771 ---------------------------------- reverse_5395 ---------------------------------- forward_2304 ---------------------------------- reverse_5554 ---------------------------------- forward_5437 ---------------------------------- reverse_6915 ---------------------------------- forward_5637 ---------------------------------- reverse_7992 ---------------------------------- forward_6137 ---------------------------------- reverse_8065 ---------------------------------- forward_7122 ---------------------------------- reverse_9536 ---------------------------------- forward_8767 ---------------------------------- reverse_11208 ----------------------------------