>input_sequence_45974
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------------------------CTCCAATCCTC--CTTGAACCTT---------AGAGAGAGAGAGACCAAGAATGGC
TCGTGAGATGAATGGCTACTTCAGCCACCCTCCGCCTCCGCCTCCGGTTCCGGCGCCGTAC---CAGGAGGAGGCGGCCG
CGGACGTGGACGACGCGGAGGACGGCAGCGGCGGGCAGGGGAAGCTCTGCTCCAGGGGCCACTGGAGGCCCGCCGAGGAC
GCCAGGCTCAAGGAACTCGTCGGCCAGTACGGCCCCCAGAACTGGAACCTCATCGCCGAGAAGCTCGACGGCAGATCAGG
TAATAAGAA---AAATAAAACAACCTCTAA----TATGTGGAGTTCCTCCGATGCAATGCTGTTTCATTTCGGATTCGAA
GATGCAT----TGAATGCGCAAACGGAACTACTCCTA-CTACTGGTTTCTTTTACTGCAACCATCTTCCGTTT-------
--CGTGTGGATAACTTCTTTTCTTTCTTTCTTTCTT------------GTAAAAGTAAAAACATGCATTTTAGTATTAAT
TTGGAGTGTGTTGCGGTTAACGC-------AATGGTGATCGTGGGTTGTGCCTGATTCG--TTCGTGGTTTATTTTGTGG
TGATGTCGGCCAACAGGGAAAAGCTGCCGTCTGCGGTGGTTCAACCAGCTGGACCCGCGGATCAACCGCCGGGCGTTCAC
GGAGGAGGAGGAGGACCGGCTGATGGCGGCGCACCGCGCCTACGGCAACAAGTGGGCCCTCATCGCCCGCCTCTTCCCCG
GCCGCACCGACAACGCCGTCAAGAACCACTGGCACGTCCTCATGGCCCGCAGGCAGCGGGAGCAGTCCGGCGCCTTCCGC
CGCCGCACCAAGCCCGCCT---CCTCCTCCTCCTCCTCCATCGCCCCGGCGCCGCACTACCCA------GGCGTCTTCCT
CCAGCACCAGCACCAGCACCAGCACCACTACCAGCACCACGGGGCTTCTCCCATTCCCATGCCGCTCCAGCCGTTCGCCA
TGGGGGTGGCCATAGCAACCGGGGTGTACAGCAAGGCC------GCCACGGCCACGGCCAGCCGCGCCTACAGCGGCGGC
GAGTCCGACGAGTCGGCGTCCACCTGCACCACCGACCTCTCCCTCAGCTCCGGCAGCGCCGCCGTCCCCTGCTTCTACCA
CCACCAGGGTACGTGCCTCCCTCGCTGCATGCTTGCCCTCAAGGCTCAAGTCCCAAGCC-----CCCCAAGCTGTTGTTG
TTTTGTTGCGTCGTCAGTCGTCAGTCCTCCACATGGACATGGAGATGGACATGGACATGGCCAGCGTTTTGATCCGAGTC
CGACTGACATGATGGTCTTTGGTGCAGGCTACGACATGGCTCCGCAAGCTCACGCCGTGACCCAGGCGTTCTCGCCGAGC
GCGCGCTCCGCCTTCTCCGCCCCGTCGTCCTCGTCGGCGCGGCAACAGCAGCGCAG---GCAGCAGCAGCACGAGGAGCA
GGATGGCGACAAGCTCAGCCTGCCCTTCTTCGACTTCCTGGGCGTGGGCTCGACATGACC----------GGGCGGGGCG
GTGCGGTGTACAGGTGGAGGCCGATATCATCATCATCGTCGTCGTCCTAAGGGAGGCGGCCAATCC----TTCCTAGCTA
GTTAAGCAAGG-TTAGAGTCTAGAAGAACCAGACTAGGAGAAGATGAGGAGGATGAGGAGTTAAGTAGTTTTATTTATGG
CGATGAATGTGACCTCT---------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G191400
ACTTTGACCACGGTTACTATACTTATCTGAATGGCAAGCAATCCCCTGGTCTTACATAAATGTGTAGATTTTTTTTG-TG
TGGGGGAAGGTGTAGATGACTGAGTTACAAAAACTTGGTAGCTTGCTTGCTTTGCTTAGGTGTTTCAAATATTTGACTCG
GCAGCACTGAAAAGATATTGAAATATTCATCTACTAATAACTACTAATAGTAGTAAGCAAAAGTGCAGCCTTGGGATATA
TAGCAATTGTCAGCCATATCCGCAAACATAAACACAGGATGTGTAAC-CCTGCTTGCGCTCAATATTGGCGTATATTTGA
CATAAATAAGGGGAGCAGAAGTAGTAAATGCATGAGATGGATATAGATACGACG--CATAGTAATGTGATGAAGAAATG-
--------TGGGTATGCTACGGGGTGCGCATAGGGGGAAGGGGCGTTCCGGTGGGTTTGTCAAGGTGGCAAGGGACAAAG
TTCCACCCC------GGCCCCTGGTAGTGGTTGGGATTGGACTCCCCAAACCCACACGAGTGGCCTCTGGAACCCAAAAA
AAGAATCATAAAACCA---------------------------------------TCTCTCTCTCCCTCTCTCTCTCTGC
CCTTCTTTTCCAACCCTTTTGCCATGAGTCTCAAAGTAAGGGAAGCCCCC-AAACCCAACCAAACCGAGTATCCGACCCA
AGCACCCAACAATACAACTGCTGTACAAAACAAGGTTACCACCGTAAAAGAAAAGAAAAGAAAAGGAAAAACCAATTAGT
GGTAAGCTTAGCCGAGAGATATAAAGTTAAAGTTAGGAGGCATTAATTGGTTTCTTGTTTGGCATTTTGTTGCGGGTGGT
GAAGCAAGAACAAGAGAA-GAGAGGAGGCGGCCTCCTCCTCCCCGCCTCCA-CCTCCTATATT---AGAGAGGGACTCCC
CTCGCAGCGGCATCAACAGCAAACAAGAAGCTGTCCCTTTCGCTCTCCTCTCTTCTTCCGTTACCACTCACCCTCCCGCT
CCTCGCCCTTTAAGGCATACCCCTCTCCAATCCTC--CTTGAACCTT---------AGAGAGAGAGAGACCAAGAATGGC
TCGTGAGATGAATGGCTACTTCAGCCACCCTCCGCCTCCGCCTCCGGTTCCGGCGCCGTAC---CAGGAGGAGGCGGCCG
CGGACGTGGACGACGCGGAGGACGGCAGCGGCGGGCAGGGGAAGCTCTGCTCCAGGGGCCACTGGAGGCCCGCCGAGGAC
GCCAGGCTCAAGGAACTCGTCGGCCAGTACGGCCCCCAGAACTGGAACCTCATCGCCGAGAAGCTCGACGGCAGATCAGG
TAATAAGAA---AAATAAAACAACCTCTAA----TATGTGGAGTTCCTCCGATGCAATGCTGTTTCATTTCGGATTCGAA
GATGCAT----TGAATGCGCAAACGGAACTACTCCTA-CTACTGGTTTCTTTTACTGCAACCATCTTCCGTTT-------
--CGTGTGGATAACTTCTTTTCTTTCTTTCTTTCTT------------GTAAAAGTAAAAACATGCATTTTAGTATTAAT
TTGGAGTGTGTTGCGGTTAACGC-------AATGGTGATCGTGGGTTGTGCCTGATTCG--TTCGTGGTTTATTTTGTGG
TGATGTCGGCCAACAGGGAAAAGCTGCCGTCTGCGGTGGTTCAACCAGCTGGACCCGCGGATCAACCGCCGGGCGTTCAC
GGAGGAGGAGGAGGACCGGCTGATGGCGGCGCACCGCGCCTACGGCAACAAGTGGGCCCTCATCGCCCGCCTCTTCCCCG
GCCGCACCGACAACGCCGTCAAGAACCACTGGCACGTCCTCATGGCCCGCAGGCAGCGGGAGCAGTCCGGCGCCTTCCGC
CGCCGCACCAAGCCCGCCT---CCTCCTCCTCCTCCTCCATCGCCCCGGCGCCGCACTACCCA------GGCGTCTTCCT
CCAGCACCAGCACCAGCACCAGCACCACTACCAGCACCACGGGGCTTCTCCCATTCCCATGCCGCTCCAGCCGTTCGCCA
TGGGGGTGGCCATAGCAACCGGGGTGTACAGCAAGGCC------GCCACGGCCACGGCCAGCCGCGCCTACAGCGGCGGC
GAGTCCGACGAGTCGGCGTCCACCTGCACCACCGACCTCTCCCTCAGCTCCGGCAGCGCCGCCGTCCCCTGCTTCTACCA
CCACCAGGGTACGTGCCTCCCTCGCTGCATGCTTGCCCTCAAGGCTCAAGTCCCAAGCC-----CCCCAAGCTGTTGTTG
TTTTGTTGCGTCGTCAGTCGTCAGTCCTCCACATGGACATGGAGATGGACATGGACATGGCCAGCGTTTTGATCCGAGTC
CGACTGACATGATGGTCTTTGGTGCAGGCTACGACATGGCTCCGCAAGCTCACGCCGTGACCCAGGCGTTCTCGCCGAGC
GCGCGCTCCGCCTTCTCCGCCCCGTCGTCCTCGTCGGCGCGGCAACAGCAGCGCAG---GCAGCAGCAGCACGAGGAGCA
GGATGGCGACAAGCTCAGCCTGCCCTTCTTCGACTTCCTGGGCGTGGGCTCGACATGACC----------GGGCGGGGCG
GTGCGGTGTACAGGTGGAGGCCGATATCATCATCATCGTCGTCGTCCTAAGGGAGGCGGCCAATCC----TTCCTAGCTA
GTTAAGCAAGG-TTAGAGTCTAGAAGAACCAGACTAGGAGAAGATGAGGAGGATGAGGAGTTAAGTAGTTTTATTTATGG
CGATGAATGTGACCTCTCTGGTTTCACTCCTCCTCAGTTTTGCTGCTGATTACAGTACTTATTCAGATGG----AAAAGA
AGTCGCATGTCATGTAATGTAATGTAATGGTGGCAACCCGAACTTAGTTTCTTTCATGTCCTCTT------------GTC
TCTATTCCATTTGTTTGTGCCGA----AGAAGCAAGAAAATAACCAAAAATTGC--CCCCCTGCAGCAACGAGCATTTGA
TATGTCCGTTGTTGTCCGTTCCATTCCATTGTCGGTGCCCACCCAGCCGCTGGCGACGGCGAGAGAAAAACAAATTAATG
GCTCACTCAGTTTACTAAGCCGGTGCACTAGGAGTAAGAAGACTAGGACTAGGAGCGGACCGGCCTGGCCGGCGTGATCG
GTGCGTACGACGAG-----TATGTGAACGCAGCGGCGAGCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTGTTGCATTC
ATCAACAAGAACGACGAGTCATTTTCCCCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCA--AGGGTCGGGTCGGGG
CGGGGCGGGTCGGGGCCGGGCGGACGGGCGTGG------------TCTCGGGGGATTCCGTTGGACTGTTGCGCGTGAGC
ATGGCC--TGGTGGTGGTGGTGGCCGTGGCGGGGACGGATGGATGGTGCCTGGGCGGAGGAGGAGGACCTCGCCTCATGC
ATCCTCACGCACGCACGCACGCCTTTGCAAGCCAACGAAACTGCTGTTGCAACAGCATCTCGTTGCTTCTTCTCTTCTG-
--ACTCCGTTACCAGTTGCTCATCTCGTCACTCGCTCGCTCGCT-TTCTGTAATTGCTGCTACCTGCA-A----CTGCCT
GCTCGCCTCATCACCGGCGACAATCATGTCTTAATTATGGCCTCTGCAACTGCAAC-----------CAACCTACACGGT
CAATGCTAAAACCAAAACTG-ATATCTCAACTGACCAAGAAACCGTGCAGCGAGCAATCACTGCAATGTGAGTTTCTCAC
CAGTTTTTACCACCCACAGTGCCGGTTCTGCCCATGTTTGAC
>chr3A_2
-CTTTGACCACGGTTACTATACTTATCTGAATGGAAGGTAATCCCCTGGTCTTACGTAAATGTGTAGATATTTTCTTTTG
TGGGGGAAGGTGTAGATGAGTGAGTTACAAAAACTTGGTAGCTTGCTTGCTTTGCTTAGGTGTTCCAAATATTTGACTCT
GCAGCGCTGAAAATATATTCAAATCTCCATCTACTAGTAAT------TACTAGTAACCAAAATTGCAGCCTTGGGATA--
--GCAACTGCCAGCCATATCCCCAAACATAAACACAGGATGTGTAAG-CCTGCTTGCGCTCAAAATTGGCGTATATTTGA
CATAAATAACGGGGGCAGAAGTAGTAAATGCATGAGATGGATATAGATACACATCCCATAGTAATGTGGTGAAGAAAGAA
ATGTGGGTTGGGTATGCTACGGGGTGCGCGTAGGGAGAAGGGGCGTTCCGGTGGGTTTGTCAAGGTGGCAAGGGACAGAG
TTCCACCCCGGCCCCTGCCCCTGGTAGTGGTTGGGATTGGACTCCCCAAACCCACACGAGTGGCCTCTGGAACCCAAAAA
AGAATCATTCATAAAATCACCGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGC
CCTTCTTTTCCAACCCTTTTGCCATGAGTCTCAAAGTAAGCGAAGCCCCCCAAAGCCAACCAAACCGAGGTTAC------
-------------------------------------ACAACCGAAAAAGAAAAGAAAAGAAAA------ACCAATTAGT
ATT-AGCTTAGCCGAGAGATATAAAGTTAAAGTTAGGAGGCATTAATTGGTTTCTTGCTTGGCATTTAGTTGCGGGTGGC
GAAGCAAGAACAAGAGAA-GAGAGGAGGCGGCCTCCTCCTCCCC--CTCCCGCCTCCTATATT---AGAGAGGGACTCCC
CTCGCAGCGGCATCAACAGCAAACAAGAAGCTGTCCCTTTCGCTCTCCTCTCTTCTTCCGTTACCACTCACCCTCCCGCT
CCTCGCCTTTTAAGGCATCCTCCCCTCCAATCCTC--CTCCTTGAACCTTGAC-AGAGAGAGAGAGAGACCAAGAATGGC
TCGTGAGATGAACGGCTTCTTCAGCCACCCTCCGACTCCGCCTCCGG------CGCCGTACCCGCAGGAGGAGGCGGCCG
CGGACGTGGACGACGCGGAGGACGGCGGCGGCGGGCAGGGGAAGCTCTGCTCCAGGGGGCACTGGAGGCCCGCCGAGGAC
GCCCGGCTCAAGGAACTCGTCGGCCAGTACGGGCCCCAGAACTGGAACCTCATCGCCGAGAAGCTCGACGGCAGATCAGG
TATAA----------------AACAACCTAATACTATGTGGAGTTCCTCCGATGCAATGCTGTTTCATTTCGGATTCGAA
GATGCATGCATTGAATGCGCAAACGGAACTAGTCTACTGCTTTGGTTTCTTTTACTGCGACCATCTTCCGTTTATTTGTT
TTCGTGTGGATAACTTCTTGGACTTGTTTCTTTCTTTCTTTCTTGTAGTAAAAT------ACATGCATTTTACTAGTAAT
TTGGAGTGTGTTGCGGTTAACGCAGTGGTGAATGGTGATCGTGGGTTCTGCGCC---CTGATTCCTGGTTTATTTTGTGA
TGATGTCGGCCAACAGGGAAAAGCTGCCGCCTGCGGTGGTTCAACCAGCTGGACCCGCGGATCAACCGCCGGGCCTTCAC
GGAGGAGGAGGAGGACCGGCTGATGGCGGCGCACCGCGCCTACGGCAACAAGTGGGCCCTCATCGCCCGCCTCTTCCCCG
GCCGCACCGACAACGCCGTCAAGAACCACTGGCACGTCCTCATGGCCCGCAGGCAGCGGGAGCAGTCCGGCGCCTTCCGC
CGCCGCAGCAAGCCCGCCT---CCTCTTCCTCCTCCTCCATCGCCCCGGCGCCGCACCACCCGGCCCCGGCCGTCGTCCT
CCAGCACCAGCACCAGCACCAGCACCTGTACCAGCACCACGGGGCATCTCCCATTCCCATGCCGCTCCAGCCGTTCGCCA
TGGGGGTGGCCATAGCTACCGGGGTGTACAGCAAGGCCGCTACGGCCACGGCCACGGCCAGCCGCGCCTACAGCGGCGGC
GAGTCCGACGAGTCGGCGTCCACCTGCACCACCGACCTCTCCCTCAGCTCCGGCAGCGCCGCCGTGCCCTGCTTCTACCA
CCACCAGGGTACGTGCCTCCCTCGCTGCATGCTTGCCCTCAAGGCTCAAGTCCCAAGCGCCAAGCCCCAAGCTCTTGTTG
TTTTGTTGCGTCGTCAGTCGTCAGTCCTCCACAT------------------GGACATGGCCAGCGTTTTGATCCGACTC
CGACTGACATGGTGGTCTTTGGTGCAGGCTACGACATGGCTCCGCTAGCTCACGCCGTGACCCAGGCGTTCTCACCCAGC
GCGCGCTCCGCCTTCTCCGCCCCGTCGTCCTCGTCGGCGCGGCAACAGCAGCGCAGGCAGCAGCAGCAGCACGAGGAGGA
GGATGGCGACAAGCTCAGCCTGCCCTTCTTCGACTTCCTGGGCGTGGGCTCGACATGACC-----GGGCGGGGCGGGGCG
GTGCGGTGTACAGGTGGAGGCCGATATCATCATCATCATCATCATCCTAAGGGAGGCGGCCAATCC----TTCCTAGCTA
GTTAAGCAAGG-TTAGAGTCTAGAAGAAGCAGACTAGGAGAAGATGAGGAGGATGAGGAGTTAAGTTGTTTTATTTATGG
CGATGAATGTGACCTCTCTGGTTTCACT-CTCCTCAGTTTTGCCGCTGATTACAGTACTTATTCAGATGGGATTAAAACA
AGTCGC----------ATGTAATGTAATGGTGGCAACCCGAACTTAGT----TTCATGTCCTCTT------------GTC
TCTATTCCATTTGTTTGTGCCGATCGAAGAAGCAAGAAAATAACTAGTAAAAATTGCCCCCTGCAGCGACGAGCATTAGA
TATGTCCGTTGTTGTCCATTCCATTCCATTGTCGGTGCCCACCCAGCCGCCGGCGACGGCGAGAGAGAAACAAATTAAAG
GTTCACTCAGTTTACTAAGCCGGTGCACTAGGAGTAAGA---CTATGACTAGGAGCGGACCGGCCGGGCCGGCGTGATCG
GTGCGTACGACGAG-----TATGTGAACGCAGCGGCGAGC--------CTTTCTTTCTTTCTTTCTTTCTTGTTGCATTC
ATCAACAAGAACGACGAGTCATTTTCCTCTCTCGCTCTCTCTC-TCACGGGGC-------------GGGACGGGGCGGGG
CGGGGCGGGTCGGGGCCAGGCGGGCGGGCGGGCATGGTCTCGGCCTCTCGGGGGATTCCCTTGGACTGTTGCGCGTGAGC
A-------------------------TGGCGGGGACGGATGGATGGTGCCTCGGCGGAGGAGGAGGACCTCGCCTCATGC
ATCCTCAC-----CACGCACGCCTTTGCAAGCCAACGAAACTGCTGTTGCAACAGCATCTCGTTGCTTCTTCTCTTCTG-
--ACTCCGTTACCAGTTGCT----TCGTCACTCGCTCGCTCGCTTTTCTGTAATTGCTGCTACCTGCACACTGCCTGCCT
GCTCGCCTCATCACCGGCGACAATCCTGTCTTAATTATGGCCTCTGCAACTGCAACTGCAACCAACCCAACCCACACGGT
CAATGCTAAAACCAAA-CTG-ATACCTGAACTGACGAAGAAACCGTGCAGTGAGCAATCACTGCAATGTGAGTTTCTCGG
CAGTTTTTACCACCCACAGTGCCGGTTCTGCCCATGTTTGAC
>chr3B_209
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GTAGTAATCAAAAGTGCAGGGTTGGGATC--
--GCGATTGTTAGCCATATCCCCAAACATAAACACGGGATATGGAAAACCTGCTTGCGCTCAGTATTCGCGTATATTTGA
CATAAATAACGGGAGCAGAAGTAGTAAATGCATGAGATGGATATAGATAC-----------------GATGCAGAAATG-
--------TGGGTATGCTACGGGGTGCGCGTAGAGAGTAAGGGCGTTCCGGTGGGTTTGTCAAGGTGGCAAGGGACAGAG
TTCCACC----CCCCGGCCCCTGGTAGTGGTTGGGATTGGACTCCCCAAACCCACACGAGTGGCCTCTGGAACCCAAAAA
AAGAATCATAAAACCA-----------------------------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGC
CCTTCTTTTCCAACCCTTTTGCCATGAGTCTCAAAGTAAGGGAAACCCCC-AAACCCAACCAAACCGAGTATCCGACCCA
AGCACCGAACAATACTACTGCAC--------------------------------------AAA------ACCAATTAG-
-----------CCGAGAGATATAAAGTTAAAGTTAGGAGGCATTAATTGGTTTCTTGTTTGGCATTTTGTTGCGGGTGGC
GAAGCAAGAACAAGAGAAAGAGAGGAGGCGGCCTCCTCTTCCAC--CTCCA-CCTCCTATATTAGAAGAGAGGGACTCCC
CTCGCAGCGGCATCAACAGCAAACAAGAAGCTGTCCCTTTCGCTCTCCTCTCTTCTTCCGTTACCACTCACCCTCCCGCT
CCTCGCCTTTTAAGGCAAATAGCCCTCCTCCCTAAGACTCCTTCAACCTTAGAAAGAGAGAGAGAGAGACCAAGAATGGC
TCGTGAGATGAATGGCTTCTTCAGCCACCCTCCGCCTCCGCCTCCGG------CGCCGTAC---CAGGAGGAGGCGGCGG
CGGACGTGGACGACGCGGAGGACGGCGGCGGCGGGCAGGGGAAGCTCTGCTCCAGGGGCCACTGGAGGCCCGCCGAGGAC
GCCCGGCTCAAGGAACTCGTCGGCCAGTACGGCCCCCAGAACTGGAACCTCATCGCCGAGAAGCTCGACGGCAGATCAGG
TAATAAGAAGAGAAATAAAACAACAACCTAATACCATGTGGA--------GATGCAATGCTGTTTCATTTCGGATTCGAA
GATGCAT----TGAATGCGCAAACGGAACTACTCTACTCTACTGGTTTCTTTTACTGCAACCATCTTCCGTTT-------
--CGTGTGCATAACTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTGTAAAAATAAATACAATG--------------
--------------GGTTAACGC-------AATGGTGATCGTGGCTTGTGCCTGATTCTGATTCCTGGTTTATTTTGTGA
TGATGTCGGCCAACAGGGAAAAGCTGCCGTCTGCGGTGGTTCAACCAGCTGGACCCGCGGATCAACCGCCGGGCCTTCAC
GGAGGAGGAGGAGGACCGCCTCATGGCGGCGCACCGCGCCTACGGCAACAAGTGGGCCCTCATCGCCCGCCTCTTCCCCG
GCCGCACCGACAACGCCGTCAAGAACCACTGGCACGTCCTCATGGCCCGCAGGCAGCGGGAGCAGTCCGGCGCCTTCCGC
CGCCGCACCAAGCCCGCCTCCGCCTCTTCCTCCTCCTCCATCGCCCCGGCGCCGCACTACG------CGGGCGTCGTCCT
CCAGCACCAGCACCAGTACCAGCACC------------ACGGGGCATCTCCCATTCCCATGCCGCTCCAGCCGTTCGCCA
TGGGGGTGGCGATAGCGACCGGGATGTACAGCAAGGCC------GCCACGGCCACGGCCAGCCGCGCCTACAGCGGCGGC
GAGTCCGACGAGTCGGCGTCCACCTGCACCACCGACCTCTCCCTCAGCTCCGGCAACGCCGCCGTGCCCTGCTTCTACCA
CCACCAGGGTACGTGCCTCCCTCGCTGCATGCTTGCCCTCAAGGCGCAAGTCCCAAGCGCCAAGCCCCAAGCTGTTGTTG
TTTTGTTGCGTCGTCAGTCGTCAGTCCTCCACATGGACATGGA------CATGGACATGGCCAGCATTTTGATCCGAGTC
CGACTGACATGGTGGTCTTTGGTGCAGGCTACGACATGGCTCCGCAAGCTCACGCCGTGACCCAGGCCTTCTCGCCGAGC
GCGCGCTCCGCCTTCTCCGCCCCGTCGTCCTCCTCGGCGCGGAGA------------CAGCAGCAGCAGCACGAGGAGGA
GGATGGCGACAAGCTCAGCCTGCCCTTCTTCGACTTCCTGGGCGTGGGCTCGACATGACCGGGCGGGGCGGGGCGGTGCG
GTGCGGTGTACAGGTGGAGGCCGAGATCATCATCATC---------CTACGGGAGGCGGCTAATCCGGAATTCCTAGCTA
GTTAAGCAAGCCTTATAGTCTAGAAGAAGCAGACTAGGAGAAGATGAGGAG---------TTAAGTTGTTTTATTTATGG
CGATGAATGTGACCTCTCTGGTTTCACCCCTCCTCAGTTTTGCTGCTGATTACACTACTTATTCAGATGG----AAAACA
AGTCGCATGTAATGCAATGTAATGTAATGGTGGCAACCCGAACTTAGT----TTCATGTTGTCTTCCTCTCTGGAAAGTC
GCTATTCCATTTGTTTGTGCCGATCGAAGAAGCAAGGAAATAACTAGTAAAAATTGCCCCCTGCAGCAACGAGCATTTGA
TATGTCCGTTGTTGTCCATCCCATTCCATTGTCGGTGCCCACCCAGCCGCCGGCGACGGCGAGAGAAAAACAAATTAATG
GCTCACTCAGTTTACTAAGCCGGTGCACTAGGAGTAAGA---CTAGGACTAGGAA---------CGGACCGGCGTGATCG
GTGCGTACGACGAGCGGCATATGTGAACG-------------------------TTCTTTCTTTCTTTCTTGTTGCATTC
ATCAACAAGAACGACGAGTCATTTTCCCCTCTCTCTCCCTCTCCTCTCTCTCTCTCTCTCTATAGAGGGTCGGGGCGGGT
CGGGGCGGGTCGGGGCCGGGCGGGCG----TGG------------TCTCGGGGGATTCCGTTGGACTGTTGCGCGCATGG
CCTGGTGGTGGTGGTGGTGGTGACCGTGGCGGGGACGGATGGATGG--------------------ACCGCGCCTCATCC
ATCCTCAC-----CACGCACGCCTTTGCAAGCCAACGAAACTGCTGTTGCAACAGCATCTCGTTGCTTCTTCTCTTCTTA
CTACTCCGTTACCACTTGCT----ACGTCACTCGCTCGC-----TTTCTGTAATTGCTGCTACCTGCA-ACTGCCTGCCT
GCTCGCCTCATCACCGGCGACAATCCTATCTTAATTATGGCCTCTGCAACTGCAA-----------CCAACCCACACGGT
CAATGCTAAAACCAAAACTTCATATCTCAACTGACCAAGAAACCGTGCAGTGAGCAATCACTGCAATGTGAGTTTCTCGG
CAGTTTTCACCACCCACAGTGCCGGTTCTGCCCATGTTTGAC
>SNPs
S---------------------------------S-S-S----------------S-------------S----S-S---
-------------------S--------------------------------------------S--------------S
-----S-------S-----S----S-S---------S---SSSSSSS---------S---------------------SS
SS-------------------S------------------------S---------------------------------
---------S----------------------------------------SSSS--------------------------
-----------------------------S-----S-----------------------------------------S--
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
------S--------S-----SSSSSSSSSSSSSSSS--S----S-------------------SSSSSS----------
SS-S---------------------------------------------------------------------------S
--------------------------------------------SS----------------------------------
--------------------------------------------------------------------------------
-------S------------S--S---------------SSSS-SSS---------------------------------
-----------------S-----------------------------SSSSSS---------------------------
--------------------------S-----------------------------------------------------
---S----------------------------------------------------------------------------
------------------------SS-SS---------------------------------------------------
----------------------------------SSS-------------------------------------------
------------------------------------------------------S----S------------S--S----
----------------------------------------------------------S-----S--------------S
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------S------------S----
--------------------------SS-----------------S----------------------------------
----------------S---------------------------------------------------------------
-----------------------------------------------------------------S--------------
----------------------------------------------------------S---------------------
-------------------------------------------SSSSSS-------------------------------
-----------S--------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
-------------------------------------S--S--S------------------------------------
----------------------------S-------------------------------------S-------------
------------------------------------------------------------------------------S-
----------S---S---------------------------------SSSS----------------------------
--------------------------------------------S-SS--SSSS--------------------------
-----------------S--------------------------------S-----------------------------
---------------------------------------SSS-----------------------S--------------
----------------------------------------SSSSSSSS--------------------------------
-------------------------------------------------------------SS-----------S-----
-----------------------S--------------------------------------------------------
-SS-SS----------------S----------------------------S----------------------------
--------SSSSS-------------------------------------------------------------------
--------------------SSSS--------------------------------------------------------
-------------------------S----------------------------------------------S-------
--------------------------------------------------S---------------------------SS
------------------------------------------
>forward_478
--------------------------------------------------------------------------------
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----------------------------------------------------------GTCAAGGTGGCAAGGGACAA--
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>reverse_2365
--------------------------------------------------------------------------------
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--------------------------------------------ATGGACATGGACATGGCCAG----------------
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>forward_1665
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---------------------------------------------GGTTGTGCCTGATTCGTTCG---------------
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>reverse_3162
--------------------------------------------------------------------------------
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-----------------------------------------ACTAGGACTAGGAGCGGACC-------------------
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