>input_sequence_45827
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--------------------------------------------------------------TGATAAAAAGGCTACCTT
---CGTCTACTTGTAGCTATAGTACGGGAACGTACCACTCGTAGTACAGCAGGACCAGAGTGTGCCATCGATCATGGCGT
TGGCGGTCGTGGGGGATGCGGCCGCGGTAACACAGCTCATCGGGCAGGCGATCGGGCTCGTCGCCATGATCATCCGGGCG
GTGAAGACGGCCCACCAGAACAGGCTCGAGTGTCAGCACCTCGCTTGCAGTGTGTCCACGGTCGACGGGGTGCTGTCTAA
CCTGCCGCGGGACCAGGAGATGGCGCCGCCGCTCAAGGTGCTGAACAACACGCTTGAGGAGGCGCACCGCATGGTCATCG
CCTGCCAGAACCGGGGCGCCGTCAGCCAGTTCTTCGGATCCCGCCGCCACGCCGATTGTTTCAATCAAGTCAACAACAGG
ATTACGTCCGATATCGTCATCCTCAACCTCAGCCTAAACAGCTACATGGCCCGGCAACACTTCAACCAAGTCCTTCATCC
CAATCACATCGGCACACCGACTGCCACAATAGCCATGG---CGCCGTGGCCAGGCTTCAGCTCTGGCTCCCTGCAGACTC
AACTGGTGGTGGTGTCGCAGC---CGCAGGTAAGCTCGATCTCCTCCGATAACCCCAGGGCGCTCACGTGGTCGGAAATT
GCAGCGGCGACCAGCTTTGCCGTCGAGCTCGGCCGAGGCAACTCGGGGAGGGTATACAAGGGCCGTCTCCAGTTCCAGTT
CCACTTCCACCACGGCACGGAGGTGGCCGTGAAGGTGCTGGAAAAGCACAGGCGGCAGGGCATGGAGGACGCGTTCATGG
CGGAGAGCAACATCCTTTCCG------GCCTCCGGCACGACCACATCGTCCGCGTCCTCGGCTGGTGCGCGGAGCAGGAG
TACCGCATGCTGGTCTACGAGCATATGGGCAACGGCACGTTTAGAGACCACCTGCAGCATTTGGGCGGTGGCCCTAGCTC
GTCGCCCGTGACGA---CGTCCTGGGAGAAGCGCGTGGAGGTGCTGCTGGGCGTGGCCCGGGCCATCCACTACCTGCACC
GCGGCGCGGATCCGCTGGTCATCCATCGCAACGTCAGCTCGTCCAACATCCTCCTTGA---CGCCAACTGGACACCGCGC
CTGTCCGGCTTCGGCTCAGCGGTGTTTCAAGCGGCGGGTGTGGAGGAGCACGGCGGCCAGCTCGTGGAGGAGGTCGTCGG
CACGCCCGGGTACATAGACCCGGAGTACAGCGGCACGCACCGCGTGAGCACGGCGAGCGATGTGTACAGCTTCGGGGTGG
TGGTGCTGGAGGCGCTGACGGGGAGGCCGCCGGACATCTACGGCGTCACGCTCGGCCTCCTCGTGGACTCCGTGCTCCCG
AGCGTACACAACGGAAAGCTGCGGGATGTGCTGGATGGCCACCCGGCGCTGCAGCCGACGTCACGTCAGCTGGAGGCGCT
GGATCTCGTGGCATACACGGCGAGCCGCTGCCTGTGCCCGCGCGGGCAGAACCGGCGCCTGGCCATGTCTGATGTCGTGG
CCAACCTCCACAGGGCGCTCCAGATCATACGCAGCAATTA----------------GTGAGACTACAAGAGAATGTCTCC
GTATCTTTTAAATACCCATTTAATTCTCCGCGACAGTACCGAACGTTTTCTTTCACCTCCCATCGATTTTCTGAAGAATG
AAAA----------------------------------------------------------------------------
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----------------------------
>chr3D_1_TraesCS3D01G002100
GCCCAACCTTTGCAGCGCCATGCCGCCGGGATCCGCCGTCGGCCTTGCGGTAAATGTAACACCGCTCCTCCTCTTGTCCC
GTCCAACTAGCACTTCTCCAAAACGATGCCCCCAGGAGGGACAACGGCATCGAAGGTCCCATCATCGTCCAATCATGAGT
GGGGTGCCACTACCTGCAACAACGATGCCTCGAGAACGGAACTGCCACCCATCTACACGTAGCCGCCACCCTCGCTGAAT
GGAGCACCACCACCGCAACACCCAACCTCAGGTCACCGCCGGCCATGGAGGCTTCGATCGCCGCCGCGTAGCAGGGGCGC
TACCCTGACTGCCGCATTCCGCGGCGACCACCCACCCTGGATCTATGGGCCAGGGCCCGCCCCCACTCCGACATTTGCCG
ACGTAGCGGCAGGATGCATACATCCATTTTAGTATGAGTACCATTATTTATAAGTATCAAGATATTTTTTGATGATTGGT
CCCACTCCACACGAAGTTTGATCTTCAATAAATGGGGAAAAACCCCTGTGTATCACTTGTCAATTTTAGG-ATTGAACTC
GGGTTGTTAGACTGCACAACCACATGCGCAACCACTGAGCGAAGGCTCTCTCTGCATATGCATATATGCTA---------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CATGTTC
CCAGTATGTT-TATGCGACTTGTCATGCCAGTAATCTTGTGATGATGCTAATCTCGATTAGTCTTAAACAAAATAAAAAA
TATTTAAAAGCTGGATCAGAAGTTCTTTGCTTATAGTGAACTA--------ATATAACGATTTGATCGGAGAGAAAAAAA
GAAGAAGA---AGAAACATTCAAACCGTGTGCCAAACCGTTGAAACCGCTCTGTGGTTGTCGTTTTATA----TGAAGTC
TCGCAACGTCGTGCTTATGGGTGGGTCGAGAGGGGATGGATCGTAGGATGAGCTTGACTTTGACAACTCCTCGGGTCATC
GCCAACACGCTG---CAGAGAGGGAGCGACAGACCATTTCCACAAACACCTCGAGGGCGCGCTGATAAAAAGGCTACCTT
---CGTCTACTTGTAGCTATAGTACGGGAACGTACCACTCGTAGTACAGCAGGACCAGAGTGTGCCATCGATCATGGCGT
TGGCGGTCGTGGGGGATGCGGCCGCGGTAACACAGCTCATCGGGCAGGCGATCGGGCTCGTCGCCATGATCATCCGGGCG
GTGAAGACGGCCCACCAGAACAGGCTCGAGTGTCAGCACCTCGCTTGCAGTGTGTCCACGGTCGACGGGGTGCTGTCTAA
CCTGCCGCGGGACCAGGAGATGGCGCCGCCGCTCAAGGTGCTGAACAACACGCTTGAGGAGGCGCACCGCATGGTCATCG
CCTGCCAGAACCGGGGCGCCGTCAGCCAGTTCTTCGGATCCCGCCGCCACGCCGATTGTTTCAATCAAGTCAACAACAGG
ATTACGTCCGATATCGTCATCCTCAACCTCAGCCTAAACAGCTACATGGCCCGGCAACACTTCAACCAAGTCCTTCATCC
CAATCACATCGGCACACCGACTGCCACAATAGCCATGG---CGCCGTGGCCAGGCTTCAGCTCTGGCTCCCTGCAGACTC
AACTGGTGGTGGTGTCGCAGC---CGCAGGTAAGCTCGATCTCCTCCGATAACCCCAGGGCGCTCACGTGGTCGGAAATT
GCAGCGGCGACCAGCTTTGCCGTCGAGCTCGGCCGAGGCAACTCGGGGAGGGTATACAAGGGCCGTCTCCAGTTCCAGTT
CCACTTCCACCACGGCACGGAGGTGGCCGTGAAGGTGCTGGAAAAGCACAGGCGGCAGGGCATGGAGGACGCGTTCATGG
CGGAGAGCAACATCCTTTCCG------GCCTCCGGCACGACCACATCGTCCGCGTCCTCGGCTGGTGCGCGGAGCAGGAG
TACCGCATGCTGGTCTACGAGCATATGGGCAACGGCACGTTTAGAGACCACCTGCAGCATTTGGGCGGTGGCCCTAGCTC
GTCGCCCGTGACGA---CGTCCTGGGAGAAGCGCGTGGAGGTGCTGCTGGGCGTGGCCCGGGCCATCCACTACCTGCACC
GCGGCGCGGATCCGCTGGTCATCCATCGCAACGTCAGCTCGTCCAACATCCTCCTTGA---CGCCAACTGGACACCGCGC
CTGTCCGGCTTCGGCTCAGCGGTGTTTCAAGCGGCGGGTGTGGAGGAGCACGGCGGCCAGCTCGTGGAGGAGGTCGTCGG
CACGCCCGGGTACATAGACCCGGAGTACAGCGGCACGCACCGCGTGAGCACGGCGAGCGATGTGTACAGCTTCGGGGTGG
TGGTGCTGGAGGCGCTGACGGGGAGGCCGCCGGACATCTACGGCGTCACGCTCGGCCTCCTCGTGGACTCCGTGCTCCCG
AGCGTACACAACGGAAAGCTGCGGGATGTGCTGGATGGCCACCCGGCGCTGCAGCCGACGTCACGTCAGCTGGAGGCGCT
GGATCTCGTGGCATACACGGCGAGCCGCTGCCTGTGCCCGCGCGGGCAGAACCGGCGCCTGGCCATGTCTGATGTCGTGG
CCAACCTCCACAGGGCGCTCCAGATCATACGCAGCAATTA----------------GTGAGACTACAAGAGAATGTCTCC
GTATCTTTTAAATACCCATTTAATTCTCCGCGACAGTACCGAACGTTTTCTTTCACCTCCCATCGATTTTCTGAAGAATG
-AAAAA-----TAATGGTTGAACGGTTAATGATTTCATTGATGATTAGATTTG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TATACATGTTGGA
GAGGCGTTGGTTCCATAGAGAGACAGATGTGTTGCATCCAC-CAGGGACGTGGCCGTTGGCAATGAACACAAACAACTCA
CGGGTATTACTTAATATAAGGAAGCAATTACCGGTTAGATTCACCCTAATCTACTTATAACACACCTCTTGTACAATGCG
TGCGTTTTCTAGAATAATCCATCATAGAAAGCCTCTTGCATATTCACCACTCATCTTTAAAAAATGCCTTTCTGTAATCT
TAAAAGTCTCCTCCAAAAATCATGTGG-AAAAA-TATGAGAAAAATAGTGTAGATATGTTGCTAACACATTTTTAAACCC
ACTGAAAAAAATCATAGAAAAATGATGCGACATGACACTACCGCGTGCAT------------------------------
--CACACAAGGTGCATAAAAGTGATTAACATCACATACAATTCATTATATTTATGTGATAATGGTATTGTCGTGTCCCCT
TCCTCCAACACCTTTGGACGAGA--ACACCTTCTTCACCTACAACATAACATCAAGGTCCACCAATGCATGATAATCATC
TCCAT-GTCTTTGCAAT---TACAACTATAACTATCTCTATAGCTAATAAAATAAATGCATTGCATGAAATTTGACATGC
AGCTTGAATAAATGACAATTAAATGGCTCTTTCCATCATGTCATACCATAAAACACATGACATGTAAA-TAATAATTGCA
ACATATAGCATCGCATACAATCTCATTCCCATGACGAAGATCACAACACATCACATGTACGTCCTGCAAAAACAAGTTAA
ATGCCTCTAATCTTTTTTGCAATTTTATCGTGGCTGCTAGGGTTGACGTTGCAAACCGTTAGCTACCCGTGTTATCATCA
AGCATGATTATTCAACTTGCTAGTTTAACTTT--TTGTGTCTAAAACACGAGACATAATGAAAAATCTCAAGCCCCATAC
CAAACTTCGTTAAACGTGTGACCCTAGG
>chrUn_1
GCCGAACCTCTGCAGCGCCATGCCGTCGGGATCTGCCGTCGACCATGCGGTAGATGTAACACCGCTCCTCCTCTTGTCCC
GTCCAACTAGCACTTCTCCAAAACGATGCCCCCAGGAGGGACAACGACATCGAAGGTCCCATCATCGTCCAATCACGAGT
GGGTTGCCACTACCTGCAATAACGATGCCTCGAGAAGGGAACTGCCACCCATCTGCACGTAGCCCCCACCCTCACTGAAT
GGAGCGCCACCACCGCAACACCCAACCTCAGGTCACCGCCGGCCATGGAGGCTTCGATCGCCGCCGTGCAGCAGGGGCGC
CACCCTGACTGCCGCATTCCGCGGCGACCACCCACCCTGGATCTATGGGCCAGGGCCCGCCCCCACTCCGATCCTTGCCG
ACGTAGCGGCGGGATGCATACATCCATTTTAATATGAGTACCATTATTTATAAGTATCAAAATATTTTTTGATGATTGGT
TCCACTCCACACCAAGTTTGATCCATCAGGAAATGGAGGAAACCCCTATGTATCACTTGTCAATTTTAGAAATTGAACTC
GGGTCGTTAAGCTGCACAACCGCATGCCCAATCATCGAGCCAAGGCTCTGTATGCATATGCCTATATGCTACTCCCTCCG
TTCCTAAATACTTGTCTTTCTAGGCATTTCAACAAGTGACTACATACGAAGCAAAATGAGTGAATCTACACTCTAAAATA
TGTCTACATACATCCGTATGTACTAGTCATTTGAAATGTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTACATGTTT
CCAGTATGTTGTATGTGACTTGTCATGCCAGTAATCTCGTGATGATGCTAATCTCGATTGATCTTAAACAAAATAAAAAA
TATTTACAAACTGGATCAGAAGTTCTTTGCTTATAACGAACTAATATAAGTATATAACGATTTGCTAGGAGAGAAAAAAA
GAAGAAGAAAAAGAAACATTCAAACCGTGGGCCAAACCGTTGAAACCGCTCGGTGGTTGTGGTTTTATATGAATGAAGTC
TCGCAACGTCGTGCTTATTGGTGGGTCGAGAGGGGATGGATCGTAGGATGAACTTGACTTTGACAACTCCTCGGGTCATC
GCCGACACGCTGCTGCAGAGAGGGAGCGACGGACCATTTCCACAAACACCTCGAGGGCTCGCTGATAAAAAGGCTACCTC
CTCCGTCTACTTGTAGCTATAGTACGGGAACGTACTACTCGTAGTACTCTAGGACTA-AGTGTTTCATCGATCATGGCGT
TCGCGGTCGTGGGGGATGCGGCCGCGGTAACACAGCTCATCGGGCAGGCGATCGGGCTCGTCGCCATGATCATCCGGGCG
GTGGAGACGGCACACCAGAACAGGCTCGAGTGTGAGCGCCTCGCTTGCCGTGTGTCCACGGTCGACGGCGTGCTGTCTGA
CCTGCCGCGGGCCCAGGAGATGGCGCCGCCGCTCAAGGTGCTGAACAACACGCTTGAGGAGGCGCACCGCATGGTCATCG
CATGCCAGAACCGGGGCGCCGCCAGCCACTTCTTCGGATCCCGCCGCCACGCCGATTGCTTCAATCAAGTCAACAACAGG
ATTACGTCCGACATCGTCATCCTCAACCTCAGCCTAAACAGCTTCATGGCCCGGCGACACTTCAACCACGTCCTTCATCC
CAATCACGTCGGCGTACCGACTGCGACAATAGCCATGGCGCCGCCGTGGCCAGGCTTCAGCTCTGGCTCCCTGCAGACTC
AGCTGGTGGTGGTGTCGCAGC---CGCAGGTAAGCTCGATCTCCTTCGATAACCCCAGGGCGCTCACGTGGTCGGAGATT
GCAGCGGCGACCAGCTTTGCCGTCGAGCTCGGCCGAGGCAACTCAGGAAGGGTATACAAGGGCCGTCTCCAATTCCAGTT
CCACTTCCACCACGGCACGGAGGTGGCCGTGAAGGTGCTGGAAAAGCACAGGCGGCAGGGTGTGGAGGACGCGTTCATGG
CGGAGAGCAACATCCTTTCCG------GCCTCCGGCACGACCACATCGTCCGCCTGCTCGGCTGGTGCGCGGAGCAGGAG
TACCGCATGCTGGTCTACGAGCATATGGGCAACGGCACGTTTAGAGACCACCTGCAGCACTTGGGCGGTGGCCCTAGCTC
GTCGCCCGTGACGA---CGTCCTGGGAGACGCGCGTGGAGGTGCTGTTGGGCGTGGCCCGGGCCATCGAGTACCTGCACC
GCGGCGCGGATCCGCTGGTCATCCATCGCAACGTCAGCTCGTCCAACGTCCTCCTTGA---CGCCAACTGGACACCGCGC
CTGTCCGGCTTCGGCTCAGCGGTGTTTCAGGCTGCGGGTGTGGAGGAGCACGGCGGCCAGCTCGTCGAGGAGGTCGTCGG
CACGCCCGGGTACATAGACCCGGAGTACAGTGGCACGCACTGCGTGAGCACGGGGAGCGATGTGTACAGCTTCGGGGTGG
TGGTGCTGGAGGCGCTGACGGGGAGGCCGCCGGACATCTACGGCGTCACGCTGGGCCTCCTCGTGGACTCCGCGCTCCCG
AGCGTACACAACGGAAAGCTGCGGGATGTGCTGGATGGCCACCCGGCGCTGCAGCCGACGCCGCGTCAGCTGGAGGCGCT
GGATCTCGTGGCATACACGGCGAGCCGCTGCCTGTGCCCGCGCGGGCAGAACCGGCGCCTGGCCATGTCTGATGTCGTGG
CCAACCTACACAGGGCGCTCCAGATCATACGCAGCAATTA----------------GTGAGACTACAAGAGAATGTCTCC
GTATCTTTTAAATATCCATTTAATTCTCAACGACAGTACCGAACGTTTT-TTTCACCTTCCATCGATTTTGTGAAGAATG
AAAAAA-----TAATGGTTGAACGGTTAATGATTTCATTGATATACATGTTTTTTTAGCATCAGTACAGACACAAGCGCT
CATATACACGCGCATACACTCACCCCTATGAACGCACACACGCACACCCTATCCTATGAGCACCTCCGAAAGACTGAGCC
ACGGAACGTCTCCTCTCACTGAAAGCGCATCGCCGAAAATCCTAAAATAGATCCAGGAATAATGCGAGCACCAGGATTCG
AACCCTCGTGGGTTGGGGATACCACTGTCCGCCTAACCATCTCAGCCACAGGTTGGTTCGCCATTGATATACATGTTGGA
GAGGCGTTGGTTCCATAGAGAGACAGATGTGTTGCATCCAC-CAGGGACGTGTCCGTTGGCAATGAACACAAACAACTCA
CGGGTATTACTTAATATAAGGAGGCAATTACCAGTTAGATTCACCCTAATCTACTTATAACACACCTCTTGTACAATGCG
TGCGTTTTCTTGAATAATCCATCATAGAAAGCCTCTTGCATATTCACCACTCATCTTAAAAAATG-CCTTTGTGTAATCT
TAAAAGTCTCCTCCAAAAATCATGTGG-AAAAAATATGAGAAAAAAAGTGTAGATATGTTGCTAACACATTTTTAAACCC
ACTGAAGAAAATCATAGAAAAATGATGCGACATGACATGGTATTGTCGTGTCCTCTTCATTATATTTATGTGATTAACAT
CACACACAAGGTGCATAAAAGTGATTAACATCACACACAATTCATTATATTTATGTGATATTGGTATTGTCGTGTCCTCT
TCCTCCAACACCTTTGGACGAGA--ACATCTTCTTCACCTACAACATAACATCAAGGTCCACCAATGCATGATAATCATC
TTCAT-GTCCTTGCAAT---TACAACTATAACTATCTCTATAGCTAATAAAATAAATGCATTGCATGAAATTTGACATGC
AGCTTGAATAAATGACAATTAAATGGCTCTTTCCATCATGCCATACCATAAAACACATGACATGTAAA-TAATAATTGCA
ACATATAGCATCTCATACAATCTCATTCCCATGACGAAGATCACAACACATCACATGTAAGTCCTGCAAAAACAAGTTAA
ATACCTCTAATGTTTTTTGCAATTTTATCATGACTGCTAGGGTTGTCATTGCAAACCGTTAGCTACCTGTGTTATCATCA
AGCATGACTATTCAACTTGCTAGTTTAACTTTCGTTGTGTCTAAAACACGAGACATAATGAAAAATCTCGAGCCCCATAC
CAAACTTCGTTAAACGTGTGACCCTAGG
>chr3A_1086
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----------------------------------------------------------------------ATCATGGCGT
TGGCGGGGGTGGGGGATGCGGCGGCGGTGACACAGCTCATCGGGCAGGCCATCGGGCTCGTCGCCATGATCATCCGGGCG
GTGGACACGGTACGCCAGAACAGGCTGGAGTGTGAGCACCTCGCCTGCCGCGTGTCCACGGTCGACGGGGTGCTGTCTAA
CCTGCCGCGGGACCAGGAGATGGCGCCGCCGCTCAAGGTGCTGAAAAACACGCTGGAGGAGGCGCACCGCATGGTCATCG
CCTGCCAGAACCGGGGCGCCGCCAGCCACTTCTTCGGATCCCGCCGCCACGCCGATTGCTTCAATCAAGTCAACAACAGG
ATTATCTCCGACATCGTCATCCTCAACCTCAGCCTAAACAGCTACATGGCTCGGCGACACTCCAACCAAGTCCTTCAACC
CAGTCACATCGGCGTACCGACTGCCACAATAGCCATGGCGCCG---TGGCCAGGCTCCAGCTCTGCCCCCCTGCAGAC--
-GCTGATGGTGGTGTCGCAGCAGTCGCAGGTAAGCTCGATCTCCAGCGATAACCCCAGGGCGCTCACGTGGGCGGAGATT
GCAGCCGCGACCAGCTTTTCCGTCGAGCTCGGCAGAGGCAGCTCGGGGAGGGTATACAAGGGCCGTCTCCAGTTCCAGTT
CCACTTCCACCACGGCACGGAGGTGGCCGTTAAGGTGCTGGAAAAGCACAGGCGGCAGGGCGTGGAGGACGCGTTCATGG
CGGAGAGCAACATCCTTTCCG------GCCTCCGGCACGACCACATCGTCCGCCTCGTCGGCTGGTGCGCGGAGCAGGAT
TACCGCATGCTGGTCTACGAGCATATGGGAAAAGGCACGCTTAGAGACCACCTTCAGCATTTCGGCGGTGGCCCTAGCTC
GTCGCCGGTGACGA---CGTCCTGGGAGACGCGCGTGGAGGTGCTGCTGGGCGTGGCGCGGGCCATCCACTACCTGCACT
GCGGCGCGGATCCGCTGGTCATCCATCGCAACGTCAGCTCGTCCAACATCCTCCTGGACGGCGCCAACTGGACGCCGCGC
CTGTCCGGCTTCGGCTCAGCGGTGTTTCAAGCGGCGGGTGTGGAGGAGCACGGCGGCCAGCTCGTCGAGGAGGTCGTCGG
CACGCCGGGTTACATAGAACCGGAGTACAGCGGCACGCACCGCGTGAGCGCGGCGAGCGATGTGTACAGCTTCGGGGTGG
TGGTGCTGGAGGCGCTGACGGGGAGGCCACCGGACATCTACGGCGTCACGCTCGGCCTCCTCGTCGACTCCGTGCTCCCG
AGCGTACAGGAGGGAAAGCTGCGGGAGGTGCTGGATGGCCACTCGGCGCTGCAGCCGACGCCGCGTCAGATGGAGGCGCT
GGATCTCGTGGCATACACGGCGAGCCGCTGCCTGTGCCCGCGCGGGCACAACCGG---CTGGCCATGTCTGATGTCGTGG
CCAACCTCCACAGGGCGCTCCAGACCATACGCAGCAATTAATTTGACTGAGAATTAGTGAGACTACA--AGAATGTCTCC
GTATCTTTTAAATATCCATTTAATTCTCCGCGA------------TTTC-TTTCACCTCCCATCGATTTTGTGAAGAATG
AAAAGTAGGAGTAATGGTTAAATGGTTAATGATTTCATTGATGATTGGCTTTG---------------------------
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-------------------------------------------------------------------TATACATATTGGA
GAGGCGTTGGTTACATAGAGAGGCAGATGTGTTGCATCCACGCAGGGACGTGTCCGTTGGCACTGAACACAAACAACTCA
CGGGC------------AAGCAAGCAATTACCGATTATATTAACCCTAATCTATTTCTAACACTCCTCTTGTACAATGCT
TA---TTTTTTAAATAATCCATCATAGAAAGCTTCTTGCATATTCACCACTTATCTTAAAAAAT--CCTTTGTGTAATCT
TTAAAGTCTTCTTCAAAAATCATGTGGAAAAAAATATGAGGAGAATAGTATAAATACGTTGCTAAAACTTCTTTGAACCC
ACTGGAAAAAATAATAAGAAAATGACGCGACATGATACTACCA--TGCAT------------------------------
--CAAAGAGGGTGCATAAAAATGATTAACATCAGATACAATTCATTATATTTATGTGATAT-GGTATTGTCGTGTCCTCT
TGCTCCAACACCTTTGACCGAGAACACCTCTTCTTCGCCAACAACATAACATCAAGGTCCACCAATGCATGATAATCATC
TTCAACGTCTTTGCAATTAGTACAACTATAACTATCTCTATAGCTACTAAAATGAATGCATTACATGAAATTTGACATGC
AGGTTGAAGAAATGACAATTAAATGGCTCTTGCCATCATGC--TACCATAAAACACATGCCATGTAAAATAATAATTGCA
ACATATCGCATCTCATACAAACCCATTCCCATGAC---------------------------------------------
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>chr3D_1735
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-----TCCACGACGGCCCGGAGGTGGCCGTTAAGGTGCTGGACAAGCACAGGCCGCAT---------GAGACGTTCGTGC
CGGAGCTCGTGATCACCTTCC------GCCTCCGCCACGACCACATCGTGCGCCTCGTCGGCTGGTGCGAGGAGGAGGAT
GACCGCATGTTCGTCTACGAGCATATCAGCAACGTTACGCTCAGAGACCACCTGCAGCGTGTTC------------GCTC
GTCGCCGGTGACGGCGGCGCCCTGGAGGACTCGCGTCGCGGCGCTGCTGGGCGCGTCCCGGGCCATCCAGTACCTGCACT
GCGGCGCGCAGCCGGTGGTCATCCACCGCAACGTCAGCTCGTCCAACATCCTCCTGGA---CGCGAACTGGACGCCGCGC
CTGTCCGGCTTCGGCGCGGCGGTGTACCAAGCGGCAGGC---GAGGAGCGCGGCGGCCAGCTCGTCGAGGAGGTCGTCGG
CACGCACGGGTACATCGACCCGGAGTACAGCCGCACGAAGCGCGTGAGCACGACCAGCGACGTGTACAGCTTCGGGGTGG
TGATGCTAGAGGCGCTGATGGGCGAGG-----------------------------------------------------
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>chr3A_1735
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-----TCCACGACGGCCCGGAGGTGGCCGTTAAGGTGCTGGACAAGCACAGGCCGCAT---------GACACGTTCGTGC
CGGAGCTCGTGATCACCTTCCGCCTCCGCCTCCGCCACGACCACATCGTGCGCCTCGGCGGCTGGTGCGAGGAGGAGGAC
GACCGCATGTTCGTCTACGAGCATATGAGCAACGGCACGCTTAGAGACCGCCTGCAGCGCGTGC------------GCTC
GTCGCTGGTGACGGCGGCGCCCTGGAGGACCCGCGTCGCGGCGCTGTTGGGCGCGTCCCGGGCCATCCAGTACTTGCACT
GCAGTGCGCAGCCGGTGGTCATCCACCGCAACGTCAGCTCGTCCAGCATCCACCTGGA---CATGAACTGGACACCGCGC
CTGTCCGGCTTCGGCGCAGCGCTGTATCAAGCGGCGGGC---GAGGAGCATGGCGGCCAGCTCGTCGAGGAGGTCGTCGG
CACGCCCGGGTACGTCGACCCGGAGTACACCCGCACGAAGCGTGTGAGCACGGTGAACGACGTGTACAGCTTCGGGATGG
TGATGCTAGAAGCGCTGACGGGTGAGG-----------------------------------------------------
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>chrUn_1953
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---------------------------------------------------------------------GGCCCTAGCTC
GTCGCCAGTGAGTG---CGTCCTGGAGGACCCGCCTCGAGGTGCTGCTGGGCGCGGCCCGGGCCATCGAGTACTTGCACC
GTGGTGCGGATCCGCTGGTCATCCACCGCAATGTCAGCTCCTCCAACATCCTCCTGGA---CGCAAGCTGGACGCCGCGC
CTGTCCGGCTTCGGCTCAGCGGTGTTTCAAGAGGCCGGC---AGGGAGCACGGCGGCCAGCCCGTCGGGGAGGTCATGGG
CACGTTCGGGTACATCGACCCGGCGTACAGCTACACGACGCACATCAGTCCGGCGAGTGACGTGTACAGCTTCGGGGTGG
TGATGCTGGAGGCGCTGACGGGGAGGCCGCCGGTCATCTACGGCGTGAC------CCTCCTCGTGGACTCCACGCTCCCC
AACTTACAGAGTGGAAAGCTGCGGGATGTGCTGGATCGCCACCCGGCGCTGCAGCCAACGCCACGTCAGCTAGAGGCACT
GGATCTCGTGGCACAAACGGCGATCCGCTGCCTGTGCCCGCGCGGGCACAATCGGC---TGGCCATGTCGGAGGTCGTGG
CCAATCTCCAGAGGGCACTCGAGATCATACGCAACAAT------------------------------------------
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>SNPs
---S-----S---------------S-------S-------S--S-------S---------------------------
----------------------------------------------S----------------------------S----
---S---------------S----------------S-----------------S---------S--------S------
-----S------------------------------------------------------------S-S-----------
S----------------------------------------------------------------------SSS------
----------S--------------------S----------------------------S-------------------
S-----------S----------SSSS-SS--SS--SSS--------S---------------------S----------
----S----SS----------S-----S---S--SS----S--------S-S---------S------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
---------------S---------------------S---------------------SS-------------------
------S--S-------------------------SS---------------------------S-S-------------
-----------------------------S---------------------S--------S-------------------
------------------S--------------------------------S----------------------------
---S--------------------------S---------------------------S--------------------S
-----------------------------------S-----------SSS-----S-S-----SS---------------
--------------------------------------------------------------------------------
---S-------S---------------------S--------------S-------------------------------
--------------------------------------------------------------------------------
---------------------S------S-----------------------------S---------------------
-----------S-------------------------------------------S------------------------
-------------SS-----------------------------------------------------------------
-S-------------------------------------------S------------------------------S---
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
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------------------------------------------------------------S-------------------
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--------------S----------------------------------S--------------------S---------
------------------------------------------------S-------------------------------
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----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
----------S----------------------------------------------S-----SSS-----S--------
--------------------------------------------------------------------------------
------------------------------------------SS------------------------------------
------------------------------------------------------------S----------------S--
----------------------------S---------------------------------------------------
-S------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
------------S----------------------------------------------S--------------------
--S--------S-----------------S--S------------S-S-------------------S------------
-------S-------------------------------------------------------------S----------
----------------------------
>forward_1059
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-------------------------------------------------------------------------------C
TCGCAACGTCGTGCTTATG-------------------------------------------------------------
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>reverse_1982
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-------------------------------------------------------------ATGGAGGACGCGTTCATGG
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>forward_1394
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--------------CCAGAACAGGCTCGAGTGTC----------------------------------------------
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----------------------------
>reverse_3678
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CCT
TCCTCCAACACCTTTGGA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
