>input_sequence_45813
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-----------------------------------------------------------------------------ATT
TAAATGACATCCTCAAATGCCATGTCAAATTATCAAATCTGCCTAACAAACTACACTCTCACTCTGAGAAAAAC------
--------------------------TAGTACACCAAAAATCTTGACGTCGGCGGCGGCAATGAGCCTCCTGGAAGCCCG
CCTCTCGTCCGTCGCCAAGAACTGCACCCGCCGGCAGCTCAACCAGATCCATGGCCTCCTCCTCACCTCCTCCCTCCACC
GCCTCCCGGGCCTGCCCGCCCTCCTCGTCCGCCGCGCCGCCGACGTCGGCGACATGGCCCACGCCGACCTGCTCTTCTCC
TCGTTCCTCCGGTCGGGGGCGCCGCCTGACGCCGCCCTCTACAACGCCATGATCCGCGGGCGCTCCTACCACGGCCCCCA
CGAGCGCGCGCTGGAGCTGTTCGACGAGATGCCGCGCCGGGGCCTGGTGGCTGACGGATTCACCTACCCGTACGTCCTGG
ACGCGTGCGCGCGGCTCCGGGCGCGGCGGCGCGGCGAGGGCGTCCACGGCCGGGTCCTGAAGGAGGGGCTCGACCACGTG
CCGGCCGTCGGGAGCTCGCTGCTCGCATTCTACGTCTCCGTC---GGCGGCGGCTCGCTGGGCGACGCGCGGAGGCTGTT
CGACGGATTGCGCGTCAGGTCCGTGGGCCTGTCGAACCACATGATAGCGGAGCACGCCAAGGCCGGGGACGTCGGCTCCG
CGCGAGAGGTCTTCGACGCGATGCCAGACAGGGACGTCGTGTCGTGGAACACAATGCTCGCCGTGCACGTCAGGTCGGGC
GACATCGCGGCAGCGAAGGAGCTCTTCGCGGAGATGCCGGAGAGGGACGTGGTGTCTTGGACAACGATGCTGAGGGCGCT
GTCCGTCGCCGGCGACTTCGCCGGCATGAGGAGCCTGTTCAGCCGGATGCCGGAGAGGAACCTGGTGTCCTGGAACTGCG
TGCTCTCGAGCTACACCAGGCACGGCAGGTTCTCGCAGGCGCTCCGCCTCTTCCCATGGATGCTGCTCGAAGGCCACACG
CCCAACAGCTTCACCGTCGTGTCGCTCCTCTCGGCCTGCGAGCACCTCCGGAAGCTCCGGATGGGCCGGTGGGTGCACGC
CAACCTGGTGACGCCGGCGCTGCAGGCCCACGCCGCCGTCGGGACGGCGCTGGTGGAGATGTACGCCATGTGCTGCGACG
TAGCCCGCGCGCTCGTCGTCTTCTTCAAGATGCGCGGCAAGGACGTGTTCGCCTGGAACGTGATGATCAGGGGCCTGGCG
GTGCACGGGCGGGCCGGCGACGCGCTCAGGCTGTTCGACCTCATGAAGCGGCAGGGCTTCCGGCCCGACCGCTTCACCTT
CATGGGCGTGCTGCTGGCGTGCAGCCACGGGGGGCTCGTCGGCGAAGGGCGCAGGGCGTTCGACGCGATGCAGAGGGACC
ACGGCGTCCGCCCCTCGCCGGAGCACTACGGCTGCCTGGTCGACCTGCTCTGCCGTGGCGGCGATGTCGACGGGGCGGTG
AGCGTGGTGCGCGCGATGCCTTGCCGGCCGGACCGGGGGGTCTGGAGGGCGCTGCTCGGCGGGTGCGGCGTTCGGGCTGG
CCTCGGGTCGGCCGAGGATGCGGCGACGGCGACGG------GTGGCTGGTCGGTGGACGGCGAGCGTGCGCCGTTGAGCG
ATCTCTTCAAGATAAGCAAGTAG---------------------------------------------------------
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---------------------------------------------------------------
>chr1A_1_TraesCS1A01G355000
TGTGAAACGTTATTACATCCAATATGTGACCTTGGATGTAATAACATCTTGCATTATGAGGCGGAGGGAGTATTATACTA
TTATTATCCACAATAAATAAATAAACTATGATTTTGAAAATATATATTCCTTTAACATTGAATCTTTGATAGAAACGTTT
TCACCTTCTTGGAAATTTATAGGGCTTTTTCATGATGTAACCAAACAACCTTTTTTTTG-TGTAAAAATTTCGATCTATT
CATTTTCAATCATGATAGTACAACAAACACTAAAAATAATAAAAA-CTACGTCCAGATCCATAGACCATCTAGCGACGAC
TACAAGCACTGAAGC---------------CGCTATTATCGCCCCT-CCCTTGACGGAGCCGGGCAAAATTTGTTGTAGT
AT--AGTCGGAAAGTCGTCGTGCTAAGGTCACATAGGACCAGCGCAATAGAACAGCAA-TCGTCGC-CGATGAAGAGTAG
CGTAGATCAG-AAGAATCCAACCTGAAGACACAAGAACAAAGTTGAACGACGAACAGATCCGAGCAAATCCATCAAAGAC
GGATATGCCGGAGACACAACCCCACACGTCCACCGACGATGCTAGAAGCACCACCGAAAACGGGGCCTAAATGTGAAGAA
CCTTATTCCATTTTCAGGAAGCCGCCGCCGTCTCATCTTACTCAACAGGATACAAACCCTAATAAAACTCGAAGAAA--T
ATCT-AAAAACGAAGCCCTTCCACCGTCAAGGGCCGAGATTCACTCCGCTCCCATGGCCCTAAGGCCACCGAAGATGA-G
CGGACCGACGGCGGCGCCGGCGGGAGGCCAAACAACCTTTGATCCATGACATGGCATGGCTCCACAATATCAGTCAGTTC
AGAATACGCTT----------GTCAGTTCAGAATACGCTTGTCAAATGTATTCTCATGGTTTTCAGAAAATATGATCATT
TGCGAAAACATATAACGTGAGTCATGATATCTTCTTAGAATGGCCCCAAACAATACAGATTTTCGTGGAAATTGAAAATT
TAAATGACATCCTCAAATGCCATGTCAAATTATCAAATCTGCCTAACAAACTACACTCTCACTCTGAGAAAAAC------
--------------------------TAGTACACCAAAAATCTTGACGTCGGCGGCGGCAATGAGCCTCCTGGAAGCCCG
CCTCTCGTCCGTCGCCAAGAACTGCACCCGCCGGCAGCTCAACCAGATCCATGGCCTCCTCCTCACCTCCTCCCTCCACC
GCCTCCCGGGCCTGCCCGCCCTCCTCGTCCGCCGCGCCGCCGACGTCGGCGACATGGCCCACGCCGACCTGCTCTTCTCC
TCGTTCCTCCGGTCGGGGGCGCCGCCTGACGCCGCCCTCTACAACGCCATGATCCGCGGGCGCTCCTACCACGGCCCCCA
CGAGCGCGCGCTGGAGCTGTTCGACGAGATGCCGCGCCGGGGCCTGGTGGCTGACGGATTCACCTACCCGTACGTCCTGG
ACGCGTGCGCGCGGCTCCGGGCGCGGCGGCGCGGCGAGGGCGTCCACGGCCGGGTCCTGAAGGAGGGGCTCGACCACGTG
CCGGCCGTCGGGAGCTCGCTGCTCGCATTCTACGTCTCCGTC---GGCGGCGGCTCGCTGGGCGACGCGCGGAGGCTGTT
CGACGGATTGCGCGTCAGGTCCGTGGGCCTGTCGAACCACATGATAGCGGAGCACGCCAAGGCCGGGGACGTCGGCTCCG
CGCGAGAGGTCTTCGACGCGATGCCAGACAGGGACGTCGTGTCGTGGAACACAATGCTCGCCGTGCACGTCAGGTCGGGC
GACATCGCGGCAGCGAAGGAGCTCTTCGCGGAGATGCCGGAGAGGGACGTGGTGTCTTGGACAACGATGCTGAGGGCGCT
GTCCGTCGCCGGCGACTTCGCCGGCATGAGGAGCCTGTTCAGCCGGATGCCGGAGAGGAACCTGGTGTCCTGGAACTGCG
TGCTCTCGAGCTACACCAGGCACGGCAGGTTCTCGCAGGCGCTCCGCCTCTTCCCATGGATGCTGCTCGAAGGCCACACG
CCCAACAGCTTCACCGTCGTGTCGCTCCTCTCGGCCTGCGAGCACCTCCGGAAGCTCCGGATGGGCCGGTGGGTGCACGC
CAACCTGGTGACGCCGGCGCTGCAGGCCCACGCCGCCGTCGGGACGGCGCTGGTGGAGATGTACGCCATGTGCTGCGACG
TAGCCCGCGCGCTCGTCGTCTTCTTCAAGATGCGCGGCAAGGACGTGTTCGCCTGGAACGTGATGATCAGGGGCCTGGCG
GTGCACGGGCGGGCCGGCGACGCGCTCAGGCTGTTCGACCTCATGAAGCGGCAGGGCTTCCGGCCCGACCGCTTCACCTT
CATGGGCGTGCTGCTGGCGTGCAGCCACGGGGGGCTCGTCGGCGAAGGGCGCAGGGCGTTCGACGCGATGCAGAGGGACC
ACGGCGTCCGCCCCTCGCCGGAGCACTACGGCTGCCTGGTCGACCTGCTCTGCCGTGGCGGCGATGTCGACGGGGCGGTG
AGCGTGGTGCGCGCGATGCCTTGCCGGCCGGACCGGGGGGTCTGGAGGGCGCTGCTCGGCGGGTGCGGCGTTCGGGCTGG
CCTCGGGTCGGCCGAGGATGCGGCGACGGCGACGG------GTGGCTGGTCGGTGGACGGCGAGCGTGCGCCGTTGAGCG
ATCTCTTCAAGATAAGCAAGTAGATATGCGAACCAGTAATTCAGACGGCGCTCACTGACTTGTCCGAGCTGGGTGAAGCC
TCCTCTATATAACTTTGGTCGAATCCCTCGTTCATCGTCACCTCGATAGCATTGTTCCTCGCCCTCACCTCGCGTGTTGC
CATGGCTGTCGACGGCGAGCAGCGCGCCACCGCGGTAAAGAACCCCACCATTGCCTACCGGGTCGCCTCTATATGCGACA
TGATCGACGAGCATGACGCCACCAAGACGCCTATGAGCGCTAGCCGAGTTGCTGCCATGTACTCCATTGAAAGGTTGGAA
GATTTGTGATGCCCATGGAAGTCGGAAGAGGTGGAAAAGGAGACAAATCCTCTAAATTAGCCATGTTGCTCCCACCAACC
ATGCTCTGCAGATTATTACGGGCTATGTCAGGTTTCATGATTTAGCATAGATTAATGAAAATAAATCTGTTGATTGGGTG
TTATGGGTTTAAAGGTTTTCCAGGTATCCTCAGTTCAATTGATTGCACGTGTTGACAATGGAAGAACAAAAAGGCCATCA
TCATACTCAGCAGTGACATCAAAGGGACTTGTGGATTTGACATGCTTGGTTCTCACAACAACATTAGTGGGCTTCAGCGA
TCTCCCGTGTTTAGAAGACTTTGTAATGGGGAAGTGTCGCCGTGCAAATACACTGTCAATGGGCACGATTACAATATGGG
ATACTACCTTGCTGCTGATATCTGTTATCAGTGGGCAACGTTTATGAAGACCATATCCGATCCTCGTGGTAACAAACAAG
GCCACTTTACAACAATACAGAAACTAGGAAGGATGTGCAGAGAGCATTCAGAGTGCTCCAAACTCATTTGGGAATTGTCC
ATGGAGTTGCAGTGACGTGGGAATCGAAGACTTTGTGGCAGCTGATGATATGTTATGTTATTTTGCACAATATAATAGTT
GAGGACGAGGATGAAGGGGCAACCCGAACCCAATATTATTGAGAAATCTGAAGAACAAGATGT
>chr1D_32
-------------------------------TTGGATGTAATAACGTCTTGCATGGGCAA----AGGGGGTATTATACTA
TTATTATCCACAATAAATAAATAAACTATGATTTGGAGAATATATATTTCTTTAACATTGAATCTTTGATGGAAACGTTT
TCACCTTCTTGGAAATTTATAGACCTTTTTCATGATGTAACCAAACAAGCTTT---------------------------
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----------------------------------------GATCCATGACATGTCATGGCTCCACAATATGAGTCAGTTC
ATACCCTGCAAAAAAAATTCAGTCAGTTCAGAATACGCTTGTCAAATGTATTCTCATGGTTTTCAGAAAATATCAACATT
TGCGAAAACATATAATGCGGGTCAGTATATCTTCTTAGAATGGCACAAAAAAATACAGATTTTTGTGGAAATTGAAATTT
TAAATGACATCCTCAAATGCCATGTCAAATTGTCAAATGTGCCTAACAGACTACACTATCACTCTGAGAAAAACACATTT
TATTTTATATCCCTAATAAGAAACACTAGTACACCAAAGATCTTGG---CGTCGGCGGCAATGAGCCTCCTGGAAGCCCG
CCTCCCGGCCGTCGCCAAGAACTGCACCCGCCGGCAGCTCGACCAGATCCATGGCCTCCTCCTCACCTCCTCCCTCCACC
GTCTCCCGGGCCTGCCCGCCCTCCTCGTCCGCCGCGCCACCGACGTCGGCGACATGGCCCACGCCGACCTGCTCTTCTCC
TCGTTCCTCCGGTCGGGGGCGCCGCACGACGCCGCTCTTTACAACGCCATGATCCGCGGGTGCTCGTACCACGGCCCCCA
CGAGCGCGCGCTGGAGCTGTTCGACGAGATGCCGCGCCGGGGCCTGGTGGCCGACGGATTCACCTACCCGTACGTCCTGG
ACGCGTGCGCGCGGCTCCGGGCGCGGCCGCGCGGCGAGGGCGTCCACGGCCGGGTCCTGAAGGAGGGGCTCGACCACGTG
CCGGCCGTCGGGAGCTCGCTGCTCGCGTTCTACGTCTCCGGC---GGCGGCGGCTCGCTGGGCGACGCGCGGAGGCTGTT
CGACGGATTGCGCGTCAGGTCCGTGGGCCTGTCGAACCACATGATGGCGGAGTACGCCAAGGCCGGGGACGCCGGCTCCG
CGCGGGAGCTCTTCGACGCGATGCCGGCCAGGGACGCCGTGTCGTGGAACTCGATGCTCGCCGTGCACGTCAGGTCGGGC
GACGTCGCGGCGGCGAAGGAGCTCTTCGCGGAGATGCCGGAGAGGGACGTCGTGTCGTGGACGACGATGCTGAGGGCGCT
GTCCGTGGCGGGCGACTTCGCCGGCATGAGGAGCCTGTTCGGCCAGATGCCGGAGAGGAACCTGGTGTCCTGGAACTGCG
TGCTCTCGAGCTACACCCGGCACGGCAGGTTCTCGCAGGCCCTCCGCCTCTTCCCATGGATGCTGCTCGAAGGCCACACG
CCCAACAGCTTCACCGTCGTGTCGCTCCTCTCGGCCTGCGAGCACCTCCGGAAGCTCCGGATGGGCCGGTGGGTGCACGC
CAACCTGGTGACGCCGGCGCTGCAGGCCCACGCCGCCGTCGGGACGGCGCTGGTGGAGATGTACGCCATGTGCGGCGACG
TAGCCCGTGCGCTCGTCATCTTCACCAAGATGCGCAGCAAGGACGTGTTCGCCTGGAACGTGATGATCAGGGGCCTGGCG
GTGCACGGGCGGGCCGGCGACGCGCTCAGGCTGTTCGACCTCATGAAGCGGCAGGGCTTCCGGCCCGACCGCTTCACCTT
CATGGGCGTGCTGCTGGCGTGCAGCCACGGGGGGCTCGTCGACGAAGGGCGCCGGGCGTTCGACGCGATGCAGAGGGAGC
ACGGCGTCCGCCCCTCGCCGGAGCACTACGGCTGCCTGGTCGACCTGCTCTGCCGCGGCGGCGATGTCGACGGGGCGGTG
GGAGTGGTGCGCGCGATGCCTTGCCGGCCGGACCAGGGGGTCTGGAGGGCGCTGCTCGGCGGGTGCGGCGTTCGGGCCGG
CCTCGGGTCGGCCGAGGTCGCGGCGACGGCGACGG------TTGGCTGGTCGGAGGATGGCGAGCGTGCGCCGTTGAGCG
ATCTCTTCAAGATAAGCAAGTAGATATGCGAAC--GTAATTCAGACGCCGCTGACTGACTTATCCGGG------------
--------------------------------------------------------------------CTCGCGTGTTAC
CATGGCTGTCGACGAG-------GCGCCACCGCGGTAAAGAACCCCACCATTGCCTACCGGGTCGCCTCTATCTGCGCCA
TGATCGACGAGCACGACGCCACCAAGACGCCCATTAGCGCTAGAC-----------------------------------
-------GATGCCCATGGAAGTTGGAAGAGGTGGAAAAGGAGACAAATCCTCTAAATTAGCCATGTCGCTCCCACCAACC
ATGCTCTGCAGATTATTATGGGCTATGTCAGTTTTCATGATGTAGCATAGATTAATGAAAATAAATCTGTTGATTGGGTG
TTATGGACAAG-AGGCTTTTCAGGTATGCTCGGTTCAATTGACTGCACACGTTGACAAATGGAAGAAC------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>chr5B_202
CAAACAATG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CCTTTTTTTGCGAGAAAAACTTCCAATCTATT
TATTTTCAATCATGGTAGTACAACAAACACTAAAAATAATAAAAA-TTACGTCCAGATCCTTAGACCACCTAGCGACGAC
TACAAGCACTGAAGCGAGCCGAAGGCGCGCCGCTGTCATCGCCCCTCCCCTCGCCGGAGCCGGGCAAACCTTGTTGTAGT
AGACAGTCGGGAAGTCGTCGTGCTAAGGTTACATAGAACCAACGCACCAGAACAGCAA-CCGCCGT-GGATGAAGAGT--
-GTAGATCAA-AACGATCCAACCTAAAAACATATGAACCAAGACGAACGACAAACAGATCCGAGCAAATCCACCAAAGAC
AGATCTGCCGGAGACACACCTCCACACGTCCACCGATGATGCTAGACGCATCACCGGAACGGGGGCTAGGCGG-TGAGAC
CTTTATTCCATCTTTAGAGAGCCGCCACCGTCTCACCTTCCTGAGCAGAACACAAACCCTAACAAAGCTCGAAAA-A--G
ATCTAAAAATGGA-GCCCTCCCACCGGCAAGGACAGAGATCCACTCTGCCTCCATGGCCCTAAGGCCACCGAAGACGGGA
CGGACCAGCGCTGGTGCCGGCGGGAG------------------------------------------------------
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>chr1D_207
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----------------------------------------------AACATTTGTTTCT-GGGAAAACTATCAATCTATT
AATCTTCAATCATGGCAGTACAACAAACACTAAAAATAATAAAAAATTATATCTAGATCTGTAGACTACCTATCGATGAA
TACAAGCACTAAAGCGAGCCGA-----------TGTCATCGCCCCT-CCCTCGCCGGAGCCGGACAAAACTTGTTGTAGT
AGACAGTCAAGAAGCCATCATGCTAAGGCCCCATAGGACAAGCGCACTAGAACAACAA-CCGGCGC-CGTTGAAGAGTAG
CGTAGATCGG-AATGATCCAACCTAAAGACACACAAACGTAGACGAACTGCGACAAAATCCGAGCAAATCCACCAAAGAC
AGATCCGTCGGAGACACACCTTCACAGGCCCACTGACAATGCTAGATGCAACAACGGAACGGAGACTAGGCGG-GGAGAA
CCTTATTCCATCTTCAGATAGCTGTCGTCGTCTTGGCTTCCTGAGCAGGCACAAACCCTTAACAAAACTTGAAGGAA--C
ATCT-AAAGACGA-GCCCTCCCGCCGGCAAGGACCGGGATCCACCGCGCCGCCATGGCCCTAAGTCCACCGGAGACTAGG
CGGACCGGCGGCGGAGCCGGCGGGAG------------------------------------------------------
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>chr6D_210
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-------------------------------------------------CTTTTTTTTTTGGATAAATTTCCGATCTATC
CATCTTCAATTATGGTAGTACAACGAACACCAGAAATAATTAAAA-TTACATCCAGATCCGTAGACCACCTAGCGACGAC
TACAAGCACTGAAGCGAGCCGAAGACGCGCCGCTGTCATCGCCCCT-CCCTCGCCGGAGCCGGGCAAGTTTTGTTGTAGT
AGACAGTCGGGAAGTCGTCGTGCTAAGGCCCCGTAGAACCAACACACCAGAACAGCAA-CCGTCGC-CGATGAAGAGT--
-GTAGATAAG-AAGGATCCAACCTGAAGACACACGAACAAAGACGAACGACGAACAGATCCGAGCAAATCCACCAGAGAC
AGATCCACCGGAGACACACCTCCACACGCCCACCGACGATGCTAGACGTATCACCGAAACGGGGACTAGGCGG-GGAGAC
CTTTATTCCATCTTCAGAGAGTCGCCACCGTCTCGCCTTCCTGAGTAGGACACAAACCCTAACAAATCTCGAAAAAAATA
ATCTAAAAACGGA-GCCCTCCCACCGGCAAGGGCCGGGATCCACTCCGCCCCCATGGCCCTAAGGCCACGGTAGACGGGG
CGGACCGACGCCGGCGCCGGCGGG--------------------------------------------------------
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>chr2A_210
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-------------------------------------------------CTTTTTTTTGCGGAAAAACTTTCAATCTATT
CATCTTCAATCATGGTAGTACAACGGACACTAGAAATAATAAAAA-TTACATCCAGAACCGTAGACCACCTAGCAACGAC
TACAAGCACTGAAGCGAGTCGAAGGCGCGCCGCTGTCATCGCCCCT-CCCTCGACAGAGCCGGGCAAACATTGTTGTAGT
AGACAGTCGGGAAGTCGTCGTGCTAAGGCCCCATGGAACCAACGCACCAGAACAGCAA-CCGCCGC-AGATGAAGAGT--
-GTAGATCAA-AAGGATCCAACCTGAAGACACACGAACGAAGACGAACGACGAACAGATCCGAGCAAATCCACCAAAGAC
AGATCCGCCGGAGACACACCTCCACACGCCCACCGATGATGCTACACACATCACCGAAATGGGGACTAGCCGG-GAAGAC
CTTTATTCCATCTTCAGGGAGCCGCCGCTGTCTCGCCTTCCTGAACAGGACATAAACCCTAACAAAGCTCAAAAAAA--T
ATATGAAAACGGA-ACCCTCCCACCGGCAAGGGCCGAGATCCACTCCGCCTCCATGGCCCTAAGGCCACCGGAGACGGGA
CGGACCGGCACCGGCGCCGGTGGGAGGCAAAGAACC--------------------------------------------
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>chr5B_210
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-------------------------------------------------CTTTTTTTTT-TGAAAAACTTTCGATCTATT
CATTTTCAATCATGATAGTACAACTAATACTAGAAATAATACAAA-TTACATCTAGATCCATATACCACCTAGCGACGAC
TACAAGCACTAAAGGGAGCCGAATGTGCGTCACTGTCATCGTCCCT-TCCTCGACGGAGCCAGGCAGAACTTGTTGTAGT
AGACAGTCGGAAAGTCGTCATGCTATGGCCCCATAGAACCAACACAACAGAACAACAA-CCGTTGT-CGATGAAGAGTAG
TGTAGATCAGAAAAAATCCAACCTGAAGACACGAGAACATAGACGAACGATGAACAGATGCGAGCAAATCCACCGTAGAC
AGATCTGCCGGAGACACGTCCTCACACGCCCACCGGCGATG---GAAGCACCACCGAAACGGGGCCTAGA-GG-GGAGAA
CCTTATTCCATTTTTAGGGAGCCGCCACCGCCTCGTCTTCCTTAGCAGGACAGAAACCCTAACAAAACTCGAAGAAA--G
ATCTAAAAACGGA-GCCCTCCCACCAGCAGGAACCATGATCCACTCTGTTCCCATGACTCTACGGCCGCAGGAGACGAGG
CAGACC--------------------------------------------------------------------------
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>chr4D_211
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--------------------------------------------------TTTTTTTTT-TGAAAAACTTCAAATCTATT
CATCTTCAATCATGATAGTACAACAAACACTAAAAATAATAAAAG-TTACATCCAGATCCGTAGACCATCTAGCAATGCC
TACAAGCACTGAAGCGAGCCGAAGGCGCGCCGCTGTCATCGCCCCT-CCCTCGCCGGAGCCAGGCAAACCTTGTTGTAGT
AGACAGTCGGGAAGTCGTTGTGATAAAGCCCCGTAGAACCAACGCACCAGAACAGAAA-CCGCCGC-GGATGAAGAGT--
-GTAGATCAA-AAGGATCTAACCTGAAAATACACGAACAAAGACGAACGACGAACAGATCCGAGCAAATCCACGAAAGGC
AGATCCGCCGGCGACACAACTCCACACGCCCACCGACGATGCAAGACGCATCACCGAAACGGGG-CTAGGCGG-GGAGAC
CTTTATTCCATCTTCAGCGAGCCGCCACCGTCTTGCCTTCCTGAGCAGAACACA-CACCTAACAAAGCTCGAAAAAA--G
ATCTAAAAACGAA-GCCCTCCCACCGGCAAGAGCCGAGATCCACTCCGCCTCCATGGCCATAGGGCCACCGGAAACGGGA
TGGACCGGCGCCGGCGCCGGTGGGAGGC----------------------------------------------------
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>chr4D_211
--------------------------------------------------------------------------------
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--------------------------------------------------TTTTTTTTCCGAGAAAACTTTTGATCTATC
CATCTTCAATCATGGTAGTACAACAAACACTAAAAATAATAAAAA-TTACATCCAGATCCATAGACCACCTAGCGACGAC
TACAAGAACTGAAGCGAGCCGAAGGCAAGCCGCTGTCAACGCCCCT-CCCTCACCGGAGCCGGGCAAAACTTATCGTAGT
AGACAGTCGGGAAGTCATCATGCTAAGGCCCCATAGGACCAGCGCAGCAGAACAACAA-CCGCCAT-CAATGAAGAGTAG
CGCAGATCAG-AAGGAGCCAACCTGAAGACACATGAACGTAGATGAACTACGACCTGATCCGAGCAAATCCAGTAAGGAT
AGATCCGCTGGAGACACACCTCCACACGCCTACCGACGATGTTAGACACGCCATTGGGAC--GGGCTAGA-CGGGGAGAA
C--------------------CCGCCGCCATCTCGTCTTCCTGAGCAGGACACAAACCCTAACAAAACTCGAAGGAA--C
ATCTAAAAATAAA-GCCATCCCACTGGAAAGGGTTGGTATCCACCACGCCGCCATGGCCCTAAGACCACCGGACACGAGG
CGGACCGATGGCGGCGCCGGTGAGAGGC----------------------------------------------------
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>chr7A_211
--------------------------------------------------------------------------------
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--------------------------------------------------TTTTTTTTT-TGAAAAACTTTCAATCTATT
CATCTTCAATTATGGTAATACAACGAATACTAGAAATAATAAAAA-TTACATCCAGATCCATAGACCACGTAGCCACGAC
TACA------------AGCCGAAGGCGCACCGCTGTCATTGCCCTT-CC-TTGCTGGAGCCGGGCAAACGTTGTTGTAGT
AGACAGTCGGGAAGTCGTC-TGCTAAGGCTCCATGGAACCAACGCACCA-AATAGCAG-CCGCCGC-AGATGAAGAGT--
-TTGGATCAA-AAGAATCCAACCTGAAGACATACGAGCGAAGACGAACGACGAACAGATCCGAGCAAATCCATCAAAGAC
AGATCCGCCGGAGACACACCTCCGCACACCCATAGATGATGCTAGACGCATCACCGGAATGAAGACTAGG-TG-GGAGAC
CTTTATTCCTTCTTCAGGAAGCCGCCACCGTCTCGCCTTCCTGAGCAGGACACAAACCCTAACAAAACTCAAAAACA--G
ATTTAAGAACGGA-GCCCTCCCACCGGCAAGGACCGAGATCCACTCCGCCTCCATGACCCTAAGGTCACCGGAGACGGGA
CGGACCGGCACCGGCGCCGGCGGGAGGC----------------------------------------------------
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>chr1D_212
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---------------------------------------------------TTTTTTTGTGGGGAGAATTCTGATCTATT
CATCTTCGATTATGGTACTACAGCGAACACTAGTAATAATAAAAA-TTGCTTCCAGATCTGTAGACCACCTAGCGATGAC
TACAAACACTGAAGTGAGCCGAAGGCGCGCCACTGTCATCGTCCCT-CCCACGCTGGAGTCGGGCAAACTT-GTTGTATT
AGACAGCCGGGAGGTCGTTGTACTAAGGCCCCATAGGACCAGCGCAATAGAACAGCAA-CCGTAAC-CGGTGAAGAGTTG
CGTAGATAAG-AAGAAACCAACCTGAAGACACAAGAACAAAGACGAATGACGAACAGATCCGAGTAAATCCACCAAAGAC
AGATCTGCCGGAGACACAGCTCCACACGCCCACCGACGATGCTAGAATCACCACCGGAACGGGGTCTAGGCGA-GGAGAA
CATTATTCCAACTTCAGGGAGCCGCCGTCGTCTCGTCTTCCTGAGCAGGACACAAACCCTAACAAAACTCGAAGAAA--G
ATCTAAAAACGAA-GCCCTCCCACCGGCAAGGGCCGGGATTCACTCCGCTCCCATGGCCCTAAGGCCACCGGAGACGAGG
CGGACTGCCGCCGCCGCCGGCGGGAGGCAAA-------------------------------------------------
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---------------------------------------------------------------
>chr3B_213
--------------------------------------------------------------------------------
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----------------------------------------------------TTTTTTG-CGGAAAAACTTTCATCTATT
CATCTTCAATCATGGTAGTACAACGGACACTAGAAATAATAAAAA-TTACATCCAGAACCGTAGACCACCTAGCGATGAC
TACAAGCACTGAAGCGAGCCGAAGGCGCGCCGCTGTCATCGCCCCT-CCCTAGACAGATCCGGGCAAACATTATTGTAGT
AGACAGTCGGGAAGTCGTCGTGCTAAGGCCCCATGGAACCAACGCACCAGAACAGCAA-TCGCCGC-AGATGAAGAGT--
-GTAGATCAA-AAGGATCCAACCTGAAGACACACGAACGAAGACGAACGACGAACAGATCCGAGCAAATCCACCAAAGAC
AGATCTGCCGGAGACACACCTCCACACGCCCACCGATGATGCTACACACATCACCGGAACGGGGACTAGA-CG-GGAGAC
CTTTATTCCATCTTCAGGGAGCCGCCGCCGTCTCACCTTCCTGAGCAGGACACAAACCCTAACAAAGCTCGAAAAAA--A
ATATGAAAGCGGA-GCCCTCCCACCGGCAAGGGCCGAGATCCACTCCGCCTCCATGGCCCTAAGGCCACCGGAGACAGGA
CGGACCGGCGCCAGCGCCGGTGGGAGGCAAAGAACC--------------------------------------------
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---------------------------------------------------------------
>chr4D_224
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----------------------------------------------------------------AAACTTCCGATCTATT
CATCTTCAATCATGGTAGTACGGCGAACACTAGAAATAATAAAAA-TTACATCCAGATCCGTAGACCACCTAGCGACGAC
TACAAGCACTGAAGCGAGCCGAAGGCGCGCCGCTATCATCGCCCCT-CCCTCGCCGGAGCCGGGCAAACTTTGTTGTAGT
AGACAGTCGGGAAGTCGTCGTGCTAAGGCCCCGTAGAACAAACGCACCAGAACAGCAA-CCGTCGCCCGATGAAGAGT--
-GTAGAAAAG-AAGGATCAAACCTGAAGACATACGAACAAAGGCGAACGACGAACAGATCCGAGCAAATCCACTAGAGAC
AGATCCACCGGAGACACACCTCCACACGCCCACCGACGATGCTAGACGCATCACCGGAACGGGGACTAGG-CGGGGAGAC
CTTGATTCCATCTTCAGGGAGTCGCCGCCGTCTCGCCTTCCTGAGCAGGACACAAACCCTAACAAATCTCGAAAAAA--G
ATCTAAAAACGGA-GCCCTCCCACCGGCAAGGGCCGGGATCCACTCCGTCCCCATGGCCCTAAGGCCATGGTAGATGGGA
CGGACCGACACCGGCGCCGGCGGGAGGC----------------------------------------------------
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>chr5D_228
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--------------------------------------------------------------------TTTCGATCTATT
CATTTTCAATCATGATAGTACAACGAACACTAAAAATAATAAAAA-TTACATCCAGATCCGTAGACCACCTAGCGACGAC
TACAAGCACTGAAGCGAGCCGAAGGCGCGCCGCTGCCATCGCCCCT-CCCTCACCGGAGCCGGGCAAACTTTATTGTAGT
AGACAGTCGAGAAGTCGTCGTGCTAAGGCCCCATAGAACCAACGCACCAGAACAGCAA-CCGTCGT-CGATGAAGAGT--
-GTAGATAAG-AAGGATCCAACCTGAAGACACACAAACAAAGACGAACGACGAACAGATCCGAGCAAATCGACCAGAGAC
AGATCCACCGGAGACACACCTCCACACGCCCATCGACGATGCTAGACGCATCACCGGAACGGGGACTAGG-CGGGGAGAC
CTTTATTCCATCTTCAGGGAGTCGCCGCCATCTCGCCTT-CTGAGTGGGACACAAACCCTAACAAATCTCGAAAAAA--G
ATCTAAAAACGGA-GCCCTCCCACTGGCAAGGGCCGGGATCCACTCCATCTCCATGGCCCTAAGGCCACAGTAGACGGGG
CGGACCGACGCCGGTGCCGGCGGGAGGC----------------------------------------------------
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>chr2B_232
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------------------------------------------------------------------------GAGCTATT
CATTTTCAATCATGATAGTACAACGAACACTAGAAATAATAAAAA-TTACATTCAGATCCGTAGAGCACCCAGCGACGAC
TACAAGCACTGAAGCGAGCA---------------------TCCCT-CCCTCGCCAGAGCCGGGCAAACCGTGTTGTAGT
AGGCAGTCGGAAAGTCGTCGTGCTAAGGCCCCATAGAACCAACGCACCAGAACATCATGTCGCCGG-CGATGAAGAGT--
-GTAGATAAG-AAGGATCCAACCTGAAGACACACGAATAAAGACAAACGATGAATAGGTCCAAGCAAATCCACCAAAGAC
AGATCCACCGGAGACACACCTCCACATGCCCACCGACGATGCTAGACGCATCACTAGAAAGGGG-CTAGG-CAGGAAGAA
CTCTATTCCATCTTCAGGGAGCCGCCATTGTCTCGTCTTCCTAACTAGGACAAAAACCCTAACAAACCTCGAAAAAA--G
ATCTACAAACGGA-GCCCTCCCACCAGCAAGGACCTTGATCCACTCTGCCCCCATGGCCCTAAGGCCACAGAAGACGAGG
CGGACCGGTGCCGGCGCCGGCGGAAGGC----------------------------------------------------
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>chr1B_236
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----------------------------------------------------------------------------TATT
CATATTCAATCATGGTAGTACAACGAACACTAAAAATAATAAAAA-TTACATCCAAATCCGTAGACCATCTAGTTACGAC
TACAAGCACTCAAGCAAGCCGAGGGCGCGCCACTGTCATCGCCCCT-CCCTCATCGGAGTCGGGTAAAACTTGTTGTATT
AGACAGTCGGCAAGTCGTCGTGCTAAGGCCCCATAGGACTAGCGCAACATAATAGCAA-CCGCCGC-CGATGAAGAGTAG
CGTAGATCAG-AAGAACCCAACCTCAAGACACAAGAATAAAGACGAACGACGAACAGATCCGAGTAAATCCACCAAAGAC
AGATCTGCCGGAGACACAGCTCCACATGCCCGCATACGATGCTAGAAGCACCACCGGAACGGGC-CTAGG-CGAGGAGAA
CCTTATTCCAACTTCAGGGAGCCGCTGTCGTCTCGTCTTCCTGAGTAGGACACAACCCCTAACAAAACTCGAAGAAA--G
ATCTAAAAACGAA-GCCCTCCCACCTGCAAGGGCCGGGATTCACTCTGCTCCCATGGCCCTAAGCCCACCGGAGATGAGG
CGGGCCG-------------------------------------------------------------------------
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>chr1B_1043
TGCCTAAG------------------------------------------------------------------------
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----------------------------------------------CAAACTACACTATCACTCGGAGAAACACACATTT
TACGTGTCAATTCGTCG-----------------------------CGTCGGCGGCGGCAATGAGCCTCCCAGGAGCACG
CCTCCTGGCCGTCGCCAAGAACTGCACCCGCCGGCAGCTCAGCCAGATCCATGGCCTCCTCCTCACCTCCTCGCTCCACC
GTCTCCCGGGCCTGCCCGCCCTCCTCGTCCGCCGCGCCACCGACGTCGGCGACATGGCCCACGCCGACCTGCTCTTCTCC
TCGTTCCTCCGGTCGGGGGCGCCGCCCGACGCCGCCCTCTACAACGCCATGATCCGCGGGTGCTCGTACCACGGCCCCCA
CGAGCGCGCGCTAGAGCTGTTCGACGAGATGCCGCGCCGGGGCCTCGTCGCCGACGGCTTCACCTACCCGTACGTCCTGG
ACGCGTGCGCGCGGCTCAGCGCGCGGCGGCGCGGGGAGGGCGTCCATGGCCGGGTCGTGAAGGAGGGGCTCGACCACGTG
CCGGCCGTCGGGAGCTCGCTTCTCGCCTTCTACGTCTCCGTGTGTGGCGGCGGCTCGCTGGGCGACGCGCGGAGGCTGTT
CGACGGATTGCGCGTCAGGTCCGTGGGCCTGTCGAACCACATGATGGCGGAGCACGCCAAGGCCGGGGACGCCGGCTCCG
CGCGGGGGGTCTTCGACGCGATGGCAGACAGGGACGTCGTGTCGTGGAACACAATGCTCGCCGTGCACGTCAAGTCAGGC
GACATCGCGGCGGCGAAGGAGCTTTTCGCTGAGATGCCGGAGAGGGACGTCGTGTCATGGACGACAATGCTGAGGGCGCT
GTCCGTGGCGGGCGACTTCGCCGGCATGAGGAGCCTGTTCAGCCAGATGCCGGAGAGGAACCTGGTGTCCTGGAACTGCG
TGCTCTCGAGCTACACCCGGCACGGCAGGTTCTCGCAGGCGCTCCGCCTCTTCCCATGGATGCTGCTCGAAGGCCACACC
CCCAACAGCTTCACCGTCGTGTCGCTCCTCTCGGCCTGCGAGCACCTCCGGAAGCTGCGGATGGGCCGGTGGGTGCACGC
CAACCTGGTGACGCCGGCGCTGCAGGCCCACGCCGCCGTCGGGACGGCGCTGGTGGAGATGTACGCCATGTGCGGCGACG
TAGCCCGCGCGCTCGTCGTCTTCACCAAGATGCGCGGCAAGGACGTGTTCGCCTGGAACGTGATGATCAGGGGCCTGGCG
GTGCACGGGCGGGCCGGCGACGCGCTCAGGCTGTTCGACCTCATGAGGCGGCAGGGCTTCCGGCCCGACCGCTTCACCTT
CATGGGCGTGCTGCTGGCGTGCAGCCACGGGGGACTCGTCGACGAAGGGCGCAGGGCGTTCGACGCGATGCAGAGGGAGC
ACGGCGTCCGCCCCTCGCCGGAGCACTACGGCTGCCTGGTCGACCTGCTCTGCCGCGGAGGCGATGTCGATGGGGCGGTG
GGAGTGGTGCGCGCGATGCCTTGTCGGCCGGACCAGTGGGTCTGGAGAGCGCTGCTCGGCGGGTGCGGCGTTCGGGCCGG
CCTCGGGTCGGCCGAGGTTCCGGCGACGGCGACGGCCACGGGTGGTTGGTCGGAGGATGGCGAGCGTGCGCCGTTGAGCG
ATCTCTTCAAGATAAGCAAGTAGATATGCGAAC--GTAATTCAGACGGCGCTGACTGACATG------------------
---------------TGGTCGAATCCCTCGTTCATCATCACCTCGATAGCATTGT-------------------------
---------CGACGACGAGCAGCGCGCCACCACGGCAAAGAACCCCACCATTGCCTACCGGGTCGCCTCTGTCTGCGCCA
TTATCGAGGAGCACGACGCCAGCAAGACGCCCATGAGCGCTAGCCGAGTTGCTGCCATGTACTCCATTGAAAGGTTGGAA
GACTTGTGATGCCCATGGAAGTTGGAAGAGGTGATAAAGGAGACAAATCCTCTAAATTAGCCATGTCGCTCCCACCAACC
ATGCTCTGCAGATTATTATGGGCTATGTCAGGTTTCATGATATAGCATAGATTAGTGGAAATAAATCTGTTGACTGGGTG
TTATGGGCAAG-AGGTTTTCCAGGTATGCTCGGTTCAATTGATTGCATGCGTTGACAACAGAAGAA--------------
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>SNPs
--SSS--S-SSSSSSSSSSSSSSSSSSSSSS--------------S--------SSSS-SSSSS----S-----------
----------------------------------S--S----------S---------------------S---------
----------------------SS--------------------------------------S-----------------
----------------------------------------------S---------------------------------
------------------------------------S-------------------------------------------
-S------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
S---S-------------------------------------------------------S-----SSS-S--S------
---------------------------------------S--S-------S-----------S-----------------
-------------S-----S------S-----------------------------------------------------
----------------------------S--SS-S-SSSS-------------S----------------S---------
-S-SSSS--SS--------------------------------------------------------------S-S----
---------------S-S-S----SS------------------S-S---S------------S-------------S--
-------------------------------S------S------------------S----------------------
--------------------------------------S------S----------------------------------
----S--S------------------------------------------------------------------------
-S------------------------------------S-----------------------------------------
--------------------------S---------------------------------S----S--------------
---------------------------------------------------S----------------------------
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--------------------------S-----------------------------------------------------
---------------------------------------------S-------------------------S--------
----S---------------------------------------------------------------------------
-----------S--------------------------------------S-----S-----S-----------------
------S--S----------------------------------S-----------------------------------
-----------------S--------------------------------------------------------------
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-------------------------------------------------------------------------S------
-----------------------SS-------------------------------------------------------
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-----------------------------------------S------------------------------------S-
-------------------------------------------------------S------------------------
S-S-------------------------------S------------------------------------------S--
-----------------S-----------------------------------S---S----------------------
---------------------------------SS-----------------S-------------S-SSSSSSSSSSSS
SSSSSSSSSSSSSSS---------------------S------------------SSSSSSSSSSSSS----------S-
--------------S---------------------------------------------------------S----S--
-------------S-----------------S------------------------------------------------
--S-------------------S-------------------------------------------S-------------
------------------S----------------------S--------------------------------------
-------SSSSS---------------S---S-----------------S--------SS------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_683
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-----------------------GCCGCCGTCTCATCTTACTC-------------------------------------
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>reverse_1897
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--------------------------------------------------------TTGGACAACGATGCTGAGGG----
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>forward_840
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--------------------CGGGAGGCCAAACAACCTTT----------------------------------------
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>reverse_2755
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----------------------------------AGTAATTCAGACGGCGCTCA--------------------------
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