>input_sequence_45742
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----------------------------------------ATGGCACTCCCTAAGCTCCTCCTGCTTCTCTTCGTCGGCG
GTGCACTGTCACTCACCTTCTTCTCCGGTTCAGGTAATCACAACCACGCACTGAAGCAGCAGCTGTGTTAATTAGCTAAC
CTTTCGGCCGTACATTGCATTGCAGCAGAGGCCGGCGAGGTGGGCGTGTGCTACGGGATGATGGGCGACAACCTGCCGCA
GCCGCCGGCGGTGGTGCAGCTGCTGAAGCAGCACGGCATCACGATGGTGAGGCTGTACGACGCCGACGCCGGAGGGCTGC
GCGCGCTGGCCAACACCGGCATCAAGGTGGGGGTGTCCCTGCCCAACGACAACATACCGGACGCGGCGAGCAGCATGTCG
TACGCGGTGCGGTGGGTGCAGAGCAACGTGCAGGCG---TACCCGGGCACGTGGATCGACAGCGTGGCCGTCGGGAACGA
GGTGTTCCACCAGGCGCCATGGCTGACCCACCAGCTCCTCCCGGCCATGAAGAACATCCAGGCGGCGCTGGCCGGGGCCG
GCCTGGGCGACGCGGTGAAGGTGGTGACGCCGATCGCGCTGGACGCGCTCAAGGTGCCGTCGTTCCCGCCGTCCGTGGGC
GAGTTCCGGGACGACATCGCGTGGTCGGTGATGCGGCCCATGGTGGATTTCCTGGAGCAGACCGGCTCCTACCTCACCTT
CAACATCTACCCCTACTTCGCCTACAAGTACGATTCTCACG---TCGACCCCGACTTCGCCTTCTTCCGCCCCAACAACG
GCCAGCACGACCCGGGCACCGGCCTCACCTACTTCAACCTGTTCGACGCCATGGTCGACGCCGTGTTCCATGCCGTGGAG
AAGCTGGGCAACTCCGGCGAGCATACTCATGGTAATGGCAGGACGCGTCGACGTGTTGCCTCGTTGATGAGGGTTCCAGA
GTCGGGTGCCCCGGGCGGCAAAGGCAAAACGGGGGTGGCCTCGAACTCGAAGCTGGACGGCTCGGCTTCGACGGAGAACG
CCCAGGCGTACAACTCCAACCTCATCCGCAAGGTCCTGAGCGGCGCCGGCACGCCGTACAACCCCGACGCGGACATCTCC
GTCTACATCTTCTCCCTCTTCAACGAGAACCTCAAGCCGGGCGACGACGACGAGCGCAACTTCGGCCTCTTCTACCCCAA
CGGCACGCAGGTGTACGACGTGAACTTCACCCGCCCCGGCCCCGGCCCCGGCCCCGGGGGGCCAAGCTGGTGCGTGGCGA
ACGCGGCGGTCGGGGACCGGAGGCTCCAGGACGCGCTGGACTACGCGTGCGGGAACGGGGCGGACTGCAGCGGCATCCAG
GCCGGCGGGTGGTGCTTCGAGCCCAACACCAGGGTCGCGCACGCCTCATACGCGTTCAACGACTACTACCAGCGCAACGG
CCGGTCCGTCCAGTCGTGTGACTTCGGCGGCTGCGGCTCCGTCGTCTACCAGCAGCCAAGTGAGTTCACTTCACCCTCCG
CAAGCTAGCTAGCTAGCTATTCTTCCGTCGTCAACATGTTATCCCTTTTTGTTTGATTTGATTTGATGGTGCTTAATTAT
TCAACTGTTGGCAGGCTTCGGCAACTGCGTGCTGCCACAATGGCGTAATGGACTCAAGAGGTTGGGAGGAGGACCAAACA
CGGGGCCGCCCTACGTGCACCTCGCTCAGGGATAG---------------------------------------------
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>chr5A_1_TraesCS5A01G338400
GAGCAAGCAACAAACATGATGCAGGGCAATGCACATGATGAACTTGGAAACAACATGGACGACACAATGCTATAATATGA
TGCATCAAGCAAAAGATGGCATAAAGCAAAATGATAAAGATGGCATGGAATGCAATAAGTAAAACAACAAAGCAAAACAA
ATGAAGCCAACAATGATGGGACCCACATGGAATTAGATCAAGACCAAGTTGGATATATGTTACAACATGGGAAGGATTAC
ATATGGGGTGTTACATTCACCGGTAGCTTACCGAAAAAGGCTTTCGCCCCGCTTTATATATAAAGCATCAACCACACATT
ACAGCCATCACCACAACAAAGAAGGAAAAGAAGAGGACAGTGGTTGGATTCACCGGTAGCTTTAGTTTTTTGTTATCTTG
TGAACCAACCTGTGGTTGGATGGTTAGAGGACAGTGGTATTCCCAGCCGACCAGGATTCAAGTCCTGGTGTTCGCATTAT
TTTCTGAATTTATTTCAGGATTTCTGGCGATGCACTTTTAGTGGGAGGAGACGTTGCATGATATGCCGGCTCAGTCTATC
GAAGATGTTCATAGGAGTAGGGTGTGCGTGTGTGCCTTCACAGGAATGAATGTATATGCGTATGTATGAGCGCTTGCGTC
TGTACTGTGTTAAAAAAAAGGTTTTCGTTTTCGTTATCTTTGTCTTTTTCGTTTCCTTTGTTTGGTTTTGCCCTTTCGGC
ATGCCGTTGTTTTGCTGCTTAATCAACAGAATACAGCGGCCTTTTCGTCAAACAAATGGATAAGTATCCCAACTGGATTT
GTTCGGAAAAAATAAAACGGTACGTATACCGCATTAACTTAACTAATTTCAAATCTTTTTCCAAGCGGAGTATCCAAATG
CAATGCACGCCGCCGGCCGGGCATCAGTTGACTTGACCTCGACCATGTGGCTCCATCGTCCCGTCTATAATCCCTCGATC
GATCTTCTTGCCGTAGCAGCTAGAACCTAGCTAGGAGAGCATGGCACTCCCTAAGCTCCTCCTGCTTCTCTTCGTCGGCG
GTGCACTGTCACTCACCTTCTTCTCCGGTTCAGGTAATCACAACCACGCACTGAAGCAGCAGCTGTGTTAATTAGCTAAC
CTTTCGGCCGTACATTGCATTGCAGCAGAGGCCGGCGAGGTGGGCGTGTGCTACGGGATGATGGGCGACAACCTGCCGCA
GCCGCCGGCGGTGGTGCAGCTGCTGAAGCAGCACGGCATCACGATGGTGAGGCTGTACGACGCCGACGCCGGAGGGCTGC
GCGCGCTGGCCAACACCGGCATCAAGGTGGGGGTGTCCCTGCCCAACGACAACATACCGGACGCGGCGAGCAGCATGTCG
TACGCGGTGCGGTGGGTGCAGAGCAACGTGCAGGCG---TACCCGGGCACGTGGATCGACAGCGTGGCCGTCGGGAACGA
GGTGTTCCACCAGGCGCCATGGCTGACCCACCAGCTCCTCCCGGCCATGAAGAACATCCAGGCGGCGCTGGCCGGGGCCG
GCCTGGGCGACGCGGTGAAGGTGGTGACGCCGATCGCGCTGGACGCGCTCAAGGTGCCGTCGTTCCCGCCGTCCGTGGGC
GAGTTCCGGGACGACATCGCGTGGTCGGTGATGCGGCCCATGGTGGATTTCCTGGAGCAGACCGGCTCCTACCTCACCTT
CAACATCTACCCCTACTTCGCCTACAAGTACGATTCTCACG---TCGACCCCGACTTCGCCTTCTTCCGCCCCAACAACG
GCCAGCACGACCCGGGCACCGGCCTCACCTACTTCAACCTGTTCGACGCCATGGTCGACGCCGTGTTCCATGCCGTGGAG
AAGCTGGGCAACTCCGGCGAGCATACTCATGGTAATGGCAGGACGCGTCGACGTGTTGCCTCGTTGATGAGGGTTCCAGA
GTCGGGTGCCCCGGGCGGCAAAGGCAAAACGGGGGTGGCCTCGAACTCGAAGCTGGACGGCTCGGCTTCGACGGAGAACG
CCCAGGCGTACAACTCCAACCTCATCCGCAAGGTCCTGAGCGGCGCCGGCACGCCGTACAACCCCGACGCGGACATCTCC
GTCTACATCTTCTCCCTCTTCAACGAGAACCTCAAGCCGGGCGACGACGACGAGCGCAACTTCGGCCTCTTCTACCCCAA
CGGCACGCAGGTGTACGACGTGAACTTCACCCGCCCCGGCCCCGGCCCCGGCCCCGGGGGGCCAAGCTGGTGCGTGGCGA
ACGCGGCGGTCGGGGACCGGAGGCTCCAGGACGCGCTGGACTACGCGTGCGGGAACGGGGCGGACTGCAGCGGCATCCAG
GCCGGCGGGTGGTGCTTCGAGCCCAACACCAGGGTCGCGCACGCCTCATACGCGTTCAACGACTACTACCAGCGCAACGG
CCGGTCCGTCCAGTCGTGTGACTTCGGCGGCTGCGGCTCCGTCGTCTACCAGCAGCCAAGTGAGTTCACTTCACCCTCCG
CAAGCTAGCTAGCTAGCTATTCTTCCGTCGTCAACATGTTATCCCTTTTTGTTTGATTTGATTTGATGGTGCTTAATTAT
TCAACTGTTGGCAGGCTTCGGCAACTGCGTGCTGCCACAATGGCGTAATGGACTCAAGAGGTTGGGAGGAGGACCAAACA
CGGGGCCGCCCTACGTGCACCTCGCTCAGGGATAGCCATAGCAGCTTGTGCCTGCTTTAAAGAAGCTCTAGCATTGCGAT
GCACTCCGTGTAGTAGTACTACTTGGGAATCCCGTACTACTTCCGTCCTGGTTTATCCCTGTAATATTTTGTGACAAATA
ACAAAGGGTGTGTCTAGTGCACATCTAGATATGCTTTAGTTATTACACATCTAAGTAAGTGAATCAAGCATAAAGAGAAA
AAGGAAAAAGAGAAAGAAAATATTCATACGAATCTTAATGTAAAATCAATGAAGACTTAGATGTGCAATACTTATGGCAC
ATCTAGATGTGTTTTAGCAAAACTGAATAACAAAATGTTAGTGCATATCATAAGAAAACAGCATCATTGAAAACTATGTT
CAAATACGAACCCAACGATATAGTAATTTTTTTGGCATGCATTAACATTCATCAGTTAAACCTATGATTAAATTTTGGCA
CGAAACACGAGGAGGACTAATAAATCAAAGGTATAACAAATAAGTAATACGCTGGAGCGAAATGCATTATCGGTCACTGA
GTTCATCTCGCACATGGAGTGAAATGCATTATCGGTCACTGAGTTTATCTCGCACATTCACTTTGAACACTGTATGTTAT
GATCGTTGAAGCCGGACGCAGATTCAACGTGGATTACTGTGTGTTTGGAACCAATACCACACTGATACAATGGAGGAACA
ATGAACCACATTTGTTTAGGTCCAACACTTTTATCATGTCACATGGGCTGAGGTCGAGTGGAGTCAATGGCCATCAAACT
GGGACCGGGGTCCGTGGACACTGTCCATGTGCAAGCCCAGTTGGAAGATGAGATGTACACGCATGACCCGTGAACCAACA
TATTGATGATAAATCTTTCTCAAAAAAAAAACATATTGATGATAAATGTCCCACCGCCCACTTAACGTGCCAGTGTTTGT
ATGCGAAAACTCAATTATCTCAACATTGTGTATATATAGCCTCCCTCCCTCCTCCGTGAATCCTTAATTCTCCTC
>chr7B_1145
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------------------------GCAGAGGCGGGCGAGGTGGGCGTGTGCTATGGCAGAGTCGGCGACAACCTGATGGA
CCCGGCGGTGGTGGTGCAGCTGCTCAAGAAGAACGGCATCACGACGGTGAGGGTGTACGACACCGACCCGGCCGTGCTGC
GCGCGATGGCCAACACCGGCATCAAGGTGGTTGTGGCGCTGCCCAACGAGATGCTGGCCTCCGCGGCCGGCGACCCGTCG
TACGCGCTCCGGTGGGCGAGGAGCAACCTGGCGCCCTACTACCCGGCCACGGACATTCGCGGCGTGACGGTCGGGAACGA
GGTCTTCCAGCAGGCGCCGCAGCTCACGCCGCAGCTCCTCCCGGCCATGAGGAACGTGCGGGCGGCGCTGGTTAGCCTGG
GCCTGGGCGACGCCGTGAAGGTGACCACGCCGGTCGCGTTCGACGCGCTCAAGGT---GTCGTTCCCGCCGTCCAGGAGC
GCGTTCCGGGATGACGTCGCGCAGTCGGTGATGAGCCCCATGCTCGACTTCCTGGAGCAGACCGGCTCCTACCTCATGGT
GAACATCTACCCGTACTACACGTACACGTTCCAGCCCAACGTGATCGACCTCAACTACGCGACGTTCCGCCCCAACGCCG
GCGTCGTCGACCCCGTGACCGGCCTCACCTACTCCAACCTCTTCGACGCCCAGCTCGACGCCGTGTACTACGCCATGGAC
AACCTGG-------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS--------S--------------------S--S-SSS-S------------SS-S-
S---S---S---------------S---S--S------------S-------S--------S-----S-S-SS-S-----
-----S------------------------SS---S-S-----------S-SSS-SS-SSS------SS--SS-SS----
------S-S-------S-SS-------S--SS-S-S----------S----SSS--SSS-S-----S-S-----------
---S-----S--------SSS---S--S-SS-------------------S----S-S-S-----------SSS-SSSS-
-------------S---------SSS------S-----S-S--------------SSS----------------SS-S--
-S---------S---S-----SS----------S-S------S-S--S----------------------------SSS-
S-----------S----S-S-S----S--S-S-SS-SS------------S-S---S---SSSS------------SS--
--SSSSS------S-SS----------------S------S---------SS-S------------S-S-S---S----S
--S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_380
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----------------------------------------TGGTTGGATTCACCGGTAGC--------------------
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>reverse_2005
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----GGCGTACAACTCCAACCTCA--------------------------------------------------------
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>forward_463
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-------------------------------------------CAGCCGACCAGGATTCAAGT-----------------
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>reverse_2013
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------------ACTCCAACCTCATCCGCAAG------------------------------------------------
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>forward_770
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------------------------------ATACAGCGGCCTTTTCGTCA------------------------------
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>reverse_2663
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----------------------CGCTCAGGGATAGCCATAGC--------------------------------------
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>forward_2024
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----GGCGTACAACTCCAACCTCA--------------------------------------------------------
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>reverse_3395
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----------------------------------CATGTCACATGGGCTGAGGT--------------------------
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