>input_sequence_45680
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---------------------------------------------ATGGCTCGAGACTTTGATACATACATGAAGGGGTA
CCAGAGGTGCAAGCGCCCTTGGGAGTGTTCAGTTAAAGATCTAGGCGTCAGGCATATCGATTTCGATGAAAAAAGCATGA
GGTTTTTTGAGGGCAAATACACCATGGGACCAATCATATCTGACTGTCTCATTGAGAAGTTCCTAAACAGATCACAGTTT
GAGTCCTATTCTCTTTTGAGGAACTTTAGGCATTCAAATGTTGTGGCTGTCCAAAACTTCTATGATGTGTCAGGCTATCC
CAGGTTTGTATTATCTTGGGTGGACGGAAGCTTAACAGCATGGATGAAAAAGGATGGCGCAGGCATAATGTTTAAATCAA
ATATGAAGGGAAGCATTCCAACAGGAGCACTAAGACAGACCCTCCTGTGAGCCCTCAATCCTCATACTAGTTTTTTCGCT
TGTTTCATCTGAACTTGTCGTTTTTGGTTGATGTTGGTGTTGGGCTGGGAGGGGGCAGGTTTTGCTGGTCTGATCTAACT
TCTATCTTGATTGTATATTTTGTATGCAGTGACCTCTGTAGCGGACTTGAGCATTTACTGGCTGAGCAATTGTACCCTGC
TGAGATTGATTTAAAAGACATGTACGTGCGCCAAGTGGGCCACAAGGGAATTGTCCAAATCCTCATTAATAAAGGTACTC
GACCAACTTTTTATTTTGTCAAACGACCAACTTATTTAAGGAAGAACTGCAGCCCATTCCCTTTTGCTAACATTTAAATG
TATGGATGCAGTTGAGAGATTGTCAGGTCTTGATGCAACAAAAAGGAAGGCAAAGTTATGGGCTGGTCTGAGAAAAGCTC
TTCATGAGATATATAAGGAGGCTCCACGCGCTGTTAACCCTGTTGCATTGAGGTTCATCAACTATGTTGGAGTTACAGAC
AGCACCCGACTACAGAGGTTCCCTGACAAATGGGACTACAACATGAAGGCAAGGTACTTACTATCAGTTATGTCAGAAGA
TATTGCTGTGGTAAGACCTAAACTGCATGTCCAAGGTGTGCCTATAATAAATTGGCCAAAAACTCCCAATGGCAACCGTC
TTCGGGCACCATTTCAAGAGGCGTTTGACCATCAGGCCGCACGTGGAACAATCTATGACGTAGAAGATCCCTATGACTAC
ATAAGATTGTGCAAGGATGTTATCAAACATTGGAACGTCATGCCAGCTTCTGTTAAGGTACGCATGGAAGTGTGTAATGT
GAGGTGTGGTTTTCATTTCCTTTTTATCTGACAATTGATAGCTGAAACACAGGGCGAGTGTTCCACCTGGGAGAAGTTCA
TTGACAAGATCGAGAAATGGGATCAGATGATTTGGTGCACTCTGTACGAGGCTACTGCATGTAAGAGCTATTTTTCTACG
ACACGTGCATGCCTTAAAATGACATGTTCCTTACACATTGCAAACTTTATTAGCATCATTATATGCTAATGCTTATTGTT
TTCATGTATGCAACTCCGTAGCCTTGAAACTGGATTCAGAACAGGGAATTGCTTATACAAACTAAAACAACCTAGAGTAG
ATTTTGATTGCAGCTGCGAAATTTAGGAGCCACTGATTGATCATGATCTTAGTTAGCAATCGTAGTAAACTATGACAAGT
TTATATGCAAATGAAATGTACCTTGCACTTTCAGGA--------------------------------------------
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>chr2D_1_TraesCS2D01G436500
TCTTTGGGGCTAACGGATGCAGGCGTGTAGCCCATTTTGCTCTGGTAGATCATGCATAATTTCATCCCCCTTTTTTTTTC
TTTTTTTTAGTAGTTGTATGAGACATTGTGGTTTCTTTTAGTCGAAATTGGAGAGGGAGCTCTTTTATC--AAAAAAAAA
GTTTGAGGTACAAGCTCAGGAGAGTGCAAGAGCCAAATTTGATGACCAGCGTTAGTAGAGCTTGGTTTGGAAAAAAAATC
TCTGGGCCCAAATGACAGTCAATGATAAATAAAAGAGATAAAAAAAATTGCTTGTCGGGCTGTTACGCGCAGCCACACAC
ACAAGACAGACCCACTCAGATCCCCTGTTTTGCCTAAAAAAAAAACTCAGATCCCCTGTTTCTCGCTCCCCTGTTTCACC
--CTCGAATAAGGAAATGCTCATTCAGGTTCCCACCTGACCACCTCACGGGCCAAAACCCTCTCCCCCTTCCTCGCCGTC
TGCCTCTCCGGGGACGACGGCACGACGCGGTACGGGCTGCGTCGCCAGGATCTGCTACCTCGTCGAGTCCGCTTCTCCCC
CGCCATACGAGTCTTTACCTCCGGCGACGTCGTACGCGGCCTGCTGCGCGAGCGATTCGGCCACCTTGGGGGTTAGGTTT
TCCCCACATCCGTCAAGGTACGAACCACGAAATGGCGACCTTTTTTCTTGGGG-GTCTGTATGCGATTGAGGGTTAGGAT
CTCTATTTGTCATCGCCCGTGCGGCCATGCTTTAGCGTGCCTGCGGTGGCGACCAGGGTACATACCCATGCCATGCCTGC
GCTGGGTTCGTTGTAGATTGGGGGCTCCGATGTTTCATGCCGACGTTTTATTGATTGCATATCTTCATGATAATGCACCA
TAGGCCTGCAATTTGTTTGTTATAGATGAGAAAGGGGGAAGAAGAAGAGATAGGAGAGATGCTGTTTATGCCAGATTTGA
CTTAAGTTGTGCTGTTTTTTGTTGCATGTACTGACTACTGAAGCTATGGCTCGAGACTTTGATACATACATGAAGGGGTA
CCAGAGGTGCAAGCGCCCTTGGGAGTGTTCAGTTAAAGATCTAGGCGTCAGGCATATCGATTTCGATGAAAAAAGCATGA
GGTTTTTTGAGGGCAAATACACCATGGGACCAATCATATCTGACTGTCTCATTGAGAAGTTCCTAAACAGATCACAGTTT
GAGTCCTATTCTCTTTTGAGGAACTTTAGGCATTCAAATGTTGTGGCTGTCCAAAACTTCTATGATGTGTCAGGCTATCC
CAGGTTTGTATTATCTTGGGTGGACGGAAGCTTAACAGCATGGATGAAAAAGGATGGCGCAGGCATAATGTTTAAATCAA
ATATGAAGGGAAGCATTCCAACAGGAGCACTAAGACAGACCCTCCTGTGAGCCCTCAATCCTCATACTAGTTTTTTCGCT
TGTTTCATCTGAACTTGTCGTTTTTGGTTGATGTTGGTGTTGGGCTGGGAGGGGGCAGGTTTTGCTGGTCTGATCTAACT
TCTATCTTGATTGTATATTTTGTATGCAGTGACCTCTGTAGCGGACTTGAGCATTTACTGGCTGAGCAATTGTACCCTGC
TGAGATTGATTTAAAAGACATGTACGTGCGCCAAGTGGGCCACAAGGGAATTGTCCAAATCCTCATTAATAAAGGTACTC
GACCAACTTTTTATTTTGTCAAACGACCAACTTATTTAAGGAAGAACTGCAGCCCATTCCCTTTTGCTAACATTTAAATG
TATGGATGCAGTTGAGAGATTGTCAGGTCTTGATGCAACAAAAAGGAAGGCAAAGTTATGGGCTGGTCTGAGAAAAGCTC
TTCATGAGATATATAAGGAGGCTCCACGCGCTGTTAACCCTGTTGCATTGAGGTTCATCAACTATGTTGGAGTTACAGAC
AGCACCCGACTACAGAGGTTCCCTGACAAATGGGACTACAACATGAAGGCAAGGTACTTACTATCAGTTATGTCAGAAGA
TATTGCTGTGGTAAGACCTAAACTGCATGTCCAAGGTGTGCCTATAATAAATTGGCCAAAAACTCCCAATGGCAACCGTC
TTCGGGCACCATTTCAAGAGGCGTTTGACCATCAGGCCGCACGTGGAACAATCTATGACGTAGAAGATCCCTATGACTAC
ATAAGATTGTGCAAGGATGTTATCAAACATTGGAACGTCATGCCAGCTTCTGTTAAGGTACGCATGGAAGTGTGTAATGT
GAGGTGTGGTTTTCATTTCCTTTTTATCTGACAATTGATAGCTGAAACACAGGGCGAGTGTTCCACCTGGGAGAAGTTCA
TTGACAAGATCGAGAAATGGGATCAGATGATTTGGTGCACTCTGTACGAGGCTACTGCATGTAAGAGCTATTTTTCTACG
ACACGTGCATGCCTTAAAATGACATGTTCCTTACACATTGCAAACTTTATTAGCATCATTATATGCTAATGCTTATTGTT
TTCATGTATGCAACTCCGTAGCCTTGAAACTGGATTCAGAACAGGGAATTGCTTATACAAACTAAAACAACCTAGAGTAG
ATTTTGATTGCAGCTGCGAAATTTAGGAGCCACTGATTGATCATGATCTTAGTTAGCAATCGTAGTAAACTATGACAAGT
TTATATGCAAATGAAATGTACCTTGCACTTTCAGGAATCCTGAGGATGTATGGTAACAACGAGACAAACTAGCTTGACTT
CGCTTCTGGAAACTGAAGACGTGATGAATGCTAGACACTGGCAGCAAAACCTGGTGATTTGTATTCTCATGTAACTTGTA
TGTTGAGGCTTGCTAGTTTGTTTTAGTGTCCCCTTCTTGGAGTTGTTCAATACTTGTGGTCAAGAGGCTGAAGATGTGGC
ATGTAATCATCACTTGTTCTAATACTTCTTGGAGTTGAATGTTTTGGTAACAGATTGTCAGGTCGGCTGACTGTTGAAGG
ATCACATAACTGCATGTTCTGTTTCCTGTTGATGTTTGTGTGAGTGCCAAATGAGAAGGCAACACTCTGACCATTGAGTT
TTGACTGGGCATCATATTACACACGGTAATATAATATGCCCAAAAGGCATGGTTTGGCAGTGTCTATGCATGTTTTTTAG
AATGTTGTGAGGCGTTTCAGAGATATATGTGGTGTCGATATAACGATGGATCTTACTGGAGTAGTGTCTGTTTTTTATCC
TTCCACCCTTACTGGAGTATATGATCTATGCAAGAATGAAGACAGTGTGGCGACATCTCGAAGCAAAACCTATTCTGCAT
GCAATCTTGTCTCACACTGCAACAACCGAACAATCTGGCATGGTCAGACATAAGTTGCTCACATCACAATCTAGCCCCAA
GCGCTGCACAGTCGACGTGGTTGACTTCACTTGCCGGCCACCTCCACACTTGCATCTGCTATCTTGCACCCTCCACGAAT
GTAGCGCATGGTTTGAAGAATTGAAGCCCTCCTAAATCCCCAAATCCTGAAATGAATAGCGCGTGGGTTGAAGCCACCCA
CGCGGTTTTATAAAGAAGCTAGTCTGACAGCGAATATTGTCTTTGGAGGCCGAGCTCCATGGAGCTCGGTTTTGAAAAAA
AATGAATTTCATCAAATTTCATATTCTCCGTGTTTCAAAAAATTCTAAAAAAAACACAGACATGCATGAAGGCACT
>chr2A_1
TCTTTGGGGCTAACGGATGCAGGCGTGTAGCCCATTTTGCTCTGGTAGATCATGCATAATTTCATCCCCTTTTTTTTCT-
TTTGTTTTAGTAGTTGTATGAGACATTGTGGTTTCTTTTAGTCGAAATTGGAGAGGGAGCTCTCTTTATCAAAAAAAAAA
GTTTGGGGTACAAGCTCGGGAGAGTGCAAGAGCCAAATTTGATGACCAGCGTTAGTAGAGCTTGGTTTGGAAAAAAAATC
TCTGGGCCCAAATGACAGTCAATGATAAAAGAGAT-----AAAAAAATTGCTTGTCGGACTGTTACGCGCAGCCACCCAC
ACAAGACAGACCCACTCAGATCCCCTGTTTTGCCTAAAAAAAAAACTCAGACCCCCTGTTTCACGCTCCCCTGTTTCACC
CTCTCGAATAAGGAAATGCTCATTCAGGTTCCCACCTGACCACCTCACGGGCCAAAACCCTCTCCCCCTTCCTCGCTGTC
TGCCTCTCCGGGGACGACGGCACGACGCGGTACGGGCTGCGTCGCCAGGATCTGCTACCTCGTCGAGTCCGCTTCTCCCC
CGCCATACAAGTCTTTACCTCCGGCGACGGCGTACGCGGCCTGCTGCGCGAGCGATTCGGCCACCTTAGGGGTTAGGTTT
TCCCCACATCCGTCAAGGTACGAACCACGAAATGGCGACCTTTTTTTTTGGGGAGTCTGTATGCGATTGAGGGGTAGGAT
CTCTATTTGTCATCGCCCGTGCGGCCATGCTTTAGCGTGCCTGCGGTGGCGACCAGGGTACATACCCATGCCCTGCCTGC
GCTGGGTTCGTTGTAGATTGGGGGCTCCGATGTTTCATGCCGACTTTTTATTGATTGCATATCTTCATGATAATGCACCA
TAGGCCTGCAATTTGTTTGTTATAGATGAGAAAGGGGGAAGAAGAAGAGATAGGAGAGATGCTGTTTATGCCAGATTTGA
CTTAAGTTGTGCTGTTTTTTGTTGCATGTACTGACTACTGAAGCTATGGCTCGAGACTTTGATACATACATGAAGGGGTA
CCAGAGGTGCAAGCGCCCTTGGGAGTGTTCAGTTAAAGATCTAGGCGTCAAGCATATCGATTTCGATAAAAAAAGCATGA
GGTTTTTTGAGGGCAAATACACCATGGGACCAATCATATCTGACTGTCTCATTGAGAAGTTCCTAAACAGATCACAGTTT
GAGTCCTATTCTCTTTTGAGGAACTTTAGGCATTCAAATGTTGTGCCTGTCCAAAACTTCTATGATGTGTCAGGCTATCC
CAGGTTTGTATTGTCTTGGGTGGACGGAAGCTTAACAGCATGGATGAAAAAGGATGGCGCAGGCATAATGTTTAAATCAA
ATATGAAGGGAAGCATTCCAACAGGAGCACTACGACAGACCATCCTGTGAGCCCTCAATCCTCATACTAGTTTTTTCGCT
TGTTTCATCTGAACTTGTCGTTTTTGGTTGATGTTGGTGTTGGGCTGGGAGGGGGCAGGTTTTGCTGGTCTGATCTAACT
TCTATCTTGATTGTATATTTTGTATGCAGTGACCTCTGTAGCGGACTTGAGCATTTACTGGCTGAGCAATTGTACCCTGC
TGAGATTGATTTAAAAGACATGTACGTGCGCCAAGTGGGCCACAAGGGAATTGTCCAAATCCTCATTAATAAAGGTACTC
GACCAACTTTTTATTTTGTCAAACGACCAACTTATTTAAGGAAGAACTGCAGCCCATTCCCTTTTGCTAACATTTAAATG
TATGGACGCAGTTGAGAGATTGTCAGGTCTTGATGCAACAAAAAGGAAGGCAAAGTTATGGGCTGGTCTGAGAAAAGCTC
TTCATGAGATATATAAGGAGGCTCCACGCGCTGTTAACCCTGTTGCATTGAGGTTCATCAACTATGTTGGAGTGACAGAC
AGCACCCGACTACAGAGGTTCCCTGACAAATGGGACTACAACATGAAGGCAAGGTACTTACTATCAGTTATGTCAGAAGA
TATTGCTGTGGTAAGACCTAAACTGCATGTCTAAGGTGTGCCTATAATAAATTGGCCAGAAACTCCCAATGGCAACCGTC
TTCGGGCACCATTTCAAGAGGCGTTTGATCATCAGGCCGCACGTGGAACAATCTATGACGTAGAAGATCCCTATGACTAC
ATAAGATTGTGCAAGGATGTTATCAAACATTGGAACGTCATGCCAGCTTCTGTTAAGGTACGCATGGAAGTGTGTAATGT
GAGGTGTGGTTTTCATTTCCTTTTTATCTGACAATTGATAGCTGAAACACAGGGCGAGTGTTCCACCTGGGAGAAGTTCA
TTGACAAGATCGAGAAATGGGATCAGATGATTTGGTGCACTCTGTACGAGGCTACTGCATGTAAGAGCTATTTTTCTACG
ACACGTGCATGCCTTAAAATGACATGTTCCTTACACATTGCAAACTTTATTAGCATCATTATATGCTAATGCTTATTGTT
TTCGTGTATGCAACTCTGTAGCCTTGAAACTGGATTCAGAACAGGGAATTGCTTATACAAACTGAAACAACCTAGAGTAG
ATTTTGATTGCAGCTGCGAAATTTAGGAGCCACTGATTGATCATGATCTTAGTTAGCGATCGTAGTAAACTATAACAAGT
TTATATGCAAATGAAATGTACCTTGCACTTTCAGGAATCCTGAGGATGTATGGCAACAACGAGACAAACTAGCTTGACTT
CGCTTCTGGAAACTGAAGACGTGATGAATGCTAGACACTGGCAGCAAAACCTGGTGATTTGTATTCTCATGTAACTTGTA
TGTTGAGGCTTGCTAGTTTGTTTTAGTGTCCCCTTCTTGGAGTTGTTGAATACTTGTGGTCAAGAGGCTGAAGACGTGGC
ATGTAATCATCACTTGTTCTAATACTTCTTGGAGTTGAATGTTTTGGTAACAGATTGTCAGGTCGGCTGACTGTTGAAGG
ATCACATAACTGCATGTTCTGTTTCCTGTTGATGTTTGTGTGAGTGCCAAATGAGAAGGCAACACTCTGACCATTGAGTT
TTGACTGGGCATCATATTACACACGGTAATATAATATGCCCAAAAGGCATGGTTTGGCAGTGTCTATGCATGTTTTTTAG
AATGTTGTGAGGCGTTTCAGAGATATATGTGGTGTCGATATAACGATGGATCTTACTGGAGTAGTGTCTGTTTTTTATCC
TTCCACCCTTACTGGAGTATATGATCTATGCAAGAATGAAAACAGTGTGGCGACATCTCGAAGCAAAACCTATTCTGCAT
GCAATCTTGTCTCACACTGCAACAACCGAACAATCTGGCATGGTCAGATATAAGTTGCTCACATCACAATCTAGCCCCAA
GCGCTGCACAGTCGACGTGGTTGACTTCACTTGCCGGCCACCTCCACACTTGCATCTGCTATCTTGCACCCTCCACGAAT
GTAGCGCATGGTTTGAAGAATTGAAGCCCTCCTAAATCCCCAAATCCTGAAATGAATAGCGCGTGGGTTGAAGCCACTCA
CGCGGTTTTATAAAGAAGCTAGTCTGACAGCGAATATTGTCTTTGGAGGCCGAGCTCCATGGAGCTCGGTTTTGAAAAAA
ATTAAATTTCGTCAAATTTCATATTCTCCGTGTTTCAAAAAATTCAAAAAAAAACACAGACATGCATGAAGGCACT
>SNPs
---------------------------------------------------------------------S-------S-S
---S-----------------------------------------------------------S--SSS-----------
-----S-----------S--------------------------------------------------------------
-----------------------------SS-S-SSSSSS------------------S-----------------S---
---------------------------------------------------S----------S-----------------
----------------------------------------------------------------------------S---
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--------S--------------------S-------------------------------------S------------
----------------------------------------------S--------------------------S------
------------------------------------------------------------------------S-------
--------------------------------------------S-----------------------------------
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--------------------------------------------------S----------------S------------
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---------------------------------------------S----------------------------------
------------S-------------------------------------------------------------------
--------------------------------S--------S--------------------------------------
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------S-------------------------------------------------------------------------
-------------------------------------------------------------------------S------
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-------------------------------S--------------------------S---------------------
----------------------------S---------------------------------------------------
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---S------------S----------------------------------------------S----------------
---------------------------------------------------------S---------------S------
-----------------------------------------------------S--------------------------
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----------------------------------------S---------------------------------------
------------------------------------------------S-------------------------------
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-S-S------S----------------------------------S------------------------------
>forward_845
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-------------------------TCCGATGTTTCATGCCGACG-----------------------------------
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>reverse_2059
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----------------------------------------------------------AAAACTCCCAATGGCAACCG--
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>forward_1402
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---------------------CAGGAGCACTAAGACAGACCC--------------------------------------
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>reverse_3241
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----------------------------------------GACAGTGTGGCGACATCTCG--------------------
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