>input_sequence_45652
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CTATATAAGTAGCCGCATGCTTGCACGTCTCATGCATTCA
CAGAGC----CTAGCTAGCTACCTGCCAAGAGCTGCCCTGAACCCTAGCCAGTAGTAGCTTCCCGGAACACCGTCACCAG
TAGCTCGGTCTCACCTAGGTG----GGGAACAGTGACACAGAGCAGCTAGCTGCCTAGCCTA-GCCAATGGCGAGCAAGC
GGGCCACCACGCGGGAGCTCCGGGCGATGTACGACGACGAGCCCTCCTCCATGTCCCTCGAGCTCTTCGGCTACCATGGC
GTGGTCGTCGACGGTGACGATGAAGACGACGACACTGCCACCGCCCTGCCCCAGCTCTCCTTCGTCGACAACTTCAAAGG
TGGGTGCGGGTCG---GC---GGCGGACTACTACAGCTGGGCGTACAACGCCTCCGGCGGGACGCCGGGCGCCTCCTCCA
GCTCCACCTCGTCGGTGCTCAGCTTTGAGCATGCCGGCGGTGCCGGTCATCAGCTGGCTTATAATTCCGGCACAGGCGAC
GATGACTGCGCGCTCTGGATGGACAGCATGGCCG---ATCATCAGCACGGCGCGGCCAGGTTTGGGTTCATGAACCCAGG
GTCGGCCGATGTCGTCCCAGAAAGCCAGGAGAGCAGCATCAAGCAGCCGGCCAAGTCTGCGCAGAAGCGCTCGAGCTCGG
TAAGTACCTACATCAAATTTCTCCTCCCTTGCATCACGACACATTTCTG------------AAACTTTGCATCTAGTCAA
TTTGAGTGGGAAAAAAAACTGATAAGTTTCCTTCTGTTTAATAAGGGTGGTGAGGCGCAAGCAGCGGCGAAGAAGCAGTG
TGGAGGAGGCAGGAAGAGCAAGGCCAAAGTTGTCCCTACCAAGGATCCTCAGAGCGCTGTTGCAAAGGTAG----AAT--
CAGCATGAG-TCAATTTCTCCCTATTGCTGTGGTG-CAAGATTCTTTGCACTGCAAGAAAGTTGTTTCGA-CGAAGCCGA
ACTAATCCATGTTACCCGATCGATCATGGATCTTTAGGTCCGAAGAGAGCGCATCAGTGAGAGGCTCAAAGTTCTGCAGG
ATCTTGTACCCAACGGCACGAAGGTGTGTACCATGACTTCTTCT-------------CATGCTTCAGCACGGTTTTTGTG
TGAAAAAATGACC------TGGTCATTAGTTGCTAATTTTCTGAATGGAACCAACTCCTGTAGGTGGACATGGTCACCAT
GCTCGAGAAGGCAATCACCTATGTCAAGTTCCTGCAGCTGCAAGTCAAGGTACGCGA-CGATCGGTCATCGATGCGTCGA
CTACTCTTTCGACCCAATTCACATCTATGAACTACATACAGTCTCATGTCGGATCTATGAATTATAACCCGGTTCGCGCA
TATTCGGTGTGTGTGC--GCAGGTGTTGGCGACCGACGAGTTCTGGCCGGTGCAAGGAGGGAAGGCGCCGGAGCTGTCCC
AAGTGAAGACCGCGCTGGACGCCATCCTGTCTTCCCAGCAGCAACCCTAGGCCATGGATGCATGCATCCATGTTGAATTT
TTAT-CCAAGTTTTAGAT-GATCGCGGCGGCACGTGTAAGATCAGAAAAGAAAAGAGAGCACAAGCTCTGGAAAAATAC-
------------------ATGGCAGATCATGTTTTT-GCTTCACTCCTTTTA---------GATCAATTCTCCTTGTTTT
TTATGTGATCGGGATTTGAAGTTCTGAGCACTGTAACTAGTCCA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>chr3B_1_TraesCS3B01G010400
CCCCGGCACAAGATATTCTTTTAAGGTAC---------------------------------------------------
--------------------------------GTGTGAATAACAAACGATTTCCCATGTGAGTAGGATACGC--------
ATGGATGCTTCCTCTCAGTTTA--------CTGCATTTGGTCCAGTACTTTTGAGCCACGTTTACGATGACTTGGTCTGG
AGAGCATATATGTATACAATTCTACATTGGTAC---CTGGTTTCGTTAAGTCTGCGGCGAATTGCTGCGTGCAACTGTTG
GTGATCTGCATTAGTCGCTAATGAAGGTAAAGTTCATGTCAA----------ATATATTACAGTGAACACAAGAAACTAG
AATTTGCTTCCATTAATTGGAAGTAGTAGGA-GATAGTTTCTTGTTTTTGACATAACTG------------TGC------
TAGCAGGTGCCTAAACC-TGACCAATATTTTGTAACCTAATAAATATTTAGAAGAAATATGTACTCTTGTACGGCGTACG
GCTGATCA-------ATATACCAGGGAAATAATTGAAGTTACCCAATAT--AAGAACCTACACATATTTTTGCTTGGCTA
CCTTACACATGGGC----------TAGCTACCTTACACATGGCAATGGAGGTTGAGAGGGAGGCTGCATTTATGGGAGCA
TGACATCCCAGCTAATTATTTGCATTGCAGTTCCCCAGCAAGCTTGTTTCATGCATGCATGCTAAGCCTGAACTGAATTG
AATACAAGCTTGTCACAACGTCATCACCACCTAGCTCCCCTCCCCCTTGT---TTAACTAATGTAAACAGCATCAACTTG
GCCTTGAATGCCACATGAAGAGAGAGCCCGGATGTGGAGGAGTGTAGATTATGTGGCACTGGAACATGGGTGGAGGGG--
---ATTAGTTCCACTTCTACTACTACTACTACTACTTAATTACCTTACTTAGCTGAGCATAACAAGGGAATTAGTCATGG
GTCCACTGCTGTCTGTCTCCCTCTTAGCACTTGACCCC-ATATTCCACTGACAGCTCAAGACCTTGCTGGCTCATTAAGC
TCTGCACACTAGCGCCTACTCGATTAAGAAACCCCTCACTCTATATAAGTAGCCGCATGCTTGCACGTCTCATGCATTCA
CAGAGC----CTAGCTAGCTACCTGCCAAGAGCTGCCCTGAACCCTAGCCAGTAGTAGCTTCCCGGAACACCGTCACCAG
TAGCTCGGTCTCACCTAGGTG----GGGAACAGTGACACAGAGCAGCTAGCTGCCTAGCCTA-GCCAATGGCGAGCAAGC
GGGCCACCACGCGGGAGCTCCGGGCGATGTACGACGACGAGCCCTCCTCCATGTCCCTCGAGCTCTTCGGCTACCATGGC
GTGGTCGTCGACGGTGACGATGAAGACGACGACACTGCCACCGCCCTGCCCCAGCTCTCCTTCGTCGACAACTTCAAAGG
TGGGTGCGGGTCG---GC---GGCGGACTACTACAGCTGGGCGTACAACGCCTCCGGCGGGACGCCGGGCGCCTCCTCCA
GCTCCACCTCGTCGGTGCTCAGCTTTGAGCATGCCGGCGGTGCCGGTCATCAGCTGGCTTATAATTCCGGCACAGGCGAC
GATGACTGCGCGCTCTGGATGGACAGCATGGCCG---ATCATCAGCACGGCGCGGCCAGGTTTGGGTTCATGAACCCAGG
GTCGGCCGATGTCGTCCCAGAAAGCCAGGAGAGCAGCATCAAGCAGCCGGCCAAGTCTGCGCAGAAGCGCTCGAGCTCGG
TAAGTACCTACATCAAATTTCTCCTCCCTTGCATCACGACACATTTCTG------------AAACTTTGCATCTAGTCAA
TTTGAGTGGGAAAAAAAACTGATAAGTTTCCTTCTGTTTAATAAGGGTGGTGAGGCGCAAGCAGCGGCGAAGAAGCAGTG
TGGAGGAGGCAGGAAGAGCAAGGCCAAAGTTGTCCCTACCAAGGATCCTCAGAGCGCTGTTGCAAAGGTAG----AAT--
CAGCATGAG-TCAATTTCTCCCTATTGCTGTGGTG-CAAGATTCTTTGCACTGCAAGAAAGTTGTTTCGA-CGAAGCCGA
ACTAATCCATGTTACCCGATCGATCATGGATCTTTAGGTCCGAAGAGAGCGCATCAGTGAGAGGCTCAAAGTTCTGCAGG
ATCTTGTACCCAACGGCACGAAGGTGTGTACCATGACTTCTTCT-------------CATGCTTCAGCACGGTTTTTGTG
TGAAAAAATGACC------TGGTCATTAGTTGCTAATTTTCTGAATGGAACCAACTCCTGTAGGTGGACATGGTCACCAT
GCTCGAGAAGGCAATCACCTATGTCAAGTTCCTGCAGCTGCAAGTCAAGGTACGCGA-CGATCGGTCATCGATGCGTCGA
CTACTCTTTCGACCCAATTCACATCTATGAACTACATACAGTCTCATGTCGGATCTATGAATTATAACCCGGTTCGCGCA
TATTCGGTGTGTGTGC--GCAGGTGTTGGCGACCGACGAGTTCTGGCCGGTGCAAGGAGGGAAGGCGCCGGAGCTGTCCC
AAGTGAAGACCGCGCTGGACGCCATCCTGTCTTCCCAGCAGCAACCCTAGGCCATGGATGCATGCATCCATGTTGAATTT
TTAT-CCAAGTTTTAGAT-GATCGCGGCGGCACGTGTAAGATCAGAAAAGAAAAGAGAGCACAAGCTCTGGAAAAATAC-
------------------ATGGCAGATCATGTTTTT-GCTTCACTCCTTTTA---------GATCAATTCTCCTTGTTTT
TTATGTGATCGGGATTTGAAGTTCTGAGCACTGTAACTAGTCCAATAAAACC-------TAGATGAACATGATGTTACAC
AGCTTAGTGAAACCTAGACAGGGTCCCGCCATCGCGTGCAATGAAAATAAAGTTGTTGTTTCTATTGAAACATAAAACCA
TCTTCTTCTTTTGCAGGGAACATAAGATCCTCCCCTTGATTTATACAAGAACAACGCACGGTCGGATTCAGTGAAATGTT
---ATCTTGAGTTCTTC-------------------------------GAATTAGAAAACTGAGCTATGGGGATTTAGAT
CAAAGGGTATTTGACACCACATGGA------------------------------------AAACAAATGAATTGCACAA
AGAGGCTTGA---GTGCAAACCAATCCTCAGGAAAGAAAATG--TCCCTAAGGATTCATTCGCATTCTCTAAAAAAAATT
CCTTTGAAATTCCAAGGATCCAAACTAAACCTCAGGGGTTTGGATCCAGAG---CTCCTTTCAATCAAAGGAACCCTAAG
TCCTGAAATGGCAACAGGGAGCCTTGCTGAGATGAAAGTAGTTGTTTC------------------------ATTAATTT
GAACCAAAGATCAAAGGGATACAAAGTTTTTTACAAGTTTGAGATGAAAGCGGTTAAAATCAATTCCGCGTCAACTGGAG
TTTGAGATGAAAGCAGTTAAAATCAATTCCGCGTCAACTGGGCGGCGGGCCTGAGTAGCATCCATCCATCCATGAATCGC
GCAAACCTTATTATCTC----------------------ACCGGGTCTAGATCTGAGGTTGACAAATGAGCATTTGTCAG
GGATCTTAGTTAACTTTTTTCGCAAACAAAAAGGGATCTTAGTTATTAACAAAGTAAATCGCCACAGAATTTGTACAGAG
A---------------------------------TTTTCTGCTACCAACATTTTCGCAAAC------------ATCGGAG
ATCGTGTGGCTACTTGTGTTTTCTTCTCTCCAGGGTCAAACAGTTTTGTAATGCAACTGGAATTAATTGCAGTTAGTGCG
TGATTAGAGGAGGCTCGAGACAACTCCTTAGGATGCTGCTGACGATGATGCCATCATGTCTCAGTACAGCGGGGACACGA
ATTTCTCATCAACAAAAACA--
>chr3B_1
CCCCGGCACAAGATATTCTTTTAAGGTAC---------------------------------------------------
--------------------------------GTGTGAATAACAAACGATTTCCCATGTGAGTAGGATACGC--------
ATGGATGCTTCCTCTCAGTTTA--------CTGCATTTGGTCCAGTACTTTTGAGCCACGTTTACGATGACTTGGTCTGG
AGAGCATATATGTATACAATTCTACATTGGTAC---CTGGTTTCGTTAAGTCTGCGGCGAATTGCTGCGTGCAACTGTTG
GTGATCTGCATTAGTCGCTAATGAAGGTAAAGTTCATGTCAA----------ATATATTACAGTGAACACAAGAAACTAG
AATCTGCTTCCATTAATTGGAAGTAGTAGGA-GATAGTTTCTTGTTTTTGACATAACTG------------TGC------
TAGCAGGTGCCTAAACC-TGACCAATATTTTGTAACCTAATAAATATTTAGAAGAAATATGTACTCTTGTACGGCGTACG
GCTGATCA-------ATATACCAGGGAAATAATTGAAGTTACCCAATAT--AAGAACCTACACATATTTTTGCTTGGCTA
CCTTACACATGGGC----------TAGCTACCTTACACATGGCAATGGAGGTTGAGAGGGAGGCTGCATTTATGGGAGCA
TGACATCCCAGCTAATTATTTGCATTGCAGTTCCCCAGCAAGCTTGTTTCATGCATGCATGCTAAGCCTGAACTGAATTG
AATACAAGCTTGTCACAACGTCATCACCACCTAGCTCCCCTCCCCCTTGT---TTAACTAATGTAAACAGCATCAACTTG
GCCTTGAATGCCACATGAAGAGAGAGCCCGGATGTGGAGGAGTGTAGATTATGTGGCACTGGAACATGGGTGGAGGGG--
---ATTAGTTCCACTTCTACTACTACTACTACTACTTAATTACCTTACTTAGCTGAGCATAACAAGGGAATTAGTCATGG
GTCCACTGCTGTCTGTCTCCCTCTTAGCACTTGACCCC-ATATTCCACTGACAGCTCAAGACCTTGCTGGCTCATTAAGC
TCTGCACACTAGCGCCTACTCGATTAAGAAACCCCTCACTCTATATAAGTAGCCGCATGCTTGCACGTCTCATGCATTCA
CAGAGC----CTAGCTAGCTACCTGCCAAGAGCTGCCCTGAACCCTAGCCAGTAGTAGCTTCCCGGAACACCGTCACCAG
TAGCTCGGTCTCACCTAGGTG----GGGAACAGTGACACAGAGCAGCTAGCTGCCTAGCCTA-GCCAATGGCGAGCAAGC
GGGCCACCACGCGGGAGCTCCGGGCGATGTACGACGACGAGCCCTCCTCCATGTCCCTCGAGCTCTTCGGCTACCATGGC
GTGGTCGTCGACGGTGACGATGAAGACGACGACACTGCCACCGCCCTGCCCCAGCTCTCCTTCGTCGACAACTTCAAAGG
TGGGTGCGGGTCG---GC---GGCGGACTACTACAGCTGGGCGTACAACGCCTCCGGCGGGACGCCGGGCGCCTCCTCCA
GCTCCACCTCGTCGGTGCTCAGCTTTGAGCATGCCGGCGGTGCCGGTCATCAGCTGGCTTATAATTCCGGCACAGGCGAC
GATGACTGCGCGCTCTGGATGGACAGCATGGCCG---ATCATCAGCACGGCGCGGCCAGGTTTGGGTTCATGAACCCAGG
GTCGGCCGATGTCGTCCCAGAAATCCAGGAGAGCAGCATCAAGCAGCCGGCCAAGTCTGCGCAGAAGCGCTCGAGCTCGG
TAAGTACCTACATCAAATTTCTCCTCCCTTGCATCACGACACATTTCTG------------AAACTTTGCATCTAGTCAA
TTTGAGTGGGAAAAAAAACTGATAAGTTTCCTTCTGTTTAATAAGGGTGGTGAGGCGCAAGCAGCGGCGAAGAAGCAGTG
TGGAGGAGGCAGGAAGAGCAAGGCCAAAGTTGTCCCTACCAAGGATCCTCAGAGCGCTGTTGCAAAGGTAG----AAT--
CAGCATGAG-TCAATTTCTCCCTATTGCTGTGGTG-CAAGATTCTTTGCACTGCAAGAAAGTTGTTTCGA-CGAAGCCGA
ACTAATCCATGTTACCCGATCGATCATGGATCTTTAGGTCCGAAGAGAGCGCATCAGTGAGAGGCTCAAAGTTCTGCAGG
ATCTTGTACCCAACGGCACGAAGGTGTGTACCATGACTTCTTCT-------------CATGCTTCAGCACGGTTTTTGTG
TGAAAAAATGACC------TGGTCATTAGTTGCTAATTTTCTGAATGGAACCAACTCCTGTAGGTGGACATGGTCACCAT
GCTCGAGAAGGCAATCACCTATGTCAAGTTCCTGCAGCTGCAAGTCAAGGTACGCGA-CGATCGGTCATCGATGCGTCGA
CTACTCTTTCGACCCAATTCACATCTATGAACTACATACAGTCTCATGTCGGATCTATGAATTATAACCCGGTTCGCGCA
TATTCGGTGTGTGTGC--GCAGGTGTTGGCGACCGACGAGTTCTGGCCGGTGCAAGGAGGGAAGGCGCCGGTGCTGTCCC
AAGTGAAGACCGCGCTGGACGCCATCCTGTCTTCCCAGCAGCAACCCTAGGCCATGGATGCATGCATCCATGTTGAATTT
TTAT-CCAAGTTTTAGAT-GATCGCGGCGGCACGTGTAAGATCAGAAAAGAAAAGAGAGCACAAGCTCTGGAAAAATAC-
------------------ATGGCAGATCATGTTTTT-GCTTCACTCCTTTTA---------GATCAATTCTCCTTGTTTT
TTATGTGATCGGGATTTGAAGTTCTGAGCACTGTAACTAGTCCAATAAAACC-------TAGATGAACATGATGTTACAC
AGCTTAGTGAAACCTAGACAGGGTCCCGCCATCGCGTGCAATGAAAATAAAGTTGTTGTTTCTATTGAAACATAAAACCA
TCTTCTTCTTTTGCAGGGAACATAAGATCCTCCCCTTGATTTATACAAGAACAACGCACGGTCGGATTCAGTGAAATGTT
---ATCTTGAGTTCTTC-------------------------------GAATTAGAAAACTGAGCTATGGGGATTTAGAT
CAAAGGGTATTTGACACCACATGGA------------------------------------AAACAAATGAATTGTACAA
AGAGGCTTGA---GTGCAAACCAATCCTCAGGAAAGAAAATG--TCCCTAAGGATTCATTTGCATTCTCTAAAAAAAATT
CCTTTGAAATTCCAAGGATCCAAACTAAACCTCAGGGGTTTGGATCCAGAGCTCCTCCTTTCAATCAAAGGAACCCTAAG
TCCTGAAATGGCAACAGGGAGCCTTGCTGAGATGAAAGTAGTTGTTTC------------------------ATTAATTT
GAACCAAAGATCAAAGGGATACAAAGTTTTT-ACAAGTTTGAGATGAAAGCAGTTAAAATCAATTCCGCGTCAACTGGAG
TTTGAGATGAAAGCAGTTAAAATCAATTCCGCGTCAACTGGGCGGCGGGCCTGAGTAGCATCCATCCATCCATGAATCGC
GCAAACCTTATTATCTC----------------------ACCGGGTCTAGATCTGAGGTTGACAAATGAGCATTTGTCAG
GGATCTTAGTTAACTTTTTTCGCAAACAAAAAGGGATCTTAGTTATTAACAAAGTAAATCGCCACAGAATTTGTACAGAG
A---------------------------------TTTTCTGCTACCAACATTTTCGCAAAC------------ATCGGAG
ATCGTGCGGCTACTTGTGTTTTCTTCTCTCCAGGGTCAAACAGTTTTGTAATGCAACTGGAATTAATTGCAGTTAGTGCG
CGATTAGAGGAGGCTCGAGACAACTCCTTAGGATGCTGCTGATGATGATGCCATCATGTCTCAGTACAGTGGGGACACGA
ATTTCTCATCAACAAAAACA--
>chr3A_2
-CCCGGCACAAGATATTCTTTTAAGGTACTTCCTCCGTAAACTAATATAAGAGCGTTTAGAATACTAAAATAGTGATCTA
AACGCTCTTATATTAGTTTACAGAGGGAGTACGTGTGAATAACAAACGATTTCCCATGTGCGTAGGATATGCATGCATGG
ATGGATGCTTCCGCTCAGTTTACTGCATGTCTGCATTTGGTCCAGTAGTTTTGAGCCACGTTTGT---------------
--------------------------------------------------------------------------------
------------------TAATGAAGGTGAAGTTCGTGTCCATACAAAAAATATATATTACAGTGAACACAAGAAACTAT
AATTTGCTTCCAG----TGGAAGTAGTAGGA-GATAGTTTCTTGTTTTGGATGTAACCATTATTGGTGCTCTGC------
TAGCAGGTACCTAAACC-GGACCAATATTTTGTAACCT---AAATATATAGAAGAAATATGTACTCTCGTACGGCGTACG
GCTGATCA-------ATATACCAGGGAAATAATTGAAGCTACCCTAG----AAGAACCTACACATATTTTTGCTTGGCTA
CCTTACACATGGGCTAGCTAGCTACAGCTTAGCTAGCCATGGCAATGGAGGTTGAGAGG----CTGCATTTATGGGAGCA
TGACATCCCAGCTAATTATTTGCATTGCAGTTCCCCAGCAAGCTAGCTTGTTTCATGCATGCTAACCTTC-----AATTG
AATACAAGCTTGTCACAACGTCATCACCACCT---------------TGT---TTAACTAATGTAAACAGCATCAACTTG
GCCTTGAATGCCACGTGAAGAGAGAGCCCGGATGTGGAGGAGTGTAGATTATGTGGCACTGGAACATGGGGGGAGGGGCT
AGGGTTAGCTCCACTTCTACTG-------TACTACTTAATCACCTTACTTAGCTGAGCATAACAAGGGAATTAATCATGG
GTCCACTGCTGTCTGTCTCCCTCTTTGCACTTGACCCCTATATTCCACTGACAGCTCAAGACCTTGCTGGCTCATTAAGC
TC--CACACTAGCGCCTACTCGATTAAGAAACCGCTCACTCTATATAAGTAGCCGCATGCTTGCACGTCTCATGCATTCA
CAGAGCT----TAGCTAGCTAGCTGCCAAGAGCTGCCCTGAACCCTAGCTAGTAGTAGCTTCCCGGAACACCGTCACCAG
TAGCTCGATCTCACCTAGGTA----GGGAACAGTGACACAGAGCAGCAAGCTGCCTAG-CTA-GCCAATGGCGTGCAAGC
GGGCCACCACGCGGGAGCTCCGGGCGATGTACGATGACGAGCCCTCCTCCATGTCCCTCGAGCTCTTCGGCTACCACGGC
GTGGTCGTCGACGGTGATGATGAGGAGGGCGACACCGCCACCGCCCTCCCCCAGCTCTCCTTCGTCGATAACTTCAAAGG
CGGGTGCGGGTCAGCAGC---GGCGGACTACTACAGCTGGGCGTACAACGCCTCCGGTGGGACGCCCGGCGCCTCCTCCA
GCTCCACTTCTTCGGTGCTCAGCTTTGAGCATGCCGGCGGTGCCGGTCATCAGCTGGCTTATAATTCCAGCACAGGTGAC
GATGACTGTGCGCTCTGGATGGACACCATGGCCG---ATCAGCATGGCGCTGCCAA---GTTTGGGTTCATGAACCCAGG
GTCGGCCGATGTCGTCCCAGAAATCCAGGAGAGCAGCATCAAGCAGCCGGCCAAGTCTGCGCAGAAGCGCTCGAGCTCGG
TAACTACCTACATCAGATTAATTTTTTCTATGCATTCATGAGAATATGTTGTTACCTACACAAACTTTGCATCAAATCTA
TTTAAGTG----AATAATCTGATCTGTGTTTATCTGTG----AAGGGTGGTGAGGCGCAAGCGGCGGTGAAGAAGCAGTG
TGGAGGAGGCAGGAAGAGCAAGGCCAAAGTTGTGCCTACAAAGGACCCTCAGAGCGTCGTTGCAAAGGTACATATACAGG
CAGCATGGA-TCAATTTCTCCCTATTGTTGTGGTGGCAAGATTCTTTGCACTGCAAGAAAATTGCTTCGA-CGAAGCCGA
ACTAATCCAAGTTACTCGATCGATCATGGATCTTTAGGTCCGAAGAGAGCGCATCAGCGAGAGGCTCAAAGTTCTGCAGG
ATCTGGTCCCCAATGGCACAAAGGTGCGTACCATGATTTCTTCT-------------CATGCCTCAGCACAGTTTTTGTG
TGAAAAAATGACCTGGTCATGGTCATTAGTTGCTAATTTTCTGAATGAAACCAACTCGCGTAGGTGGACATGGTCACCAT
GCTCGAGAAGGCAATCACCTATGTCAAGTTCCTGCAGCTGCAAGTCAAGGTATGCGG-CAATCGGTTATCAATGCGTCGA
CTACTCTTTCGACCCAATTCACTTCTATGAACTACATGCAGTCTCATGTCTGATGTATGAATTATAACCCGGTTCGTGCA
TATTCGGTGTGTTTGC--GCAGGTGCTGGCGACCGACGAGTTCTGGCCGGTGCAAGGGGGGAAGGCGCCGGAGCTCTCCC
AAGTGAAGACCGCCCTGGACGCCATCCTGTCTTCTCAGCAGCAACCCTAGGCCATGGATGCATGCATCCATGTTGAATTT
TTTACCCAAGTTTTAGAT-GATCGCGG---CACGTGTAAGATCAGAACAGAAAAGAGAGCACAAGCTCTGTAAAAATAC-
------------------ATGGCAGATCATGTTTTTTGTTTCACTCCTTTTA---------GATCAATTCTCCTTGTTTT
TTATGTGATCGGGATTTGAAGTTCCGATCACTGTAACTAGTCCAATAAAACT-------TAGAGGAACATGATGTTACAC
AGCTTAGTGAAACCTAGACAGGGTCCCGCCATCGCGTGCAACGAAAATAAA---GTTGTTTCTATTGAAACATAAAACCC
TCTTCTTCTTTTGCAGGGAACATAAGATCCTCTCCTTGATT--TACAAGAACAACGCACGATCGGATTCATTGAAATGTT
GTTATCTTGAGTTCTTC-------------------------------GAACTAGAAAACTGAGCTATGGGGATTTAGAT
CAAAGGGTATTTGACACCACATGAA------------------------------------AAACAAATGAACTGTACAA
AGTGGTTTGA---ATGCAAACCAATCCTCAGGAAAGAAAAAGAATCCCTAAGGATTCATTCACATTCTCTAAAAAAAATC
CCTTTGAAATTCCAAGGATCCAAACTAAACCTCAGGGGTTTGGATCCAAGT----TCCTTTCAATCAAAGGAACCCTAAA
TCCTGAAATGGCAACAGGGAGCCTTCCTGAGATGAACGTAGTTTTTTTTTTTTTTAGGGATCCCCACACTTTATTAATTT
GAACCAAAGATCAAAGGGATACAAAGTTTTT-ACAAGTT--AGATGAAAGTAGTTAAAATCAATTTCGCGTCAAT-----
--------------------------------------TGGGCGGCGGGCCTGAGTAGCATCCATCCATCCATGAATCGT
GCAAACCTTATTATTTC----------------------ACGGGGTCTAGATCTGAGATTGACAAATGAGCATTTGTCAG
GGATCTTAATTAAC-TTTTTCGCAAACAAAAAGGGATCTTGG---TTAACAAAGTAAATCGCCACAGAATTTGTATAGAG
A---------------------------------TTTTCTGCTACCAACATTTTCGCAAAC------------ATCGGAG
ATCGTGCGGCTACTTGTGTTTTCTTCTCTCCAG-GTCAAACAGTTTTGTAATGCAACTGGAATTAATTGCAGTTAGTGCG
TGATTAGAGGAGGCTCAAGACAACTCCTTAGGATGCGGCTGCTGATGATGCCATCATGTCTCACTAGAGTGGAGACA---
ATTCCTCAACAACTAAAAGACA
>chr3D_2
-CCCGGCACAAGATATTCTTTAAG--------------------------------------------------------
----------------------------GTACGTGTGAATAACAACCGATTTCCCATGTGCGTAGGAT----ATGCATGG
ATGGATGCTTCCTCTCAGTTAATTGCATGTCTGCATTTGGTCCAGTAGCTTTGAGCCACGTTTACGATGACTCGGTCTGA
AGAACATATATCTATACAATTCTACATTGGTACCAGCTGGTTTTGTTAAGCCTGCGGCGAATTGCTGCGTGCAACTGCTG
GTGATCTGCATTAGTCGCTGATAAAGCTAAAGTTTCTGTCGATGCAAAAATC--AGATTGCGGTGAAAACAAGAACTTAT
AATTCCCTGCGAT----TTGAAGTAGTAGGGGGATAGTTTCTTGTTTTCACTGTAACCATTATTGGTGCTGTGCTAGCAG
TAGCAGGTACCTAAACCCTGACCAATATATGTGAACCT---ACATA--TAGAAGAAACATGTACTCTCGTACGACGTACG
GCCGATCAATTATATATATACCAAGGAAATAATTGAAGTTACATACCCTACAAGAACCTACACATATTTTTGCTTGGCTG
CCTTACACATGG----GCTAGCTATAGCTTAGCTAGCCATGGCAATGGAGGTTCCCC-----------------------
----------------------------------------AGCAAGCTTGTTTCATGCATGCTAAGCCTGAATTGAATTG
AATACAAGCTTGTCACAACGTCATCACCACCTAGCTCCTCCCCTTGTTTAAACTTAACTAATGTAAACAGCATCAACTTG
GCCTTGAATGCCACGTGAAGAGAGAGCCCGGGTGCGAAGGAGTGTAGATTATGTGGCACTGGAACATGGGGGGAGGGG--
---GTTAGCTCCACTTCTAC---------TACTACTTAATCACCTTACTTAGCTGAGCATAACAAGGGAATTAATCATGG
GTCCACTGCTGTCTGTCTCCCTCTTAGCACTTGACCCC-ATATTCCACTGACAGCTCAAGACCTTGCTGGCTCATTAAGC
TCTGCACACTAGCGCCTACTCGATTAAGAAACCCCTCACTCTATATAAGTAGCCGCATGCTTGCACGTCTCATGCATTGA
CAGAGCTCAGCTAGCTAGCTACCTGCCAAGAGCTGCCCTGAACCCTAGCTAGTAGTAGCTCCCCGGAACACCGTCACCAG
TAGCTCGGTCTCACCTAGGTAGCTAGGGAACAGTGACACAGAGCAGCTAGCTGCCTAG-CCTGGCCAATGGCGTGCAAGC
GGGCCACCTCGCGGGTTCTCCGGGCGATGTATGACGACGAGCCCTCCTCCATGTCCCTCGAGCTCTTCGGCTACCACGGC
GTGGTCGTCGACGGCGACGATGAGGACGACGACACCGCCACCGCCCTCCCCCAGCTCTCCTTCGTCGATAACTTCAAAGG
CGGGTGCGGGTCG---GCAGCGGCGGACTACTACAGCTGGGCGTACAACGCCTCCGGTGGGACGCCGGGCGCCTCCTCCA
GCTCCACCTCTTCGGTGCTCAGCTTTGAGCATGCCGGCGGTGCCGGTCATCAGCTGGCTTATAACGCCGGCACAGGCGAC
GATGACTGCGCGCTCTGGATGGACGGCATGGCCGACCATCAGCATGGCGCTGCCAA---GTTTGGGTTCATGAACCCAGG
GTCGGCCGATGTCGTCCCGGAAATCCAGGAGAGCAGCATCAAGCAGCCGGCCAAGTCTGCGCAGAAGCGCGCGAGCTCGG
TAAATACCTACATCAGATCTTTCCCGTACATTCAT--ATGAGAATATGTTGTTACCTACGCAAACTTTGCATCAGATCTA
TTTAAGTG----AATAATCTGATCTGTGTTTATCTGTG----AAGGGCGGTGAGGCGCAAGCGGCGGCGAAGAAGCAGTG
TGGAGGAGGCAGGAAGAGCAAGGCCAAAGTTGTGCCTACCAAGGACCCTCAGAGCGCCGTTGCAAAGGTACATACAAG--
CAGCATGAGTTCAACTTCTCCCTATTCTTGTGGTG-AATGATTCTTTGCGTGGCGAGGAAATTGCTTCGATCGAAACCAA
ACTAATCCAAGTTACTCCATCGATCATCCCTGTGTAGGTCCGAAGAGAGCGCATCAGCGAGAGGCTCAAAGTTCTGCAGG
ATCTGGTGCCCAACGGCACGAAGGTGCGCACCATGATTCCTCCTCATGCACACCATGCATGCTTTAGCACAGCTTTTTTC
TGTCAAAATGTTC------TGGTCATCAGTTGCTAATTTTGTGGATGAAACCAACTCGTGTAGGTGGACATGGTCACCAT
GCTCGAGAAGGCAATCACCTATGTCAAGTTCCTGCAGCTGCAAGTCAAGGTATGCGATCGATCAGTCATCGTTACATCGA
CTACTTGTTCTTCAACCCTTGGATGATCGATCTACAGTCCGATG-ATGTCTGATCTGCAATGTATAACTTGGTCCACGCA
TAATCGGCATCTATATATGCAGGTGTTGGCGACCGACGAGTTCTGGCCGGTGCAAGGAGGGAAGGCCCCGGAGCTCTCCC
AAGTGAAGACCGCCCTGGACGCCATCCTGTCCTCTCAGCAGCAACCCTAGGCAATTT---CATCCATCCATGTTGAATTT
T-AT-CAAAGTTTTAGATTGATCGCGC---CGCGTGTAAGATCAGAAAAGAAAAGAGAGCACAAGCAGCTCTGTAAACAT
TCATACATGGCAGTCATGATGGATGATCATGTTTTT-GTTTCACTCCTTTTATAAGTAGAAGATCAAATCCCCTTGATCC
GTGTATTGGAGTC---TGAAGCTCTGATCACTGTAACTAGTCCAATAAAATCCTTGACGTAGACGAGCATGATGTTTCAC
AGCTTGGTGAAACCTAGACAGGGTCCCGCCACAGGGTGCAAGTACAATAAA---ATTGTTTCTGTTGAAACACAAAATCC
TGAAAAACAAATGAACTTTTTCTGAAAATAAACTTACTATTTCTTCTTTAGTCCCATAGAATTCTACTCTGTCCGATCTG
TATTACTTGTCGTACCTTTAGTACAGCGACAAGTAATATGGATCGGAGGAAATAGAAGACTGAACTATATGGATTTGGAT
CAAAGGGTAGTACTCCCTCCATCCCAAAATAAGTGACTCAAGTTTGTACTAACTTTGTACTAATTAAATGAATTGTACCC
AGAGGCTTATTGGGTGCAAACCAATCTTTATATTAGTGAAGGA-------------------------------------
------AAATCCTAAGGATCCAAATTCTCTAGAATTCCTATGAGGCTG---------CTTCCAATCAAAGGAGCACTCAA
TCTTGAATCGGCAAC-----------------------------------------------------------------
---------------------------------------TGAGATCAAAGCACTTGGAATTGATCTTGTCAAGGGAGTAG
CAATGCATGCATGCATG----------------------------------------------------------ATCGT
GCAACCCTTACTAGTATTATGTTTCCTCTTAAACTTTCAACCGGGTCTAGATC-GAGATTGGCAAAT----ATTTCTCAG
GGATCTTAATTAAC-TGGAG----------------------------ACAAAGTAAATCACCACAAAATTTATATGGAG
AGGAGAATGTACTATGTGTTCTGGGCACCACAGATTTTCTGCCACGAATATTGATAGCGCAGCATCGTCATCGATCAGAG
ATCGTGCGGCTACTTGTGTTTTTTCTCAA-----GTCAAACAGTTTTGTAATGCAACTGGAATTAATTGCAGTTAGTGCG
TGATTAGAGGAGGATGGAGACAAATCCTAGGAT----GCTTTTGATGATGCCATCATGTTGCAATGGAGTGGAGACACAA
TTTCTCAGCAGCAA--------
>SNPs
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-------------------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
------------------------------------------S--------------------------S----------
----------------------
>forward_1784
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GCCGATGTCGTCCCAGAAAG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_3276
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CACAA
AGAGGCTTGAGTGCA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
