CLUSTAL X (1.81) multiple sequence alignment input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 GGAAGTGGGGGGTGGCTGCGGCGGTGTTGGGTTTCGCCCGAGCCGCTCCC chr7A_775 GATGCTTGT----------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 CTGGAGAGCGACGCGAGCGTGACTGTGGTATGTATATAGAAATAAAATCA chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 TTTTTTTTATTTCTTGTTGATGCATTATATATTTGTTGAAGCTTAGACGT chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 GACATCCTTAAAAAACATCTAGATGTGAATTAGACAAACCGTTAATATAA chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 TATGACTCCTAAACCCTTTAACACTGTGAAGTACATCCAGCAACGTGGAA chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 GGGGCGTGTCTAACATGGCACCTCCCAGCTTTCTATCAGGTGGCTAGTGC chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 ACTAAATATATGTTCATGCTACACTCTCATGTCGATATTAGACAGAAGTC chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 TCTCATGTACAAAATTAGACAGATGTTGGCGAGAAGTGCATGGATGAACC chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 CGGGTACATATGAACCCACTTTGAAAAACACATTTCTAAATTCTAAAAAA chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 ATCTGGAAAAAAATTGCACGGGTACGTCTCCATGTTCTATGTGCGTGCAT chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 AAAGTTTCATGAAAAAATAACTTTTTTTGTGACCTGTGCAAAAAAGACAA chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 AAAATTATGTCGTGAAACACTATTTAAAAGCACTGAAATTTGTCTTTTTT chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 TGCGGAGGCAAAACAAAAAGATATTTTTTGATAAAACTTTGTGCCGCGTA chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 ---------------------------------AAACTTTGTGCCGCGTA reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 CACACATTTGCGAACATATATGCGTGATATTTTCTTTTGATTTTTTTGAC chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 CAC----------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 ATTTTAAAACGTGCTTAAAATGCATTTTATGAAAAGTGGGTGCATATGCC chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 CATGGGTTCAGATGGTGCCCTCTCGATGTTGGCGGACCAAACTAGCAATT chr7A_775 ---------------------------------GGACCAAACTAGCCAAT chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-S- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -----------------------------TGGCGGACCAAACTAGCAAT- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 CCCATGGGTCGACATCGGGGGTCTCATTGGCACAGTGTCATCCTTTGGTA chr7A_775 CCCATGGGTCGACATCGGTGGTCTCATTGGCACAGTGTCATCCTTTCGTA chr7D_805 ----TGGGTTGACATCGGTGGTCTCATTGGCATAGTGCCATCCTTCGGTA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs ------------------S------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 CAAGAAAGCATAGGTACCTCATAATATCAGTTAGTAGTAGTAGTTAGCAA chr7A_775 CAAGAAAGCATAATATCAGT-----------------TAGTAGTTAGCAA chr7D_805 CAAGAAAGCATAGGTACCTTATAATACCAGT---------TAGTTAGCAA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------S------S----SSSSSS------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 GAGAACAGTTAGTGCACTAGAACA--ATATCCAGCTTCCCTTTGGTTGCT chr7A_775 GAGAACAGTTAGTGCACTCCAAGAACATCCAGCTT---CCCTTGGCTGCT chr7D_805 GAGAACAGTTAGCGCACTCCAACA--ATCCACCTT---CCCTTGGCTGCT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs ------------------SS--------SSS-SSSSSS--S----S---- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 GCC----------CTCGCAACTTCACAGTATATGTACACCCCTCGATCGG chr7A_775 GCCTGGTCG----CTCGCAACTTCACAGTATATGTAGGCCACTCAATCGG chr7D_805 GCCTGGTCGGTCGCTCGCAACTTCACAGTATATGTACGCCCCTCGATCGG chr7D_963 ------------------------ACAGTATATGTACACCCCTTCATCGG chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 ------------AAATTAAGGTCTGCATCATCATCCAG---ATATGGAGC chr7B_1_TraesCS7B01G006200 TTCTCAGGAGGCAAATTAAGGTCTGCATCATCATCCAG---ATATGGAGC chr7A_775 TTCTCAGGAGCCAAATTAAGGTGTGCATCATCATCCAGCTGATATGGAGC chr7D_805 TTTTCAGGAGCCAAATTAAGGTGTGCATCATC---CAG---ATATGGAGC chr7D_963 TTCTCCGGATCCAAATTAAGGTG-----CATCATCCAG---AAACATTGG chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs ----------S-----------S--------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 ---------------------TGCTCGCAGTCCCCGTCCTGCTGGCGGCC chr7B_1_TraesCS7B01G006200 ---------------------TGCTCGCAGTCCCCGTCCTGCTGGCGGCC chr7A_775 ---------------------TCCTCGTAATCCCCGTCCTGCTGGCGGCC chr7D_805 ---------------------TGTTCGCCGTTCCCATTCTGCTGGCAA-- chr7D_963 TCTGGATGGAGCTGATCCGTTTGTTTGCAGTTCCCGTGCTGCTGGCAA-- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 ATGGCCATGGCCTTGACCTATCTGGCCTGGACGGCCGCCTCCCGTCGTCG chr7B_1_TraesCS7B01G006200 ATGGCCATGGCCTTGACCTATCTGGCCTGGACGGCCGCCTCCCGTCGTCG chr7A_775 ATGGCCATTGCCTTGACCTATCTGGCCTGGACGGCCGCCTCCCGTCGCCG chr7D_805 ----CCATGGCCTTGACCTATCTGGCCTGGACGGCCGCCTCTCGTCGCCG chr7D_963 ----CCATGGCTTCGACCTACCTGGCCTGGACGGCCGCCTCCCGTCGCCG chr6A_1096 -------------------------------CGGCCGTCGCCCGCCGGCG chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -----------------------------------------------S-- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GCGTTCACAGTGCTACCTCCTCGATTACGTCTGCTACAAACCGCCAGACG chr7B_1_TraesCS7B01G006200 GCGTTCACAGTGCTACCTCCTCGATTACGTCTGCTACAAACCGCCAGACG chr7A_775 GTGTTCACAGTGCTACCTCCTCGATTACGTCTGCTACAAACCACCAGACG chr7D_805 GCGTTCACAGTGCTACCTCCTCGATTACATCTGCTACAAACCGCCAGACG chr7D_963 GCGTTCACAGTGCTACCTCCTCGATTACGTTTGCTATAAACCGGCAAACG chr6A_1096 GCGCTCGCGGTGCTACCTGCTGGACTACGTGTGCCACAAGCCGAGCGACG chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 ACCGCAAGGTGACGACGGATATGGGGGTCGCACTGGCCGAGCGTAACAAG chr7B_1_TraesCS7B01G006200 ACCGCAAGGTGACGACGGATATGGGGGTCGCACTGGCCGAGCGTAACAAG chr7A_775 ACCGCAAGGTGACGACGGATATGGGGGTCGCACTGGCCGAGCGTAACAAG chr7D_805 ACCGCAAGGCGACGACGGATATGGGGGTTGCACTGGCCGAGCGTAACAAG chr7D_963 ACCGGAAGGTGACGACAGATATGACGGTCGCAATGGCCGAACGCAACAAG chr6A_1096 ACCGCAAGGTGAGCACGGAGGTCGGCGGCAGCTTGATCCTGCGCAACAAC chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 CGGCTCGGCGCCCCTGA--------------------------------- chr7B_1_TraesCS7B01G006200 CGGCTCGGCGCCCCTGA--------------------------------- chr7A_775 CGGCTCGGCGCCTCTGA--------------------------------- chr7D_805 CGGCTCGGCGCCCCTGA--------------------------------- chr7D_963 CATCTCGGCATGTCCGAGTTACGCTACCTCTTTTTTTTAGAACATAGAAG chr6A_1096 CGCCTCGGCCTCCCCGA--------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 TCAGGGACATCCGGCTTTAAATTAATAAAGCCCTCAACACAGGCAGCGTG chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 CACAATCAACCAACGAAACGGACAAAAAGAGACCCAGTCTCCCGTAGTCT chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 AAGACATACCCGAAGCGAAACGAAAAAAGCATTACATGGCATGTCCAGCC chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 AACTTAAGAGCACGCAGGCTCGGAGGAAACACTACCAAAAGGGCCACCCA chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 TCCCTATGAGATTGCGGAAGGAGGCGTCGGGGCTCGTGACGTGGAGTAGA chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 CAGAACGCAGGCGAGCTAGAGCCAGCAGATGTAGATCAGAGTCCTGTTGC chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 CTTCCCAGCGGGGCCATTGCTGCAAGAACAAGATGCATTTGTAGATTACG chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 TCAGCGGGGTGAGAGGGGAACACACCCTCAATTGTAAACTTGTTACGAAT chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 GTTTCACAAAGCCCACAACATGGCCGCCGCACTTGTCCACATAACACGAC chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 GCGAAGAACCCTGGGCTGAGGACAAAGACGACACTAGCTCTGGGCGGGAG chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 TGTGGATCCCAATCCACCCCCGCGGCCTCCCGGACTGCGCTCCAGGCAAA chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 GCGCGCCAAGGAGCAACGGAAGAACACATGGTCAGCGTCTTCCGGAACGC chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 CACACAACGCGCAAGGGCCAGCGGCCGGGCCATTGCGTTTGGCAATATTG chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 ACAGAAGTAGGAAGGCGGTCTTGACAAAGTTTCCAGAGGAACACCTTGAT chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 CTTGAGAGGAATTCTAGCCTTCCAAAGCCCCGCGGCAGCCATAGGGACAT chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 GGCCCCGGGATAGCTCACTGTAAAGGGACTTGACAGTAAATTTGCCTGAG chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 CCCGAAAGTCTTCAGGACACCGTGTCCGCGCTGTTCGACAAACGAACGTC chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 --GTTACGCTACCTCTTCCGCCTAACGTCTCGCGCCGGTCTGAGTGAGCA chr7B_1_TraesCS7B01G006200 --GTTACGCTACCTCTTCCGCCTAACGTCTCGCGCCGGTCTGAGTGAGCA chr7A_775 --GTTACGCTACCTCTTCCGCCTAACGTCTCGCGCCGGTCTGGGTGAGCA chr7D_805 --GTTACGCTACCTCTTCCGCCTAACGTCTCGCGCCGGTCTGGGTGAGCA chr7D_963 GTGTTACGCTACCTCTTCCGCCTAACGTCTCGCGCTGGCCTGGGTGAGCA chr6A_1096 --GCTCCGGTTCCTCCTCCGCGTCATCGTCCGGTCCGGCATCGGCGAGCA chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs ------------------------------------------S------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------GTGAGCA reverse_5112 -------------------------------------------------- input_sequence_45643 GACCTACCTCCCTTGTGGCATCTTGGCAGGCCGCGAGAAGTGCCTCACCC chr7B_1_TraesCS7B01G006200 GACCTACCTCCCTTGTGGCATCTTGGCAGGCCGCGAGAAGTGCCTCACCC chr7A_775 GACCTACCTCCCCTTTGGTCTCTTGGCCGGCCGCGAGAAGTGCCTCACCC chr7D_805 GACCTACCTCCCCTCTGGCATCTTGGCCGGCCGCGAGAAGTGCCTCACCC chr7D_963 GACCTACCTCCCCTCTGGCGTCTTGGCCGGCCGCGAGAAGTGCCTCACCC chr6A_1096 CAGCTACGACCCGTGCAGCATCCTGGAGGGCCGCGAGGACTCGCCCACCC chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs ------------S--------------S---------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 GACCTACCTCCCT------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 ACCAGGACGCGCTCGACGAGATGGACGCCTTCTTCATCGACGCCGTCGCC chr7B_1_TraesCS7B01G006200 ACCAGGACGCGCTCGACGAGATGGACGCCTTCTTCATCGACGCCGTCGCC chr7A_775 ATCAGGACGCGCTCGACGAGATGGACGCCTTCATCATCGACGCCGTCGCC chr7D_805 ACCAGGACGCGCTCGACGAGATGGACGCCTTCTTCATCGACGCCGTCGCC chr7D_963 ACCAGGACGCTCTCGACGAGATGGATGCTTTCTCCATCGACGCCGTCGCC chr6A_1096 ACCGGGACGCGCTCGACGAGATGGACGCCTTCTTCGACGAGGCCATCGCG chr7D_1353 -----------------------GACGCTTTCTCCATCGACGCCGTCGCC chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GGCCTCTTTGCCAATACCGGATTCGGCCCCCGTGACGTGGACGTGCTCGT chr7B_1_TraesCS7B01G006200 GGCCTCTTTGCCAATACCGGATTCGGCCCCCGTGACGTGGACGTGCTCGT chr7A_775 GGTCTCTTCGCCAATACCCGATTCGGCCCCCGTGACGTGGACGTGCTCGT chr7D_805 GACCTCTTCGCCAATACCGGATTCGGCCCCCGTGACGTGGACGTGCTCGT chr7D_963 GGCCTCTTCTCCAAGACCGGATTCGGTCCCCGCGACGTGGACGTGCTTGT chr6A_1096 GATCTCTTCGTGAGGACCGGCATGTCGCCCGGGGACGTCGACGTGCTCGT chr7D_1353 GGACTCTTCGCCAAGACCGGATTCGGA-CCTGGGACATCGACGTAATCGT chr7D_1525 -------------------------------------------------- SNPs --------S----------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GGTCAACGTCAACATGTTCAACCCGGAGCCTTGCCTTGCCTCGCGGATCG chr7B_1_TraesCS7B01G006200 GGTCAACGTCAACATGTTCAACCCGGAGCCTTGCCTTGCCTCGCGGATCG chr7A_775 GGTCAACGTCAACATGTTCAACCCGGAGCCTTGCCTTGCCTCGCGGATCG chr7D_805 GGTCAACGTCAACATGTTCAACCCGGACCCTTGCCTTGCCTCGCGGATCG chr7D_963 GGTCAACGTCAACATGTTCAACCCGCATCCTTGCCTCGCCTCGCGGATCG chr6A_1096 CGTCAACGTCTCCCTTTTCTCCCCGGCGCCGTCGCTTGCCTCCAGGGTCG chr7D_1353 GGTCAACGTCAACATGTTCTGCCCGCAACCTTGCCTCGCCTCGCGGATCA chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GGCACCACTACGGAATGCGCGAGGACGTCGCGGCGTACAACG--TCTCCG chr7B_1_TraesCS7B01G006200 GGCACCACTACGGAATGCGCGAGGACGTCGCGGCGTACAACG--TCTCCG chr7A_775 GGCACCACTACGGAATGCGCGAGGACGTTGCCGCGTACAATG--TCTCCG chr7D_805 GGCACCACTACGGAATGCGCGAGGACATTGCGGCGTACAATG--TCTCCG chr7D_963 CGCACCACTGCGGCATGCGCGACGACGTCGTGGCGTACAACG--TCTCTG chr6A_1096 TGCGCCGCTTCGCCATGCGCGAGGACGTTGCCGCGTACAGCC--TCTCCG chr7D_1353 CGCACCGCTACGGCATGCGCCACGACGTAGTGGCGTACAACGTATCTCGG chr7D_1525 -----------------------------------------------CCG SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GCATGGGCTGCAGCGCCACGCTGGTCTCGTTGGATATCGTCCAGAACGTC chr7B_1_TraesCS7B01G006200 GCATGGGCTGCAGCGCCACGCTGGTCTCGTTGGATATCGTCCAGAACGTC chr7A_775 GCATGGGCTGCAGCGCCACGCTCGTCTCTTTGGATATCGTCCAGAACGTC chr7D_805 GCATGGGCTGCAGCGCCACGCTGGTCTCGCTGGATATCGTCCAGAACGTC chr7D_963 GCATGGGCTGCAGCGCGACGCTGGTCTCGTTGGATATCGTCCAGAATGTC chr6A_1096 GCATGGGGTGCGGCGCCGGCCTCGTCGCGCTCGACCTCGCGCGCAATGCG chr7D_1353 GCATGGGCTACAACGCCCCGCTGGTCTCGTTGAATATCGTCTTGAACGTC chr7D_1525 GCATGGGCTGCAGCTCAACACTGGTCTCGTTGGATATCGTCCAAAACATC SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 ATGCGGGCACGGTCGCCGCGCCCCGTGCTTGCGCTTGTGCTGTCGACGGA chr7B_1_TraesCS7B01G006200 ATGCGGGCACGGTCGCCGCGCCCCGTGCTTGCGCTTGTGCTGTCGACGGA chr7A_775 ATGCGGGCACGGTCGCCGCGCCCCGTGCTTGCGCTGGTGCTGTCGACGGA chr7D_805 ATGCGGGCACGGTCGCCGCGCCCCGTGCTTGCGCTGGTGCTGTCGACGGA chr7D_963 ATGCGGGCACGCTCACCGCGCCCAGTTCTGGCGCTCGTGGTGTCGACGGA chr6A_1096 ATGCGGGCTCGGCCGGCGT---CCACGCTGGCCCTCGTGGTCTCGTCCGA chr7D_1353 ATGCGGGCACGGTCGCCGCGCCCGGTGCTTGCGCTGGTGCTGTCGACGGA chr7D_1525 ATGCGGGCACGGTCGCCGCGCCCCGTGGTTGCGCTAGTGGTGTCGACGGT SNPs -----------------------------------S-------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GGTGCTCTCGCCTGGAAACTACCTGGGCACGGACAGGTCCATGATGCTGG chr7B_1_TraesCS7B01G006200 GGTGCTCTCGCCTGGAAACTACCTGGGCACGGACAGGTCCATGATGCTGG chr7A_775 GGTGCTCTCGCCTGGAAACTACCAGGGCACGGACAGGTCCATGATGCTGG chr7D_805 GGTGCTCTCGCCTGGAAACTACCTGGGCACGGACAGGTCCATGATGCTGG chr7D_963 GGTGCTCTCGCCTGGATACTACGGGGGCACAGACAGGTCCATGATGCTGG chr6A_1096 GTCCATCGCCCCCAGCTGGTACGCCGGCACCGACCGGTCCATGATGCTGG chr7D_1353 GGTGCTCTCGCCTGGAAACTACCTGGGCACGGACAGGTCCATGATGCTGG chr7D_1525 GGTGCTCTCGCCTGGAAACTACCTTGGCACGAACAGGTCCATGATGCTGG SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GACTATGCCTTTTCCGCTGCGGCGGGGCAGCGGCGCTGCTCACCAGCAAC chr7B_1_TraesCS7B01G006200 GACTATGCCTTTTCCGCTGCGGCGGGGCAGCGGCGCTGCTCACCAGCAAC chr7A_775 GACTATGCCTTTTCCGCTGCGGCGGGGCAGCGGCGCTGCTCACCAGCGAC chr7D_805 GACTATGTCTTTTCCGCTGCGGCGGGGCAGCGGCGCTGCTCACCAGCGAC chr7D_963 GACTATGCCTTTCCCATTGCGGCGGGGCAGCGGCGCTGCTCACAAGCGAC chr6A_1096 GCAACTGCCTCTTCCGATCCGGAGGGGCCGCCGCGCTGCTCACCAACGAC chr7D_1353 GACTATGCCTTTTCCGCTTCGGCGGGGCAGCGGCGCTGCTCACCAGCGAC chr7D_1525 GACTATGCCTTTTCCGCTGCGGTGGGGCAGCGGCGCTGCTCACCAGCGAC SNPs -----------------------------------------------S-- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 CCCGCGCTCGGTGGACGCGCCAAGATGAAGCTACGCCGCCTTGTGCGGGC chr7B_1_TraesCS7B01G006200 CCCGCGCTCGGTGGACGCGCCAAGATGAAGCTACGCCGCCTTGTGCGGGC chr7A_775 CCCGCGCTGGGTGGACGCGCGAAGATGAAGCTACGTCGCCTCGTGCGTGC chr7D_805 CCCGCGCTTGGTGGACGCGCGAAGATGAAGCTACGCCGCCTTGTGCGCGC chr7D_963 CCCGCACTCCGCGAACGCGCGAAGATGAAATTAGGCCGCCTCGTGCGCGC chr6A_1096 CCGTCGCTCTGCGGCCGCGCCAAGATGGCGCTTCGCCACCTCGTCCGCAC chr7D_1353 CCCGCGCTCGGCGGGCGCGCCAAGATGAAGCTATGCCGCCTCGTGCGCGC chr7D_1525 CCCGCGCTCGGCGGGCGCGCCAAGATGAAGCTATGCCGCCTCGTGCGCGC SNPs -----------------------------------------------S-- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 CAACGTCGCCGCCGCCGACGATGCGTACTC-CGCCATCTTTCAGCGCGAG chr7B_1_TraesCS7B01G006200 CAACGTCGCCGCCGCCGACGATGCGTACTC-CGCCATCTTTCAGCGCGAG chr7A_775 CAACGTGGCCGCCAACGACGATGCGTACTC-CGCCATCTTTCAGCGCGAG chr7D_805 GAACGTCGCCGCCGACGACGATGCGTACTC-CGCCATCTTTCAGCGCGAG chr7D_963 CACCGTGGCCGCTAACGACGATGCATACTCTCGCAATCTTTCAGCGTGAG chr6A_1096 CAACACCGCCGCCGACGACAAGGCGCACAC-C------------------ chr7D_1353 CAACGTCGCCGCCAACGACGATGCGTACTC-CGCCATCTTTCAGCGCGAG chr7D_1525 CAACGTTGCCGCCAACGACGATGCGTACTC-CGCCATCTTTCAGCGCGAG SNPs --------------S----------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GACGCAGACAACATAACAGGGTTCAGCATCA--------ACAAGACACTC chr7B_1_TraesCS7B01G006200 GACGCAGACAACATAACAGGGTTCAGCATCA--------ACAAGACACTC chr7A_775 GACGCAGACAACATAACCGGGTTCAGCATCA--------ACAAGACCCTC chr7D_805 GATGCAGACAACCTTGTTGGGTTCAGCATCA--------ACAAGACCCTC chr7D_963 GACGCAGATAACGTTGTCGGGTTCAGCATCAACAAGAGTACAAGACCCTC chr6A_1096 -------------------------------------------------- chr7D_1353 GACGCACACAACATAACCGGGTTCAGCATCA--------ACAAGACCCTC chr7D_1525 GACGAACACAACATAACCGGGTTCAGCATCA--------ACAAGACCCTC SNPs -----------------S----------------------------S--- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 CCAAAGGCTGCCGTCCGAGCGTTCGCCGCCAACCTGGAACGGGTCGTCCC chr7B_1_TraesCS7B01G006200 CCAAAGGCTGCCGTCCGAGCGTTCGCCGCCAACCTGGAACGGGTCGTCCC chr7A_775 CCAAAGGCTGCCGTCCGAGCGTTCGCCGCCAACCTGAAACGCCTCGTCCC chr7D_805 CCAAAGGCCGCCGTCCGAGCGTTCGCCGCCAACCTGAAACGCCTCGTCCC chr7D_963 CCAAAGGCTGCCGTCCGAGCTTTCGCCGCCAACCTGAAACGCCTCGTCCC chr6A_1096 -------------------------------------------------- chr7D_1353 CCAAAGGCTGCCGTCCGAGCTTTCGCCGCCAACCTGAAACGCCTCGTCCC chr7D_1525 CCGAAGGCTGCCGTCCGAGCGTTCACCGCCAGCCTGAAACGGCTAGTCCC SNPs ------------------------------------S-----S------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 TTACATCCTCCCTGTCAGGGAGCTCCTCCGACTTGCCACCGACTTGATAC chr7B_1_TraesCS7B01G006200 TTACATCCTCCCTGTCAGGGAGCTCCTCCGACTTGCCACCGACTTGATAC chr7A_775 TTACGTCCTCCCTGCTAGGGAGCTCCTCCGGCTTGCCGCCAGCTTTACGT chr7D_805 TTACATCCTCCCTGTCAGGGAGCTCGTCCGGCTTGCCACCGACTTTACGT chr7D_963 TTACATCCTCCCTGCTAGGGAGCTCCTCCGGCTTGCCGCCAGCTTTACGT chr6A_1096 -------------------------------------------------- chr7D_1353 TTACATCCTCCCTGCTAGGGAGCTCCTCCGGCTTGCCGCCAGCTTTACGT chr7D_1525 TTACATCCTCCCTGTCAGGGAGCTCGTCCGACTTGCCACCGACTTGATAC SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GTCAGAAGATGTCTCGCCGCCGGCGATTCAAGATCGATGTCAACTTGAAG chr7B_1_TraesCS7B01G006200 GTCAGAAGATGTCTCGCCGCCGGCGATTCAAGATCGATGTCAACTTGAAG chr7A_775 GGCAGAAAATGCAGCGCCGCCAGCGAGTGAAGATCAATGTCAACTTAAAG chr7D_805 GGCAGAAAATGCAGCGCCGCCAGCGAGTCAAGATCGATGCCAAGTTGAAG chr7D_963 GGCAGAAAATGCAGCGACGCCAGCGAGTGAAGATCGATGTCAACTTAAAG chr6A_1096 -------------------------------------------------- chr7D_1353 GGCAGAAAATTAAGCGACGCAAGCGAGTGAAGATCGATGTCAACTTAAAG chr7D_1525 GTCAGAAGATGTCTCAACGCCGGCGATTCAAGATCGATGTCAACTTGAA- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 ACTGGGGTCGACCATTTCTGCCTCCACTCGGGTGGGGTTGCTGTCATCGA chr7B_1_TraesCS7B01G006200 ACTGGGGTCGACCATTTCTGCCTCCACTCGGGTGGGGTTGCTGTCATCGA chr7A_775 ACCGGGGTCGACCATTTCTGCCTCCACTCAGGCGGGGTTGCGGTCATCGA chr7D_805 ACCGGGGTCGACCATTTCTGCCTCCACTCGGGTGGGGTTGCGGTCATAGA chr7D_963 ACCGGGGTCGACCATTTCTGCCTCCACTCCGGCGGGGTTGCGGTCATCGA chr6A_1096 -------------------------------------------------- chr7D_1353 ACCGGCGTCGACCATTTCTGCCTCCACTCAGGCGGGGTCGCGGTGATCGA chr7D_1525 ---------GACCATTTCTGCCTCCACTCGGGTGGGGTTGCGGTCATCGA SNPs --S--------------------------------------S-------- forward_653 -------------------------------------------------- reverse_2992 -----------------------------------------TGTCATCGA forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 CGCTGTGAAGAAGAACTTCGGGCTCACCGAGAGGGACGTGGAGCCGTCGA chr7B_1_TraesCS7B01G006200 CGCTGTGAAGAAGAACTTCGGGCTCACCGAGAGGGACGTGGAGCCGTCGA chr7A_775 CGCCGTGAAGAAGAACTTCGGGCTCAAGGAGACAGACGTGGAGCCATCGA chr7D_805 CGCTTTGAAGAAGAACTTCGGGCTCAACGAGGCAGACGTGGAGCCGTCGA chr7D_963 CGCCGTGAAGAAGAACTTCGGGCTCAAGGAGGCAGACGTGGAGCCGTCGA chr6A_1096 -------------------------------------------------- chr7D_1353 CGCCGTGAAGAAGAACTTCGGGCTCGAGGAGGCAGACGTGGAGCCGTCGA chr7D_1525 TGCCAT---GAAGAACTTCGGGCTCAACGAGGCAGACGTGGAGCCGTCGA SNPs --------------------------S-----SS---------------- forward_653 -------------------------------------------------- reverse_2992 CGCTGTGAAGA--------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GGATGACGCTGCACCGCTGGGGAAACACGTCGGCCAGCAGCGTGTGGTAC chr7B_1_TraesCS7B01G006200 GGATGACGCTGCACCGCTGGGGAAACACGTCGGCCAGCAGCGTGTGGTAC chr7A_775 GGATGACGCTGCACCGCTGGGGAAACACGTCGACCAGCAGCGTCTGGTAC chr7D_805 GGATGACGCTGCACCGCTGGGGAAACACGTCGGCCAGCAGCGTGTGGTAC chr7D_963 GGATGACGCTGCACCGCTGGGGAAACACGTCGGCCAGCAGCGTGTGGTAC chr6A_1096 -------------------------------------------------- chr7D_1353 GGATGACGCTGCACCGCTGGGGAAACACGTCGGCCAGCAGCGTGTGGTAC chr7D_1525 GGATGACGCTGCACCGCTAGGGAACCACGTCGGCCAGCAGCGTGTGGTAC SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GTGCTGGCATACATGGAGGCCAAGGAGAGGCTCAAGAGAGGGGACAGAGT chr7B_1_TraesCS7B01G006200 GTGCTGGCATACATGGAGGCCAAGGAGAGGCTCAAGAGAGGGGACAGAGT chr7A_775 GTGCTTGCGTACATGGAGGCCAAGGGGAGGCTCAAGAGAGGAGACAGGAT chr7D_805 GTGCTTGCGTACATGGAGGCCAAGGAGAGGCTCAAGAGAGAGGACAGGGT chr7D_963 GTGCTTGCGTACATGGAGGCCAAGGGGAGGCTCAGGAGAGGGGACAGGGT chr6A_1096 -------------------------------------------------- chr7D_1353 GTGCTTGCGTACATGGAGGCCAAGGGGAGGCTCAAGAGAGAGGACAGGGT chr7D_1525 GTGCTTGCGTACATGGAGGCCAAGGGGAGGCTCAAGAGAGAGGACAGGGT SNPs -----S--S--------------------------------------S-- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -----GGCATACATGGAGGCCAAGG------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GCTTATGGTGACCTTCGGATCGGGCTTCAAGTGCAACAGTTGCATGTGGG chr7B_1_TraesCS7B01G006200 GCTTATGGTGACCTTCGGATCGGGCTTCAAGTGCAACAGTTGCATGTGGG chr7A_775 GCTCATGGTGACCTTCGGGTCGGGCTTCAAGTGCAACACTTGCATGTGGG chr7D_805 GCTCATGGTGACCTTCGGATCGGGCTTCAAGTGCAACAGCTGCATGTGGG chr7D_963 GCTCTTGGTGACCTTCGGATCGGGCTTCAAGTGCAACAGCTGCATGTGGG chr6A_1096 -------------------------------------------------- chr7D_1353 GCTCATGGTGACCTTCGGATCGGGCTTCAAGTGCAACAGCTGCATGTGGG chr7D_1525 GCTCATGGTGACCTTCGGATCGGGCTTCAAGCGCAACAGTTGCATGTGGG SNPs ---S---------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 ATGTGAATCGCGATCTGGCGGACAAGGGTCCGTGGGCC------------ chr7B_1_TraesCS7B01G006200 ATGTGAATCGCGATCTGGCGGACAAGGGTCCGTGGGCC------------ chr7A_775 ATGTGAATCGCAATCTGGCGGACAAGGGTGCGTGGGCCGACTCCATTGAC chr7D_805 ATGTGACTCGGGATCTGAAGGACAAGGGTGCGTGGGCC------------ chr7D_963 ATGTGAATCGTGATATGAAGGACAAGGGTGCGTGGGCC------------ chr6A_1096 -------------------------------------------------- chr7D_1353 ATGTGATTCGCGATCTGAAGGACATGGGTGCGTGGGCC------------ chr7D_1525 ATGTGAATCGCGATGTGAAGGAAAAGGGTGCGTGGGCC------------ SNPs -----------------------------S-------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 AAATACCCAATGGAGAGCACAGCCAACACGTCCCTGGACAAATACAGCTG chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 GATTAACGACACTGATGACGACTCCATGCTGTTCTAACACTCGTGGACGC chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 CGCATAGCATAATCCGAAAAATAAAAGCATGAACAGTGGATAACTTCTCT chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 CTGCCAGAGAGTATTGCGGGTACAAATACCGGTAAACTAGCGTGGTGTCG chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 GTCGCAACTTGTTCTTGTTCGCGTATTGAACATTGGTGAAATATATTTTG chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 TACTCCCTCCTCTCATAATGTAACACGTTTTTTGATATAAGACATTTTTT chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 GACACCACACTAATGTCAAAAAATATTTTACATTATGAGAGGAAGGGTGC chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 TCATGGTGACCTTCGGACCTGGCTTCATGTGCAACAGTTGCATGTGGGAT chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 ------------------------------------GACTGCATTGATGA chr7B_1_TraesCS7B01G006200 ------------------------------------GACTGCATTGATGA chr7A_775 GTGAATCGCGATATGGCGGGAAAAGGTGCATAGGTAGACTGCATTGATGA chr7D_805 ------------------------------------GACTGCATCGATGA chr7D_963 ------------------------------------GACTGCATCGATGA chr6A_1096 -------------------------------------------------- chr7D_1353 ------------------------------------GACTGCATTGATGA chr7D_1525 ------------------------------------GACTGCATCGATGA SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GTACCCGGTGCAGAGCACAGCCAACCCGTGCTTGGACAAGTATAGCTGGA chr7B_1_TraesCS7B01G006200 GTACCCGGTGCAGAGCACAGCCAACCCGTGCTTGGACAAGTATAGCTGGA chr7A_775 GTACCCGCTGGAGAGCACAGCCAACCCGTACATGGACAAGTATAGCTGGT chr7D_805 GTACCCGGTGGAGAGCACAGCCAACCCGTCCCTGGACAAGTATAGCTGGA chr7D_963 GTACCCGCTAGAGAGCACAGCCAACACGTCCCTGGACAAGTACGCTGGAT chr6A_1096 -------------------------------------------------- chr7D_1353 GTACCCGCTGGAGAGCACAGCCAATCCGTATATGGACAAGTATAGCTGAA chr7D_1525 GTACCCGGTGGAGAGCACAGCCAACCCGTCCCTGGACAAGTATAGCTGGA SNPs ----------S------------------S-S------------------ forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 TGATGAATGACAACACTGATGACGATTCCACATTCCCTCTGTTGTAAAAC chr7B_1_TraesCS7B01G006200 TGATGAATGACAACACTGATGACGATTCCACATTCCCTCTGTTGTAAAAC chr7A_775 TGATAAATG----------------------------------------- chr7D_805 TGATGAATGACAACGCTGATGACGATGCCACATTGCCTCTGTTATAAAAC chr7D_963 TAATG-------ACACTGATGACGACTCC--------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 TGATAAATGACAACGCTGATGACGATTCCACGTTGCCTCTGTTGTAAACC chr7D_1525 TGATGAATGTTAATGTTGATGACGATTCCACATTGCCTCTGTTATAAAAC SNPs ----------------------------------S--------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 ACGTGGACGGCGCGTACGTCAATCACGGATCAGAAGGGCCGCGAATAAGA chr7B_1_TraesCS7B01G006200 ACGTGGACGGCGCGTACGTCAATCACGGATCAGAAGGGCCGCGAATAAGA chr7A_775 -------------------------------------------------- chr7D_805 ACGTGAACGGCACGTACCTCAATCACAGAGCGA--------CGAATAAAA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 ACGTGGACGGCGCGTACGTCATTTACGGATCACAAGTGCGGTGAATAAGA chr7D_1525 ACGTGAACGGCACGTACCTCAATCACAGCGCAA--------CGAATAAAA SNPs --------------------------------S---S--S---------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 GCATAAGAACTTCTCTTCGTCAGATTATATATGGGAGTAAAAGTACTTGA chr7B_1_TraesCS7B01G006200 GCATAAGAACTTCTCTTCGTCAGATTATATATGGGAGTAAAAGTACTTGA chr7A_775 -------------------------------------------------- chr7D_805 GCATGAGAACTTCTCTGGGTCAGATTATACATGTGAGTAAAATTACTTGA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 GCATGGGAACTTCTCTTCCTCTGATTATATATAGCAGTA----TACTTGA chr7D_1525 GCATGAGAACTTCTCTTGGTCAGATTATACATGTGAGTAAAATTACTTGA SNPs ----S-------------------------------------S------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 AAAACTAGCATGATGACACTCACAACTGCGAGGGCA--TCATCTTTAGAG chr7B_1_TraesCS7B01G006200 AAAACTAGCATGATGACACTCACAACTGCGAGGGCA--TCATCTTTAGAG chr7A_775 -------------------------------------------------- chr7D_805 AAAACTATCATGGCGGCACTCACAACTGCGAGGGCACATCTTCTTTGGAG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 AAAATTATCACAGTGACACTCACAACTGCGAGTGCA--TCTTCTTTAGAG chr7D_1525 AAAACTATCATGGCGGCACTCACAACTGCGAGGGCACATCTTCTTTGGAG SNPs -------S----S---------------------------S--------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 TAT---TTATTGAATATGCGTGCGCGTATAATATTTATGTTTTCA-AGAT chr7B_1_TraesCS7B01G006200 TAT---TTATTGAATATGCGTGCGCGTATAATATTTATGTTTTCA-AGAT chr7A_775 -------------------------------------------------- chr7D_805 TATTTATTATTGAATATGTCTGCGTGTACAATATTTATGTTTTCAGAGAT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 TATC-ATTATGGAATATGTCTGCGTGTATAATATTTATGTTTTCAGAGGT chr7D_1525 TCTTTATTATTGAATATGTCTGCGTGTACAATATTTATGTTTTCAGAGAT SNPs ------------------SS----S------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 ACTGAGAATATATATTTCAAATATATATGGCAGTATAGCCACCGAAAATG chr7B_1_TraesCS7B01G006200 ACTGAGAATATATATTTCAAATATATATGGCAGTATAGCCACCGAAAATG chr7A_775 -------------------------------------------------- chr7D_805 ACTGAGAATATATATTTCAAATTTATATGGCAGTATAGCCACCGGAAATG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 ACTGAGAAAATATATTTCA-ATTTATATGGCAGTATGAACACCGAAAATG chr7D_1525 ACTGAGAATATATATTTCAAATTTATATGGCAGTATAGCCACCGGAAATG SNPs ----------------------S--------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 TTAAATAAA----------------------------------------- chr7B_1_TraesCS7B01G006200 TTAAATAAAATATGAGATGGGCAGAAAATATTTTGTATCATTTTAGTTTG chr7A_775 -------------------------------------------------- chr7D_805 TTAAATAAAATATGAGATGGGCAGAAAATATTTTGTATCATTTTAGTTTG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 TTAAATAAAATATGAGATGGGCAGAAAATATTTTGTATCATTTTAGTTTG chr7D_1525 TTAAATAAAATATGAGATGGGCAGAAAATATTTTGTATCATTTTAGTTTG SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 TGGGATAATAATAGCATACAAGTAATCCCCCCAAAAAACT-GCTAGATGT chr7A_775 -------------------------------------------------- chr7D_805 TGGGATAATAATAGCATACAAGTAATCCCCCAAAAAAACT-GCTAGATGT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 TGGGAAAATGATAGCATAGAAGTAATCCCAAACAAAAACCAGCTAGCTGT chr7D_1525 TGGGATAATAATAGCATA-------------------------------- SNPs -------------------------------S------------------ forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 GCAGCACCGGCTGCACAACCGCTCAAAAGTCCTGGCTAGTGGCTAGTGAG chr7A_775 -------------------------------------------------- chr7D_805 GCAGCACCGGCTGCACAACCACTCAAAAGTCCTGGCTAGTGGCTAGTGAG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 GCAGCACCAGCTACACAGCTACTCAAAAGTCCTGGCTAGTG--------- chr7D_1525 -------------------------------------------------- SNPs --------------------S----------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 GAAGCACATATTCCACATACAAATATACTAGTAAGGTACACGTGCATTGT chr7A_775 -------------------------------------------------- chr7D_805 GAAGCACATATTCCACATACAAATATACTCGTAAGGTACACGTGCATTGC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -----------------------------S-------------------S forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 ATCCATAAGTTTTTGTAACCAAATTACAAATGAATACCACATTATAGTAT chr7A_775 -------------------------------------------------- chr7D_805 ATCCATGAGCTTTTGTAACAAAATTACCAATGGATATCACATTATAGTAT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs ------S--S---------S-------S----S---S------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 GTAAATAT-GTAAGTTTTGAGTTATATAGGTGTGATGTGGATGTTCATTT chr7A_775 -------------------------------------------------- chr7D_805 GTAAATATTGTAAGTTTGGAGTTATATATGCATGATGTGGATGTTCATTT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -----------------S----------S-SS------------------ forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 AATTCTTGTAGTAGTTCATCCCAATCAAAATCAAATTAATGCTACAAAAT chr7A_775 -------------------------------------------------- chr7D_805 AATTCTTGTAGTAGTTCATCCCAATCAAAATCAAATTAATGCTACAAAAT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 ATCAAACACCATAGTATAATACGAGCACTAGCCATCAAGGTTCTTGCTAG chr7A_775 -------------------------------------------------- chr7D_805 ATCAAACACCATGGTATAATACTACACAAAACTCATCTGAGTATATATGT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs ------------S---------S-SSSSS-S-SSSSSS-SS-S-SSS-SS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 CCATAGGAATTAAACCAAGTTAGTCGTCCGATCCAGTAGGAAGGAATCAT chr7A_775 -------------------------------------------------- chr7D_805 AGTACATTTGACTCTAGGCATCATGTATTGCACCTTTTTATTTCTTAATA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSS-SS-SSSSS-SS--SS-SSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 GCGTTGAGCTGTCTCTTTCCTCCACTATGATTACGTGCTTCTAGTAAATG chr7A_775 -------------------------------------------------- chr7D_805 TTTTTTTACTAGAGGCGTACCTGTTATACCACACACCAATATTAATTGGT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSS--SSS--SSSSSSS-S-SSSSSSSSSSSS--SSSSS-S-SSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 ATCCTGTAGCATGTCCTCTCCGGCCGCTAACCTCTGTCCTCCACTAATTA chr7A_775 -------------------------------------------------- chr7D_805 TCAGTTTTTTTTTTCACTTATGAACAGATTGGTCTGGCTACTAGTGGCGT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSS-S-SSSS-S--SSS-SS-SS-SSSSSSS----S-SS-S-S-SSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 CGC----------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 GTCTTTTACATGGCACACCACTAATAAGATGTAGTTAGTGGGTTCCATTT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SS------------------------------------------------ forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 AATGCAGCACGTCATTGGTATCTTGCGTAGAAACAAGTGGCGTCTGAAAC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TATGGTTGTGCCACTAATAACTTTCATCTATAAGGGATTTCCTACTAGTG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 CTTATCGGAATCTATAACGAGGTCTTTTCTCCTGTTGTGAAGCATAGCTC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TATTCGCACTTTACTCAGTATTGTTGACATGCATGATTTTGAGCTTGAGC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 AATTGGATGTTAGAACTGTAATTTTACAAGGAGAATTAGAAGAGGATTTT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 ATATGAAACAACCTGAAGGTTTTGTTTTTCCTGAAAAAGAAAAGCTTGTC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 AGTAAGTTAAAAAAAATCTCTTTATGGATTGAAGCAATCCCCTAGACAAT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 GGTACAAGAGAATTGACACCTTTATGCTCTCTCAAGGTTTCAAAAGGTCT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------GTTGAGTTAATTA chr7A_775 -------------------------------------------------- chr7D_805 AATTATGATAGTTGTGTTTATTTGAAAACTGCCAATGGTTCAATTATTTA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs ----------------------------------------S-S---S--- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 ATTGATCCTTTCCCCGTCAAGGAAGCATGATGCATGACACTGAATATTTG chr7A_775 -------------------------------------------------- chr7D_805 TTTACTCCTTTATGTTGATGATATGCTAATTGTTGCAAAGAGTATGCCAG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs S--SS------SSSSSSSSSSS-S--SSSS--SSSS-S-SS-S--SSSS- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -----------CCCCGTCAAGGAAGCATGAT------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 CTTCCAGTTTCGTTTCGAATATTTGCTTCCGAACCTATACTAGTAAAAAA chr7A_775 -------------------------------------------------- chr7D_805 ATATTGATGAACTAAAGAAGCAATTGAGTAATGAATTTGAGATGAAG--- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs S-SSSSS-SSSS-SSS---SSSS-SSSSSSSSSSS-S-SSS-SS--SSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 ATATTGTGGGCCAGAAGCATATTGTTCCATCGTCTAGAGAATTCATTCAA chr7A_775 -------------------------------------------------- chr7D_805 -------------------------------------------------- chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 CCTAACAGTGATTTAGTTCAACTCAAAAAAAAACCAGTGATTTAGTTCCT chr7A_775 -------------------------------------------------- chr7D_805 --------------------------------------GATTTAGGTGCA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-S-S forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 TCAAAAAAAAAACATTTTCCACTTGTTTCAAAAGTATCAACTTGGTGCTT chr7A_775 -------------------------------------------------- chr7D_805 GCAAAGAAAATACTTGGTATGGAAATATCCAGAGATAGACCATCTGGAAA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs S----S----S--S-SS-SSSSSSS-S--S-S--SSSS-S-S-SSS-SSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 CCATCAACTATAAAATTGCTTCCAACCAAATAGTGATAAAAGTGCAAAGA chr7A_775 -------------------------------------------------- chr7D_805 AGTATATCTAAGTCAGAAGGGATATATTGATAAAGTTTTTCGTCGTTTTC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSSS-S---SSSS-SSSSSSSS-SSSSS---SS-S-SSSS--SSSSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 AAGCA--------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 ATATGCATAATGCCAAGCCAGTGAGTACTCCATTAGCTGCACACTTCAAA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -SSSS--------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TTATCATCAACTTTATGTCCGAAGCATATGCATTGAGTGTTGTCAGTGGA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TACATGGCAAATCCTGTAGAGGAGCATTGGAAAGCAGTTCAGTGGATTTT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 CAGATACCTGCGTGGTACTTCTAATGCTTATTTACAGTTTGGGAAAACTA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 GAGATGGACTTATTAGTTTGTTGATTCTGATTTTTGCTGGTGATTTGGAT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 AAGAGAATACCACTCACAGGTTATGTTTTCACCATTGGTGGTTGTGCTGT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 GAGTTGGAGAGCAACTTTGCATTCTATTGTGGCGTGTTCCACCACTGATG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TCGAGTATATGGCTATTTCTAAGGCATGCAAAGAAGCTATCTGGTTGAGA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 GGTTTATACAATGAGCTTTGTGGAGATTCATCTTGCCCTACCATATTTAG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TGATAGTCAAAGTGCTATATATCTTACAAAGAATCCAATGTATCATGAGA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TAACAAAACACATTGATGTCAGATATCATTATATTCGAGATAACTACCCA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TGATAGCCCTGCTGATATGATGACAAAGCCAGTTCCTACCAATAAGTTTG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 AGCTTTGCTCAGACTTAGTTGGTATTTCTCACTAGTCCTATGGACTTTAA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 CGCATAAGGTGTTTATGCTGATTTGGATGGAGTTATTTACTTTCTTCGAC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TACTGGAGGAAATTTGGCTCAAGGTGGAGATTGTTAAATTGTGATCCAAA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TTCTACAGTATTGGACTAGACGTAGTACATATGGTGTGGGCCTTTGCGTT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 GGTACCGACACATACGAGTACAACTCGTTTACTTGTCCTCCAAGGACTCT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TGTATATTGCCCTCATATATACCCGTGTAGTCGCACCTAAAGATGCTCTA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 TCGACTCATGCTTGTAATACTCCTCCATCATAGTGATTGTGCCTTCGTGC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 GTCCATGGTTTTCTCCCGCAAGGGTTTCCGCGTAAAAATATGTGTCTCTC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 ATGTCTCGTTTCATCTAACAACCTACTCGATTATGTCTACTACAAACCGC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 CAGACTACCGCAAGGTGACAACAGATATGTCGTACGCAATGACCGAGGGT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 AAGGGCATGTACAATGCTGCTATCTTAGGAGTGTCACATAGATAAATGCT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 GAGTTGAAGGAGAGACAAATTATAAGAAAATGTTTGTCTTCTCTTATTTA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------ATCTTTTAGTATAAAGAAAAAAATTGCTTCGCAAAGGAATCAT chr7A_775 -------------------------------------------------- chr7D_805 AGAGATGATCTTTTAGCATAATATGTCTCACCACGCGTTTAGGAATTGCT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs ----------------S----SSSSSSSS-SSS-SSSSSS-S-S-S-SS- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 GTGGAAGCACAACTTGAATGATGACGCATTGTTCGAAAAAAAACTTGTTT chr7A_775 -------------------------------------------------- chr7D_805 AATTATTAAAGATAATCCATTATAAACAACATTTGACTGTCATCTCTAAA chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs SSSS-SSS-SS-SSSSSSSSSSS-SS--SSS--S--SSSSS-S--SSSSS forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 TAAAAGCATCATTCTCGTGCTTCCATCAACTACAAAATTGTTTCCAG--- chr7A_775 -------------------------------------------------- chr7D_805 TTACATGTAAGAAATAATCCTGTCTTATCAACCATTGTACATGGCCTAAC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -S-S-SSSSSSSSS-SS-S--SS-S-SSSSSS--SSS-SSS-SS-SS--- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 AAGCATCTCGGCATGTCCGAGTTACGGTACCTCTTCCGCTTAACATCTCG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 CACCGGTCTGGGTGAGCAGACTACCACCCCCCTGGCGTCTTGGCCGGCCG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 CGAGAAGTGTCTCACCCACTTGGAGGTTCTCCACGAGATGGACGCTTTCT chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 CCATCGACGCCGTCGCCGGCCTCTTCTCCAAGACCGGATTCAGCCCCCAC chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 GACGTGGATGTGATCGTGGTCAACGTCAACATGTTCAACCCAGATCTTTG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 -------------------------------------------------- chr7B_1_TraesCS7B01G006200 -------------------------------------------------- chr7A_775 -------------------------------------------------- chr7D_805 CCTCGCCTCACGGATCGCGCACCACTACGGCATGCGCGACGACGTAGTGG chr7D_963 -------------------------------------------------- chr6A_1096 -------------------------------------------------- chr7D_1353 -------------------------------------------------- chr7D_1525 -------------------------------------------------- SNPs -------------------------------------------------- forward_653 -------------------------------------------------- reverse_2992 -------------------------------------------------- forward_799 -------------------------------------------------- reverse_3106 -------------------------------------------------- forward_2213 -------------------------------------------------- reverse_5112 -------------------------------------------------- input_sequence_45643 --------------- chr7B_1_TraesCS7B01G006200 --------------- chr7A_775 --------------- chr7D_805 CGTACAACGTGTCCG chr7D_963 --------------- chr6A_1096 --------------- chr7D_1353 --------------- chr7D_1525 --------------- SNPs --------------- forward_653 --------------- reverse_2992 --------------- forward_799 --------------- reverse_3106 --------------- forward_2213 --------------- reverse_5112 ---------------