>input_sequence_45622
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---------ATGGGTCAGGCGAGCAGATTCAAGCGGATGTGCGTCTTCTGCGGCAGCAGCCAGGGCAACAAGAGCAGCTA
CCACGACGCCGCCATCGACCTCGCCAACCAGCTCGTACGTGCTACTACTC-T---CTATTCGTGCATGCATCTCATCTTG
GTCAGCAGTACGTATCACGATTACGCCAGCCAGCTGCTCTTGATTCTCGTT--TCGCAAAGGGGTTGTGGGGACGTTCCT
TGTTCGTAATCACGCGGT---CTAAAGCGATCGAGCAGGGAGACTTTTTAGCTAATAGCACTAATTGCTGAATGATTAAG
CAGTCGGTCGT-------------TGGTCCTTGATGAGATCCAGAATCTGAATACACTTACACTT----ATGGATGATTA
---AGGAGGA-GGGAAAACACGCGCGCCTGCTGCACATGCATGACCTGGACGGTCTTCTCTCCTCTCGTACGTTGACATG
CATTAATCTGCTTATTAGTTTGCACCA---CGGTTAATCACGAAAGCGGCTGTCAAGTTAGTAG----AGCCAAGA----
--TTAATGTGTATGTCCGTAGATGCCTAG-------------------------------------------------CT
ATGTCAAAGCACAAAACTACACACTTTTACAGTGA-----------GATGATTTTACTTGCCAGCGGCACAGAGCACGGC
TAACACTGGTAGGACAGGCCGGGCAGAGCTCGTCATCTAGGAGTACTCCGTATCTAGCTCCTCTGAAATA---GTACTAC
GTACGAACACGACTTGAA------------------GGGCATGCATGTGCATGCAAGCCATCAGCATGCGTACGTGCAC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TCGTCAGCTTCAGTGCTTCTCAT
------------------------------------------GTACTCCCTCCGTTTTTAGTTTGCATATAAAATTTAGT
CAAAGTTAAACTTTCTAAAATTTGACTAACTTTATAGAAAAAATATCGACATCTACAATACAAAAGTTATATGTTATGAA
ACTAATTTCATCATGCATCTAATACTATTGATTTCATAGTCTGAATGTTGATATATTTTTCTACAAAGCTAGTCAAATTT
TATAACTTTATAAAATTTGACTTTGATTAAATCTTATATGCGAACTAAAAAGAGAAGGAAGAAGTACTATCGATCGGCTC
ATCCATCACTTGCTAC----------------CGTCCGTACGTAG--------TACT---CCCACCGCATTCATCATGTG
CAGTAGTACGGGTTATTTCACTCGCTGTGCAAGTGCAACAAGTATTGTCTACTCCTTCCTTGTCCAGATGCATAAAGTAT
CTTAGATTGTGCATCCCGACCAAGATAGAGGAAAAAACGAAAAAATTTAATATTTATTTACTAATTAATAGCATTGTATG
CAATAAATTAATCATTGCATGTCGTGTTTGCTAGTCCTAAATCATTGAAAGTATGTATTTTTTATTGGTTGATATATCAA
GAAATAAAAACAAGATGGGAGTTAATACACCATATCAAAGTGTTTTGAGATTATTTAGTTTTCGTAACGTAACTTATACA
TCTAGACGGAGGGGTACAAGGAATTCACTC--GATCACGTACATACGGTCGGCCGCGTGA-CTTGAACGT----------
TGCCAGTCAGATCTCAAACGTACTACTTACATGCGTAC-------GTACGGTGGGAGGAGCTAGGTAATTAACGTTGAAT
GGTGGGTGACAGGTTGGTGGGGGCATCGACCTGGTGTATGGCGGCGGCAGCATCGGGCTGATGGGGCTCGTCTCCCGGGC
CGTCTACCACGGCGGCAGGCACGTCATCGGGTAA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr4A_1_TraesCS4A01G054500
TTAGGTATATAGGATTTTACATGTACTCCCTCTTATTAGTGATCTAAAAGATCTTATATTTCTTTCCTCTTTTCAGAA--
---------------------AAATCGACAAAAAGAGTCATATTTTATATTCTCTCTCTCTTTTTCATTATCTAGTGCGC
ATAGATTGTGGCTCTTATACCAATGAATGTGCCGGTCGTTGTCC----------------------------------TT
TCGACGAGATAGCCCTGCCTCCACCGCATGTGACCCAC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CCACCACGTGCA
TGCTGCTGCGAGGGATAACTCCTCCAGCGATTCCATTGGAGGTCAGCTTCGTCCAAATTTGCTTGGCCGGACAAATGTGC
ACTACAATCTGGAATTGTAGCAGAAAACTTATACGCACTATAAAGAGGAACGGAGGGAGTATGAGATTTGTGTGTTGTCA
ATTCATAGCACTATTTGCGTTCATTAATGGCTTCTAAGAAGTACAAAGGCCAGAAATCCAAAACAATTTTC-TAGAACCG
ATCCAGAGTAGTCCCTGCTTGCCAAATGATATATATCACATGTATTATTATTTTTGCAAAGTCAAAGTCGGTAAACGCTG
CTCAAGTGTATGAAAAATAATATAAAC---ATTTACAACACCGAATGTGTACCATATCAAAATACATTTTTATGATGAAT
CTAATAGTACTGGTTTGGCATTGTCAACGCTGATACACT-TTTCATAGACTTGATCAAAGGTTACATGC-TTTGACTTTG
AGAAGATGCACTATATAATATGTCAAGGTGAGAGTATATTTTAAATGATTTTAGAAAACAAGCTTTGACATTTTCTCCCG
GGAAAAAGAACTTTGACCTTCTCTATTGTTTGCAAAAGACAGCGCAGTACAG---CTATACCTAACACCCGTCGGCTCTC
TCTCTCTCTCTCTAGCC-----CGGCTTTATATAAGTG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------ATAGGTGCTCGTTGTG--CACACACACAAGCAAAACACATATCAAAG
AGAGGA-----------------------------GGAGAGGGAGAGAGAGCAGATCAAA--GAGAGAGGGAGAGGGGGA
GAGAGCAGGATGGGTCAGGCGAGCAGATTCAAGCGGATGTGCGTCTTCTGCGGCAGCAGCCAGGGCAACAAGAGCAGCTA
CCACGACGCCGCCATCGACCTCGCCAACCAGCTCGTACGTGCTACTACTC-T---CTATTCGTGCATGCATCTCATCTTG
GTCAGCAGTACGTATCACGATTACGCCAGCCAGCTGCTCTTGATTCTCGTT--TCGCAAAGGGGTTGTGGGGACGTTCCT
TGTTCGTAATCACGCGGT---CTAAAGCGATCGAGCAGGGAGACTTTTTAGCTAATAGCACTAATTGCTGAATGATTAAG
CAGTCGGTCGT-------------TGGTCCTTGATGAGATCCAGAATCTGAATACACTTACACTT----ATGGATGATTA
---AGGAGGA-GGGAAAACACGCGCGCCTGCTGCACATGCATGACCTGGACGGTCTTCTCTCCTCTCGTACGTTGACATG
CATTAATCTGCTTATTAGTTTGCACCA---CGGTTAATCACGAAAGCGGCTGTCAAGTTAGTAG----AGCCAAGA----
--TTAATGTGTATGTCCGTAGATGCCTAG-------------------------------------------------CT
ATGTCAAAGCACAAAACTACACACTTTTACAGTGA-----------GATGATTTTACTTGCCAGCGGCACAGAGCACGGC
TAACACTGGTAGGACAGGCCGGGCAGAGCTCGTCATCTAGGAGTACTCCGTATCTAGCTCCTCTGAAATA---GTACTAC
GTACGAACACGACTTGAA------------------GGGCATGCATGTGCATGCAAGCCATCAGCATGCGTACGTGCAC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TCGTCAGCTTCAGTGCTTCTCAT
------------------------------------------GTACTCCCTCCGTTTTTAGTTTGCATATAAAATTTAGT
CAAAGTTAAACTTTCTAAAATTTGACTAACTTTATAGAAAAAATATCGACATCTACAATACAAAAGTTATATGTTATGAA
ACTAATTTCATCATGCATCTAATACTATTGATTTCATAGTCTGAATGTTGATATATTTTTCTACAAAGCTAGTCAAATTT
TATAACTTTATAAAATTTGACTTTGATTAAATCTTATATGCGAACTAAAAAGAGAAGGAAGAAGTACTATCGATCGGCTC
ATCCATCACTTGCTAC----------------CGTCCGTACGTAG--------TACT---CCCACCGCATTCATCATGTG
CAGTAGTACGGGTTATTTCACTCGCTGTGCAAGTGCAACAAGTATTGTCTACTCCTTCCTTGTCCAGATGCATAAAGTAT
CTTAGATTGTGCATCCCGACCAAGATAGAGGAAAAAACGAAAAAATTTAATATTTATTTACTAATTAATAGCATTGTATG
CAATAAATTAATCATTGCATGTCGTGTTTGCTAGTCCTAAATCATTGAAAGTATGTATTTTTTATTGGTTGATATATCAA
GAAATAAAAACAAGATGGGAGTTAATACACCATATCAAAGTGTTTTGAGATTATTTAGTTTTCGTAACGTAACTTATACA
TCTAGACGGAGGGGTACAAGGAATTCACTC--GATCACGTACATACGGTCGGCCGCGTGA-CTTGAACGT----------
TGCCAGTCAGATCTCAAACGTACTACTTACATGCGTAC-------GTACGGTGGGAGGAGCTAGGTAATTAACGTTGAAT
GGTGGGTGACAGGTTGGTGGGGGCATCGACCTGGTGTATGGCGGCGGCAGCATCGGGCTGATGGGGCTCGTCTCCCGGGC
CGTCTACCACGGCGGCAGGCACGTCATCGGGTAAGGGCATCTCCAGCCGCGCCTTTAAGAAGGTCTTCTTAGACTTTTTT
TTGCGCCGGCGCCGAAAAATCGGCCCAGTCGTGTCCTAGGAGCCAGATTTTCATCGGCTTGGGCCGAAAACAGCGTCGAC
GGACCCAGGCTGAACCCGGCGCGCTGGGGGCGCCCGGGGGCGCCGGGGCGAACTATTTTGGCGCGAAACAGCCGCGGGCC
CGCCGCGTCAGCGACTCTACCCTCTTCTCGCTCCTTCGTCGTCCTCATCGTCTCGTTTCCCGTGACGAATCAATGCCAAA
GCTGCCGCACTGCCGCGCCGGTCAGTCTGCGCCATTGGTGCCTCACGGGCGGCGCAGTGAAGACCGGATGACGCGCGTCC
CTCGCCCTCCCTCGCCCGCCACGCGTACTCACGGCAGCTCCCGCACGGGCGGCGCCTCGGCCTATATAAGACGAGACCCA
GTGTGACGCCCGGATAATTAGGCTATAGTAATCACGTGTTAATGATGCCAAGCCATCAAAGTTACTGTCGTTAATCTCGC
GTTAGTTCAGAACCGATCCAAATTCAAATTTGAAAGAAAGGCAAACAACAGAACTTTTGAAACATTAAAACCAAAATGTT
CGGTTTGTGGCAAATAATCCTTACTAAATATTTGTGAAGGAACCACACTTTTATTATGTGTTTTAATGCACTAAAATGAT
TTAAATATTAGCAAACCTGATTATTTAAATGCCTTTACAGATTGATAAAATATCAAACCAAATTAATTGGGGTCTAGACT
TTTGTGGCGGTGGACTAAATCGAAATGTTCAAATTAGATGCAAAGTATATGTTTTTACAGAACCTAAAATAATAGGAAAC
---AAAAATAAAACAGAAAAGAAAAGAGGAAAATAAAGAAAATACAAAAGAGAAAACAGAAAACAAAAATAAGAGCAAAC
CCCTCCCCCCCCGGGCCGTGGCCCAACTGGGCCGACACCCCCAGGCCCGGCCGGCCGGCCCACCCCGCTACCCCCCT
>chr4B_1
TTAGGTATATAGGATTTTACATGTACCCCCTCTTATTAGTGATCTAAAAGATCTTATATTTCTTTACAGAGGGAGTAGTT
CATAGTATTCCC-----------ATCGACTTAAAGAGTCATATTTTGTACTCCCTCTG----TTCCATTATCTAGTGCGC
ATAGATTGTGGCTCTTATACCAATGAATGTGTTGGTCGTTGTCCTCTGGACGAGTCAACATGGCACCCGCCGTTGTCCTT
TGGACGAGATAGCCCCGCCTCCACCGCATGTGACCCACGAGTGATGCTAGACGCACGGACGTTTACAGAGGGATTACGGA
ATGGTTTAATTTTGATTGGTTGGGATTTGGTTAAGTGAGGCGGGCCCACCACTTGAAATCACGGGGGCCAATTAGAGTAG
TGCATGCAGTCCAGTCCGTAAAAGCCCGTTGATTTCGTCCGTGCGTGTAGTATTATCGTGTGACCCACCCACCATGTGCA
TGTTGTTGCGGGGGATAACTCCTCCAGCG-----ATTGGAGGTCGGTTTTGTCCAAATTTGCTTGGTTGGGCAAATGGGC
ACTACAATCTGGAATTTTAGCAGAAAACGTGTACGCACTATAAAGAGGAACGAAGTGAGTATGAGATTTGTGTGTCATCA
ATTCATAGCACTACTTGCATTCACTAATGGCTTCTAAGAAGTACAAAGGCCAGAAATTCAAAAACAATATTTTAGAACCG
ATCCAGAGTGCTCCCTGCTTGCCAAATTATATTG----CATGTATTATTATTTTTGCAAAGTCAAAGTCCGTAAGCTCTG
CTCAAGTGTATGAAAAATAATACTGTAAATATTTACAACACCGAATGTATACCATATGAAAATACATTTTATGATGC-AT
CTAATAGTACTGGTTTGGTATTGTCAATGCTGATACA-T-TTTTGTAGACTTGATCAAAGTTTACAGGGGTTTGACTTTG
AAAAAATGCAC--TATAATATGTCAAGGTGAGAGTATG-TTAAAATGATTTTAGAAAAGAAGCTTTGATTTTTCTACCGG
AAAAAAAGAACTTTGACTTTTTCTGTTGTTTGCAAAAGACAGCGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGGTGGTCGTTGTG--CACACACACAAGCAAAACACAGATCAGGG
AGAGGA-----------------------------GGAGAGGGAGAGAGAGCAGATCAAA--GAGAG--GGAGAGGGAGA
GAGAGCAGGATGAGTCAGGCGAGCAGATTCAAGCGGATGTGCGTCTTCTGCGGCAGCAGCCAGGGCAACAAGAGCAGCTA
CCACGACGCCGCCATCGACCTCGCCAACCAGCTCGTACGTACTACTACTC-T---CTATTCATGCATGCATCTCCTCTTG
GTCAGCAGTACGTATCACGTATCCGCCAGCCA---GCTCTTGATTCTCGAT--TCGCAAAGGGGTTGTGGGAACGTTCCT
TGTTCGTAATCACGCGGTGATCTAAAGGAAGCCGGCAGGGAGACTTTTTAGCT---AGCACTAATTGCTGAATGATTAAG
CAGCCGGTCGT-------------TGGTCTTTGATGAGATCCAGAATCTGAATATACTTACACTTGATGATGGATGATTG
---CAGAGGAGGGAAAAACACGCGCACCTGCTGCACATGCATGGCCTGGACGGCCTTCTCTCCTCT----CGTTGACATG
CATTAATCTGCTTATTAGTTTGCACCGGACCGGTTAATCACGAAAGCGGCTGTTAAGTTAGTAGTAGCAGCCAAGCTTAA
TCTTAATGTGTA----CGTAGATGCCTAG-------------------------------------------------CT
ATGTCAAAACTCAAAACTACACACTTTTACAGTGA-----------GGTGATTTTAATTGCCAGCGGCACAGAGCACAGC
TAACCCTGGTAGGACAGGTCGGGCAGAGCTTGTCATC-------------TATCTAGCTCCTCTGAAATACTAGTACCAG
GTACGAACACAACTTGAA------------------CGGCATGTA----CATGCAAGGCATCAGCATGCA----TGCAC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TCGTCAGCTTCAGCGCTTCTCCT
------------------------------------------GTAGT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AGATCACT
-------------TAC----------------CGTCAGTACGTAG--------TAGTACCCTCACCGCATTCAAACATGT
GTA-----------------------GTGCAAGTGCGACAAGTCTTGTCTACTG----C---------------------
--------------------------------------------------------------------------------
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-------------GTACAACGAGTTCACTC--CATCATGTACATACTGATACCGTCGGGCGGCCGCGGGCGCCTAGCTTG
AA-------------------------------CGTAC-------GTACGGTGGGAGGAGCTAGGTAATTAACGTTGAAT
GGTGGGTGGCAGGTGGGTGGGGGCATCGACCTGGTCTACGGCGGCGGCAGCATCGGGCTGATGGGGCTCGTCTCCCAGGC
CGTCTACCACGGCGGCAGGCACGTCATCGGGTAAG---------------------------------------------
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-----------------------------------------------------------------------------
>chr4D_4
---GGTATATAGAATTTTACATGTACTCCCTCTTATTAGTGATCTAAAAGATCTTATATTTCTTTACAGAGCGGATAGGT
CATAGTATTCCCCCTTTTTTTAAATGGACATAAAGAGTCATATTTTGTACTCCCTCTG----TTCCACTATCTAGTGCGC
GTG-----------------------------------------------------------------------------
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---------------------------------------------TATTATTATTGCAAAGTCAAAGTCGGTAAACTCTG
CTCAGGTGTATGAAAAATAATATAAAC---ATTTACAACACCAAATGTATACCATATGAAAATATATTTTATT-ATGAAT
CTAATAGTACTGGTTTGGTATTGTCAATGCTGATACA-TTTTTCGTAGACTCGATCAAAGTTTACAGGGGTTTGATTTTG
AAAAAATGCAC--TATAATATGTCAAGGTGAGAGTATGTTTAAAATGATTTTAGAAAAGAAGCTTTGATTTTTCTAACGA
AAAAAAAGAACTTTGACTTTTTCTGTTGTTTGCAAAAGACAGCGCAACCCTACATCTATACCTAACATCCGTCGGCTCTC
TCTCCCCCTCTCTCTCCAGTCTCGCCTTTATATAAGGG------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------ATCGGTGGTCGTTGTGCACACACACACAAGCAAAACACAGATCAGCG
AGAGGAGAGGGAGAGAGAGCAGATCAAAAAGAGAGGGAGAGGGAGAGAGAGCAGATCAAAAAGAGAG--GGAGAGGGAGA
GAGAGCAGGATGAGTCAGGCGAGCAGATTCAAGCGGATGTGCGTCTTCTGCGGCAGCAGCCAGGGCAACAAGAGCAGCTA
CCACGACGCCGCCATCGACCTCGCCAACCAGCTCGTACGTACTACTCTCTACGTACTATACATGCATGCATCTCCTCTTG
GTCAGCAGTACTACCA------------------------TGCTTCTCGAT--TC-----------GTGGGGACGTTCCT
TGTTCGTAATCACGCGGT---CTAAAGGAAGCCGGCAGGGAGACTTTTTAGCT---AGCACTAATTGCTGAATGATTAAG
CAGCCGGTCGT-------------TGGTCCTTGATGAGATCCGGAATCTGAATATACTTACACTTGATGATGGATGATTA
CGGAGGAAGA-GGGAAAACACGCGCACCTGCTGCACATGCATGGCCTGGACGGCCTTCTCTCCTCT----CGTTGACATG
CATTAATCTGCTTATTAGTTTGCACCGG-----TTGATCACGAAAGCGGCTGTTAAGTTAGTAGTAGCAGCCAAGC----
--TTAATGTGTA----CGTAGATGCCTAG-------------------------------------------------CT
ATGCCAAAACTCAAAACTACACACTTTTACAGTCA-----------GGTGATTTTAATTGCCAGCGGCACAGAGCACAGC
TAACCCTGGTAGGACAGCTCGGGCAGAGCTTGTC-----------------ATCTAGCTCCTCTGAAATACTAGTACTAC
GTACGAACACAACTTGAA------------------CGGCATGT-------------GCATCAGCATGCA----TGCAC-
--------------------------------------------------------------------------------
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---------------------------------------------------------TCGTCAGCTTCAGTGTTTCATAC
ATCTTTTTTATCTATTTTGATGACAAGTATTTTCGGACGGAGGAAGT---------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------ATCGATGG
GCGCATCACCTGCTAC----------------CGTCAGTACGTAG--------TAGTACCCTCACCGCATTCAAACATGT
GTA-----------------------GTGCAAGTGCGACAAGTCTTGTCTAGCTACTAC---------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------GTACAACGAGTTCACTC--CATCATGTACATACTGATACCGTTGGGCGGCCGCGCGCGCCTAGCTTG
AA-------------------------------CGTAC-------GTACGGTGGGGGGAGCTAGGTAATTAACGTTGAAT
GGTGGGTGGCAGGTGGGTGGGGGCATCGACCTGGTCTACGGCGGCGGCAGCATCGGGCTGATGGGGCTCGTCTCCCAGGC
CGTCTACCACGGCGGCAGGCACGTCATCGGGTAAG---------------------------------------------
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>chr4D_972
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----------------------------------------------------------AA--GAGGGAAAGAGAGAGGCC
AGGAGAAGGATGAGGCAGGCGAGCAGGTTCAAGAGGATGTGCGTCTTCTGCGGCAGCAGCCAGGGCAACAAGAGCAGCTA
CCACGACGCCGCCATCGACCTCGCCAACCAGCTCGTACGTACTCCTACTCAT---CAACTCATGCATCCATCTCCTCCTG
ATTAGCAGCACTGCACAGTTA----------A---GCTCCTGATTCTCGATAATCGCAAAGGGGCTGTGTTCAATTGCTG
AATGATTCTGCGCCCTAGCTAGAGCAA------AGCGGGGAGACTTTTAGC------GCACTAATTGCTGCATGATTAAG
CAGCTAGCCTGTCTGTTGGTCTGCTGGGCCTTGATGATGC--------------------------------GATGATTA
GGAAACTTGTAGT----ACATGCGCACCTGCTGCACATGCATGGG-----CGGTCTTCTCTCCGCGCTCGTTGA------
CATTGATCTCCTTAATTTGCAC---------------------------------------------------AGA----
--TTAATGGCATGTGAAATTTGTTTGCATTCAGACCGCAAGTTCTTTTTAGATAGATAGATAGATAGATAGATAGACACC
GTGTCAAAACTACATACTGTTCTCTTCTACAGTACTACGTGAGATCGATGATCTTACTTGCCAGCAGCTCTCACTCTCAG
TTCAGCACTGGTGGT-GGTAGGGCAGAGCTGCTTACTCGTGTCGACTGGTAAATTAATTATATGCTCTGCTACCCAAGTT
GAAGGAGCTTTTTTTTTAGAAAAGGAGGATGGCCCCCGGCCTCT-------------GCATCTGGGAGATGCATACAGCC
ACTTTATTGATTATTCTCGAGGACCTTACAAAGTATTACAACAATGTGCCTGAATTCACCATCTTGGCAACATATGCCGC
TACTCCTATCCAAAATGATGAAGGGGTGCTAGCTGGGCCACTACCCAGACCACTCACCTAAGCCAACATCAAAAGCCGAA
AGCCGAAACACATTCGGACGCCCCAGCCGAGCCACATACCGGGTCTGGGGCACAATCCGGTCAGACGCACTCGTGTGTCG
TCGCCGCCAACTAATCACGTGTCCGGTCTGATGGCATCCGCAAATTAAAGCACTGGATCGTCAGCTTCAGTTCTCCTCCT
------------------------------------------GTAGT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATCGGCGC
ATGCATCACTAGGCAGTACAGCTACAGTATTGCGTACGTACGTACTAGTACACTAGTATCCCCACCGCATTCAACATGTG
TA--------GGTTATTTCACTCACTAC----GTACGACAAGTCTTGTCTACTTACTAGTATTACT--------------
--------------------------------------------------------------------------------
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-------------GTACAAGGAATTCACTCTCGATCACGTACGTACGAACTGTCGGACCGGCTTGAACGTGCGTACTTGC
TGCCAGTCAGATCTCAAATGTACTTACGTTACGTACTTACGGTGTGTACGTAGCTAGGAGGTAGCTGAGCAACGTTGGGT
--------GCAGGTGGGCGGGGGCATCGACCTGGTGTACGGTGGCGGCAGCATCGGGCTGATGGGGCTCGTCTCGCAGGC
CGTCTACCACGGCGGCAGGCACGTCATCGGGTAA----------------------------------------------
--------------------------------------------------------------------------------
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>chr1B_3117
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----------------------------------------------------------------------------CCCA
TTGTGACGCCCGGATAATTAGGCTATAGTAATCACGTGTTAATGATGCCAAGCCATCAAAGTTACTGTCGTTAATCTCGC
GTTAGTTCAGAACCGATCCAAATTCAAATTTGAAAGAAAGGCAAACAACAAAACTTTTGAAACATTAAAACCAAAATGTT
CGGTTTGTGGCAAATAATCCTTACTAAATATTTGTGAAGGAACCACACTTTTATTATGTGTTTTAATGCACTAAAATGAT
TTAAATATTAGCAAACCTGATTATTTAAATGCCTTTATAGATTGATAAAATATCAAACCAAATTAATTGGGGTCTAGACT
TTTGTGGCGGTGGACTAAATCGAAATGTTCAAATTAGATGCAAAGTATATATTTTTACAGAACCTAAAATAATAGGAAAC
---AAAAATAAAACAGAAAAGAAAAGAGGAAAATAAAGAAAATGCAAAAGAGAAAACAGAAAACAAAAATAAGAGCAAAC
CCC------CCCGGGCCGTGGCCCAACTGGGCCAACACCCCCAGGCCCGGCCGGCCGGCCCACCCCGCTACCCCCCT
>chr7A_3120
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-------------------------------------------------------------------------------A
GTGTGACGCCCGGATAATTAGGCTATAATAATCACGTGTTAATGATGCCAAGCCATCAAAGTTACTGTCGTTAATCTCGC
GTTAGTTCAGAACCGATCCAAATTCAAATTTGAAAGAAAGGCAAACAACAAAACTTTTGAAACATTAAAACCAAAATGTT
CGGTTTGTGGCAAATAATCCTTACTAAATATTTGTGAAGGAACCACACTTTTATTATGTGTTTTAATGCACTAAAACGAT
TTAAATATTAGCAAACCTGATTATTTAAATGCCTTTACAGATTGATAAAATATCAAACCAAATTAATTGGGGTCTAGACT
TTTGTGGCGGTGGACTAAATCGAAATGTTCAAATTAGATGCAAAGTATATATTTTTACAGAACCTAAAATAATAGGAAAC
---AAAAATAAAACAGAAAAGAAAAGAGGAAAATAAAGAAAATACAAAAGAGAAAACAGAAAACAAAAATAAGAGCAAAC
CCC------CCCGGGCCGTGGCCCAACTGGGCCAACACCCCCAGGCCCGGCCGGCCGGCCCACCCCGCTACCCCCC-
>chr1A_3120
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-------------------------------------------------------------------------------A
GTGTGACGCCCGGATAATTAGGCTATAGTAATCACGTGTTAATGATGCCAAGCCATCAAAGTTACTGTCGTTAATCTCGC
GTTAGTTCAGAACCGATCCAAATTCAAATTTGAAAGAAAGGCAAACAACAAAACTTTTGAAACATTAAAACCAAAATGTT
CGGTTTGTGGCAAATAATCCTTACTAAATATTTGTGAAGGAACCACACTTTTATTATGTGTTTTAATGCACTAAAATGAT
TTAAATATTAGCAAACCTGGTTATTTAAATGCCTTTATAGATTGATAAAATATCAAACCAAATTAATTGGGGTCTAGACT
TTTGTGGCGGTGGACTAAATCGAAATGTTCAAATTAGATGCAAAGTATATATTTTTACAGAACCTAAAATAATAGGAAAC
AAAAAAAATAAAACAGAAAAGAAAAGAGGAAAATAAAGAAAATACAAAAGAGAAAACAGAAAACAAAAATAAGAGCAAAC
CCC----CCCCCGGGCCGTGGCCCAACTGGGCCAACACCCCCAGGCCCGGCCGGCCGGCCCACCCCGCTACCCCCCT
>chr6A_3121
--------------------------------------------------------------------------------
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GTGTGACGCCCGGATAATTAGGCTATAATAATCACGTGTTAATGATGCCAAGCCATCAAAGTTACTGTCGTTAATCTCGC
GTTAGTTCAGAACCGATCCAAATTCAAATTTGAATGAAAGGCAAACAACAAAACTTTTGAAACATTAAAACCAAAATGTT
CGGTTTGTGGCAAATAATCCTTACTAAATATTTGTGAAGGAACCACACTTTTATTATGTGTTCTAATGCACTAAAACGAT
TTAAATATTAGCAAACCTGATTATTTAAATGCCTTTACAGATTGATAAAATATCAAACCAAATTAATTGGGGTCTAGACT
TTTGTGGCGGTGGACTAAATCGAAATGTTCAAATTAGATGCAAAGTATATATTTTTACAGAACCTAAAATAATAGGAAAC
---AAAAATAAAACAGAAAAGAAAAGAGGAAAATAAAGAAAATACAAAAGAGAAAACAGAAAACAAAAATAAGAGCAAAC
CCC----C--CCGGGCCGTGGCCCAACTGGGCCAACACCCCCAGGCCCGGCCGGCCGGCCCACCCCGCTACCCCCCT
>chr1B_3122
--------------------------------------------------------------------------------
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-TGTGACGCCCGGATAATTAGGCTATAGTAATCACGTGTTAATGATGCCAAGCCATCAAAGTTACTGTCGTTAATCTCGC
GTTAGTTCAGAACCGATCCAAATTCAAATTTGAAAGAAAGGCAAACAACAAAACTTTTGAAACATTAAAACCAAAATGTT
CGGTTTGTGGCAAATAATCCTTACTAAATATTTGTGAAGGAACCACACTTTTATTATGTGTTTTAATGCACTAAAATGAT
TTAAATATTATCAAACCTAATTATTTAAATGCCTTTATAGATTGATAAAATATCAAACCAAATTAATTGGGGTCTAGACT
TTTGTGGCGGTGGACTAAATCGAAATGTTCAAATTAGATGCAAAGTATATATTTTTATAGAACCTAAAATAATAGGAAAC
---AAAAATAAAACAGAAAAGAAAAGAGGAAAATAAAGAAAATGCAAAAGAGAAAACAGAAAACAAAAATAAGAGCAAAC
CCC----C--CCGGGCCGTGGCCCAACTGGGCCAACACCCCCAGGCCCGGCCGGCCGGCCCACCCCGCTACCCCCCT
>chr3A_3122
--------------------------------------------------------------------------------
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-TGTGACGCCCGGATAATTAGGCTATAGTAATCACGTGTTAATGATGCCAAGCCATCAAAGTTACTGTCGTTAATCTCGC
GTTAGTTCAGAACCGATCCAAATTCAAATTTGAAAGAAAGGCAAACAACAAAACTTTTGAAACATTAAAACCAAAATGTT
CGGTTTGTGGCAAATAATCCTTACTAAATATTTGTGAAGGAACCACACTTTTATTATGTGTTTTAATGCACTAAAATGAT
TTAAATATTAGCAAACCTGATTATTTAAATGCCTTTACAGATTGATAAAATATCAAACCAAATTAATTGGGGTCTAGACT
TTTGTGGCGGTGGACTAAATCGAAATTTTCAAATTAGATGCAAAGTATATATTTTTACAGAACCTAAAATAATAGGAAAC
--AAAAA-TAAAATAGAAAAGAAAAGAGGAAAATAAAGAAAATACAAAAGAGAAAACAGAAAACAAAAATAAGAGCAAAC
CCC----C--CCGGGCCGTGGCCCAACTGGGCCGACACCCCCAGGCCCGGCCGGCCGGCCCACCCCGCTACCCCC--
>chr1A_3122
--------------------------------------------------------------------------------
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-TGTGACGCCCGGATAATTAGGCTATAGTAATCACGTGTTAATGATGCCAAGCCATCAAAGTTACTGTCGTCAATCTCGC
GTTAGTTCAGAACCGATCCAAATTCAAATTTGAAAGAAAGGCAAACAACAAAACTTTTGAAACATTAAAACCAAAATGTT
CGGTTTGTGGCAAATAATCCTTACTAAATATTTGTGAAGGAACCACACTTTTATTATGTGTTTTAATGCCCTAAAATGAT
TTAAATATTAGCAAACCTGGTTATTTAAATGCCTTTATAGATTGATAAAGTATCAAACCAAATTAATTGGGGTCTAGACT
TTTGTGGCGGTGGACTAAATCGAAATGTTCAAATTAGATGCAAAGTATATATTTTTACAGAACCTAAAATAATAGGAAAC
--AAAAAATAAAACAGAAAAGAAAAGAGGAAAATAAAGAAAATACAAAAGAGAAAACAGAAAACAAAAATAAGAGCAAAC
CCC----C--CCGGGCCGTGGCCCAACTGGGCCAACACCCCCAGGCCCGGCCGGCCGGCCCACCCCGCTACCCCCCT
>chr6A_3122
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-TGTGACGCCCGGATAATTAGGCTATAGTAATCACATGTTAATGATGCCAAGCCATCAAAGTTACTGTCGTTAATCTCGC
GTTAGTTCAGAACCGATCCAAATTCAAATTTGAAAGAAAGGCAAACAACAAAACTTTTGAAACATTAAAACCAAAACGTT
CGGTTTGTGGCAAATAATCCTTACTAAATATTTGTGAAGGAACCACACTTTTATTATGTGTTTTAATGCACTAAAATGAT
TTAAATATTAGCAAACCTGATTATTTAAATGCCTTTACAGATTGATAAAATATCAAACCAAATTAATTGGGGTCTAGACT
TTTGTGGCGGTGGACTAAATCGAAATGTTCAAATTAGATGCAAAGTATATATTTTTACAGAACCTAAAATAATAGGAAAC
---AAAAATAAAACAGAAAAGAAAAGAGGAAAATAAAGAAAATACAAAAGAGAAAACAGAAAACAAAAATAAGAGCAAAC
CCC----C--CCGGGCCGTGGCCCAACTGGGCCAACACCCCCAGGCCCGGCCGGCCGGCCCACCCCGCTACCCCCCT
>chr7B_3122
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-TGTGACGCCCGGATAATTAGGCTATAGTAATCACGTGTTAATGATGCCAAGCCATCAAAGTTACTGTCGT-AATCTCGC
GTTAGTTCAAAACCGATCCAAATTCAAATTTGAAAGAAAGGCAAACAACAAAACTTTTGAAACATTAAAACCAAAATGTT
CGGTTTGTGGCAAATAATCCTTACTAAATATTTGTGAAGGAACCACACTTTTATTATGTGTTTTAATGCCCTAAAATGAT
TTAAATAGTAGCAAACCTGATTATTTAAATGCCTTTATAGATTGATAAAATATCAAACCAAATTAATTGGGGTCTAGACT
TTTGTGGCGTTGGACTAAATCGAAATGTTCAAATTAGATGCAAAGTATATATTTTTACAGAACCTAAAATAATAGGAAAC
---AAAAATAAAACAGAAAAGAAAAGAGGAAAATAAAGAAAATACAAAAGAGAAAACAGAAAACAAAAATAAGAGCAAAC
CCC----C--CCGGGCCGTGGCCCAACTGGGCCAACACCCCCAGGCCCGGCCGGCCGGCCCACCCCGCTACCCCCCT
>SNPs
-----------------------------------------------------------------S-SSSSSSS-S-S--
------------------------------S---------------S--S--S----SSSSS--S---------------
-------------------------------SS-----------------------------------------------
-S-------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--S--S----S------------------SSSSS----------S-S--S----------------SS--S------S--
----------------S-----------S-S---------------------S--S-------------------SS---
-------------S----S----S---------------------------------S-----SS-S-S-S---------
---------SS----------------S----SSSSSS--------------------------------------S---
------------------------------------------------S--------S------------SS-S------
------------------S--------S---------S------S---------------S-----S-S-----------
-S--S------SS------------------------S---S----------------S---------SS---SSS--S-
SS---------------S--S---S---------------------S-S-SS---------------S------------
----S-S------SS---------S-----------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S-------------------------------S----SS-
--------------------------------------------------------------------S-----------
------------S-------------------------------------------------------------------
----------------------------------------S--------------------S------------S-----
-------------------SS-S---------SSS--------------S------------------------------
---------------------------SS-S-S--------------------SSS------------------------
---S--------------------------------------------------S-------------------------
-------------------------S-----------------S-----------------------SSS----------
--------------------------S--------------------------S--------------------------
------------SSSS----------------------------------------------------------------
--------S-S------------------------------------------------------------------S--
----S-------------S-----------S------SSS-SSS---SSS------------------------------
----------S-------------------------S------S-SSSS--------S-----------SSSSS------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-
--S----------------------------------------------------S-----------------S------
S-SSSSSSSS-------------S------------S------S---------SSS-S--SS-S-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS-----------------------------------S-S------S-S--------------------
------------------S-----SSSSSS-S------------------------------------------------
--------S-----S-----------------------S-------------------------------------S---
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
---SSSS----------------------------------------------------------------------
>forward_510
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------AGGGATAACTCCTCCAGCGA--------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>reverse_1924
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---TCGGTCGTTGGTCCTTGATG---------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>forward_548
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TCGTCCAAATTTGCTTGGCC------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>reverse_2444
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------CATGTGCATGCAAGCCATCA-----------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>forward_2360
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------GGGCAGAGCTCGTCATCTAG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>reverse_4031
--------------------------------------------------------------------------------
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------------------------------CTCCTTCGTCGTCCTCATCG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
