>input_sequence_45549
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------ATGGAGAGCACTCAGAGCAGCAAGAG
CAACAGCGTGAGGAACCATTTCATCCTGGTTCACGGCCTCTGCCACGGGGCGTGGTGCTGGTACAAGGTGATCGTGGCGC
TCGAGGCCGCGGGGCACCGCGTCACGGCGGTTGACCTCGCCGCGTCCGGCGCCCACCCAGCGCGCATCGACGAGGTGCAC
TCGTTCGAAGAGTACTCTCGGCCGCTGCTCGACGCGGTGGCCGCGGCTCCTGAAGGTGGCAGCGAGAGGCTGGTCCTGGT
CGGGCACAGCCACGGCGGCCTCAGCATCGCGCTAACAATGGAGAGGTTCCCCGGCAAGGTCGCCACGGCCGTGTTCGTGG
CAGCCGCGATGCCGTGCGTTGGCAAGCACATGGGCGTCACAACCGAGGAGGTATGTCAATTGTTCAAGGGTTTCTTATTC
TC-------------CGTTGACTCAAAGTTTCACTCTGTATTTCACTGCCGTGTATATGCG--AAAAAATAGAGAAGACT
TATCACATCACATCTCGTCTC-----------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AGTCGTATAATATACTTCCTCTAATCCGAATTAATTGACGGAACATC
TATACAATATCTAACATTGGATAGAGGCCATGTC----------------------------------------------
-------------AACATTATATAAGT--TACTTCAATTAATTCGGACACAAGGGAGCTCAATATTTTATCAAAAATGCT
GCACCTACGTAGGCTCTTACTTAATGTTACGTAACCTTCCTTCCTATAAACTGATCAGCCCCCCCTGATTTTTCACGAGG
TGGGCCGGGGCTGTTTTTACTTCCAACCAAATCTGGCCACATAAGCTTCTACGTAAGTTTCGTAAGACTTATTACGTAGA
TGTAGCAAAACTCATATATTATATGCTTTGAATATGTAACTTTCACAACTAGTTCTTGTAGAAACA-TATATAATTGTAT
AGTACTCGATAAAATTACAACATGATGAATATATCTTCCAAAATGAATAGCTATGCATGATTTTTAATTATCCAATAATA
ATATACAAAACGGTACTCTACTACTCGTAGGAAATTTATTAATCTTTGATTGGAAG------------------------
-----GGAGTACATTATAAACCGTGGTCTCCGACTCTAATAATTCCAATATTAATGCTACTTTCTATCTTATCTTGTGAT
GGGATGTGATTAGTTCATCAGAAGAACATCATCGGAAGGACTACTCATGGACTGCGAGATGCTGGCAATCAACAACAACC
AGGGTGTAGGCGTTGCAATCATAATGGGGCCAAACTTCTTAGCTCACAAGGGTTACCAACAAAGTCCACCTGAGGTGCAT
AGCACAACATAACATCCTCTTGATCTCCTATAATATACTAACCTCCTTACCCACTTCAGAACAACCGAGTATTGCATTGG
CACATAATGCGATTCATTTCAACAATGTTGTTGCAGGATTTGGCCCTCGCACAAATGTTGGTGAGGCCTGGAAACCAGTT
CGTGTATGATCCAGTGATGAAGGACGCAGGGCTGCTCACCAAAGGCAACTATGGGTCGGTGAAGAAGCTATACGTGGTTG
CCAAGGCGGATGTCTCCAGCACCGAGGAGATGCAACGCTGGATGGTGGTTCTGAGCCCTGGCACGGAAGTCGAGGAGATC
GCAGGAGCTGACCACGCCATCATGATCTCCAAGCCCAAGGAGCTATGTGATGTCCTAGTCAAGATAGCGAATAGCTTAAA
TATTTACTAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>chr3D_1_TraesCS3D01G446000
TGCCGACCACATATCTGATCGCTTTTGGGTTTTTTTTTTCTTTTTTCTCGCCTACACATAGCTTTGGTCTTATATGACTT
TGCTATTTGCCAGCATGTTTTCGCGTTTGTGTTGGCTGTGTGCATCCTAGCTATGCAGAGGCCGGGTGTGTGCTCATTGT
GTTATGTATCTTCTTGATGCTTCATTTTGAGCAAATAAAATCCACCCTTTATCGAAAAAAAATGTGCATGAGTATAATTG
CATTTCACAAACAAAAAAGGTTCGGCATAATTGCAGCGAACTTAAATATGTTTGGACCGCACTTATCAACTCTTCAAATA
GAATGGAGGATGTGGTGGCAAACAAAAAAAATGTCATCTCAAAACATTCTTCCTCCATCCGAAAATTTTTGGCCCTCAAA
TAAATGTATCTAGCATCAAGTTAGTGTGAGATACATCTATTTGAGAGACAAGTTTGGGACAAGCTTTCTCGGACGTAGGG
AGTACCAGCTATCTTTGTTGACACTCGGGAGATATTAGTTCGCACATCTTGGATGAACCTGA----GAGTAGTTACTTCA
GCTTACAAATAGCCTCCTCAAATTAGCTTCTCCGTTTCTTTATTGATAAAGGAATTGGAAATCTTTTGCACCGGCGTGTA
GAAGTAGAACTGAACATGCCTCCTCGTTTGTTAAGCCGGAGTTTTAAGTG--TGTCTCTGCCTTGCGTCACCATCAATCA
AACGCTCGTGGCTTGTCTACTAGCTATCTTGCTGGTCAAGCGAATCCGATGCAATTTACTACTCGATCCTGGATATATTA
TTGTTTCCTTGAAACCCGCTGTACGAACGTCCAAAAACTTCACCAGAAGCTGATAGAGACACTACGCGTCAAATTAACCT
CACCAGACAAATTATGTCAGCTGATAG-TTACAAGCTATCGGCAAAGACCAATTTGCGTTATAAATATCAGGCCATGCGC
GCGGCAACAGACATCCAACACAAAACCAAACAAATTTTACA-----CAAG--AAATGGAGAGCACTCAGAGCAGCAAGAG
CAACAGCGTGAGGAACCATTTCATCCTGGTTCACGGCCTCTGCCACGGGGCGTGGTGCTGGTACAAGGTGATCGTGGCGC
TCGAGGCCGCGGGGCACCGCGTCACGGCGGTTGACCTCGCCGCGTCCGGCGCCCACCCAGCGCGCATCGACGAGGTGCAC
TCGTTCGAAGAGTACTCTCGGCCGCTGCTCGACGCGGTGGCCGCGGCTCCTGAAGGTGGCAGCGAGAGGCTGGTCCTGGT
CGGGCACAGCCACGGCGGCCTCAGCATCGCGCTAACAATGGAGAGGTTCCCCGGCAAGGTCGCCACGGCCGTGTTCGTGG
CAGCCGCGATGCCGTGCGTTGGCAAGCACATGGGCGTCACAACCGAGGAGGTATGTCAATTGTTCAAGGGTTTCTTATTC
TC-------------CGTTGACTCAAAGTTTCACTCTGTATTTCACTGCCGTGTATATGCG--AAAAAATAGAGAAGACT
TATCACATCACATCTCGTCTC-----------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AGTCGTATAATATACTTCCTCTAATCCGAATTAATTGACGGAACATC
TATACAATATCTAACATTGGATAGAGGCCATGTC----------------------------------------------
-------------AACATTATATAAGT--TACTTCAATTAATTCGGACACAAGGGAGCTCAATATTTTATCAAAAATGCT
GCACCTACGTAGGCTCTTACTTAATGTTACGTAACCTTCCTTCCTATAAACTGATCAGCCCCCCCTGATTTTTCACGAGG
TGGGCCGGGGCTGTTTTTACTTCCAACCAAATCTGGCCACATAAGCTTCTACGTAAGTTTCGTAAGACTTATTACGTAGA
TGTAGCAAAACTCATATATTATATGCTTTGAATATGTAACTTTCACAACTAGTTCTTGTAGAAACA-TATATAATTGTAT
AGTACTCGATAAAATTACAACATGATGAATATATCTTCCAAAATGAATAGCTATGCATGATTTTTAATTATCCAATAATA
ATATACAAAACGGTACTCTACTACTCGTAGGAAATTTATTAATCTTTGATTGGAAG------------------------
-----GGAGTACATTATAAACCGTGGTCTCCGACTCTAATAATTCCAATATTAATGCTACTTTCTATCTTATCTTGTGAT
GGGATGTGATTAGTTCATCAGAAGAACATCATCGGAAGGACTACTCATGGACTGCGAGATGCTGGCAATCAACAACAACC
AGGGTGTAGGCGTTGCAATCATAATGGGGCCAAACTTCTTAGCTCACAAGGGTTACCAACAAAGTCCACCTGAGGTGCAT
AGCACAACATAACATCCTCTTGATCTCCTATAATATACTAACCTCCTTACCCACTTCAGAACAACCGAGTATTGCATTGG
CACATAATGCGATTCATTTCAACAATGTTGTTGCAGGATTTGGCCCTCGCACAAATGTTGGTGAGGCCTGGAAACCAGTT
CGTGTATGATCCAGTGATGAAGGACGCAGGGCTGCTCACCAAAGGCAACTATGGGTCGGTGAAGAAGCTATACGTGGTTG
CCAAGGCGGATGTCTCCAGCACCGAGGAGATGCAACGCTGGATGGTGGTTCTGAGCCCTGGCACGGAAGTCGAGGAGATC
GCAGGAGCTGACCACGCCATCATGATCTCCAAGCCCAAGGAGCTATGTGATGTCCTAGTCAAGATAGCGAATAGCTTAAA
TATTTACTAAATTGGAACAAAAATGACTTTATTTGAAATAAATTCATGTATCATGTGTG----TAAATCTCTAGAGATGT
ATGTATGATATAAATTTGATGGGTCTATGATATAAATCTCTAGAGATGTGGTTCGTTGGGCTCGCCTAGGAGTTGCAGGC
TCACGCGAGCTGGACGAAATCCAACGACCGCGCTAACAGACCATGGAGAGGCGAGTCTTGCAGGGATGAGATGGATGCAG
GCTGCCGACACCATGGGAGGTGGTTCCGTGGTTGGGTGTGCCGTGGGGAGCAGCAACGGGGTCGCGGAGCTTGGGAGGTG
GCGGGTGGCGGGGGGAGGTTGGGTGAGCACCGCGGTGACTAAGGGCCCCCCGACTGTGGGTGGTGGAGTCCTGGCGCGTG
GTGAGGCGAGGCTTCGGTGACACGTGGTGGTACGGGGCTCCGGCGGCACGAGGTGGTGCGGGCCTCGAGCGGCGCATGGT
GGTGCGGGGCTCCGGTGTCGCATGGTTGTGCGTGGGCACGACGTGGGGAGGAAGAAGGCGGGANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGTGTTGGGTGGTGGGGCTAGGAGTTCTATTTT
GTTTGTGCAGTTCGGTCGGGTTTGAGGGGTAGGTTCGGACTGATGGGTTTTTGCAATGCCGAAGAGTTAGTAAAATAAGA
TTTTGTTAGTAGAATAAGATCTTAAGGGTGTTAGTACAATATATCCACCCTCTC
>chr3B_225
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TGCATGAGTATAATTG
AATTTCACAAACAAAAAAGGTTCGGCATAACTGGAGCGGACTTAAATATGTTTGGACTGCACTTATCAACTCCTCAAATA
GAATGGAGGATGTGGTGGCA---AAAAAAAATGGCATCTCAAAACATACA------------------------------
--------------------------------------------------------------------------------
------AGCTATCTTTGTTGACACTCGGTAGATATTAGTTCCCACATCTTGGCTTAACTTGAGACTGAGTAGTTACTTCA
GCTTACACATAGCCTCCTGAAATTAGCTTCTCCGTTTCTTTATTGATAAAGGGC-TGAAAATCTTTTGCACCGGCGTGTA
GAAATAGATCTCAACATGCCTCCTCGTTTGTTAACCTGGAATTTTAAGTGTTTGTCTCTGCCTTGCGTCACCATCAATCA
AACGCCCGTCGCTCGTCTGCTAGCTATCTTGCAGGTCAACTGGATCTGATGCAATTTACTACTCGATCCTGGATGTATGA
TTGTTTCCTTGGAACCCGTCGTACGAACGTACAAAAACCTCACCAGAAGCTGGTAGAGACTCTACGCGTCAAATGAACCA
CACCAGATAAATTATGTCAGCTGATAG-TGACAAGCTATCGACAAAGACCAATTTGCGTTATAAATATCAGGCCATGCGC
GCGGCAACCAACATCCAACACAAAACAAAACAAATTTTACA-----CAAG--AAATGGAGAGGATCCAGAGCAGCAACAG
CAACAGCGTGAGGAACCATTTCGTCCTGGTTCACGGCCTCTGCCACGGGGCGTGGTGCTGGTACAAGGTGATCGTGGCGC
TCGAGGCCGCGGGGCACCGCGTCACGGCAGTCGACCTCGCCGCGTCCGGCGCCCACCCAGCGCGCATCGACGAGGTGCAC
TCGTTCGAAGAGTACTCTCGGCCGCTGCTCGACGTGGTGGCCGCAGCTCCCGAGGGTGGCAGCGAGAGGCTGATCCTTGT
CGGGCACAGCCACGGCGGCCTCAGCATCGCGCTAACGATGGAGAGGTTCCCCGGCAAGGTCGCCACGGCCGTGTTCGTGG
CAGCCGCGATGCCGTGCGTTGGCAAGCACATGGGCGTCACAACCGAGGAGGTATGTCAATTGTTCAAGGGTTTCTTATTC
TC-------------CGTTGACTCAAACTTTCGCTCTGTATTTCACTGCCGTGTATATGCGAAAAAAAATAGAGAAGACT
TATCACATCACACAGAGCCAAGAGGTCTTGAGTTCAAGACCCGACTGAGGCAAGTAAATTGCAGCCCATTTTCAGTCCAC
GTTTAGGCTTGAGGGAGCCACACGTGAGGGGAATGTTGACGTATAATGTGCAGCCTAGTCTCTTCCATCAGATCGGTCTT
TTGGTTGCATTGGCTAGCACATGCACTTCTACAAGTTATATAATATACTTTCTACAATCCGAATTAATTGACGGAACATC
TATACAATATCTAACATTGTATAGAGGCTCCCTAAAAAAAAAATCATTGTATAGAAGCTGCATCAACCTTATATAGAGGC
TACCCGCAAAAAAAACATTATATAGAGGCTACTTCAATAAATTCCGATGCAAGGGAGCTCAATATT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTATATGATTTGAATATGTAACTTTCACAACTAGTTGTTACAGTTACATTATGTAACTGTAT
AGTACTCGATAAAATTACAACATGATGAATATATCTTCCGAAATGAATAGCTATGCATGATTTTCTATTATCCGATAATA
ATATTCAAAACAGTACTCTACTACTCGTAGGAAATTTATAAATGTTTGGATGAAAGTTATATATATCTGCTTTTTGTTGT
TGGAAGGAGTACGTTATAAACCGTGGTCTCTAACTTTGATAATTCCAATATTAATGCTACTTTTTATCTTAACTTGTGAT
GGGATGTGATTAGTTCATGAGAAGAGCATCATCGGAAGGACTGCTCATGGACTGCGAGATGCTGGCAATCAACAACAACC
AGGGTGTAGGTGTTGCAATCATAGTGGGCCCAGACTTCTTAGCTCACAAGGGTTACCAGCAAAGTCCACCTGAGGTGCAT
AGCACAGCTTAACATCCTCTTGATCTCTTATAATATACTAACCTCCTTACCCACTTCAGAACAACCGAGTATTGCATTGG
CACATAATGCGATTCAATTCAACAATGTTGTTGCAGGATTTGGCCCTGGCAAAAATGTTGGTGAGGCCTGGAAACCAATT
CGTGGATGATCCAGTGATGAAGGACGCAGGGCTGCTCACCGAACGCAACTATGGGTCGGTGAAGAAGCTATACGTGGTTG
CCAAGGCAGATGTTTCCAGCACTGAGGAGATGCAACGCTGGATGGTGGTTCTGAGCCCTGGAACGGAAGTCGAGGAGATT
GCAGGAGCTGACCACGCCATCATGAGCTCCAAGCCCAAGGAGCTATGTGATGTCCTGGTCAAGATAGCCAACAACTTCAA
TATTTAGCAAATTGGAACAGAAATG---TTGTTTGAAATAAATTCATGTATCACGTATGTAATTAAATCTCTAGAGATGT
GTTTATGATATACATTTGATGTGGGTATGATATAAATCTCTAGAGATGTGGTTCGTTGGGCTCGGCCGGGAGCTGCGGGC
TCACTCGAGCTGGACGAAATCCAACGACCGTGCCGACAGGCCGTGGAGAGGCGGATCTGGTGGGGATGATATGGATG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------
>chr3A_893
--------------------------------------------------------------------------------
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------------------AGCTGATAACTGATAAGCGTTCGAGCAAGCCCAATTTGCACTATAAATATCGCTCCGTGTGC
GCGGCAACAAACATCCAACACAAACCAAA-CAGGTTTTACGCTACGCAAG--AAATGGAGAGCACCC---------AGAG
CAACAGTGTGAGGAGCCATTTCATCCTGGTGCACGGCCTCTGCCATGGGGCTTGGTGCTGGTACAAAGTGGTCGCGGCGC
TCGAGGCCGCGGGGCACCGCGTCACGGCGATCGACCTCGCCGCTTCGGGTACCCACCCGGCGCGCGTTGACGAGGTGCAC
TCGTTCGAGGAGTACTCGCGGCCGCTGCTCGACGTGGTGGCCGCGGCGCCGGCGGGTGACGGCGAGAGGCTGATTCTGGT
CGGGCACAGCCACGGCGGCCTCAGCTTGGCGCTAGCCATGGAGAGGTTCCCCGGCAAGATCGCCGCTGCCGTGTTCGCGG
CCGCCGCGATGCCGAGCGTCGGGAAGCACATGGGCGTCACCACCGAGGAGGTATGTCAATTGTGGATGGTTTTCTTTTT-
--------------------------------------------------------------------------------
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>chr3D_918
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AAGCCCAATTTGCACTATAAATATCGGTCCGTGTGC
GCGGCAACAAACATCCAACACAAAACCAAACAGGTTTTACGCTACGCAAG--AAATGGAGAGCACCC---------AGAC
CAACAGCGTGAGGAACCATTTCATCCTGGTGCACGGCCTCTGCCACGGGGCGTGGTGCTGGTACAAGGTGGTCACGGCGC
TCGAGGCCGCGGGGCACCGTGTCACGGCGGTCGACCTCGCCGCGTCCGGCGCCCACCCGGCGCGTGTCGACGAGGTGCAC
TCGTTCGAGGAGTACTCCAGGCCGCTGCTCGACGCGGTGGCCGCGGCTCCGGAGAGGGGCGGCGAGAGGCTGATTCTGGT
CGGGCACAGCCACGGCGGGCTCAGCTTGGCGCTAGCCATGGAGAGGTTCCCCGGCAAGGTCGCCGCCGCCGTGTTCGCGG
CCGCCGCGATGCCGAGCGTTGGCAAGCACATGGGCGTCACCACCGAGGAGGTATGTCAATTGTGTATGGTTTTCTTTTT-
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------
>chr3B_918
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AAGACCAGTTTGCACTATAAATATCGGTCCGTGCGC
GTGGCAAGAAACGTCCAACACCCAAACAAA----TTTTACA-----CAGGAAAAATGGAGAGCACTC---------AGAG
CAACAGCGTGAGGAACCATTTCATCCTGGTGCACGGCCTCTGCCACGGCGCGTGGTGCTGGTAAAAGGTGGTCGCGGCGC
TTGAGGCAGCGGGGCACCGCGTCACGGCGGTCGACCTCGCCGCTTCTGGCGCCCACCCGGCGCGCGTCGACGAGGTGCAC
TCGTTCGAGGACTACTCGCGGCCGCTGCTCGACGTGGTGGCCGCGGCGCCGGAGGGTGACGGCGAGAGGCTGATTCTGGT
CGGGCACAGCCATGGCGGGCTCAGCTTGGCGCTAGCCATGGAGAGGTTCCCCGGCAAGGTCGCCGCCGCCGTGTTCGCAG
CCGCCGCGATGCCGTGCGTTGGCAAGCACATGGGCGTCCCCACCGAGGAGGTATGTCAAATGTGGATGGTTTTCTTTTTG
TTATTCTCTGTTGAGCGTTGACCAAAACATCCACTCTGTACCAGTCCCCTAGGCATACAAGAAAAGGTACCCCTTTTCTA
TATAGAGTGGTCTATACCATGTCTTCTATCAAACATCCACGCTATGTATACTAGAAAATG--------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
TACCCCATATCAAATTTTGTATATTTGACTATGTCGACTCTGTATCAAGTATCTAATACAA-------------------
---------------------------------------------------------------ATT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TGATATGCTTCGAATATGCAACTTTAACAAAAAGTTTCTGTTGTAAAATATGTATATTGCAT
AATAGTCCATAAAATTACAACACTATGAAGATATATTCCATGA-----ACCTATACATGCTTTTCAAGTATCTAATACTA
AAAAAATGATAAAGATAATCAAATTAT-------------AATGTTTGAAGAAATGTTATATGAACCATTTTTTGTTGG-
------------AATATAAAAGGTGGTCTCTGACTCTG-TAACTCCAGTATTAATGTTAATTTTTATCTTATCTTGTGAT
T-GATGCAATTAGTTCATGCGAAGAACATCATCGGAAGGACTACTCATGGACTGCAAGATGCTGCCAATCAGCAACAACC
AGGGTGCAGGGGTTGCAATCATAGTGGGCCCAGACTTCTTAGCACGCAAGTATTACCAGCAAAATCCACCTGAGGTGCAC
AACACAATTTAACATCCTATTGATCTCCCTTTAATGAACTAATCT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------
>chr3B_922
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CCAATGTGCAATATAAATATCAAGCCGTGTGC
GCGGCCACAAACATCCAACACAAAACAAAACAAATTTTACA-----CAGG--AAATGAAGAGCACTCAGAGCAACAGCAG
CAACAGCGTGAGGAACCATTTCATCCTGGTGCACGGCCTCTGCCACGGCGCGTGGTGCTGGTACAAGGTGGTCGCGGCGC
TTGAGGCAGCGGGGCACCGCGTCACGGCAGTCGACCTCGCCGCTTCCGGCGCCCACCCGGCGCGCGTCGACGAGGTGCAC
TCGTTCGAGGAGTACTCGCGGCCGCTGCTCGACGTGCTGGCCGCGGCGCCGGAGGGTGACGGCGAGAGGCTGATTCTGGT
CGGGCACAGCCATGGCGGGCTCAGCTTGGCACTAGCCATGGAGAGGTTCTCCGGCAAGGTCGCCGCCGCCGTGTTCGCAG
CCGCCGGGATGCCGTGTGTTGGCAAGCACATGGGCATCACCACCGAGGAGGTATGTCAATTGTTTATGGTTTTCTTTTTC
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
S-----------------------------S--S----S------------------S--------------S-------
--------------------SSS----------S-------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----------------------S------------S----------S-S---S---------------------
-------S----------S---------------------------------SSS--S----------------------
---S----S--S----------------------S-S---S---------------------------------------
-----S---S---S----S-------------S------SS-S---S---------------------------S---S-
-----------S------SS----------S-------S-------------S-------S-------------S----S
-------S---------------------S-----------S--------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------S--S------------------S-------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
-------------S-S-S--S-----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------SS------------S--SS-------------------------
-------------------S---------SSS-S----------------------------------------------
------------------------SSS-----------S-----S--SS-----------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS------------------------------------S------S--------S---------
----------------------------------------------------------------S---------------
-----------S---------------------------S---S-----S--S---------------------------
------------------------------S------S-------------------------S----------------
------------------S-------------------------------------------------------------
----------S------------S----S---S-------------------------S---------------------
--------S-----------------------------------------------------------------------
----------------S------------------------------S---S-------------------------S--
----S-----------------------------------S--S------------------------------------
-------S-----S--------S--------------------------------------S-----------------S
-------------------------S------------------------------S-----------S--S-S---S--
------SS-----------S-----SSS--S----------------------S--S-----------------------
S-S---------S--------S-SS---------------------------------------S-SS----S---S---
----S-------------------------S--SS----S--S----------SS---S-SS-------S-------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_739
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
AACGCTCGTGGCTTGTCTA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------
>reverse_2764
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------GGCAACTATGGGTCGGTGAA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>forward_2358
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------AACCGTGGTCTCCGACTCTA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>reverse_3857
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------CGGGTTTGAGGGGTAGGTTC--------------------------------------------
------------------------------------------------------
