>input_sequence_45311
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------------------------------CGGTGAC
ATCTCTCTGCATAGTGGTCGACATGGCGGCGGAGGGCGGGAGCAGGGAGGACAGGTGGACCCTGGCCGGCGCCACGGCGC
TCGTCACAGGCGGCAGCAAAGGAATTGGGTACGCCATCGTGGAGGAGCTCGCCGGGTTCGGGGCGAGGGTGCACGCCTGC
TCCCGGAACGCGGCGGAGCTGGAGCAGTGCCGCCGGCGGTGGGAGGAGAAGGGTCTGCATGTCACCGTCTCCGCCTGCGA
CGTCTCCGTGCGCGCCGACAGGGAGGGGCTCATGAGCACAGTCCGGCAGACCTTCAACGGCAAGCTGGACATACTAGTGA
GTTATATGTGT--C--------GTGA----ATCATGTGTG-------------TCTTCTGAATTGCTAGGGCCTAGTGAT
CGAGAGTATGTATATGTATGTAC-GTAGGTGAACAACGCGGGGCAACTGCTGGTGAAGCCCACCGTGGAGTGCACGGCGG
ACGAGTACTCCAAGGTGATGGCTACCAACCTGGAGTCGAGCTTCCATCTCTGCCAACTCGCGCGCCCTCTTCTGGTACAC
GCC---------GGAGGAGGCAGCATCATCAACATGTCCTCCATTGGAGGCTCCATCGGTTTTGTTGGCTCCGCAATCTA
CGCTATCACAAAAGGTGCATGCTCCCTCCATT-------TTAAAATGTGTTGTACGCTAATTAATTTTGGCAT-------
--------AAGTTCATTGCAGAA-------AAAGATGTAACAACATTTCCTTTTTTGCAAATAAAATATAACAACATTGA
CAACACCAAATTAACAGTCGATCCATCATGACTATATTTTATAGTCCCTCCGTCTCAAAATAAGTGTCGCTGATTTAGTA
CAAATTGACTACTAAATCAGCGACCCTTATTTTAGAACGGATGAAGTACTATTTATAGTCATTTGGTATTTAGATGTTAA
CTTTTTATATATAAACTTAGTCAAACTTTATAAAGTTTGAACTAACACAAAAGCTAATATGGAGTGACGGATGTGAACTT
ATATTTGTCATGCATGTTCGCTTTTTTTCTTTGTCATGCATGGTTGTCCTTTTTTTTGTCATGCATGGTTATCTTTCTGC
TCCTTTATTATGTTGTTTATATGTAGGTGCAATGAACCAGCTTACTAGGAGTTTGGCCGCCGAGTGGGCTCCCAACAAGA
TCCGTGTGAATGGCGTGGCCCCAGGATTTATCACAACCGATATGATCAAAGATGTACGG---ATATAACCTAGTAGGAAG
CATAGGTTTATCTTTTTTAAACAACAGCACATGGATTTTAAACAACTTAAAATTCTATGAGATAATAATAAGTTCAGTTT
TACATGGGGAGTAAAAGGGTTCCAACATCTCATATGTTCTTGTGGACATATTGGGCAGATGGACACAGAGTCCTTGGAGC
GGGAGCACTCAAAGTCCCCATTACTGCGGAGCGGCAAGCCGGTGGAGATCGCCTCGGCGGTGGCATTCCTATGTATGCCG
GCAGCTTCCTTCATCACCGGCCAGGTCATTTGTGTCGATGGCGGTCGAACTATTAGCGCTTAATTAGCCAGCACCACCAC
TGCATAAGTTACTCGG-CGAATAGTTAAGGAGAGTGTGGGAGAGTCAAACAAAAATTAGTGAATAGATAAATAAATTAGC
GATGCCAACTAGTGTCATCATGTACAATAAGTATATGTCAGTATGTAGTGTGGATTTCTACAAAGTTTCTGTA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr5D_1_TraesCS5D01G530100
GGAAGAGGGGAGAAGGAACCGCCCACACCGCCTAATGAGGAAGAGAGCCGTTTGCAGGAGAGGAGATAATGGCGGGCCCC
ACCCAGGCGATTCGCTCGGCTCGACCGTATTCCACCTGACCCCACCACCACGCGCCTCGCCCCGACCAGGTTACACCTGG
CCCGACCGCGCGCGGTATGGCGACGGATCGGACGGCTATCGCTGTGTGTGCTCGGGGCATCCGTTTAGTGCACGCGCACT
TTTAAGAAATTAGGTTTTTTGAAAGGCTAACCATAACATTGAAAAACACGTTCCAAAAACTGAATGACATTTGAATCCTT
CAAGATACAAAACTAGTCAGTAGTACGTTCTACATTGGTTAACCATGCGTTGATCTTAGGTGGCTTAGCTTTAGAGAGCT
TA--GGGACGAGAGGATTCGAGGGAAGGGCGCAGACGGGCTCGGAAACACCCGGAGACCGAAT------GGATTGACCAA
GATGAACTGATAAGGCTCACGGAGGGGCTCGGCTCGAGCCGACGAGCGGCATGTGCATCTGGTTGAGGTGGCGGTGCCGT
GAAGTGCTCGGGCCGAGCTGGCGGTCGCGCATGGCTTCCGCGTGGCGGCTGAGC-GGCCCGCGACGAGGTCTAATAGTGG
CGGCGCAACCGGGGATAAGGCTCCGGCAGGTAGACCAGACCCGC-GCATGGGAGTGACGCAGGGGACGACGGCGCCGCAC
TGGCATCGCAGGGGCGCTCTCCTATCGTGGCGTGCACGCGCTCTGGCCACGCCGCGCGCGCATAGGACATGCCGCTCAT-
----------------GCTCCCGGCGCGTGGCCCGGCCTCTGACTAAGATATTTCGCCCGCCCGTGTCTCTACTCAGGAA
GCCACGTGACGCCGCACTCGGAACTTTGGAAGTTAGT-GAGGCGGCCGCTCAACGTTGTCAGCTTCGCTGTTGTCTTGGC
GCGTGC-----CTTCCTGGCTATAAATGTCAACCAACTAGTGCCAAAATGGTCTTAGGATTACGAAACAAATTCGGTGAC
ATCTCTCTGCATAGTGGTCGACATGGCGGCGGAGGGCGGGAGCAGGGAGGACAGGTGGACCCTGGCCGGCGCCACGGCGC
TCGTCACAGGCGGCAGCAAAGGAATTGGGTACGCCATCGTGGAGGAGCTCGCCGGGTTCGGGGCGAGGGTGCACGCCTGC
TCCCGGAACGCGGCGGAGCTGGAGCAGTGCCGCCGGCGGTGGGAGGAGAAGGGTCTGCATGTCACCGTCTCCGCCTGCGA
CGTCTCCGTGCGCGCCGACAGGGAGGGGCTCATGAGCACAGTCCGGCAGACCTTCAACGGCAAGCTGGACATACTAGTGA
GTTATATGTGT--C--------GTGA----ATCATGTGTG-------------TCTTCTGAATTGCTAGGGCCTAGTGAT
CGAGAGTATGTATATGTATGTAC-GTAGGTGAACAACGCGGGGCAACTGCTGGTGAAGCCCACCGTGGAGTGCACGGCGG
ACGAGTACTCCAAGGTGATGGCTACCAACCTGGAGTCGAGCTTCCATCTCTGCCAACTCGCGCGCCCTCTTCTGGTACAC
GCC---------GGAGGAGGCAGCATCATCAACATGTCCTCCATTGGAGGCTCCATCGGTTTTGTTGGCTCCGCAATCTA
CGCTATCACAAAAGGTGCATGCTCCCTCCATT-------TTAAAATGTGTTGTACGCTAATTAATTTTGGCAT-------
--------AAGTTCATTGCAGAA-------AAAGATGTAACAACATTTCCTTTTTTGCAAATAAAATATAACAACATTGA
CAACACCAAATTAACAGTCGATCCATCATGACTATATTTTATAGTCCCTCCGTCTCAAAATAAGTGTCGCTGATTTAGTA
CAAATTGACTACTAAATCAGCGACCCTTATTTTAGAACGGATGAAGTACTATTTATAGTCATTTGGTATTTAGATGTTAA
CTTTTTATATATAAACTTAGTCAAACTTTATAAAGTTTGAACTAACACAAAAGCTAATATGGAGTGACGGATGTGAACTT
ATATTTGTCATGCATGTTCGCTTTTTTTCTTTGTCATGCATGGTTGTCCTTTTTTTTGTCATGCATGGTTATCTTTCTGC
TCCTTTATTATGTTGTTTATATGTAGGTGCAATGAACCAGCTTACTAGGAGTTTGGCCGCCGAGTGGGCTCCCAACAAGA
TCCGTGTGAATGGCGTGGCCCCAGGATTTATCACAACCGATATGATCAAAGATGTACGG---ATATAACCTAGTAGGAAG
CATAGGTTTATCTTTTTTAAACAACAGCACATGGATTTTAAACAACTTAAAATTCTATGAGATAATAATAAGTTCAGTTT
TACATGGGGAGTAAAAGGGTTCCAACATCTCATATGTTCTTGTGGACATATTGGGCAGATGGACACAGAGTCCTTGGAGC
GGGAGCACTCAAAGTCCCCATTACTGCGGAGCGGCAAGCCGGTGGAGATCGCCTCGGCGGTGGCATTCCTATGTATGCCG
GCAGCTTCCTTCATCACCGGCCAGGTCATTTGTGTCGATGGCGGTCGAACTATTAGCGCTTAATTAGCCAGCACCACCAC
TGCATAAGTTACTCGG-CGAATAGTTAAGGAGAGTGTGGGAGAGTCAAACAAAAATTAGTGAATAGATAAATAAATTAGC
GATGCCAACTAGTGTCATCATGTACAATAAGTATATGTCAGTATGTAGTGTGGATTTCTACAAAGTTTCTGTATTTGACA
TATTTTTAATGGTTGCTGGTTTTACACTGTAGATGGATGGGGCACTATTGTTCTGTTAGTACTGGAAAATACATAGTGGT
ATTCTAGTGAGCAATTGAACCACCCTTTCCTTGAGTGGATATAGCCACCAATGTGTTAACCAAATTTTGTTCCACTAGTA
GTCGTGATTTGTTCCACTTAGTCCAAATTTTTGTTCACCCATAAATAGAATGGGTTCCAGTAGTGGACGTAATTTGTTCC
ATGAGCATTGAGACATTTTTCACTTGGTCTAGATATTTGTTTAGCCATCAATTATCTGTGTCTATGTGTATTTGGGCTTG
ACATGAGCACTGAATTTTG-TTCCACTAGTAATCATAATATATTTCACTTAGCTCAAATATTTGTTTCTCAAAGAAATAA
ATATTGTTCCACTAGTAGTCAGTGATTTATTGCATTTACACTGTCAATTTGTCAACTTAGTCCAGGTATTTGTTTCACTA
GTAGCTGTGAATTATCTGTGTATGTATTTGTTCTGTGCGTCAGAACTAGTTTTTCTTCTAGGCCCAAATTTTTGTACCGC
TAGTGATCATGATTTATTCCACAAAAATTAACACTAATTTCTATACCAGCAGCAATAAAACTTCATTCCTTTAGAAGTCG
TTCCTCTCCACAAGCACTAACATTATTTCCACCTAGTTTAGATAATTATATCCCTAGTAGACATGAATTTATGTGTGCGT
GTAAATTGAGATGTGTGTGTGCGTGCGTGCTTCTAAATATTTGATCCAAGAGCAAAAGTTCCAGGTCATAATTAGTCTCG
CGACATCTTCCTTCCTGGACTCGGTCAAATGTTCCCGTACATATCATCTAGGAACACAGGATATTGCAAATAAAGAAATT
CAGCCAAGGTGTTATCCATTGAAATGCCGATCAGGCATAGTGGATGTAAGATACTCTTAAAATAATACCCCCTCCGTCCC
AAAATAAGTGCCTTACAAATTTGTACTAGAGGTA
>chr5B_374
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TCTTAGCTGTCTTAGCTTATAGCTAGC
TTAGGGAAAGAGGGCATTCGAGGGAGGGGC-------GGCTCGGAAACACCCGGAGACGAATGTGCCTAGGATTGGCCAC
GATGAACTGATAAGGCTGACGAAGGCGGCTCAACT-------CGAGCGGCATGTGCACCTGGTCGAGGTGGCGGTGCCGA
GAAGTGCTCGGGCTGAGCTGGCGGCGGCGCATGGCGTCGGCCTGGCGGCTGAGCGGGCCCGCGGCAAGGTCTAATAGTGG
CGGCGCAA-CGGGGATAAGGCTCCGGCAGGTAGACCAGACGCACAGCATGGGAGTCACGCAGGGGACGGCCGCGCCGCAG
TGGTATCACGCAAGCGCTCTCCTATCGTGGCGTGCACGCGCTCTGGCCACGCCGCGCCACGCAAAAGGGCATGC------
---------TGCTCGCGCTCCCGGCGCGTGGCACGACCTCTGACCAAGATATTTTTCCCGCTTATGTCTCTACTCAGGAA
GCCACGTGAGGCCGCACTCGGAACTTTGGAAGTCAGT-GAGGCGGCCGTTCAACGTTATCAGCGTCGCTGTTGTCTTGGC
GCGTGC-----CTTCTTGGCTATAAACGTCAACCAACTAGTGCCAAAATGGTCTTAGGATTAGGAAGCAAATACGGTGAC
ATCTCTCTGCATAGTGGTCGACATGGCGGCTGAGGGCGGGAGCAGGGAGGAGAGGTGGACCCTGGCCGGCGCCAGGGCGC
TCATCACCGGCAGCAGCAAAGGGATCGGGTACGCCATCGTGGAGGAGCTCGCCGGGTTCGGTGCGAGGGTGCACGCCTGC
TCCCGGAACGCGGCGGAGCTGGAGGAGTGCCGACGGCGGTGGGAGGAGAAGGGCCTGCATGTCACCGTC-----------
----TCCGTGCGCGCCGACAGGGAGAAGCTCATGGACACCGTCCGGCAGACCTTCAACGGCAAGCTGGACATACTAGTGA
GTTATATGTGT--CTGTAAACTGTGGATCGATCATGTGTG-------------TCTTCTGTATTGCTAGCGCCTAGCGAT
CGGGAGTATGTATATGCATGTACTGTAGGTGAACAACGCGGGGCAGCTGCTGGTGAAGCCCACCGCGGAGTGCACGGCGG
AGGAGTACTCCAAGGTGATGGCTACCAACCTGGAGTCGAGCTTCCATCTCTGCCAACTCGCGCGCCCTCTTCTCGTACAC
GCC---------GGAGGAGGCAGCATCATCAACATGTCCTCCATTGGAGGCTCAATTGGCTTCGTAGGCTCCGCAATCTA
CGCTATCACAAAAAGTACGTGCTCACTCCATTGTCCATTTCAAGATAAATCTCAC----ATTAGTTTTAGTTTAAGTCAA
ATTTTGTGAAACTATATCAGCTTCAAGTTTCAAATAATTATTACATCATG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TATGTAGGTGCTATGAACCAACTGACCAGGAGTTTGGCCACCGAGTGGGCCCCTGACAAGA
TCCGTGTGAACGGTGTTGCCCCAGGATTTATCACAACCGATATGATTAAAGATGTA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr5B_600
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GCTGAGCGGGCCCGCGGCAAGGTCTAATAGTGG
CGGCGCAA-CGGGGATAAGGCTCCGGCAGGTAGACCAGACGCGCAGCATGGGAGTCACGCAGGGGACGGCGGCGCCGCAG
TGGTATCACGTAGGCGCTCTCCTATCGTGGCGTGCACGCGCTCTGGCCACGCCGCGCGCGCAGATGGCATGCCGCTCGCG
CAGATGGCATGCTCGCGCTCCCGGCGCGTGGCCCGGCCTCTGACTAAGATATTTCGCCCGCCCGTGTCTCTACTCAGGAA
GCCACGTGACGCCGCACTCGGATCTTTGGAAGTCAGTGGAGGCGGCCGCCCAACGTTATCAGCTTCGGTGT-GTCTTTGC
GCGAGCCCCAGCTTCCTGGCTATAAATGTCAACCAACAAGTGCCCTCT--------------------------------
---TCTCTGCATAGAGATCGAGATGGCGGCTGAGCGCGGGAGCAGGGAGGGGAGGTGGACCCTGGCCGCCGCCAGGGCGC
TCATCACCGGCGGCAGCAAAGGGATCGGGTACGCCATCGTGGAGGAGCTCGCCGGGTTCGGTGCGAGGGTGCACGCCTGC
TCCCGGAACGCGGCGGAGCTGGAGGAGTGCCGACGGCGGTGGGAGGAGAAGGGCCTGCATGTCACCGTCTCCGCCTGCGA
CGTCTCCGTGCGCGCCGACAGGGAGAGGCTCATGGACACCGTCCGGCAGACCTTCAACGGCAAGCTCGACATACTAGTGA
GTTCTATATGTGTCTGTAAACTGTGG----ATCATGTGTG-------------TCTTCTGTATTGCTAGCGCCTAGCGAT
CGGGAGTATGTATATGCATGTACTGTAGGTGAACAACGCGGGGCAGCTGCTGGTGAAGCCCACCGCGGAGTGCACGGCGG
AGGAGTACTCCAAGGTGATGGCTACCAACCTGGAGTCGAGCTTCCATCTCTGCCAACTCGCGCGCCCTCTTCTCGTACAC
GCC---------GGAGGAGGCAGCATCATCAACATGTCCTCCATTGGAGGCTCAATTGGCTTCGTAGGCTCCGCAATCTA
CGCTATCACAAAAAGTACGTGCATACTCCTTT-------TTAAAATGTGTTGTACGCTAATTAATTTTGGCATAAGTCAT
ACTTTATGAAGTTCATTGCAGAA-------AAAAATGTAACAACATTTG---TTTCGCAAATAAAATGTAACAACATTGA
CAACACCAAATTATTCA---------------------------------CGTCCCAAAATAAGTGTGGCAGAAATTGAG
T----------CTAAATCAGCGACCCTTATTTTACAAGGGAGGAAGTACTATTTATAGTCATTTGGGTTTTCGATGTTAA
CTTTTTATATATAAACTTAGTCAAACTTTATAAAGTTTGAACTAACACAAAAGCTAATATGGATTGACGGATGTCAACTT
ATATTTGTCATGCATGTTCGCTTT-TTTCTATGTCATGCATGGTTCTCCTTTTTTTTGTCATGCATGGTTATCTTTCTGC
TCCTTTATTATACTGTTTATATGTAGGTGCAATGAACCAGCTTACTAGGAGTTTGGCCGCTGAGTGGGCTCCCAACAACA
TCCGTGTGAATGGCGTGGCCCCAGGATTTATCACAACCGATATGATCAAAGATGTACGAAATATATAACCTAGTAGGAAG
CATAGGTTTATCTTTTTTAAACAACAGCACATGGATTTTAAACAAATTAAAGTTCTATGAGATAATAATAAGTTCAGTTT
TACATGGGGAGTAAAAGGGCTCCAACATCTCATATGTTCTTGTGGACATGTTGGGCAGATGGATACAGAGTCCTTGGAGC
GGGAGCACTCAAAGACCCCGTTACTGCGGAGCGGCAAGCCGGTCGAGATCGCCTCGGCGGTGGCATTCCTATGTATGCCG
GCAGCTTCCTTCATCACCGGCCAGGTCATTTGTGTCGATGGCGGTCGAACTATTAGCGCTTAATTAGCCAGCACCACCAC
TGCATAAGTTACTCGGGCGAATAGTTAAGTAGAGTGTGGGAGAGTGAAACAAAAATTAGTGAATAGACAAATAAATTAGT
GATGCCAACTAGTGTCATCATGTACAATAAGTATATGTCAGTATGTAGTGTGGATTTCTACAAAGTTTCTGTATTGGACA
TC-TTTTAATGGTTGCTGGTTCTACACTGTAGATGGATGGGGGGCTATTGTTCTGTTAGTACTGGA--------------
ATTCTAGTGAGCAATTGAACCACCCTTTCCTTGAGTGGATGTAGCCACCAATGTGTTAACCAAATTTTGTTCCACTAGTA
GTCGTGATTTGTTCCACTTAGTCCAAATTTCTGTTCACCCATAAATAAAATGGGTTCCAGTAGTGGACGTAATTTGTTCC
ATGAGCATCGAGACATTTTTCACTTGGTCTAGATATTTGTTTAGCCATCAATTATCTGTGTCTATGT-------------
-CATGAGCACTGAATTTATTTTCCACTAGTAATCATAATATATTTCACTTAGCTCAAATTTTTGATTCTCAAGAATAAAG
T--TTGTTCCACTAGTAGTCAGTGATTTATTGCATTTACACTGTCAATTTGTCAGCTTAGTCCAGGTATTTGTTTCACTA
GTAGCTGTGAATTATCTGTGTATGTATTTGTTCTGTGCGTCAGCACTAGTTTTTCTTCTAGGCCTAAATTTTTGTACCGC
TAGTGATCATGATTTATTCCACAAAAATTAACACTAATTTCTATACCAGCAGCAATAATACTTCATTCCATTAGAAGTCG
TTCCTATCCATAAGCACTAACATTATTTCCACCTAGTTTAGATAATTATTTCCCTAGTAGACATGAATTTATGTGTGCGT
GTAAGTTGAGATGTGTGTGTGCGTGCGTGCTTCTAA--------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------
>chr4A_1098
--------------------------------------------------------------------------------
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----------CGGCAGCAAAGGGATAGGGTACGCCATCGTGGAGGAGCTCGCCGGGTTCGGTGCGAGGGTGCATGCCTGC
TCCCGGAACGCGGCCGAGCTGGAGGAGTGCCGACGGCGGTGGGAGGAGAAGGGCCTGCATGTCACCGCCTCCGCCTGCGA
CGTCTCTGTGCGCGCCGACAGGGAGAGGCTCATGGACACCGTCCGGCAGACCTTCGACGGCAAGCTCGACATACTAGTGA
GTTCTATATGTGTCTGTAAACTGTGG----ATTTTGTGTG-------------TCTTCTGGATTGCTAGCGCCTAGCGAT
CGGGAGTATGTATATGTATGTAC-GTAGGTGAACAACGCGGGGCAGCTGCTGGTGAAGCCCACCGCGGAGTGCACCGCGG
AGGAGTACTCCAAGGTGATGGCTACCAACCTGGAGTCGAGCTTCCATCTCAGCCAGCTCGCGCGCCCTCTTCTCGTGCGC
GCC---------GGAGGAGGCAGCATCATTAACATGTCCTCCATTGGAGGCTCCATCGGCTTCGTTGGCTCCACCGTCTA
TGCTATCACAAAAGGTACGTGCTCACTCCATT-------TCAAGAT----------------------------------
--------------------------------------------------------------------------------
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>chr4A_1098
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------CGGCAGCAAAGGGATAGGGTACGCCATCGTGGAGGAGCTCGCCGGGTTCGGTGCGAGGGTGCATGCCTGC
TCCCGGAACGCGGCGGAGCTGGAGGAGTGCCGACGGCGGTGGGAGGAGAAGGGCCTGCATGTCACCGCCTCCGCCTGCGA
CGTCTCTGTGCGCGCCGACAGGGAGAGGCTCATGGACACCGTCCGGCAGACCTTCGACGGCAAGCTCGACATACTAGTGA
GTTCTATATGTGTCTGTAAACTGTGG----ATTTTGTGTG-------------TCTTCTGGATTGCTAGCGCCTAGCGAT
CGGGAGTATGTATATGTATGTAC-GTAGGTGAACAACGCGGGGCAGCTGCTGGTGAAGCCCACCGCGGAGTGCACCGCGG
AGGAGTACTCCAAGGTGATGGCTACCAACCTGGAGTCGAGCTTCCATCTCAGCCAGCTCGCGCGCCCTCTTCTCGTGCGC
GCC---------GGAGGAGGCAGCATCATTAACATGTCCTCCATTGGAGGCTCCATCGGCTTCGTTGGCTCCACCGTCTA
TGCTATCACAAAAGGTACGTGCTCACTCCATT-------TCAAGATAAATCTCAT----ATTAGTTTCAGTTTAAGTCAA
ATTTTGTGAAACTAGATCAGCTTCAAGTTTAAAAATGTTATTACATCATG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TATGTAGGTGCAATGAACCAACTGACGAGGAGTTTGGCCACCGAGTGGGCCCCTGACAAGA
TCCGTGTGAACGGTGTCGCCCCAGGATTTATCACAACCGATATGATTAAAGACGTA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr4A_1098
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------CGGCAGCAAAGGGATAGGGTACGCCATCGTGGAGGAGCTCGCCGGGTTCGGTGCGAGGGTGCATGCCTGC
TCCCGGAACGCGGCGGAGCTGGAGGAGTGCCGACGGCGGTGGGAGGAGAAGGGCCTGCATGTCACCGCCTCCGCCTGCGA
CGTCTCTGTGCGCGCCGACAGGGAGAGGCTCATGGACACCGTCCGGCAGACCTTCGACGGCAAGCTCGACATACTAGTGA
GTTCTATATGTGTCTGTAAACTGCGG----ATTTTGTGTG-------------TCTTCTGGATTGCTAGCGCCTAGCGAT
CGGGAGTATGTATATGTATGTAC-GTAGGTGAACAACGCGGGGCAGCTGCTGGTGAAGCCCACCGCGGAGTGCACCGTGG
AGGAGTACTCCAAGGTGATGGCTACCAACCTGGAGTCGAGCTTCCATCTCAGCCAGCTCGCGCGCCCTCTTCTTGTGCGC
GCC---------GGAGGAGGCAGCATCATTAACATGTCCTCCATTGGAGGCTCCATCGGCTTCGTTGGCTCCACCGTCTA
TGCTATCACAAAAGGTACGTGCTCACTCCATT-------TCAAGATAAATCTCAT----ATTAGTTTCAGTTTAAGTCAA
ATTTTGTGAAACTAGATCAGCTTCAAGTTTAAAAATGTCATTACATCATG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TATGTAGGTGCAATGAACCAACTGACGAGGAGTTTGGCCACCGAGTGGGCCCCTGACAAGA
TCCGTGTGAACGGTGTCGCCCCAGGATTTATCACAACCGATATGATTAAAGACGTA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr4A_1120
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------GCCATCGTGGAGGAGCTCGCTGGGTTTGGGGCGAGGGTGCACACCTGC
TCCCGGAACGCGGCGGAGCTGGAGGAGTGCCGCCGGCTGTGGGAGGAGAAGAACCTGCGGGTCACCGTCTCTGTCTGTGA
TGTCTTGGTGCGCGCCCAGAGGGAGAAGCTTATGGAGACGGTCCGACAAACTTTCGACGGCAAGCTCGACATACTAGTAA
GTTGTGCTAACACCCAATACTCAGCTCTGATTGAGCATCAACCAAGTGAAGGATTTTATCAAGTGCTAGCTC--------
--------TGTATATGTA---AT-GCAGGTGAACAATGCAGGGCAATTTTGGTTCAAGCCCGCTGATGAATGTACGGCGG
AGGACTTCTCCAATCTGATGACCACCAACTTGGAGGCGAGCTTCCATCTAAGTCAACTTGCACGCCCTCTTCTCATACAC
GCTTCTATTGCTGGAGGAGGTAGCATCATCAACATGTCCTCCATTGGAGGCTCAATTGCCTTCGTAGGCTCCACAATTTA
TGCGATCACAAAAGGT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S--S--------SSSSSSSSS
-S----S-S---S-S----------S----SSSSSSS---------------------SS-SS------------S---S
-----------------S---S---S-SSSSSSSSSSSSSSS---------------S-----S---------------S
-------------S----------SS---------S--S--S---------------------S-S--------------
--------S-------------------------------S--------------S------------S----------S
---S---S-SSS--------------------------------------------------S-S-S----------SS-
--------------------------------------------------------------------------------
---------------------------------S-----------------------S----------------------
--------------------------------------------------------------S---S-----S-------
------------------------------S--------------------S----------------------S-----
--S----S--------------S--S------------------------------------------------------
------------------------S----------------------------S--------------------------
-------------------------S--------SS---S----------------------------------------
-------------------------S-------------------------------------------S------S---
--S--------------------------------------------------------------S--------------
-S-----------------------------------------------------------------------S------
-----------------------------------------------------------S--S-----------------
----------------S-S-----S-------------------------------------------------------
---------------------------------S--------------SSSS---S-----------S------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------------S--S--SS-S-SS
SSSSSSSSSSS-----------------------S--S---S------------------------SS---S--------
---------------------------------------------------------------S----------S-----
------------------------S-----S--------------S----------------------------------
-----------SS-------------------------------------------------------------------
----------------------------------------------------------S---------------------
---------------------------------------------S-----S----------------------------
-------------------S-----------------------------S-------------S----------------
--------------S----S-----------------------S------------------------------------
--------------------------------------------------------------------------------
-----------------------------S---------------S---------------------S-----------S
---------------------------------------------------------------------------S----
-SS------------------S--------------------SS----------------------SSSSSSSSSSSSSS
----------------------------------------S---------------------------------------
------------------------------S----------------S--------------------------------
--------S----------------------------------------------------------SSSSSSSSSSSSS
S----------------SS----------------------------------------S----S-------SS-S-S-S
SSS---------------------------------------------------S-------------------------
-------------------------------------------S--------------------S---------------
----------------------------------------------------------S----------S----------
-----S----S--------------------------------------S------------------------------
----S-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_77
---------------------------------------------------------GAGAGGAGATAATGGCGGGC---
--------------------------------------------------------------------------------
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----------------------------------
>reverse_1320
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AGTCCGGCAGACCTTCAAC----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_125
--------------------------------------------------------------------------------
-------------------------CGTATTCCACCTGACCCCAC-----------------------------------
--------------------------------------------------------------------------------
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----------------------------------
>reverse_1522
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-CGAGTACTCCAAGGTGATGGC----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_127
--------------------------------------------------------------------------------
---------------------------TATTCCACCTGACCCCACCA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_2111
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTGTCATGCATGGTTGTCCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_1443
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TGCTAGGGCCTAGTGAT
CGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_3112
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTGGGCTTG
ACATGAGCACT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
