>input_sequence_45236
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------------------------------------------------------------------------CCCCCACC
GTCTCTCTCCCTCTCTC---------------------------------------------------------------
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------------------------------------------------------------------------------TC
TC--TCCTCCGCGCCGCTTTCTAGGGTTTTTTCCCTCGCCCCG-CCCGCGCACGCACGCACGCACCCGC----AGAGGAG
CC-AGGCCGCCGCAGGGTCTCCGCCTAGAGGAGGATGGGATACGACGGCGCCCCCTCGCCCGCATCGGCCGCTGCGCGCG
ACGCCAAGAAGAAGAGGGTAAGTAAGGGCCCCGTGTGTGTGGTGTGATCTGCGATTCGATTTGGGGGGCGGGGCGTCCCC
TGGTCCGGTTGCGGATTGCGCGGCGTTCTGATCCGATCTGCCGATTTTTCGTGCCCCGCAGGGTAACCGCTCGTCGGCCA
AGCTGAAGCAGTGCAAGCTCGACGCGCGCCGGGAGCAGTGGCTGTCGCAAGGTCTGATCTCGTGCCTGCTCATGTATTCT
TTTATGTATTCTTGGTCTTTTCCCCTCGCCAATCCCGGAAGTTGGGATCTCTGCACTGTGTATCCTAGTTGCG--TCTCG
TCTTTGGGTGCCTGTGGGGGAGTTGGGATACTTAGGGGAATCTGATTATTTCGGCACAGGGGTGATCTAGGTGCTACAAA
TTGATAACTTTTATTCAAGATGATATTTTGGGTTCAAATTCTGATCTGTTTGCGTTTTGGATTGGTCTAGTCAAGGATGG
GAAGGAGGCCACGGCCAAGCCTTTGCCAGCGGGCGCAGGATCAGGGGCAGGGTCGAATGCTGGGTCGCCAATCCTTGCTT
CGCCACACCCTCCACTCCCCCGGCGGCGCGCCGATGCAAGGTCAAGGGGTGGAGTTCTGGAGGATGACAAGGAGGATGCT
GGAGCTACCGGGCAAGAAGTAGGCGGCAGCGACCTTGACTCCCCTATGCACAGCCCTTGTTCAGACAACTCTCGAGGTGG
AGGCTGTGCTCAGAGTAAGCGCTGCTCCAGCAATGGAGGTGGCCCCAGCCTCAGCAGTGTGAGCAGTCTATGGTCCAGTT
CCAGGAGTGTGAGTGATGCTGAGGATGATGACACGGGCAGTGGCCCTGAGGAGGAAAACGGGGTGCTGGATGATTGGGAA
GCTGTTGCTGATGCACTTTCAGTCGATGATAACAGTCATTGCCACCAGAGTTTAGGTACCACGATGCCCCCAGCAGCTAC
AAGTGAGTCGGCACCTCTGGCAAATACATCAAAAAGAACAGAGCCTATTCGAAGCAATGCAAGAGCTTGGACACCAGATG
ATACGTTCCGTCCACAGAGCTTACCCAGTATCTCCAAGCAGTCGAGCTTCCCAGCGAGGATTGGCAACTGCTGGGGGATG
GGTATGAGTGCAGCACATCAGAGTATCCTCTCTATGCCATTATCTTGCCCGATATGCTACGAGGATCTTGACCCAACAGA
CTCGAGCTTCCTCCCCTGCCCTTGCGGGTTCCATCTGTGTCTCTTCTGCCACAAGAGGATCCTCGAGGCAGATGCACGTT
GCCCAGGGTGCAGGAAGCTATACAATGCAGGGTCTGCAGGAGA---AGGAGCGCCAGCACCAGTGCGTCTATCCCGTTCT
TGTAGCATGGGTCCAAGACACTAGGCTGTCTGAAGGCTATGATAGCTCTATGCCGTAGTTCTGCTTTGCATGTTACTGTC
GGATATGCTGGTTTTGTTGCGTATTGTCTGCTTTTGGTATAAAGAAATGTGAATATTTGAATAGATGCTGTGCCCATAT-
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>chr2D_1_TraesCS2D01G326600
GAAGATCGTAGCAGCAGCGCAGTGCTCGGGAACTTTGTGGCGGGAGGAAGAGGATCTTCT-GGTGCGTCTCTCTGAGAGG
AGCGACCTCTCTTTTATAGGCGCAAGAGAAGGAGGCGAGAGGCTGCGCCGGGAGCTGAAGGGAACGAGGGAGACGAAACG
AACAGGCATCAGGCGAAGAGGTGCGCCGTTCGTATTCAATCTCCACTACAACAAA-A-CGTTT-CAGCTTCCGCGTGACC
TTTCATATACCCGTCGTGCGTGGCAAAAATTTAGACATCGGCTCGGCTCATTCCCGCACCCCGTGGCAC-----------
GCGAGGCGGGCGGCGGAGGAGGAGCGCGCGTGGATGTCTCTCTTATTCTCATCCTCATGCATGTGGAGAAAGAGTCTCCC
TT----AGAGGTCCAACTCCCTCTAAACTAGCAATATGAGACTAAACTTTAGTTCCACGTCTTGCTTTGCACGAATGGGC
TGCGTGGG-CCTCTAGGATTTATTAGGAATTTTTGAAACTGCTATTGGGCTAGGTCCAAAATAGACAAAAT-TCCAGCAG
TATTCACTCTTAACACCTTTCTATCAATGAAATAATTCGCAAGCTTTGCATGGTCATAAAAAA---AGCCAAAAATTAAT
G--------AACTA-ATAAAAAAGACAAAATTAGTGCCGTTTACAA-GAGGCCCGTTGCACTCAACGGAATCAACCTGCT
CGTGCGCCGACCCCAGC--CCCCAAACCGTCCTTCTCATCCCATCCCGAGGGCCGGGCGGAGGGCAGTCTGGTCATTACG
CGGGGGCGCCCTGCCCCCCGTT----------------------------------------------------------
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-------------TCCCTCCCTCCCTCGCCACCTGTGGCCCGTCCGGCCAGGATTAATTAAAGCGAAGGGGAAGAAACGC
-AAACGCCAAAAGCCCCGGAAAGA--TTTTGCCTTTGCTTTCTTCCCAATAACCTCCGCCCTCC-CTAGCCTCGCCCCGC
CCCGTGTGTTATCTATCCCCGTCCTGCACATCCACCCATCCCGCCGCCCTGCGCTCCCTCGTCT-CCCCCACCCCCCACC
GTCTCTCTCCCTCTCTC---------------------------------------------------------------
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TC--TCCTCCGCGCCGCTTTCTAGGGTTTTTTCCCTCGCCCCG-CCCGCGCACGCACGCACGCACCCGC----AGAGGAG
CC-AGGCCGCCGCAGGGTCTCCGCCTAGAGGAGGATGGGATACGACGGCGCCCCCTCGCCCGCATCGGCCGCTGCGCGCG
ACGCCAAGAAGAAGAGGGTAAGTAAGGGCCCCGTGTGTGTGGTGTGATCTGCGATTCGATTTGGGGGGCGGGGCGTCCCC
TGGTCCGGTTGCGGATTGCGCGGCGTTCTGATCCGATCTGCCGATTTTTCGTGCCCCGCAGGGTAACCGCTCGTCGGCCA
AGCTGAAGCAGTGCAAGCTCGACGCGCGCCGGGAGCAGTGGCTGTCGCAAGGTCTGATCTCGTGCCTGCTCATGTATTCT
TTTATGTATTCTTGGTCTTTTCCCCTCGCCAATCCCGGAAGTTGGGATCTCTGCACTGTGTATCCTAGTTGCG--TCTCG
TCTTTGGGTGCCTGTGGGGGAGTTGGGATACTTAGGGGAATCTGATTATTTCGGCACAGGGGTGATCTAGGTGCTACAAA
TTGATAACTTTTATTCAAGATGATATTTTGGGTTCAAATTCTGATCTGTTTGCGTTTTGGATTGGTCTAGTCAAGGATGG
GAAGGAGGCCACGGCCAAGCCTTTGCCAGCGGGCGCAGGATCAGGGGCAGGGTCGAATGCTGGGTCGCCAATCCTTGCTT
CGCCACACCCTCCACTCCCCCGGCGGCGCGCCGATGCAAGGTCAAGGGGTGGAGTTCTGGAGGATGACAAGGAGGATGCT
GGAGCTACCGGGCAAGAAGTAGGCGGCAGCGACCTTGACTCCCCTATGCACAGCCCTTGTTCAGACAACTCTCGAGGTGG
AGGCTGTGCTCAGAGTAAGCGCTGCTCCAGCAATGGAGGTGGCCCCAGCCTCAGCAGTGTGAGCAGTCTATGGTCCAGTT
CCAGGAGTGTGAGTGATGCTGAGGATGATGACACGGGCAGTGGCCCTGAGGAGGAAAACGGGGTGCTGGATGATTGGGAA
GCTGTTGCTGATGCACTTTCAGTCGATGATAACAGTCATTGCCACCAGAGTTTAGGTACCACGATGCCCCCAGCAGCTAC
AAGTGAGTCGGCACCTCTGGCAAATACATCAAAAAGAACAGAGCCTATTCGAAGCAATGCAAGAGCTTGGACACCAGATG
ATACGTTCCGTCCACAGAGCTTACCCAGTATCTCCAAGCAGTCGAGCTTCCCAGCGAGGATTGGCAACTGCTGGGGGATG
GGTATGAGTGCAGCACATCAGAGTATCCTCTCTATGCCATTATCTTGCCCGATATGCTACGAGGATCTTGACCCAACAGA
CTCGAGCTTCCTCCCCTGCCCTTGCGGGTTCCATCTGTGTCTCTTCTGCCACAAGAGGATCCTCGAGGCAGATGCACGTT
GCCCAGGGTGCAGGAAGCTATACAATGCAGGGTCTGCAGGAGA---AGGAGCGCCAGCACCAGTGCGTCTATCCCGTTCT
TGTAGCATGGGTCCAAGACACTAGGCTGTCTGAAGGCTATGATAGCTCTATGCCGTAGTTCTGCTTTGCATGTTACTGTC
GGATATGCTGGTTTTGTTGCGTATTGTCTGCTTTTGGTATAAAGAAATGTGAATATTTGAATAGATGCTGTGCCCATATA
GAGTCTCCAGGACCTTGGTATCCTTTTTGTACTGATGCATTGGGTGTGATGCATATGTTGCTGGAGATTGGAGAGGACCT
TTTGTTGTTACAGTTCGTGAGTTCATATATAATAGCTATGGTGACTGTTATTTCCTTGCCACTAGTACACTGTTATCAGT
T--GAATCATGTTCACCTAAGTCTAGTTCTTGCTCTT-----TTTTTCACTTATGTGATGATCTTGAGACTTTCTACTAC
CAAGGCAAGTGGACATTCTCCTGTATTAAAACGATTGTCTAATCTTTATAGTCTACTTTACATAAATGCTGATG-TTTGG
TCTTCACTGACAAAATGCAATGTTACTCAACTCAAGTAAACTCCTACCTTTTATCATTATCAGTATTTGTTTTATATATC
TTTACCGTATTATCATTTCAGGC-----TCATCAAATAGTCTGTGTGGGTGGGCTTTCCTATGATTCTGATCTTGGCAAG
GAAAATATTTCGCTATTGTAGTACAAC--TGTGTGTGGTGTGTTGTCTTTCTCTCTAATTTCTTTATTTT-GGTTTAAGC
TTCATAATGTGTTTTGACTCAGCCTGGCAGCTTTAAGATGCAAATGTGAACTGTGATTTAGTAAAGAAACTCCTTGGACT
ATCTATACGATGTACTTGTTTTAAATTTCTATAAGCTAGTGTTTCTTCGTATGATACCTGTTTTGCAT-CTATATATATG
TCAGTTTCTTGCGTTCGATCTTATTATACTCCCTCCATTTCTTCGTACTT--------------------------AACT
TTCTGAAGTTTGATCAAGTCAATAGAAAAAAAAATCAACATTCACAATACCATATAAATATCATTAGATCCATTATGGAA
TATATTTTCATATTGTATTTATTTGGTATTGTAGATGTTGCTAA-----TTGTAAATTTTGTCAAACTTTATAGAGTTTG
ACTGAAAGACAAAAATCTAATATGTGAAGT-AAAAAGAAACGTAGGGAGTACTACACATTGTGCTATTACTCATGTTTTG
ACCTATCT
>chr2A_1
GAAGATCGTAGCAGCAACGCAGTTCTTAGGAACTTTGTGGCGAGAGGAAGAGGATCTTCT-GGTGCATATCTCTGAGAGG
AGCGACTTCCCTTTTATAGGCGCAAGAGAAGGAGGCGAGAGGTTGCGCCGGGAGCTGAAGGGAACGAGGGAGACGAAATG
AACAGGCATCAGGCGAGGAGGTGCGTCGTTCGTATTCAATCTCCACTACAGCAA-AA-CGCTT-CAGCTTCCGTGTGACC
TTTCGTATACCCATCGTGCGTGACAAAAATTTAGACATCGGCTCAGCTCATTCCCGCAACCCGCGTCACGTCGC-----G
GCGAGGCGGGTGGCGGAGGAGGAGCGTGCATGGATGTCTCTCTTGTTCTCATCCTCATACATGTGGAGGAAGAGCCTCCC
TTATAAAGAGGTCCAACTCCCTCTAAACTAGCAATGTGGGACTAAACTTTAGTTCCACCTCTTGCCTTGCATGAATGGGT
TGCGTGGG-CCTTTAGGATTTATTAGGAATTTCTGAAACTTCTATTGGGCTAGGCCCAAAATAGACAAAAT-TCCAGCA-
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>chr1D_1
GAAGATCGTAGCAGCAGCGCAGTGCTCAGGAACTTTGTGGC--GAGGGGAAGGATCTTCTGGGTGCGTCTCTCTGAGAGG
AGCGACCTCCCTTTTATAGGCGCAAGAGAAGGAGGCGAGAGGCTACGCCGGGAGCTGAAGAGAATGAGGGAGACGAAACG
AACAGGCAGCAGGCGAAGAGGTGCGCCGTTCGTATTCAATCTCCACTACAGCAAAAA-CGTTT-CAGCTTCCGCGTGACC
TTTCGTATACCCGTCGTGCGTGGCAAAAATTTAGACATCGGCTCGGCTCATTCCCGCAACCCGCGG-----CGCATCGTG
ACGAGGCGGGCGGCGGAGGAGGAGCGCGCGTGGATGTCCCTCTTGTTCTCATCCTCATACATGTGGAGAAAGTGCCTCCC
TTATAAAGAGGTCCAACTCCCTCTAAACTAGCATTGTGGGACTAAACTTTAGTTCCACCTCTTGCCTTGCACGAATGGGC
TGCGTGGG-CCTCTAGGATTTATTAGGAATTTCTGAAACTGCTATTGGGCTAGGCCCAAAATTGACAAAAT-TCCAGCA-
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>chr1D_1
GAAGATCGTAGCAGCAGCGCAGTGCTCAGGAACTTTGTGGC--GAGAGGAAGGATCTTCT-GGTGCGTCTCTCTGAGAGG
AGCGACCTCCCTTTTATAGGCGCAAGAGAAGGAGGCGAGAGGCTGCGCCGGGAGCTGAAGAGAATGAGGGAGACGAAACG
AACAGGCAGCAGGCGAAGAGGTGCGCCGTTCGTATTCAATCCCCACTACAGCAA-AAATGTTT-CAGCTTGTGCGTGACA
TTTCGTATACCCGTCGTGCGTGGCAAAAATGTAGACATCGGCTCGGCTCATTCCCGCAACCCGCGG-----CG-------
---AGGCGGGCGACGGAGGAGGAGCGCGCGTGGATGTCCCTCTTGTTCTCATCCTCATACATGTGGAGAAAGAGCCTCCC
TTATGAAGAGGTCCAACTCCCTCTAAACTAGCAATGTGGGACTAAACTTTAGTTCCACCTCTTGCCTTGCACGAATGGGC
TGCGTGGG-CCTCTAGGATTTATTAGGAATTTCTGAAACTGCTATTGGT-TAGGCCCAAAATAGACAATAT-TCCAGCA-
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>chr1D_1
GAAGAACGTAGCAGCAGCGCAGTGCTCAGGAACTT-GTGGCGAGAGGAAGAAGAGGTTGT-GTTGCGTCTCTCTGAGAGG
AGCGACCTCCCTTTTATAGGCGCAAGAGAAGGAGGCGAGAGGCTGCGCTGAGAGCTGAAGAGAACGAGGGAGACGAAACG
AACAGGCAGCAGGTGAAGAGGTGCGCCGTTCGTATTCAATCTCCACTACAGCAA-AA-CGTTT-CAGCTTCTGCGTGACC
TTTCGTATACCCGTTGTGCGTGGCAAAAATTTAGACATCGGCTCGGCTCATTCCCGCAACCCGCGG-----CGC------
----GGCGGGCGGCGGAGGAGGAGCGCGCGCGGATGTTCCTCTTGTTCTCATCCTCATACATGTGGAGAAAGAGCCTCCC
TTATAAAGAGATCCAACTCCCTCTAAGCTAGCAATGTGGGACTAAACTTTAGTTCCACCTCTTGCCTTGCACGAATGGGC
TGCGTGGA-CCTCTAGGATTTATTAGGAATTTCTGAAACTGCTATTGGGCTTGGCCCAAAATAGAAAAAAAATCCAGCA-
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>chr5D_1
GAAGATCGTAGCAGCAGCGCAGTGCTCAGGAACTTTGTGGCGAGAGTAAGAGGATCTTCT-GGTGCGTCTCTCTGAGAGG
AGCGACCTCCCTTTTATAGGCGCAAGAGAAGGAGGCGAGAGGCTGCGCCGGGAGCTGAAGGCAACGAGGGAGACGAAACG
AACAGGTAGCAAGCGAAGAGGTGCGCCCTTCGTATTCAATCTCCACTACAGCAA-AAACGTTTTCAGCTCCCGTGTGACC
TTTCGTATACCCGTCGTGCGTGGCAAAAATGTAGACATCGGCTCGGCTTGTTCCCGCAACCCGCGG-----CGC-----G
GCGC----GGCGGCGGAGGAGGAGCGCGCGTGGATGTCCCTCTTGTTCTCATCCTCATACATGTGGGGAAAGAGCCTCCC
TTATAAAGAGGTCCAACTCCCTCTAAACTAGCAATGTGGGACTAAACTTTAGTTCCACCTCTTGCCTTGCATGAATGGGC
TGCGTGGG-CCTCTAGGATTTATTAGGAATTTCTGAAACTACTATTGGGCTAGGCCTAAAATAGACAAAAT-TCCAGCA-
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>chr7D_1
GAAGAACGTAGCAGCAGCGCAGTGCTCAGGAACTT-GTGGCGAGAGGAAGAAGAAGTTCT-GGTGCGTCTCTCTGAGAGG
AGCGACCTCCCTTTTATAGGCACAAGAGAAGGAGGCGAGAGGCTGTGCCGGGAGCTGAAGGGAATGAGGGAGACGAAATG
AACGGGCAGCATGCGGAGAGGTGCGCCGTTCGTATTCAATCTCCACTACAGCAA-AA-CGTTT-CAGCTTCCGCGTGACC
TTTCGTATACCCGTCGTGCGTGGCAAAAATTTAGACATCGGCTTGGCTCGTTCCCGCAACCCGCAG-----CGC-----G
CCGAGGCGAGCGGCGGAGGAGGAGCGTGCGTGGATGTCCCTCTTGTTCTCATCCTCATACATGTGGAGAAAGAGCCTTCC
TTATAAAGAGGTCCAACTCCCTCTAAACTAGCAATGTGGGACTAAACTTTAGTTCCACATCTTGCCTTGCACGAATGGGC
TGCGT-GG-CCTCTAGGATTTATTGGGAATTTCTGAAACTGCTATTGGGCTAGGCCCAAAATAGATAAAAT-TCCAGCAT
CTTCA---------------------------------------------------------------------------
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>chr6A_1
GAAGAACGTAGCAGCAGCGCAGTGCTCAGGAACTT-GTGGCGAGAGGAAGAAGAGGTTCT-GGTGTGTCTTTCTGAGAGG
AGCGACCTCCCTTTTATAGGCGCAAGAGAAGGAGGCGAGAGGCTGCGCCGGGAGCTGAAGAGAACGAGGGAGACGAAATG
AACAGGCAGCAGGCGAAGAGGTGCACCGTTCGTATTCAATCTCCACTACAGCAA-AAACGTTT-CAGCTTCCGTGTGACC
TTTCATATACCCGTCATGCGTGGCAAAAATTTAGATATCGGCTCGGCTCATTCCCGCAACCCGCGG-----TGT-----G
GCGAGGCGGGCGGCGGAGGAGGAGCGCGCGTGAATGTCCCTCTTGTTCTCATCCTCATACATGTGGATAAAGAGCCTCCC
TTATAAAGAGGTCCAACTCCCTCTAAACTAGCAATGTGGGACTAAACTTTAGTTCCACCTCTTGCCTTGCACGAATGGAC
TGCGT-GGGCCTCTAGGGT---TTAGGAATTTCTGAAACTGCTATTGGGCTAGGCCCAAAATAAACAAAAT-TCCAGCA-
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>chr3D_1
GAAGAATGTAGCAGCAACACAGTGCTCAGGAACTT-GTGGCGAGAGGAAGAAGAGGTACT-GGTGCGTCTCTTTGAGAGG
AGCGACCTCCCTTTTATAGGCGCAAGAGAAGGAGGCGAGAGGCTGCGCCGGGAGCTGAAGAGAACGAGGGAGATGAAACG
AACAGGCAGCAGGCGAAGAGGTGCGCCGTTCGTATTCAATCTCCACTACAGCGA-AAATGTTT-CAGCTTTCGCGTGACC
TTTCGTATACCCGTCGTGCGTGG-AAAAAATTAGACACCAGCTCGGCTCATTCCCGCAACCCGTGGCGCGTCGT-----G
GCGAGGCGGGCGGCGGAGGAGGAGCGCACGTGGATGTCCCTCTTGTTCTCATCCTCATACATGTGGAGAAAGAGCCTCCC
TTATAAAGAGGTCCAACTCCCTCTAAACTAGCAATGTGGGACTAAACTTTAGTTCCACCTCTTGCCTTGCACGAATGGGC
TGCTTGGG-CCTCTAGGATTTATTAGGAATTTCTGAAACTGCTATTGGGCTAGGCCCAAAATAGACAAAAT-TCCAGCAG
ATT-----------------------------------------------------------------------------
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>chr4D_1
GAAGAACGTAGCAGCAGCGCAGTGCTCAGGAACTT-GTGGCGAGAGGAAGAAGAGGTTCT-GGTGCGTCTCTCTGAGAGG
AGCGACCTCCCTTTTATAGGCGCAAGAGAAGGAGGCGAGAGGCTGCGCCGGGAGCTGAAGGGAACGCGGGAGACGAAACG
AACAGGCAGCAGCCGAAG-GGTGCAGCGTTCGTATTCAATCTCCACTACAGCAA-AAACGTTT-CAGCTTTCGCGTGACC
TTTCGTATACCCGTCATGCGTGGCAAAAATTTAGACATCGGCTCGGCTCATTCACGCAACCCGCGGCGCGTCGT-----G
ACAAGGCGGGCGGCGGAGGAGGAGCGCACATGGATGTCCCTCTTGTTCTCATCCTCATACATGTGGAGAAAGAGCCTCCC
TTATAAAAAGGTCCAACTCCCTCTAAACTAGCAATGTGGGACTAAACTTTAGTTCTACCTCTTGCCTTGCACGAATGGGC
TGCGT-GG-CCTCTAGAATTTATTAGGAATTTCTGAAACTGCTATTGGGCTAGGCCCAAAATAGACAAAAT-TCCAGCA-
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>chr2B_539
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-------------------------------------------------------------------------------G
TATTCACTCTTAACACTTTTCTATCAATGAAATAATACCCCAGCTTTGCATGGTCATGAAAAAGAAAGACAAAAATTAAT
TAGTCAATCAACTA-ATAAAAAAGACAAAAATAGTCCCGTTTACAA-GAGGCCCGTTGCACTCAACGGAATCAACCTGCT
CGTGCGCCGACC---CCAGCCCCAAACCGTCCTTCTCATCCCATCCCGAGGGCCGGGCGGAGGGCAGTCTGGTCATTACG
CCGGGGCGCCCTGCCCCCCGTT----------------------------------------------------------
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-------------TCCCTCCCTCCATCGCCACCTGTGCCCCGTCCGGCCAGGATTAATTAAAGCGAAGGGGAAGAAACGC
-AAACGCCAAAAGCCCCGGAAAGA--TTTTGCCTTTGCTTTCTTCCCAATAACCTCCGCCCTCGTCTCGCCTCGCCTCGC
CCCGTGTGTTATCTATCCCCGTCCTGCACATCCACCCATCACGCCGCCCTGCGCTCCCTCGTCTCCCCCCACCCCCCACC
GTCTCTCTCCCTCTCTC---------------------------------------------------------------
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------------------------------------------------------------------------------TC
TCTCTCCTCCGCGCCGCTTTCTAGGGTTTTTTCCCTCGCCCCGTCCCGCGCACGCACGCACGC-------CGCAGAGGAG
GCAAGCCTGCCGCAGGGTCTCCGCCTAGAGGAGGATGGGATACGACGGCGCCCCCTCGCCCGCATCGGCCGCGGCGCGCG
ACGCCAAGAAGAAGAGGGTAAGTGAGGGGCCCGTGTGTGTGGTGTGATCCGCGATTCGATTTGGGGGCCGGGGCGTCCCC
GGGCTCGGTTGCGGATTGCGCGGCGTTCTGATCCGATCTGTTGATTTTTCGTGTCCCGCAGGGTAACCGCTCGTCGGCCA
AGCTGAAGCAGTGCAAGCTCGACGCGCGCCGCGAGCAGTGGCTGTCGCAAGGTCTGATCTCGTGCCTGCTCATGTATTCT
TTTATGTATTCTTGGTCTTTTCCCTT-GCCAATCCCGGAAGTTGGGATCTCTGCACTGTGTATCCTAGTTGCGTCTCTCG
TCTTTGGGTGCCTGTGGGGGAGTTGGGATACTTAGGGGAATCTGATTATTTCGGCACAGGGGTGATCTAGGTGCTACAAA
TTGATAACTTTTATTCAAGATGATATTTTGGGTTCAAATTCTGATCTTTTTGCGTTTTGGATTGGTCTAGTCAAGGATGG
GAAGGAGGCCACGGCCAAGCCTTTGCCAGCGGGCGCAGGATCAGGGGCAGGGTCGAATGCTGGGTCGCCAATCCTTGCGT
CGCCACACCCTCCACTGCCCCGGCGGCGAGCCGATGCAAGGTCAAGGGGTGGGGCTCTGGAGGACGACAAGGAGGATGCT
GGCGCTACCGGGCAAGAAGTAGGCGGCAGCGACCTTGACTCCCCTATGCACAGCCCTTGTTCAGACAACTCTCGAGGTGG
CGGCTGTGCACAGAGTAAGCGCTGCTCAAGCAATGGTGGTGGCCCCAGCCTCAGCAGCGTGAGCAGTCTATGGTCCAGTT
CCAGGAGTGTGAGTGATGCTGAGGATGATGACACGGGCAGTGGCCCTGAGGAGGAAAACGGGGTGCTGGATGATTGGGAA
GCTGTTGCTGATGCACTTTCAGTCGATGATAACAGTCATTGCCACCAGAGTTTAGGTACCACGATGCCCCCAGCAGCTAC
AAGTGAGTCGGCACCTCTGGCAAATACATCAAAAAGAACAGAGCCTATTCGTAGCAATGCAAGAGCTTGGACACCAGATG
ATACGTTCCGTCCACAGAGCTTGCCCAGTATCTCCAAGCAGTCGAGCTTCCCAGCGAGGATCGGCAACTGCTGGGGGATG
GGTATGAGTGCAGCACATCAGAGTATCCTCTCTATGCCATTATCTTGCCCGATATGCTACGAGGATCTTGACCCAACAGA
CTCAAGCTTCCTCCCCTGCCCTTGCGGGTTCCATCTGTGTCTCTTCTGCCACAAGAGGATCCTCGAGGCGGATGCGCGTT
GCCCAGGGTGCAGGAAGCTGTACAATGCAGGGTCTGCAGGAGAAGGAGGAGCGCCAGCACCAGTGCGTCTATCCCGTTCT
TGTAGCATGGGTCCAAGACACTAGGCTGTGTGAAGGCTATGATAGCTCTATGCCGTAGTTCTGCTTTGCATGTTACTGTC
GGATATGCTGGTTTTGTTGCGTATTGTCTGCTTTTGGTATAAAGAAATGTGAATATTTGAATAGATGCTGTGCCCATATA
GAGTCTCCAGGACCTTGGTATCCTTTTTGTACTGATGCATTGGGTGTGATGCACATGTTGCTGGAGATTGGAGAGGACCT
TTTGTTGTTACAGTTCGTGAGATCATATATAATAGTTATGGTGACTGTTATTTCCTTGCCACTAGTACACTGTTATCAGT
T--G--TCATGTTCACCTAAGTCTAGTTCTTGCTCTT-----TT---CACTTATGTGATGGTCTTGGGACTTTCTTCTAC
TAAGGCAAGTGGACATTCTCTTGTATTAAAACGCTTGTCTAATCTTTATAGCCTACTTTACATAAATGCTGATTATTTGG
TCTTCACTGACAAAATGCAATGTTACCCAACTCAAGTAAACTCCTACATTTTATCATTATCAATATTTGTTCTATATATC
TTTACTGTATTATCATTTCAGGCTCTGGTCATCAAATAGTCTGTGTGGGTGGGCTTTCCTATGATTCTGATCTTGGCAAG
GAAAATATTTCGCTATTGTAGTACAAC--T--GTGTGGTGTGTTGTC--TCTCTCTAATTTCTTTATTTTTGGTTTAAAA
TTCATAATGTGTTTTGACTCAGCTTGGCAACTTTAAGATGCAAATGTGAACTGTGATTTAGTAAAGAAACTCCTTGGACT
GTCTATACAATGTACTTGTTTTAACTTTCTACAAGCTAGCGTTTCCTGGTATCATACCTGTTTTGCATCCTATATATATG
TTAGTTTCTTGCGATCGATCTTATTATAATCCCTTCATTTCTTCTTACTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>chr2A_610
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AATTAAT
C--------AACTATATAAAAAAGACAAAAACAGTCCCGTTTACAAAGAGGCCCGTTGCACTCAACGGAATCAACCTGCT
CGTGCGCCGCCCCAGCCAGCCCCCAACCATCCTTCTCATCCCGTCCCGAGGGC-----GGAGGGCAGTCTGGTCATTACG
CGGGGGCGCCCTGCCCCCCGTTTCCCTCCCTCTCAGGCTGCAAGTGGGATGAGACGCGGAAGTCCCACATAATGTCGCAT
CAACCCACATACTTATGTGGGATTAAGTGAGATGTCCACATAAAAATAATTGGAACTATGCGGGTTGCCACATACCCACA
TAATCTGAATGCAAAAATTGAAAATACAAAAAGTACATGTCAGGATAGAGCAAGTTCATACTGTTTACTCTCCATGTATT
AAGACTACAACCTGTCAGGATACAACAAGTACATAATCTAAATGCAAGATAAATTGCATTAATACAACCTACCATCCTTT
ATTTGCAGCAAGACTAAAGACAAAATCAATTGCAATAAGACTAGAGGCTACAGCAAGATGAATTTTTCCAGCTCTTCAAG
ATCTTCCATCACCATCAACCTGCCATCCTTTCTTCAAGTAGCAAACTAGCAACCCATATTTCCTGTCAAAAAATATGTCC
GTCAGTCCATTTGCATCATAAGAATCCATTTTACAGGATAACTTAGGACTTTACAAGAAACATTGGAAGTCAAACAAGTA
GCAAAGTAGAAACATTGGAAGTCAAACAAGAGCCATTGGGAAGGTGGACGGCGCCGCTAGATCAACCATTGGGAAGGTGG
ACGGCAGCGCTAAGCTGGCCATGGGGGAGGCGGTGGCGGCGGCGTGCCCTGCCCTAGTGGCGAAGAGGGGAACGAGGAAT
TAAGTAGGTCATAGTTGGAAAACGTGGGTCAGCCCACTTAGCCCACTTTCTAAATCGCGCCGTGGACGGTCCGTGTCCGC
TTGCAGCCTGACCTCCCTCCCTCCCTCGCCATGTGTGGCCCGTCCGGCCAGGATTAATTAAAGCGAAGGGGAAGAAACGC
AAAACGCCAAAAGCCCCGGAAAGATTTTTTGCCTTTGCTTTCTTCCCAATAACCTCCGCCCC-----CGCCTCGCCCCGC
CCCGTGTGTTATCTATCCCCGTCCTGCACATCCACCCATCCCGCCGCCCTGCGCTCCCTCGTCTCCC-CCACCCCCCACC
GTCTCTCTCTCCCTCTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTC
TCTCTCCTCCGCGCCGCTTTCTAGGGTTTTTTCCCTCG-CCCGTCCCGCGCACGCACGCCCGCACCCGCCCGCAGAGGAG
GC-AGCCGGCCGCAAGGTCTCCGCCTAGAGGAGGATGGGATACGACGGCGCCCCCTCGCCCGCATCGGCCGCGGCGCGCG
ACGCCAAGAAGAAGAGGGTAAGTAAGGGGGCCGTGTGTGTGGTGTGATCTGCGATTCGATTTGGGGGCCGTGGCGTCCCC
CGGCTCGGCTGCGGATTGCGCGGCGTTCTGATCCGATCTGCCGATTTTTCGTGTCCCGCAGGGTAACCGCTCGTCGGCCA
AGCTGAAGCAGTGCAAGCTCGACGCCCGCCGCGAGCAGTGGCTGTCGCAAGGTCTGATCTCGTGCCTGCTCATGTATTCT
TTTATGTATTCTTGGTCTTTTCCCTT-GCCAATCCCGGAAGTTGGGATCTCTGCACTGTGTATCCTAGTTGCGTCTCTCG
TCTTTGGGTGCCTATGGGGGAGTTTGGATACTTAGGGGAATCTGATTATTTCGGCACAGGGGTGATCTAGGTGCTACAAA
TTGATAGCTTTTATTCAACATGATATTTTGGGTTCAAATTCTGATCTTTTTGCGTTTTGGATTGGTCTAGTCAAGGATGG
GAAGGAGGCCACGGCCAAGCCTTTGCCAGCGGGCGCAGGATCAGGGGCAGGGTCGAATGCTGGGTCGCCAATCCTTGCTT
CGCCACACCCTCCACTCCCCAGGCGGCGTGCCGATGCAAGGTCAAGGGGTGGTGTTCTGGAGGATGACAAGGAGGATGCT
GGAGCTACCGGGCATGAAGTAGGCGGCAGCGACCTTGACTCCCCCATGCACAGCCCTTGTTCAGACAACTCTCGAGGTGG
AGGCTGTGCTCAGAGTAAGCGCTGCTCCAGCAATGGAGGTGGCCCCAGCCTCAGCAGTGTGAGCAGTCTATGGTCCAGTT
CCAGGAGCGTGAGTGATGCCGAGGATGATGACACGGGCAGTGGCCCTGAGGAGGAAAACGGGGTGCTGGATGATTGGGAA
GCTGTTGCTGATGCACTTTCAGTCGATGATAACAGTCATTGCCACCAGAGTTTAGGTACCACGATGCCCCCAGCAGCTAC
AAGTCAGTCGGCACCTCTGGCAAATACATCAAAAAGAACAGAGCCTATTCGTAGCAATGCAAGAGCTTGGACACCAGATG
ATACGTTCCGTCCACAGAGCTTGCCCAGTATCTCCAAGCAGTCGAGCTTCCCAGCGAGGATTGGCAACTGCTGGGGGATG
GGTATGAGTGCAGCACATCAGAGTATCCTCTCTATGCCATTATCTTGCCCGATATGCTACGAGGATCTTGACCCAACAGA
CTCGAGCTTCCTCCCCTGCCCTTGCGGGTTCCATCTGTGTCTCTTCTGCCACAAGAGGATCCTCGAGGCGGATGCGCGTT
GCCCAGGGTGCAGGAAGCTATACAATTCAGGGTCTGCAGGAGAA---GGAGCGCCAACACCAGTGCGTCTATCCCGTTCT
TGTAGCATGGGTCCAAGACACTAGGCTGTGTGAAGGCTATGATAGCTCTATGCCGTAGTTCTGCTTTGCATGTTACTGTC
GGATATGCTGTTTTTGGTCTGTATACA-----------ATAAAGAAATGTGAATATTTGAATAGATGCTGTGCCCATATA
GAGTCTCCAGGACCTTGGTATCCTTTTTGTACTGATGCATTGGGTGTGATGCATATGTTGCTGGAGATTGGAGAGGACCT
TTTGTTGTTACAGTTCGTGAGATCATATATAATAGCTATGGTGACTGTTATTTCCTTGCCACTAGTACACTGTTATCAGT
TGAG--TCATGTTCACCTAAGTCTAGTTCTTGCTCTTTTTTTTT---CACTTATGTGATGA--------------TCTAC
TAAGGCAAGTGGACATTCTCCTGTATTAAAACGCTTGTCTAATCTTTATAGTCTACTTTACATAAATGCTGATG-TTTGG
TCTTCACTGACAAAATTCCATGTTACTCAACTAAAGTAAACTCCTGCCTTTTATCATTATCAGTATTTGTTTTATATATC
TTCACCGTATTATCATTTCAGGCTCTGGTCATCAAATAGTCTGTGTGGGTGGGCTTTCCTATGATTCTGATCTTGGCAAG
GAAAATATTTCGCTATTGTAGTACAACTGT--GTGTGGTGTGTTGTC--TCTCTCTAATTTCTTTATTTT-GGTTTAAAC
TTCATAATGTGTTTTGACTCAGCCTGGCAACTTTAAGATGCAAATGTGAACTGTGATTTAGTAAAGAAACTCCTTGGACT
ATCTATACAATGTACTTGTTTTAGCCTCCTACAAGCTAGCGTTTCTTGGTATGATACCTGTTTTGCAT-CTATATATATG
TTAGTTTCTTGCGTTCGATCTTATTATACTCCCTCCATTTTTTCATACTTTGCATATTAGTTTTGTCTTAAGTCAAAACT
TTCTGAAGTTTGATCAAGTCAATAGAAAAAAAA-TCAACATTCACAATACCATATAAATATCATTAGATCCATTATGGAA
TATGTTTTCATATTGTATTTATTTGGTATTGTAGATGTTGCTATTTTTGTTGTAAATTTTGTCAAACTTCATAAAGTTTG
ACTGAAAGACAAAAGTCTAATATGTGAAGTAAAAAAGAAACGTAGGGAGCACTACAGGTTGTGCTATTACTCATGTTTTG
ACCTATCT
>SNPs
---------------------------S--------------S-------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------S-----------------------------
----------------------------------------------------------S---------------------
--------------------------------------------S-------------S---------------S-----
-----------------------------------S--S-------------------S------S--------------
--------------------------------S---------------------S-------------------------
----------------S-------------------S-S-S----------------S----------S-----------
S-----------------------------S----S--------------------------------------------
-------------SSS----------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S---S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S----S-S----------------------------------------------------------------S-------
----------------------------S--------------------------------------S------------
S--SS------------------------------------------------S--------------------------
-------------------------------S------------------------------------------------
------------------------S-S-----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
----------------------------S-----------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S-----S----
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
----SS--------------------------------------SSS-------------------S--------S----
S--------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------SS---------------SS-----------------------------S-
-----------------------------S--------------------------------------------------
--------S---------------S------S-------S-------S--------------------------------
-S------------------------------------------S-----------------------------------
---------------------------------S----------------------------------------------
---S---------------------------------------S-------------------------S---S------
--------------S----------------------------------S------SS----------------------
--------
>forward_365
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GCGCGTGGATGTCTCTCTTA-----------------------------------
--------------------------------------------------------------------------------
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--------
>reverse_2505
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTCGCCAATCCCGGAAGTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------
>forward_1748
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AATAACCTCCGCCCTCCCTA------------
--------------------------------------------------------------------------------
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--------
>reverse_3252
--------------------------------------------------------------------------------
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---------------------------------------------------AAGCAATGCAAGAGCTTGGAC--------
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--------
>forward_2853
--------------------------------------------------------------------------------
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---------------------------------ATGCAAGGTCAAGGGGTGGA---------------------------
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--------
>reverse_3996
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------ACTAC
CAAGGCAAGTGGACA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
