>input_sequence_45131
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---------------------------------------------------ATGTGCGGTGGCAGACGGCGCCGTCGCGG
CGGCTCTGACGCGACGGCAGGAGAGCCCGGCGGGTGGGGTTTCTGCGCGCCAGCGCTCGCCTTCCTGGCCCTGGCGGCCG
CTGCGGCGGTCGCGTTCCTGGAGGGCACCGCCGGCGGCGTCGCCTACGCCGGCGACGGGTGGTTCCACGAGTGCGCCAAG
TGGGACGCCGAGGGCGGGAGGTTCCTGGTGTCCACCTTCTTCGGCGCCGGCGTGGCCGAGGTGCGCGTCGGGGCGGGGGG
AGAAGAAGCCCTGGCGGAGCGGGTCGTGGTGGCGGACCCCGAGGTGACCGGGAGGGTGGCGCTGGGGCTCGCCGTGGACG
CGCCCAGGCAGCGGATCCTCGTGGCCTACGCCGACCGGCCTCCGAGCTTCGGGTACGCCGCCGTGGGCGCGTACGATCTT
CGCTCGGGGCGCCGCCTCTTCCTCGCCCGGCTCGACGGACCAGGTACACGTCTCCCCCTGTGATCGATGGCTTCTCCGCC
TCTCGTCCATATGAGAATGTTCCTGCTTTCTAGCCGTCCGATTAGGATCATCTTTTCTTTGCCAAAAGGAAAAAGTCGAA
AGCAAACCTTGAACTTGTAGATTAGAATGATCAGGTGG---------------GCCCTGCTCTGCCCCGTCGCCGTCAAG
AACCGTTGCGCATGGGATGCGGGACATACTCTACTTCCATTGGAGAATGAAGGATGAATGGGCAT------------CAT
TAATTATGTCCACCAATGATCCATGTCGATCCTGTGGTGGTTTCGCCTCTTGTCTCTGACAAGAAGACATAAAGCGAATT
TCTGGATAGCATCTTCTCTTTATTAGGTGTAGGACCCTGCTGTACGTATTAGGATGCTGCTATCACTCGATTACTCAATT
TGTTGGGAGCTTTACAGTTAGCATTCATCAACTCAAACAGTCCGCGATGCATAATCCACGCACTGCACTGGAACATGTTC
CCT---TTCAGATAAGATGTCGCCGGTTAAGCACCGAGCGGTAGAAAAACTTCGTAAAACATGACTACGGACAATATCCT
CGAGCGCACATATCCCCTAATAT---------------------------------------------------------
--------------------------------------AATTTTGCTTTCTTACATCATTGGATCAACCTCTGGCTAAAG
TAGCACCTAATAATTCTAATTGACTGATCTGTGTTTCATCTGCGTGCAGGCGAGTCCTCGTTCGCCGACGACGTGGCCTC
GGACGACGACGGCAACGCGTACGTGACCGACATCCTGGGCAACAGGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTCT
CAGTCATCAAGAGCGCCACCTTCAGGCAGCGGCCCGGGACGATGGACAACCTCATCGGCCTCAACGGCATCGTCTACCAC
CCCAACGGCTACCTCCTCGTCGTCCACACCTCTGGCGGCGACCTCTTCAAGGTGGACCCCAAGACGGGGGCCGTGAGCGT
CGTCAGGGTGCGGGGCACGCTCAAGAGCGGCGACGGTCTGGAGCTGATCTCGCCGACGAAGCTGGCCGTCGCCGGCATGC
CGAGCAGGCTGGTCGAGAGCTCCGACGACTGGGAGACCGCGAGCGTCACGGGACGGTATGTCGGGCCGGTGCACCGGATT
GGGTCGTCGGCGACGGTGAAGGACGGGGACGTGTACGTCAACCACATCGTGGGGTTCGGTCTCGGCAAGAAGAAGACGCA
CGTCCTCGCCAAGGCGGTGTTCGCGCCTCTGTAG----------------------------------------------
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>chr4A_1_TraesCS4A01G121100
TACTTGCGATGGAAGGGACATGGAAGGGAATGCCGCTCCGACGCCACCGCTACCACGAGCTGACCGTGCCATCACCTTCC
CACAGCCATCCTTGCAGTGTCCTCCTCGTGCGCCGTCGGAGCCGTGCCAACACACTGGACAGTAGCTGCCCCTCCTCCCC
CTGCGTCGCCGACCGCGTCGCCTCCATCTCCTTCATGCCGCTCCTCTCCACTCGCACCAAACATCGATGGGAACCGACTG
GATGCATGCACCATGCTCTGCCGCAGCACCGTCCGCACCAAACATATGAAGAAATGTCGCCAAAAACTGATCGGATCCAC
GTACCATGCTCTGCCGCTGCACCGCCCGCACCAAACATCTGAAGAAACATCGCCAAGAACTGACCAGGATCCGTGCAACG
CGCTTTGCCGCCGCACCACCTCGCCGGCAAATTGCCGAGCGGGGCTTGGATTGGACGCGGGAGGATAAGGGGGGTGACGA
TTGTCAGTGAGGGGGGCGAAGAAAAAACCGTTCATTCGATTTCCACTACCTATCAAACAACGTCGGAGCTGACGTGGAGC
TAAATTTGCGTCAAGATCTGTGCTGAAAATCCAACTGCTAGAGCCTTCTACGGGAAACCTTAAAAATCTGACGTTTGATT
TTTATCCATTTCGAAAATCTGACGCTCCCGACTTCGCCCGTTTTGCTTTTGTCACTACACGGGAACAAACACCGAACCAC
CACGCATTATGTGTCCTGTCTGCATCCCCATGACGCTTTCCGGCCAGGACCCCCAACCCCAGCTCATCCTAAACTTGTTG
CGCTG-CAGTAGTGACAGAACCCGGAAGATTTCGCCGCTGTGCCGCTCGCCAAACACCCACCAAAAACCCACCAAAAACG
TAGTTTCTATATTAGGACTT----GGAAACCCTTTGCTC-CCAAGTGATATCGGTCAAACGTGCGAACACGCAAACACGA
GAAGGAGAGCCTCCTCTCCGGATCTTGACGCCGCTTATC-----GTTCGCCATGTGCGGTGGCAGACGGCGCCGTCGCGG
CGGCTCTGACGCGACGGCAGGAGAGCCCGGCGGGTGGGGTTTCTGCGCGCCAGCGCTCGCCTTCCTGGCCCTGGCGGCCG
CTGCGGCGGTCGCGTTCCTGGAGGGCACCGCCGGCGGCGTCGCCTACGCCGGCGACGGGTGGTTCCACGAGTGCGCCAAG
TGGGACGCCGAGGGCGGGAGGTTCCTGGTGTCCACCTTCTTCGGCGCCGGCGTGGCCGAGGTGCGCGTCGGGGCGGGGGG
AGAAGAAGCCCTGGCGGAGCGGGTCGTGGTGGCGGACCCCGAGGTGACCGGGAGGGTGGCGCTGGGGCTCGCCGTGGACG
CGCCCAGGCAGCGGATCCTCGTGGCCTACGCCGACCGGCCTCCGAGCTTCGGGTACGCCGCCGTGGGCGCGTACGATCTT
CGCTCGGGGCGCCGCCTCTTCCTCGCCCGGCTCGACGGACCAGGTACACGTCTCCCCCTGTGATCGATGGCTTCTCCGCC
TCTCGTCCATATGAGAATGTTCCTGCTTTCTAGCCGTCCGATTAGGATCATCTTTTCTTTGCCAAAAGGAAAAAGTCGAA
AGCAAACCTTGAACTTGTAGATTAGAATGATCAGGTGG---------------GCCCTGCTCTGCCCCGTCGCCGTCAAG
AACCGTTGCGCATGGGATGCGGGACATACTCTACTTCCATTGGAGAATGAAGGATGAATGGGCAT------------CAT
TAATTATGTCCACCAATGATCCATGTCGATCCTGTGGTGGTTTCGCCTCTTGTCTCTGACAAGAAGACATAAAGCGAATT
TCTGGATAGCATCTTCTCTTTATTAGGTGTAGGACCCTGCTGTACGTATTAGGATGCTGCTATCACTCGATTACTCAATT
TGTTGGGAGCTTTACAGTTAGCATTCATCAACTCAAACAGTCCGCGATGCATAATCCACGCACTGCACTGGAACATGTTC
CCT---TTCAGATAAGATGTCGCCGGTTAAGCACCGAGCGGTAGAAAAACTTCGTAAAACATGACTACGGACAATATCCT
CGAGCGCACATATCCCCTAATAT---------------------------------------------------------
--------------------------------------AATTTTGCTTTCTTACATCATTGGATCAACCTCTGGCTAAAG
TAGCACCTAATAATTCTAATTGACTGATCTGTGTTTCATCTGCGTGCAGGCGAGTCCTCGTTCGCCGACGACGTGGCCTC
GGACGACGACGGCAACGCGTACGTGACCGACATCCTGGGCAACAGGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTCT
CAGTCATCAAGAGCGCCACCTTCAGGCAGCGGCCCGGGACGATGGACAACCTCATCGGCCTCAACGGCATCGTCTACCAC
CCCAACGGCTACCTCCTCGTCGTCCACACCTCTGGCGGCGACCTCTTCAAGGTGGACCCCAAGACGGGGGCCGTGAGCGT
CGTCAGGGTGCGGGGCACGCTCAAGAGCGGCGACGGTCTGGAGCTGATCTCGCCGACGAAGCTGGCCGTCGCCGGCATGC
CGAGCAGGCTGGTCGAGAGCTCCGACGACTGGGAGACCGCGAGCGTCACGGGACGGTATGTCGGGCCGGTGCACCGGATT
GGGTCGTCGGCGACGGTGAAGGACGGGGACGTGTACGTCAACCACATCGTGGGGTTCGGTCTCGGCAAGAAGAAGACGCA
CGTCCTCGCCAAGGCGGTGTTCGCGCCTCTGTAGCACTCCATCGCTGTGGTCGAGTTGATGTGGCATTTGTCTGTTTTAT
TAAATTCAGTCGTATTTCTTGGCTACCACACTCTTCCCAGAGCTTTTGCTCTTCCCATCCCACCAAAGAGAATAGCCTTC
AACCAAGGGATGAA-GTTCATGTGAGATGTTGCCATTTTATGTCGGGAGTTATGCGTTCAGCAAGGAAGTGATGCACATA
CAACGCCCTTGC---------------------------------------------------------------AGCTA
CCAACCTTGACGAGCATTAGCAGGACATTACAAACACGAAGACGCCTCACACGCCCAATTGAGAACGTGATGCCCATCTC
CTACGACTTAGAAAAGAACCGATTCGGAGGAATCCATACAATCTCACACATTCAACCACTGAACCACACATATCCAGAAA
TAAATATTATTACTTGTTTTAATTGCAATAAATTTGGGAAACAGCATTAAGAATGACCTGCTCATGGTTGATTCACAATC
CACTGCCTTGATCCACTTGGCAACATCTGCCCTATTCAGCTAAACTTTTTTTTCATTGATCATTATTTTATTTGTTCCGA
CCTCCGTACTTCGGTTGAGATATTGGACACATTCGTTGTAATTGATATTAGAAACCACATTAAAAACATTAATTGTTTTC
TCTCCCCTCAATGGCTATGACCAATACTACAAATAAGAAGGACGAAAGAAAATGTGTTCATGCACTAATGATGTTTTTTG
CGGGAACATGCACTAATGATGTTGCAGTCCATACTTCCGTGTTACGGACTACATGGCTGCGAAAACCCACAATAGTTCAA
CAACAACAATCGGCCGAGCCACCCCAGCTGTGGTGCATATAGATGTAGCATACGAAGCTCGATTGGAGCAAATGGGAAAC
AACATCGCCGAGGACGTCAACAACCATGTCACCAGTCAGGACCATGTTGTGCCGACAAACTAATACCAAATGAGGTGGCA
CATCCATCAAATGCATAATGGCGACACATGGCATATCGTAGATTTTGAAAAGGCTAAA
>chr4D_681
TTTTGCTTC-----------------------------------------------------------------------
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-------------------------------------------------TGTCACTCCACGGGAAGAAACACCGAACCAC
CACGCATTATG-----TGTCTGCATCCCCATGACGCTTTCCGGCCAGGACCCCCAACCCCAGCTCATTCTAAACTGTTGC
TTGCTCCAGTAGTGACAGAACCCGAAAGATTCCGCCGCTGTGCCGCTCGCCAAACACCCACCAAAACCCCACCAAAAACG
CAGTTTCTATTATATCAGGACTAGGGAAACCCTTTGCTCCCCAAGTGATATCGGTCAAACGTGCGAACACGCAAACACAA
GAAGGAGAGCCTTCCCTCCGGATCTTGACGCCGCTTCTCTTCTTGTTCGCCATGTGCGGTGGCAGACGGCGCCGTCGCGG
CGGCTCTGACGCGACGGCAGGAGAGCCCGGCGGGTGGGGGTTCTGCGCGCCAGCGCTCGCCGTCGTGGCCCTGGCGGCCG
CCGCGGCGGTCGCGTTCCTGGAGGGCACCGCCGGCGGCGTCGCCTACGCGGGCGACGGGTGGTTCCACGAGTGCGCCAAG
TGGGACGCCGAAGGCGGGAGGTTCCTGGTGTCCACCTTCTTCGGCGCCGGCGTGGCCGAGGTGCGCGTCGGGGCGGGGGA
AGAGGAGGCCCTGGCTGAGCGGGTCGTGGTGGCGGACCCCGACGTGGCCGGGAGGGTGGCGCTGGGGCTCGTCGTGGACG
CGCCCAGGCGGCGGATCCTCGTGGCCTACGCCGACCGGCCTCCGAGCTTCGGGTACGCCGCCGTGGGCGCGTACGATCTT
CGCTCGGGGCGCCGCCTCTTCCTCGCCCGGCTCGACGGACCAGGTGCGTCTCTCCACCCGTGATCGATGGCTTCTCCGCC
AGTCGTCCATATGCGAATGTTGTTGCTTTCTAGCCGTCCGATTAGGATCATCTTTGCGAAAACAACAA------------
------------------AGATTAGGGTGATCAGGTGGACCACTGAGCGGTGGGCCCTGCTCTGCCCCGTCGCCGTCAAG
AACCGTTGCGCATGGGACGCCGGACATTC----CTTCCATTGGGGAATGAACGATGAGTGGGCTGCGGCATGGGCACCAT
TAATTATGTCCACGAATGATCCATGTCGATCCTGTGGTGGCTTCCCTTCTTTTCTCTGACAAGAAGACATAAAGGGT---
----GATAGCATCTTCACATTATTAGGTGTAGGACCCTGCCGTACGAATTAGGATGCTGCTATCACTGGATTACTCGATT
TGTTGGGAACCTTGCAGTTAGCATTGATCAACTCAAACCATCCGCGATGCATCTTCCACGCACTGCACTGGAACATGTTC
CCTGCTTTCAGCTAAGGTGTTGCCGGTTAAGCACCGAGCGGTAGAAAAACTTCCTAAAACATGATTATGGACAGTATCCT
CGAATAAAAATAATTTTAAGATCAGTTTTGAGTTTTGACTGTTGGTTAGTTTATCCAAGCGATAGATGTCCTTGTTACGA
ACCATTAGTAGTTTCGTCTTGCCTGCTTAATGTAGGAAAATTTTGCTTTCTTACATCATTCGATCAAGCTCTGGCTAAGG
TACCACC---TAATTCTAATTGACTGATCTGTGTTTCATCCGCGTGCAGGCGAGTCCTCGTTCGCCGACGACGTGGCCTC
GGACGACGACGGCAACGTGTACGTGACCGACATCCTGGGCAACAAGATCTGGAAGGTGAACCCGGACGGCGAGCCGCTCT
CTGTCTTCAAGAACGCCACCTTCAGGCAGCGGCCCGGGACGATGGACAACCTCATCGGCCTCAACGGCATCGTCTACCAC
CCCAACGGCTACCTCATCGTCGTCCACACCTCCGGCGGCGACCTCTTCAAGGTGGACCCCAAGACGGGGGCCGTGAGCGT
CGTCAGGGTGCGGGGCTCGCTCAAGAGCGGCGACGGGCTGGAGCTGATCTCGCCGACGAAGCTGGCCGTCGCTGGCAAGC
CGAGCAGGCTGGTCGAGAGCTCCGACGACTGGGAGACCGCGAGCGTCACGGGACGGTATGTCGGGCCGGTGCACCGGATT
GGGTCGTCGGCGACGGTGAAGGACGGGGACGTGTACGTCAACCACATCGTCGGGTTCGGTCTCGGCAGGAAGAAGACGCA
CGTCCTCGCCAAGGCGGTGTTCGCGCCTTTGTAGCACTCCATCGATGTGGTCGAGTTGATGTGGCATTTGTCTATTTTAT
TAAATTCAGTCGTATTTCTTGGCTACCACTCTTG--------------------CCATCCCACCAAAGAGAATAGCCTTC
AACCAAGGGATGAAAGTTCATGTGATATGTTGCCATTTTATCTCGGGAGTTACGCGTTCAGCAAGGAAGTGATGCACATA
CAACGCCCTTGCCATGTCCAACCAAGTAACCACCTTGTCGAACTTCGTCTCCGCTCTTCAAGCCGGCATTGGTGTAGCTA
CCGACCTTGAC-AGCATTAGCAGGACATTACTAGACCTCACAAGTCCCTCCCGTTTGGTTCCTAGGGACTTTTTCTAGTC
TCTGGGACTAAAAAGTCCCTGAACCAAACACCCCCTCAACCACA-----------------AACCACACATATCCAGAAA
TAAATATTATTACTCGCATTAATTGCAATTGATTTGGGAAACAACATTAAGAATGACCCGCGCATGGTTGATTCACACTC
CACTGCCTTGATCCACTTGGCTACATATGCCCTATTCAGC----------------------------------------
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>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--------S--------------
-----------SSSSS---------------------------------------------------S-------SS-SS
SSSSS-------------------S------S----------------------------------S-------------
S---------SS--SS-SSS----------------------------------------------------------S-
------------S-S---------------------S-------------------------------------------
---------------------------------------S---------------------S--S---------------
-S-----------------------------------------------S------------------------------
-----------S-------------------------------------------------------------------S
---S--S--------S--------------------------S---S------------------------S--------
---------S----------------------------------------------------------------------
---------------------------------------------S-SSS-----S--S---------------------
SS-----------S-------SS--------------------------------S-SSSSS---S-SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-------SS-----------------------------------------------------
-----------------S--S------S-SSSS----------S-------S-----S-----SS---------------
-------------S--------------------------S---S-S----S----------------------S-SSSS
SSSS------------S-S---------------------S-----S--------------------S--------S---
--------S-S--S-----------S------------SS------------SS--------------------------
-----------S----S---S--------------------------------S----------S--S-----S------
---SSSS-S---SSSSSS-SSSS---------------------------------------------------------
------------------------------------------------------------S------S----------S-
--S----SSS------------------------------S---------------------------------------
-----------------S--------------------------S--------------S--------------------
-S---S------S-------------------------------------------------------------------
---------------S----------------S-----------------------------------------------
----------------S-------------------S-----------------------------------S----S--
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--------------------------------------------------S----------------S------------
----------------------------S---------------S----------------------------S------
-----------------------------S--SSSSSSSSSSSSSSSSSSSSSS--------------------------
-------------------------S---------------S----------S---------------------------
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--S--------S-------------------S-SSS-SS-S-S-S-S-S-S--SSSSS--SSS-SS-SSS-SSS-SSS--
SSSS-SSS--S---SSSS-S--SS-SS-SSSSS--SS-SSSS-SSSSSSSSSSSSSSSSSS-------------------
--------------S-SS-----------SS------------S--------------S--S---------------S--
---------------------S----S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_689
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-----------------------------GACTTCGCCCGTTTTGCTTT-------------------------------
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>reverse_2788
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-------------------------------------------------------------------AGAAGAAGACGCA
CGTCCTC-------------------------------------------------------------------------
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>forward_1805
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-------------------------TCGATCCTGTGGTGGTTTCG-----------------------------------
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>reverse_3784
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-----------------------CCATGTCACCAGTCAGGACC-------------------------------------
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