>input_sequence_45090
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-----------------------ATGGTGGCAACTGAATCAGCCTATATAATATGTCCCCCACTTAGGAACTTTGCACTG
CTGCCACCATCATCACGCT----------------CTCCGCATTCTGCAAGCAAAGAG--ATTGATCAGGGGATCATCAT
ATCGACCAGGGATATGATGGTGAAGGCGCCTGCCCACTCCTCGTCCTCGGCCGCCGCCGCCGCGGCCACCTTCTCGCTGG
TCGCCAAGAAGGCGCGGCTCTCGCCGTTCATCCTGCTGTCGCTGCTCTTCATGCTCCTCTTCTCCTTCCTCTACGGGGAA
GAGCTGGCGGCGCTCATCGGCCAGCGAGCTGGTCGACATTCGGCG---CACTTCGACGTCAGCGTCAACCGCGAGCATCA
GCAGCCGCCCGGTAAGTATCACGTTCACGATCGATCGCAGGATTAACTTGTTGCCAGCAGCGTGTAA---TATGGACGTA
CTGATCGATCTTTCCAAAAAAAAGATGGATCGGGGGTGGAGGATGGGTGGCAGAGGAAGAAGAAGAGGTGGCAGGGGAGG
CTGGCGTTCGCGGTGAACGACGAGGACGAGGACGAGGAGTGCGACGTGTTCTCGGGGAGCTGGGTGCAGGACGAGGAGGC
GCACCCGCTGTACCGGGAGGAGGAGTGCCCCTACATCCAGCCGCAGCTCACCTGCCAGGCGCAGGGGCGCCCCGACAGGG
GCTACCAGTCCTGGCGATGGCAGCCGCACGACTGCACCCTCCCCGCGTACG----CCGTCTCCCATCTTCTCTATTCTTC
CGCCATTATCGTGACGGGACTCCTCTGCTGAACTAACCTCTCTCTG-CTGCATGTATGCGCAGTTTCAACCCGACGCAGA
TGCTGGAGACGCTGCGGAACAAGCGGATGATGTTCGTGGGCGACTCGCTGAACCGCGGGCAGTTCACGTCCATGGTGTGC
CTCCTCCAGTCCGCCATCCCGTCCCCGGAGGCCAAGTCCTTCGAGATGTCCCCCGACCAGCAGCACACCGTGTTCACCGC
CAGGGAGTACAACGCGACGGTGGAGTTCTACTGGGCGCCCTTCCTGCTGCAGTCCAACGCGGACGACGCCGTGGTGCACA
AGATCTCCGACCGCATGGTGCGCAACGGCTCCATCTCCCACCACGGCCACCACTGGGAGGGCGCCGACGTGCTGGTCTTC
AACACCTACCTCTGGTGGTGCACCGGGCTGCGCTTCAGGGTCATGAACGGGCCGATCGCGGAGGCCAGGGAGGAGGACGC
GGTGTGGGTGTCGACCGAGGAGGCCTACGGCATGGCGTTCCGCGACATGCTGCAGTGGGTGAGGGACAAGATGGACTTCA
ACACCACCAGGGTCTTCTTCACCAGCATGTCGCCCACCCACGGCAAGAGCCAGGACTGGGGGGACGCGCCGGGGGGCAAC
TGCTACAACGAGACGGCGATGATCGAGGACGCCGGGTACTGGGGCACGGACGGGCGGCGGAGCGTGATGCGGGTGATCAG
GGAGATCCTCGACGGCGACGGCGCCGACGTGCCGCTCACGTTCCTCAACGTGACGCAGCTGTCCATGTACCGCAAGGACG
CGCACACCTCCATCTACAAGAAGCAGTGGAACCCGCTGACGCCGGAGCAGGTCGCCGACCCCAGGACCTACGCCGACTGC
GTCCACTGGTGCCTCCCGGGGCTCCAGGACACGTGGAACGAACTCCTCTACTCCAAGCTCTTCTACCCTTGA--------
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>chr1B_1_TraesCS1B01G240700
AGTGTTGTAAAAAAAATGAATATCAG---AAAATAAGAACATAAAAAGGTGAAGAGGAAAGGAGATGGACATGATGCCTG
TTGGTCCAACCGAACAATCAGAACAACCATTCTGACATGACGTGGAGCTGGATCGGAGGTACATCTGATGG-TTAATTGT
G------------ATGGAATTATGCAGCC----------GCGGCTCTTTCCAGCTCTCTTGGCTTAGAATCCAAGAAAAA
ACAGTTGGTTTATCAGCATTACTGTGTGCTGTGCTGTGTGGATCACCAACCACGCTTGTTCTGTAAGTCTTGTTGTGGAT
TAGTTTCGGCTGCAGCCTCGTGCA-CTGGTGCAGAGAAAAATGCATTTCATCT---TGTTCTCAGAGGTTACTCAGAGTT
GCACTTGTTCCGCAAGCCCTGTTTAGGATGGATTCAAGCCGTCAGATTCTTCTTAGAGGTGGAATGTAAGAAGAAAATCA
ATTAATTTTGCATTGCAATCAGCCAAGGGAATATAGAGACATGGACTAAACTCTTACTATGCGTTATGATGAAGCATAAT
TTGCTGCTTATTTTCCATTTTGCCTTTAACCGACAGACTACCTGATAGTTGGTATCGGTTCCTGCAGATATAGGGTAGAG
CGAGGAAGGTACAATGCT-----GTACAGTAC---ATAAATAGATGCAGATCAGCGGCAGGATCG---CCGATGAAACAG
GCCAACACGCTTGATTTTGATGCACTTTTGTTGGTGCATGCATGTCAGTACACATGTCTTCTAC---TTACAGGCTGGTG
CCGAACCTGCCAATAGCCACTGAGTGAGAAGACAACCCAGTTCAGACATTCTCAGTTTCTCTTGCTTTTGGGATTAATGG
GTTCAG-------------------CATGTGATCCGCGCCAACCCCCGCACCTGCCCTGCGCACAACAAACAGTTTAGAA
GGATCTTCCTTATCTTTCCTCGGCGAAAGAGAGAAAAAAGAAGGCATTTCCTATCACCGGCCGAGGCACTCCGAGACAGC
GACCTCGCAACGGTGAAGAACTCATGGTGGCAACTGAATCAGCCTATATAATATGTCCCCCACTTAGGAACTTTGCACTG
CTGCCACCATCATCACGCT----------------CTCCGCATTCTGCAAGCAAAGAG--ATTGATCAGGGGATCATCAT
ATCGACCAGGGATATGATGGTGAAGGCGCCTGCCCACTCCTCGTCCTCGGCCGCCGCCGCCGCGGCCACCTTCTCGCTGG
TCGCCAAGAAGGCGCGGCTCTCGCCGTTCATCCTGCTGTCGCTGCTCTTCATGCTCCTCTTCTCCTTCCTCTACGGGGAA
GAGCTGGCGGCGCTCATCGGCCAGCGAGCTGGTCGACATTCGGCG---CACTTCGACGTCAGCGTCAACCGCGAGCATCA
GCAGCCGCCCGGTAAGTATCACGTTCACGATCGATCGCAGGATTAACTTGTTGCCAGCAGCGTGTAA---TATGGACGTA
CTGATCGATCTTTCCAAAAAAAAGATGGATCGGGGGTGGAGGATGGGTGGCAGAGGAAGAAGAAGAGGTGGCAGGGGAGG
CTGGCGTTCGCGGTGAACGACGAGGACGAGGACGAGGAGTGCGACGTGTTCTCGGGGAGCTGGGTGCAGGACGAGGAGGC
GCACCCGCTGTACCGGGAGGAGGAGTGCCCCTACATCCAGCCGCAGCTCACCTGCCAGGCGCAGGGGCGCCCCGACAGGG
GCTACCAGTCCTGGCGATGGCAGCCGCACGACTGCACCCTCCCCGCGTACG----CCGTCTCCCATCTTCTCTATTCTTC
CGCCATTATCGTGACGGGACTCCTCTGCTGAACTAACCTCTCTCTG-CTGCATGTATGCGCAGTTTCAACCCGACGCAGA
TGCTGGAGACGCTGCGGAACAAGCGGATGATGTTCGTGGGCGACTCGCTGAACCGCGGGCAGTTCACGTCCATGGTGTGC
CTCCTCCAGTCCGCCATCCCGTCCCCGGAGGCCAAGTCCTTCGAGATGTCCCCCGACCAGCAGCACACCGTGTTCACCGC
CAGGGAGTACAACGCGACGGTGGAGTTCTACTGGGCGCCCTTCCTGCTGCAGTCCAACGCGGACGACGCCGTGGTGCACA
AGATCTCCGACCGCATGGTGCGCAACGGCTCCATCTCCCACCACGGCCACCACTGGGAGGGCGCCGACGTGCTGGTCTTC
AACACCTACCTCTGGTGGTGCACCGGGCTGCGCTTCAGGGTCATGAACGGGCCGATCGCGGAGGCCAGGGAGGAGGACGC
GGTGTGGGTGTCGACCGAGGAGGCCTACGGCATGGCGTTCCGCGACATGCTGCAGTGGGTGAGGGACAAGATGGACTTCA
ACACCACCAGGGTCTTCTTCACCAGCATGTCGCCCACCCACGGCAAGAGCCAGGACTGGGGGGACGCGCCGGGGGGCAAC
TGCTACAACGAGACGGCGATGATCGAGGACGCCGGGTACTGGGGCACGGACGGGCGGCGGAGCGTGATGCGGGTGATCAG
GGAGATCCTCGACGGCGACGGCGCCGACGTGCCGCTCACGTTCCTCAACGTGACGCAGCTGTCCATGTACCGCAAGGACG
CGCACACCTCCATCTACAAGAAGCAGTGGAACCCGCTGACGCCGGAGCAGGTCGCCGACCCCAGGACCTACGCCGACTGC
GTCCACTGGTGCCTCCCGGGGCTCCAGGACACGTGGAACGAACTCCTCTACTCCAAGCTCTTCTACCCTTGATCACATTT
AGTGTTTACTTACTAGG-----------TTGTGATAACCATGCCAAAGTAG----TTGAGTAGGCCTCCCGAGTAGTACA
AACCTGGTGTTTGAATTGGTGGCAACTATCATGCGTTTTGATTCCATAGCCTTAAGAAGAAGCTGCCAATGATGATGTAT
ACGGCGATGGGCGACTGCGCTGCTCCTGCCGCCGCGCCCCTCGCCGGTGCCCTGCTGCCCGCCCCGGCCCTCTCCACGGC
CCCTCCGGCGGCGGTGCCCCGGCCCTCCCCGCCCTCCCTCCCGTCCTCTCCCGCTCCTCGCGCGGA---CGGTGTGCGGT
GGGCGGATGTGGCTGCGGAGGAGGACCTCGCGGATGCCGTCGCAGCTGCGGCCGGCGCTCTCCTCCTTCCCCGGCGTTTC
GGTGACCGGTTGGCGGAGGCTGTCGCCGCGGCTCCCCCCACGGCTCCACTGGCCGGTGAGGCGATTCCCTCTCCTGGT-T
TCCTCCGCGCGGACCCCCCGCCGTTCCCCTCCCTGCTCCCCCC-TCCCCGTCCTTTGCAGCGCGGCGGCTCCTGCCCGCT
TGCACCACCTTCCCCATCTCCCCCTGGCGCTGGCAACAGTGCTAGTCGTCAGGGGCGTGGGG-CCCGGTCCTTGAACTG-
----GGGGGTGGCCGGACGGGCCGATCTCGGGGCAGCGGCGATCTCGTGGCGGCGCTTTGCTGGCGTTCGTCGACCTCCA
GGGCTGGAATTGCCTCCTCCCGGCTTGGCTCCGCCCACCGCATTATGTGGGGGCCCAAAGTTCCGGGCTTTCCGGCCAAT
CGCGGATGTGCCACTCTCCCCTCCGGCGCCGGTGGCGCTGCGGATGCAGGTGGGAACCCTTCCCTCCCCCCACGCGCCTT
CGTGTGTTGGGTTGGGCCAACGTGGGCCTTGTGGGCCGTCCACGTCGGGGGG-TCTCCTTCCCTCCCCCTGGCCCTCCTC
GGTTGGGCCGGCCCATGCTGGGCCTCGTGGGCCTCCCCTCGATCCTAGCCCATCCCAGC
>chr1A_1
AGTGTTGTAAATAAAAATTGGGTATGAGAAAAATAAGAACATAAAAAGGTGAAGAGGAAAGAAGATGGACATGATGCCTG
TTGGTCCAACCGAACAATCAGTACAACCATTCTGACATGACGTGGAGCTGGATCGGAGGTACATCTGATGGGTTAATTGT
G------------ACAGAATTATGCGGCC----------GCAGCTCTTTCCAGCTCTCTTGGCTTAGAATCCAAGAAAAA
ACAGTTGGTTTATCAGCATTACTGTG------------TGGATCACCAACTACGCTTGTTCTGCAAGTCTCGTTGCGGAT
TAGTTTCGGCTGCAGCCTCGTGCGCCTGGTGCAGACAAAAATGCATTTCATCTCCTTGTTCTCAGAGGTTGCTCAGAGTC
ACACCGGTTCTGCAAGCCTTGTTTCGGATGGATTCAAGCCGTCAGATTCTTCTCAGAGGTGGAATGTAAGAAGAAAATCA
ATCAATTTTGCATTGCAATCAGCCAAGGGTATATAGAGACATGGACTAAACTCTTAGTATGCGTTATGATGAAGCATAAT
TCGCTGCTTATTTTCCATTTTGCCTTTAACCGACAGACCACCTGATAGTTGGTATGGGTTCCTGTAGATACAGGGTAGAG
CGAGGAAGGTACAGCACAGCACAGTACAGTAC---ATAAATAGGTGCAGATCAGCAGCAGGATCATCACCGATGAAACAG
GCCAACCCGCTTGATTTTGATGCACTTTTGTTGGTGCATGCATGTCAGTACACATGTCTTGTA---GTTACAGGCTGGTG
CCGAACCTGCCAATAGCCACTGAGTGAGTTCAGACAT--------------TCAGCTTCTCTTGCTTTTGGGATTAATGA
GTTTCGAAAGGATTAATGGGCTGAACATGTGAGCCGCGCCAACCCCCGCACCTGCCCTGCGCACAACAAACAGTTTAGAA
GGATCTTCCTTATCTTTCCCCGGCAAAAGAGAGAAAAAAGAAGGCATTTCCTGTCGCCGGCCGAGGCACTCCGAGACAGC
GACCTCGCAACGGCGAAGAACTCATGGTGGCAACTGAATCAGCCTATATAGTATGCCCCCCACTATGGAACTTTGCACTG
CTGCCGCCATCATCACGCTCAAAACTTGTTTGCAGCTCCGCATTCTGCAAGCAAAGAGACATTGATCAGGGGATCATCAT
ATCGACCAGGGAGGAGATGGTGAAGGCGCCTCTCCACTCCTCGTCCTCGGCCGCCGCCGCCGCGGCCACCTTCTCGCTGG
TCGCCAAGAAGGCGCGGCTCTCGCCCTTCATCCTGCTGTCGCTGCTCTTCATGCTCCTCTTCTCCTTCCTCTACGGGGAA
GAGCTGGCGGCGCTCGTCGGCCGGCCAGCTGGTCGACATTCGGCGGCACACCTCGACGTCAGCGTCAACCGCGAGCATCA
GCAGCCGGACGGTAAGTA------TCACGATCGATCGCAGAATTACCTTGTTGCCAGCAGCGTGTAATGCTATGGACGTA
CTGATCGATCTTTCCAAAAAAAAGATGGATCGGGGGTGGAGGATGGGTGGCAGAGGAAGAAGAAGAGGTGGCAGGGGAGG
CTGGCGTTCGCGGTGAACGACGAGGACGAGGACGAGGAGTGCGACGTGTTCTCGGGGAGCTGGGTGCGGGACGAGGAGGC
GCACCCGCTGTACCGGGAGGAGGAGTGCCCCTACATCCAGCCGCAGCTCACCTGCCAGGCGCAGGGCCGCCCCGACAGGG
GCTACCAGTCCTGGCGATGGCAGCCGCACGACTGCACCCTCCCCGCGTACGTACGCCCTCTCCCATCTTTTCTCTTCTTC
CGCCATTAAC------GGACTCCTCTGCTAAACTGACCTCTCTCTG-CAATCTGCATGCGCAGGTTCAACCCGACGCAGA
TGCTGGAGACGCTGCGGAACAAGCGGATGATGTTCGTGGGCGACTCGCTGAACCGCGGGCAGTTCACGTCCATGGTGTGC
CTCCTCCAGTCCGCCATCCCGTCGCCGGACGCCAAGTCCTTCGAGATGTCCGCCGACCAGCAGCACACCGTGTTCACCGC
CAGGGAGTACAACGCGACGGTGGAGTTCTACTGGGCGCCCTTCCTGCTGCAGTCCAACGCGGACGACGCCGTGGTGCACA
AGATCTCGGACCGCATGGTGCGCAACGGCTCCATCGCCCACCACGGCCGCCACTGGGAGGGCGCCGACGTGCTGGTCTTC
AACACCTACCTCTGGTGGTGCACCGGGCTGCGCTTCAGGGTCGTGAACGGGCCGATCGCCGACGCCAGGGAGGAGGACGC
GGCGTGGGTGTCCACGGAGGAGGCCTACGGCATGGCGTTCCGGGACATGCTGCAGTGGGTGAGGGAGAACATGGACTTCA
ACACCACCAGGGTCTTCTTCACCAGCATGTCGCCCACCCACGGCAAGAGCCAGGACTGGGGCGGCGCGGCGGGGGGCAAC
TGCTACAACGAGACGGCGATGATCGAGGACGCCGGGTACTGGGGCACGGACGGGCGGCGGAGCGTGATGCGGGTGATCAG
GGAGATCCTCGACGGCGACGGCGCCGACGTGCCGCTCACGTTCCTCAACGTGACGCAGCTGTCCATGTACCGCAAGGACG
CGCACACCTCCGTCTACAAGAAGCAGTGGAGCCCGCTGACGCCGGAGCAGGTCGCCGACCCCAGGACCTACGCCGACTGC
GTCCACTGGTGCCTCCCGGGGCTCCAGGACACGTGGAACGAACTCCTCTACTCCAAGCTCTTCTACCCTTGATCACATT-
--TGTTTACTTACTAGG-----------TTGTGATAACCATGACAAAT--G----TAGAGTAGGCCTCCCG---AGTACA
AACCTGGTGTTTGAATTGGTGGTAAATATTATGCGTTTTGATTCCATTGCCTTAAGAAGAAGCTGCCAA-----------
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>chr1D_1
AGTGTTGTAAACAAAAATTGAATATGAGAAAA-TAAGAACATAAAAAGGTGAAGAGGAAAGAAGATGGACATGATGCCTG
TTGGTCCAACCGAACAATCAGAACAACCATTCTGACATGACCTGGAGCTGGATCGGAGGTACATCTGATGGGTTGGGTTA
ATTAATTGTACTAATGGAATTATGTGATGGCTGCAGGAAGCAGCTCTTTCCAGCTCTCTTGGCTTAGAATCCAAGAAAAA
ACAGTTGGTTTATCAGCATTACTGTG------------TGGATCACCAACTACGCTTGTTCTGCAAGTCTCGTTGTGGAT
TAGTTTCGGCTGCAGCCTGGTGCGCCTGGTGCAGACAAAG-TGCATTTCATCTCCCTGTTCTCAGAGGTTACTCAGAGTT
ACACTTGTTCTGCAAGCCTTGTTTAGGATGGATTCAGACCGTCAGATTCTTCTCAGAGGTGGAATGTAAGAAGAAAATCA
AATAATTTTGCATTGCAATCAGCCAATAGAATATAGAGACATGGGCTAAACTCTTACTATGCGTTATGATGAAGCATAAT
TCCCTGCTTATTTTCCATTTTGCCTTTAACGGACAGACTACCTGACAGTTGGTATGGGTTCCTGTAGATACAGGGTAGAG
CGAGGAAGGTACAGCACAGTACAGTACAGTACATAATAAATAGGTGCAGATCAGCAGCAGGATCG---CCGATGAAACAG
GCCAACCCGCTTGATTTTGATGCACTTTTGTTGGTGCATGCATGTGAGTACACATGTCTTGTACTAGTTACAGGCTGGTG
CCGAACCTGCCAATAGCCACTGAGTGAGTTCAGACAT--------------TCAGTTTCTCTTGCTTTTGGGATTAATGA
GTTCCAAAATGATTAATGGGCTGAACATGTGATCCGCGCCAACCCCCGCACCTGCCCTGCGCACAA---ACAGTTTAGAA
GGATCTTCCTCATCTTTCCTCGGCGAAAGAGAGAAAAAAGAAGGCATTTCCTGTCACCGGCCGAGGCACTCCGAGACAGC
GACCTCCCAACGGTGAAGAACTCATGGTGGCAACTGAATCAGCCTATATAATATGTCCCCCACTTACGAACTTTGCACTG
CTGCCGCCATCATCACGCTCAAATCTTGTTTGCAGCTCCGCATTCTGCAAGCAAAGTGATATTGATCAGGGGATCATCAT
ATCGACCAGGG-----ATGGTGAAGGCGCCTCTCCACTCCTCGTCCTCGGCCGCCGCCGCCGCGGCCACCTTCTCGCTGG
TCGCCAAGAAGGCGCGGCTCTCGCCCTTCATCCTGCTGTCGCTGCTCTTCATGCTCCTCTTCTCCTTCCTCTACGGGGAA
GAGCTCGCGGCGCTCATCGGCCGGCGAGCTAGTCGAAACTGGGC---ACACCTCGACGTCAGCGTCAACCGCGAGCATCA
GCAGCCGCCCGGTAAGTATCACGTTCACGATCGATCGCAGAATTAACCTGTTGCCAGCAGCGTGCAATACTATGGACGTA
CTGATCGATCTTTCCAAAAAAAGG-TGGATCGGGGGTGGAGGATGGGTGGCAGAGGAAGAAGAAGAGGTGGCAGGGGAAG
CTGGCGTTCGCGGTGAATGACGAGGACGAGGACGAGGAGTGCGACGTGTTCTCGGGGAGCTGGGTGCGGGACGAGGAGGC
GCACCCGCTGTACCGGGAGGAGGAGTGCCCCTACATCCAGCCGCAGCTCACCTGCCAGGCGCAGGGCCGCCCCGACAGGG
GCTACCAGTCCTGGCGATGGCAGCCGCACGACTGCACCCTCCCCGCGTACGTACGCCGGCTCCCATCTTTTCTATTCTTC
CGCCATTACC------GGACTCCTCTGCTAAACTAACTAACCTCTCTCTGCATGCATGCGCAGGTTCAACCCGACGCAGA
TGCTGGAGACGCTGCGGGGCAAGCGGATGATGTTCGTGGGCGACTCGCTGAACCGCGGGCAGTTCACGTCCATGGTGTGC
CTCCTCCAGTCCGCCATCCCGTCGCCGGAGGCCAAGTCCTTCGAGATGTCCCCCGACCAGCAGCACACCGTGTTCACCGC
CAGGGAGTACAACGCGACGGTGGAGTTCTACTGGGCGCCCTTCCTGCTGCAGTCCAACGCGGACGACGCCGTGGTGCACA
AGATCTCCGACCGCATGGTGCGCAACGGCTCCATCGCCCACCACGGCCGCCACTGGGAGGGCGCCGACGTCCTGGTCTTC
AACACCTACCTCTGGTGGTGCACCGGCCTGCGCTTCAGGGTCGTGAACGGGCCGATCGCGGGGGCCAGGGAGGAGGACGC
GGCGTGGGTGTCGACCGAGGAGGCCTACGGCATGGCGTTCCGCGACATGCTGCAGTGGGTGAGGGACAACATGGACTTCA
ACACCACCAGGGTCTTCTTCACCAGCATGTCGCCCACCCACGGCAAGAGCCAGGACTGGGGGGGCGCGGCGGGGGGCAAC
TGCTACAACGAGACGGCGATGATCGAGGACGCCGGGTACTGGGGCACGGACGGGCGGCGGAGCGTGATGCGGGTGATCGG
GGAGATCCTCGACGGCGACGGTGCCGACGTGCCGCTCACCTTCCTCAACGTCACGCAGCTTTCCATGTACCGCAAGGACG
CGCACACCTCCATCTACAAGAAGCAGTGGAACCCGCTGACGCCGGAGCAGGTCGCCGACCCCAGGACCTACGCCGACTGC
GTCCACTGGTGCCTCCCGGGGCTCCAGGACACGTGGAACGAACTCCTCTACTCCAAGCTCTTCTACCCTTGATCACATTT
--TGTTTACTTACTAGTAGGTTGTAAACTTGTAATAACCATGACAAGTACTCCTATAGAGTAGGCCTCCCG---AGTACA
AACCTGGTGTTTGAATTGGTGGCAACTATCATGCGTTTTGATTCCATAGCCTTAAGA-----------------------
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>chr4A_2856
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--GGCGATGGTCGTCTGCGCTGCTCCTGCCGCCGCGCCCCTCGCCGGTGCCCTGCTGCCCGCCCCGGCCCTCTCCACGGC
CCCTTCGGCGGCGGTGCCCGGGCCCTCCCCGCCCTCCCTCCCGTCCTCTCCCGCTCCTCGTGCGGA---CGGCGTGCGGT
GGGCGGATGTGGCTGCGGAGGAGGACCTCGCGGATGCCGTCGTAGCTGCGGCCGGCGCTCTCCTCCTTCCCCGGCGTTTC
GGTGACCGGTTGGCGGAGGCTGTCGCCGTGGCTCCCCCCACGGCTCCACTGGCCGGTGAGGCGATTCTCTCTCCTGGT-T
TCCTCTGCGCGGACCCCCCGCCGTTCCCCTCCCTGCT-CCCCC-TCCCCGTCCTTTGTAGCGCGGCGGCTCCCGCCCGCT
TGCACCACCTTCCCCATCTCCCCCTGGCGCTGGCAACAGTGCTAGTCGTCAGGGGCGTGGGG-CCCGGTCCTTGAACTGG
GGGGGGGGGTGGCCGGACGGGCCGATCTCGGGGCAGCGGCGATCTCGTGGCGGCGCTTTGCCGGCGTTCGTCGACCTCCA
CGGCTGGAATTGCCTCCTCCCGGCTTGGCTCTGCCCACCGCATTCTGTGGGGGCCCGAAGTTCCGGGCTTTCCGGCCAAT
CGCGGCTGTGCCACTCTCCCCTCCAGTGCCGGCGGCGCTGCGGACGCAGGTGGGAACCCTTCCCTCCCCCCACGCGCCTT
CGTGTGTTGGGTTGGGCCAACGTGGGCCTTGTGGGCCGTCCACGTCGGGGGG-TCTCCTTCCCTCCCCCTGGCCCTCCTC
GGTTGGGCCGGCCCATGCTGGGCCTCGTGGGCCTCCCCTCGATCCTGGCCCATCCCAGC
>chrUn_2859
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-----GATGGGCGACTGCGCTGCTCCTGCCGCCGCGCCCCTCGCCGGTGCCCTGCTGCCCTCCCCGGCCCTCTCCACGGC
CCCTCCGGCGGCGGTGCCCCGGCCTTCCCCGCCCTCCGTCCCGTCCTCTCCCGCTCCTCGCGCGGA---CGGCGTGCGGT
GGGCGGATGTGGCTGCGGAGGAGGACCTCGCGGATGCCGTCGCAGCTGCGGCCGGCGCTCTCCTCCTTCCCCGGCATTTC
GGTGACCGGTTGGCGGAGGCTGTCGCCGCGGCTCCCTCCACGGCTCGACTGGCTGGTGAGGCAATTCCCTCTCCTGGT-T
TCCTCCGCGCGGACCCCCCGCCGTTCCCCTCCCTGCTCCCCCC-TCCCCGTCCTTTGCAGCGCGGCGGCTCCCGCCCGCT
TGCACCACCTTCCCCATCTCCCCCTGGCGCTGGCAACAGTGCTAGTCGTCAGGGGCGTGGGG-CCCGGTCCTTGAACTG-
----GGGGGTGGCCGGACGGGCCGATCTCGGGGCAGCGGCGATCTCGTGGCGGCGATTTGCTGGCGTTCGTCGACCTCCA
CGGCTGGAATTGCCTCCTCCCGGCTTGGCTTCGCCCACCGCATTCTGTGGGGGCCCAAAGTTCCGGGCTTTCCGGCCAAT
CGCGGCTGTGCCACTCTCCCCTCCGGCGCCGGCGGCGCTGCGGACGCAGGTGGGAACCCTTCCCTCCCCCCACGTGCCTT
CTTGTGTTGGGTTGGGCCGACGTGGGCCTTGTGGGCCGTCCACGTCGGGGGG-TCTCCTTCCCTCCCCCTGGCCCTCCTC
GGTTGGGTCGGCCCATGCTGGGCCTCGTGGGCCTCCCCTCGATCCTTGCCCATCCCAGC
>chr4B_2859
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-----GATGGGCGACTGCGCCGCCCCTGCCGCGGCGCCCCTCGCCGGAGCCCTGCTGCCCGCCCCGGCACCCTCGTCGGC
CCCTCCGACGGCGACGCCCCGTCCCCCCCTGCCTCCCGCCTCGTCCTCTCCCGCTCCCCGCATGGACGGCGGTGTGCGGT
GGGCAGATGTGGCCGCCGAGGAAGACCTCACGGATGCCGTCGCAGCTGCGGCCGGCGATCTCCTCCCCCCCCGGCGTTTC
GATGACCGGCTGGCGGAGGCCATCGCCGTGGAACCCGCCGCGGCCCATCCGGCGGATGTTGCGATCCCTTCTCCCGGC-C
CCCTCCGCGTTGACCCCCTACCGC-CCCCTCCCTGCTCCCCCT-TCCCCGTCCCTTGTAGCGCGGTGAAGCTCGCCCGCC
TGCACCACCTTCCCCACCTCCCCCTGGCGTTGGCAATGGCGCTAGACGGCGGGGGCGTGGGG-CCCGGTCCTTGAACTG-
----GGGGGTGGCCGGACGGGCTGATCTCGGGGCGGCGGCGGTCTCGTGACGGCGCTCGGCGGTCATTCGTCGGCCTCCA
CCACTGCTCTTGTCCCTCCCTGGCTTGGCTCCACCCACCGCAACCTATGGAGGCCCGAAGTTCCGTGCTTTCCGGCCTAG
TGCGGCTGCGCCCCGTTCTCCTCCGGCGCCGGCGGCGCCCCGGTCGCAGGGGGAAACCCTTCCCTCCCTCCACGCGCCCT
CGTGTGTTGGGCTGGGCCGACGTGGGCCTTGTGGGCCGCCTATGTCGGGGGG-TCTCCTTCCCCCCCCTTGGCCCACCTC
GGGTGGCCCGGTATATGTTGGACCGCGTGGGCCTCCCCCCGAGCCTGGCCCATCCCGGC
>chr2D_2864
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----------GCGATTGCGCCGCCCCCGTCCTCGCGCCCCTTGCCGGCGGCTTGCTTCCCGCCCCTGTCCC--CCCCGGC
TCCTCCGTCGGCGACGCCCCGGCCCTCCCCACCCTCACCCCCGTCCTCTCCCGCCCCTCGCGCAGA---CGGCCTGCGGT
GGGCGGACGTGGCCGCGGAGGAGGATCTCGTGGATGCTGCCGCGGCGGCAGCAGGCGCTCGCCTCCCTCCCCGGCGTTTT
GGTGACCGGCTGGCTGAGGCCGTCGCCGCTTCTCTCCCAGCTGCTCCTCCGGCCGGTGATGCGATCCCCTCTCCCGGC-C
CCCTCATCGCTG-CCCCCCGTCGATTCCCTCCCTGCTCCCCCC-TCCCCGTCCTTTGCAGCGCGGCGGCTCCCGCCCATC
TGCACCACCTTCCCCACCTCCCCCTGGCGCTGGCAGCGGTGCTAGTCGTCGGGGTCGT-GGGGCCCGGTCCTTGAACTG-
----GGGGGTGGCCGGACGGGCCGATCTCGGGATGGCGGCGCTCTCGTGGCGGCGTTCTGCCGACGCTCGTCGGTCCCCG
CGGCTGGAATTGGCCCCTCCTTGCTCGGCTCCGGCCGCTGCAGTGCGTGGGGGCCCAAAATTCCGCGCTTTCCGGCCGGT
CCCGGCCGTGCCGTGCTCTCCGTCGGCGCCGGCAGCGCTGCGGTTGCGGGTGGAAACCCTTCCCTCCCCC-AGGCGCCCC
CGTGTGGTGGACTGGGCCGACGTGGGCCTTGTGGGCCGGCCACGTCGGGGGGGGCTCCTTCCCTCTCCCTGGCCTTCCTT
GGTTGGGTCGGCCCAAGCTGGGCCGAGCGGGTCTCTCCCCTC-----------------
>chr1A_2881
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---------------------------GCCGCCACGCCCTTCGCCGGCGACCTGCCGTCCGCCCCGGCTCTCTCCGCGGC
CCCTCCGGCGGCGGTGCCCCGGCCCCTCACGCCCTCCCTCCCGCCCTCCCCCGCTCCTCGCGCGGT---CGGCGTTCGGT
GGGCGGATGTGGCTGCGGAGGAGGATCTCGCGGACGCCGTCGCAGCTGCGGCCGACGCTCTCCTTCCTCCCAGGCGTTTC
GGTGACCGATTGGCGGAGGCCGTCGCCACGGCTCCTCTCGCGGCTCCTCTGGCCGGGGATGTGATCCCCCCCTCCGGGAT
TCCTCCACGCAGACCCCCTGCCGCTTCCTTCCCTGCTCCCCCT-CCCCCGTCCCTTGCAGCGCGGCGGCCTCCGCCCGCT
TGCACCACCTTCCCCATCTCCCCCTAGTGCTGGCAATGGTACCAGTCGTCGGGGACGT-GGGTCCCGGTCCTCGAACTG-
----GGGGGTGGCCGGACGGGCCGATCTCGGGACGGCGGCGCTCTCGTGGCGGCTCTCGGCTAGCTCCCGTCGTCCACCT
CGGCTGGAGCTGCCCCTCCCCGGCGTGGCTCCGCCAACCGCCGTCGGTGGGGGCCCTAAGTTCCGTGCTTTCCGGCCAAT
CGCGGCGGTGTCGTGCTCCCCTCCGGCGTCGGCGGCGCGGCCGTCGCAGGTGGAAACCCTTCCCTCCCTCCACGCTCCCG
TGCGTGTTGGGTTGGGCCAACTTGGGCCTTGTGGGCCGTCCAAGTCGGGGGG-TATCCTCCCCTCTCCCTGGCCTGCCCC
AGTTGGGCCGGCCCGAGCTAGTCCTCGTGGGCCTCCCCCCGATACGAGCCCGTCCCAGC
>chr1B_2939
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-----CGGCGGCGATGCCCCGGCCCTCCCCGCCCTCCCTCCCGTCCTCTCCCGCTCCTCGCGCGGA---CGGCGTGCGGT
GGGCGGATGTGGCTGCGGAGGAGGACCTCGCGGATGCCGTCGCAGCTGCGGCCAGCGTTCTCCTCCTTCCCCAGCGTTTC
GGTGACCGGTTGGCGGAGGCTGTCGCCGCGGCTCCCCCCACGGCTCCACTGGCCGGTGAGGCGATTCCCTCTCCTGGT-T
TCCTCCGCGCGGACCCTCCGCCGTTCCCCTCCCTGCTCCCCCC-TCCCCGTCCTTTGCAGCATGGTGGCTCCCGCCCGCT
TGCACCACCTTCCCCATCTCCCCCTGGCGCTGGCAACAGTGCTAGTCGTCAGGGACGT-GGG-CCCGGTCCTTGAATTG-
----GGGGGTGGCCGGACGGGCCGATCTCGGGGCAGCGGCGATCTCGTGGCGGCGCTTTGCTGGCGTTCGTCGACCTCCA
CGGCTGGAATTGCCTCCTCCCGGCTTGGCTCCGCCCACCGCATTTTGTGGGGGCCCAAAGTTCCAGGCTTTCCGGCCAAT
CGCGGTTGTGCCACTCTCCCCTCCGGCGCCGGCGGCGCTGCGGACGCAGGTGGGAACCCTTCCCTCCCCCCACGCGCCTT
CGTGTGTTGGGTTGGGCCGACGTGGGCCTTGTGGGCCGTCCACGTCGGGGGG-TCTCCTTCCCTCCCCCTGGCCCTCCTC
GGTTGGGCCGGCCCATGCTGGGCCTCGTGGGCCTCCCCTCGATCCTGGCCCATCCCAGC
>chr4D_2973
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---------------------------------------CCCGTCCTCTCCCGCCCCTCGCGCGGA---CGGCCTGCGGT
GGGCGGACGTGGCTGCGGAGGAGGATCTCGCGGATGCTGCCGCGGCGGCGGCAGGCGCTCGCCTCCCTCCCCGGCGTTTC
GGTGACCGGCTAGCTGAGGCCGTCGCCGCTTCTCTCCCAGCTGCTCCCCCGGCCGGTGATGCGATCCCCTGTTCCGGC-C
CCCTCATCGCTGACCCCCCGTCGATTCCCTCCCTGCT-CCCCC-TCCCCGTCCTTTGCAGCGCGGCGGCTCCCGCCCATC
TGCACCACCTTCCCCACCTCCCCTTGGCGCTGGCAGCGGTGCTAGTCGTCGGGGTCGT-GGGGCCCGGTCCTTGAACTG-
----GGGGGTGGCCGGACGGGCCGATCTCGGGATGGCGGCGCTCTCGTGGCGGCGTTCTGCCGACGCTCGTCGATCCCAG
CGGCTGGAATTGGCCCCTCCCTCCTCGGCTCCGGCCGCTGCAGTGCGTGGGGGCCCAAAATTCCGCGCTTTCCGGCCGGT
CCGGGCCGTGCCGTGCTCTCCGTCGGCGCCGGCGGCGCTGCGGTCGCGGGTGGAAACCCTTCCCTCCCCCCACGCGCCCC
CGTGTGGTCGGCTGGGCCGACGTGGGCCTTGTGGGCCGGCCACGTTGGGGGG-GCTCCTTCCCTCTCCCTGGCCTTCCTT
AGTTGGGCCGGCCCAAGCTGGGCCGAGCGGGTCTCTCCCCTCCCCCGGCCCAACCCAGC
>chr5D_3008
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-----------------------------------------------------------------------------GGT
TGGCGGACGTGGCTGCGGAGGAGGATCTCGCGGATGCTGCCGCGGCGGCGGCAGGCGCTCGCCTCCCTCCCCGGCGTTTC
CGTGACCGGCTGGCTGAGGCCGTCGCCGCTTCTCTCCCAGCTGCTCCCCCGGCCGGTGATGCGATCCCCTCTCCCGGC-C
CCCTCATCGCTGACCCCCCGTCGATCCCCTCCCTGCT-CCCCCCTTCCCGTCCTTTGCAGCGCGGCGGCTCCCGCCCATC
TGCACCACCTTCCCCACCTCCCCCTGGCGCTGGCAGCGGTGCTAGTCGTCGGGGTCGT-GGGGCCCGGTCCTTGAACTG-
----GGGGGTGGCCGGACGGGCCGATCTCGGGATGGCGGCGCTCTCGTGGCGGCGTTCTGCCGACGCTCGTCGGTCCCCG
CGGCTGGAATTGGCCCCTCCTTGCTCGGCTCCGGCCGCTGCAGTGCGTGGGGGCCCAAAATTCCGCGCTTTCCGGCCGGT
CCCGGCCGTGCCGTGCTCTCCGTCGGCGCCGGCGGCGCTGCGGTCGCGGGTGGAAACCCTTCCCTCCCCCCACGCGCCCC
CGTGTGGTGGGCTGGGCCGACGTGGGCCTTGTGGGCCGGCCACGTCGAGGGG-GCTCCTTCCCTCTCCCTGGC-TTCCTT
GGTTGGGCCGGCCCAAGCTGGGCCGAGCGGGTCTCTCCCCTCCCCCGGCCCAACCCAGC
>chr7A_3033
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----------------------GGACCTCGCGGATGCCGCCGCGGCGGCGGCCGGCGCTCGCCTCCCTCCCCGGCGTTTC
GGTGACCAGCTGGCGGAGGCTGTCGCCGCTGCTCTCCCTGCTGCTCCACCGACCGGTGATGCGTTCCCCTCTCTCGGA-C
CCCTCCTCGCTGGCCCCCCGTCGTTCCCCTCCATGCT-CCCCCCTTCCCGTCCTTTGCAGCGCGGCGGCTCCCGCCCACC
TGCACCACCTTCCCCACCTCCCCCTGGCGTTGGCAGTGGTGCTAGTCGTCGGGGGCGT-GGGGCCCGGTCCTTGAACTG-
----GGGGGTGGCCGGACGGGCCGATCTCGGGACGGCGGCGATCTCGTGGCGGCGTTCTGCTGGCGTTCGTCGGCCCCCG
TGGCTGGAATTGGCCCCTTCCTGCTTGGCTCCGGCCGCCGCAGTGTGTGGGGGCCCAAAGTTCCGGGCTTTCCGGGCGGT
CGCGGCCGTGCCATGCTCTCCATCGGCGCCGGCGGCGTTGCGATCGCGGGTGGAAACCCTTCCCTCCCCCCACGCGCCCG
TGTGTGTTGGGCTGGGCCGACGTAGGCCTTGTGGGCCGTCCACATCGGGGGG-TCTCCTTCCCTCTCCCTGGCCTACTTT
GGTTGGGCCGGCCCAAGCTGGGCCGAGTGGGTCTCTCCTCTCCCCCGGCCCAACCCAGC
>SNPs
-----------S----SSSSS--SS------------------------------------S------------------
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-------------------------S---------------S--------------------------------------
--------------------------SSSSSSSSSSSS------------S------------S------S---------
-----------------------S-----------S--------------------------------------------
S---------S-------S----------------------------------S--------------------------
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-S-----------------------------------------------------S--------S-----S---------
-------------SSS-S-------------------------S-----------S------------------------
------S-----------------------------------------------------S-------------------
----------------------------SSS-S-SSSSSSSSSSSSSSSSS----------------------------S
----S---------------------------------------------------------------------------
----------------------------------------------------S---------------------------
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-----S--------------------------------------------------------------------------
------------SSS----------------SS-----------------------------------------------
-------------------------S------------------------------------------------------
----------------------S----------------------------S----------------------------
----------------------------------------S---------------------------------------
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-------------------------------------------------------------------S------------
------------------------------------------------------------------S-------------
---------------------------------------------------------------------S----------
--------S-SSSSSS-------------S------------------------S--------S----------------
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-----------------------S--------------------------------------------------------
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-----------------------------------S------------S-------------------------------
------------------------------------------S-------------------------------------
--S------------------------------------------------------------------S----------
---------------------------------------------------------------S----S-----------
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SS----------------------------------------S----SSS------S--------------SSS------
---------------------------------------------------------------------SSSSSSSSSSS
SS------------------------------------------------------------------------------
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------------------------------------------------------------------------S-------
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S-------------------------------------------S-----------------------------------
-----S--------------------------S-----------------------------------------------
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>forward_202
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----------------------GATGGAATTATGCAGCCGCG--------------------------------------
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>reverse_1213
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------------TATGATGGTGAAGGCGCCTG------------------------------------------------
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-----------------------------------------------------------
>forward_304
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--------------------------------------------ACCAACCACGCTTGTTCTGT----------------
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>reverse_1895
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------------------------------------------------------TATGCGCAGTTTCAACCCGA------
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>forward_1232
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------------TATGATGGTGAAGGCGCCTG------------------------------------------------
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>reverse_2953
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------------------------------------------------------------------------TGATGTAT
ACGGCGATGGGC--------------------------------------------------------------------
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-----------------------------------------------------------
