>input_sequence_45040
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ATGGGGAGTATCATGAAACTATATTATGAGTGGGAAAT
CCAGGTGCTTGTGCTCCTTAGCTTCATGCTACAAATGTTCCTCTTCTTCGCTGGCAGCCTTCGGCGGCGTACCATCAACT
CGTTTCTCAGGTTCTTCACATGGATAGCTTATCTGGGCGCGGACTTAGTGGCAGTTTACACCCTGGGCTATCTCTCACGC
CATGAGGATGCGACCACCGGACTATCTTTCTTCTGGGCACCATTTCTTCTCATCCATCTTGGTGGACAGGACACCATTAC
TGCTCTCGCCATGGAGGACAACAAGTTGTGGTTGAGACATTTACTGACTCTGTTTATGCAAGTTGTCCTAGCTTTATATG
TTTTCTGGAAGTCTATTGACAAACACGGCGTGGAGCTTCTAGTTTCAGATGTCTTTGTGTTTGCTGCTGGAATTATCAAG
TATGGAGAAAGGGTATGGTCTCTCAAGTGTGGGAGCTTTGAAACCCTCGAGGGTTCCACTGGACAACAGTACAAGCAACA
GGTGCCGGGAGAGGTTGCCGAGGATCCCTATTCTCACATTGTTTGCGCTGTCCTGCATCGTATGCCACGTGTCTTTCGAA
TCTTTACAGCACGATCAGGTGATAGCGGTAATGTTATCCAAGAAACCCCAAGCAATTGGGTGAAGCGGATGAGGCTCGAG
CTTGGCATGATGTACGATGACCTGTATACTAAGTCCTGTGTGCTCAGAACAAGGAGTGGCATCATATTGCGATGCATCTC
TCAGGTGTCTGTTCTGGTTGCCTTGGTGCTCTTCCTCACGAGCGACAAACGGAGGTACAATAGAGCCGACATTGCAATCA
CCTGGTCGCTCTTCGTAGGATGCTTTTTGTTGGAAGTATGTGCCATGTTTATTTTGATAATGTCACCATGGTCCTGGGCG
TGGTTGAAGATGCGAAGGTGCAGCATGCTTGCAAAGTTGTCCTGGTTTCTCCTGTGCAGTGGCATTGGATGGCCGGAGAG
GAAGCCATATCTAAATTCAATTGGGCAGTACAACTTCCACAGGTGGTTGGATGCAGGCAGCGACCAGCCAAGGTCATATG
GTCGACGAGCAATGACCACAGTGATCAAAAGCTTGGTGAGTTTGGTTGGTGTCAAAGAGGATAAAATGTTGTTCTGGATG
AGCAGGTTGTTAGACACCGAGCACGTGGAGGCAGATAAGGATACGATGGAGTGTGTTGTGAAGGGAATTACTGACTTCGA
TGCTGAGATCAACAGAGATCCCCGGCATTGGCCAAAACTTGGCGGCATAGTGCAAGAGCTACAAGACATTCGTGAAGATT
TTGGTGGAAAGGTTGCCTTAGTGCATTTTATCACAGAGGCACACTTGAGAAAATATCCTCTTCATCCTCCTTCGGACATG
GAGACAGACACAGGTACGAGCTGCATTGTCTTGGTGGAAGTATGTCGGAAACTATCCAACTACATGGCATACCTTTTGGT
CACCCACCCTTCGATGCTGCCGCTCAATGACAGCGCCTTATATACGCTGGAGAAAATGGCACACTTGTTTCCACATCTTA
TAGATGAGCAGCAGGATTCTGAAGGTTTCTTCAACATCGAGCCAAGCATGGAAACACTGCAGGAGTTGGTAGACATATGG
ACGAAGCTGCTCATCTATGCGGCCACCAAGTCCCGGCCGGAGCTGCACGCGGCGCACTTGGCTAG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3D_1_TraesCS3D01G471800
CAGGCTTGAAAATCCGTTTCCGCTTGTGTAAGACGCATA-CGCTGTGAAAATACGGTCCACTCTGCCTCCCCCCTCCGGA
CTAGATCTGGCTTCCTGGAAGAGACAGCCAGCTTGAGCTCCC-CTTCCGCACTAGCCGTCCACCTGAGACCCGGACCAGT
GGCCGCCGCCATTGAGCTCCAGCCGGACCGATCCGCTCTTCAGGTTAGGCCTCGCCCGACTCATCATTTGCTCTGCTCCT
CCCCAGGATCCACTCTGCTTCTGCTTTTGGTCAGAGGAGCAAGTTACTTTTTT---CTTTAGAACGGGTAGAGGGACAAG
TGCGTCAAGAAATCTCGGCTGTGGCCATCTCCGACGGTGGGCGACGGCCGGCTCTCATTCCTGACCCGACGACCATGCCC
AAGACAGAGCAACAACCTCTTCCCTCTTGTTCTTGCTCTTGCAGTAATAAACA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TTTTTAC-CCTTTTCCATGTCTGGGCCCACACGTCATTTGTTTTAGG
ACGATTTTGCCCTCGGGCCGGTCGTTTCACCTGGTCTGGTTCGACCCAGCCTTGCGTGCTCCAATGAAACGACCAAACAC
AGAAGGCCGCCTT-------------------------------------------------------------------
-----------AGTCCAGGCCCATATTCGTTGTCGCTGA----TAGTTTTTCATTTTT-TGAAATGTTCGATTCTTTTCT
TTTTTGAGAAAACTGCGCATT-GCGAATTTCTGAAAGTACATCCCTGATTTGCATTTCCCTTTTACGTCCAGTACAAATT
A-AAGATTGAAGTACGAATTTCTACTTCCCCACACTGACTAACTGGATTTGGTAATTTATTATTTTGT-TGTTTTTGAGT
TTACGCTTGCAAAACTAAA-----ATGACATAATATC----TATTTTCAAGTGCTAGCAGTAGCAGATATACTACTGAGA
AGGATTCTTGCTACTTTTCAAGTGTGTCGTACTAAAAGCTTCTGATTGCTTCAGCAAAAA-GGAAAATATGATGAAACTA
TTCTGTCCAACAGGTACGTGGTTCGAGACACTGGAAATCTAGATGGGGAGTATCATGAAACTATATTATGAGTGGGAAAT
CCAGGTGCTTGTGCTCCTTAGCTTCATGCTACAAATGTTCCTCTTCTTCGCTGGCAGCCTTCGGCGGCGTACCATCAACT
CGTTTCTCAGGTTCTTCACATGGATAGCTTATCTGGGCGCGGACTTAGTGGCAGTTTACACCCTGGGCTATCTCTCACGC
CATGAGGATGCGACCACCGGACTATCTTTCTTCTGGGCACCATTTCTTCTCATCCATCTTGGTGGACAGGACACCATTAC
TGCTCTCGCCATGGAGGACAACAAGTTGTGGTTGAGACATTTACTGACTCTGTTTATGCAAGTTGTCCTAGCTTTATATG
TTTTCTGGAAGTCTATTGACAAACACGGCGTGGAGCTTCTAGTTTCAGATGTCTTTGTGTTTGCTGCTGGAATTATCAAG
TATGGAGAAAGGGTATGGTCTCTCAAGTGTGGGAGCTTTGAAACCCTCGAGGGTTCCACTGGACAACAGTACAAGCAACA
GGTGCCGGGAGAGGTTGCCGAGGATCCCTATTCTCACATTGTTTGCGCTGTCCTGCATCGTATGCCACGTGTCTTTCGAA
TCTTTACAGCACGATCAGGTGATAGCGGTAATGTTATCCAAGAAACCCCAAGCAATTGGGTGAAGCGGATGAGGCTCGAG
CTTGGCATGATGTACGATGACCTGTATACTAAGTCCTGTGTGCTCAGAACAAGGAGTGGCATCATATTGCGATGCATCTC
TCAGGTGTCTGTTCTGGTTGCCTTGGTGCTCTTCCTCACGAGCGACAAACGGAGGTACAATAGAGCCGACATTGCAATCA
CCTGGTCGCTCTTCGTAGGATGCTTTTTGTTGGAAGTATGTGCCATGTTTATTTTGATAATGTCACCATGGTCCTGGGCG
TGGTTGAAGATGCGAAGGTGCAGCATGCTTGCAAAGTTGTCCTGGTTTCTCCTGTGCAGTGGCATTGGATGGCCGGAGAG
GAAGCCATATCTAAATTCAATTGGGCAGTACAACTTCCACAGGTGGTTGGATGCAGGCAGCGACCAGCCAAGGTCATATG
GTCGACGAGCAATGACCACAGTGATCAAAAGCTTGGTGAGTTTGGTTGGTGTCAAAGAGGATAAAATGTTGTTCTGGATG
AGCAGGTTGTTAGACACCGAGCACGTGGAGGCAGATAAGGATACGATGGAGTGTGTTGTGAAGGGAATTACTGACTTCGA
TGCTGAGATCAACAGAGATCCCCGGCATTGGCCAAAACTTGGCGGCATAGTGCAAGAGCTACAAGACATTCGTGAAGATT
TTGGTGGAAAGGTTGCCTTAGTGCATTTTATCACAGAGGCACACTTGAGAAAATATCCTCTTCATCCTCCTTCGGACATG
GAGACAGACACAGGTACGAGCTGCATTGTCTTGGTGGAAGTATGTCGGAAACTATCCAACTACATGGCATACCTTTTGGT
CACCCACCCTTCGATGCTGCCGCTCAATGACAGCGCCTTATATACGCTGGAGAAAATGGCACACTTGTTTCCACATCTTA
TAGATGAGCAGCAGGATTCTGAAGGTTTCTTCAACATCGAGCCAAGCATGGAAACACTGCAGGAGTTGGTAGACATATGG
ACGAAGCTGCTCATCTATGCGGCCACCAAGTCCCGGCCGGAGCTGCACGCGGCGCACTTGGCTAGAGGAGGGGAGCTTAT
CACCTTCGCCTGGCTGTTCTTGAGCCACAACTTTTTGGGAGATTCCGAGGTGATCAAGGTGCAGCTTACCAATGCCAATC
AAAGAGGGACGATAGCATACGTCTTCGGAAATCCTGCACCAAGATAAGAGCATCAGATCCAACACAAGCCCTGCAGAGTG
CAGACTCCTCCGTTCTTCATTCGATTTGATTTTATTCCTCTTCTGTTTGCGTCTGGAGTATCTCACGACACAAAACAGTA
CTGAAGTTTATACAGTATCGCAGCTGACATCTAGAGGTATGTGACATTTTTTTTTTTGCAGTAATGGCATCACTTCAAAA
CTGATGTATTTGAGTGAATAGGCAGTGCAAAA------------------------------------------------
-------------------------------------ACATTCCTTTGTTGTGGTAGCATCATTTATACACTGCAGCTAC
AATTGGGATCCTTAGCTGTTACTGTACTAACTGAAGCCAGAAAAAGAACTTAATTTGTCCATGTGGGCAGAACAGGAACT
GAGAAGCCAAAAAAA--GACTACTGTGAGATCAGTCATAACATATTTGTATGGAGCAGTAGCTTTCAAGACTGCTTCTGA
TACTTCATAATTCACAAACTTATGACAGTGTGCTTCAACAAGCAACTCAGGCTCAAAGTTTATAACCCACCCTAACTAAT
TAACACGGCCGATGTGTGAAATGATCCCAAATAACGCCACCACTGTTCTTTCCAAATAGCGTCACATTCT---GCTGTTC
TGAGATCAACAGATTCCATAGTATGATCAAACATGGTAACTAAGGGTGTGTTTGGTTCAAGAACGAAGTGGAACGGAATG
TCATGGTTCATTCCACGGAAATGGGTTGGTTCCGTTCCTATGTTTGGTTATGAGTATTAGAGATGGAATGGAATGGTTAC
GTTCTAGTGTTTGGTTCTGGAGCTCGAATGAAATGATTTTCTGCAACAGCATGAATAGTTACTCTTTGTATCATATCAGC
AACAGAGTAGTCAAGTTGTGAGAAACATTTGAATT
>chr3A_1
CAGGCTTGAAAATCAATTTCCGCTTTTGTAAGACGCATA-CACTGTGAGAATACGGTCCAGTCTGCCTCCCCCCTCCGGA
CTAGATCTGGCTTCCTGGAAGAGACAGCCAGCTTGAGCTCCCCGTTCCGCACTCGCCGCCCACC--AGACCCGGACCAGT
GGCCGCCGCCATTGAGCTCCAGCCGGACCGATCCGCTCTTCAGGTTAGGCCTCGCCCGACTCATCGTTTCTTCTGCTCCT
CCCCAAGATCCACTCTGCTTCTGCTTTTGGTCAGAGGAGCAAGTTATTACTTT---TTTTAGAACGGCTAGAGGAACAAG
CGCGTCGAGAA-TCTCGGCTGTGGCCATCTCCGACG-TGGGCGACGG-----------------CCCGACGACCATGCCC
AAGACAGAGCAACAACCTCTTCCCTCTTGCTCTTGCTCTTGCAGCAAGAAACA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TTTTTCCTCCGTGTCCCTGTCTGGGCCCACACGTCATTTGTTTTAGG
ACGATTTTGCCCTCGGGTTGGTCGTTTCCCCTGGTCTGGTTCGACCCAGCCTTGCGTGCTCGAATGAAACGACCAAACAC
AGGACGTGAAAGACGGCGCCGCCATCTCGCCGTGCTCTGCTTCCTTATCGGCGCACCGCCACCTCGCCGTGTCTCGAGTC
CCGCCGCCTTGAGACCGCGCCCATATTTATTGTCGCTGATAAGTAGTTTTTCATTTTTCTGATATGTTCGACTCTTTTCT
TCTTTGAGAAAACTGTGTACTGGCGAATTTCTGAAAGTACATTCCTCATTTGCATTTCCCTTTTATGTCCGGGACAAATT
A-AAGATTGAAGTACGAATTTCTACTCCCCCACACTGACTGACTGGATGTGGTAATTTATTTTTTGTTGTGTTTTTGAAT
TTACACTTGCAAAACTAAACTAAAATGACACAATATC----TATTTTCAAGTGGTAGCAGTAGCATATCTACTACGGAGA
AGGATTCTTGCTATTTTTCAAGTGTGTCGTACTAAAAGCTCCTGATTGCTTCAGCAAAAA-GAAAAATATGATGACACTA
CTCTGTCCAACAGGTACGTGGTCCGAGACACAGGAAATCTAGATGGGGAGTATCATGAAACTATATTACGAGTGGGAAAT
CCAGGTGCTTGTGCTCCTTAGCTTCATGCTACAAATGTTCCTCTTCTTCGCCGGCAGCCTTCGGCGGCGTGGCATCAACT
CGTTTCTCAGGTTCTTCACTTGGATAGCTTATCTGGGCGCGGACTTAGTGGCAGTTTACACCCTGGGCTACCTCTCGCGC
CATGAGGATGCCACCACCGGACTATCTTTCTTCTGGGCACCATTTCTTCTCATCCATCTTGGTGGGCAGGACACCATTAC
TGCTCTCGCCATGGAGGACAACAAGTTGTGGTTGAGACATTTACTGACTCTGTTTATGCAAGTTGTCCTAGCTTTATATG
TTTTCTGGAAGTCCATTGACAAACACGGCGTGGAGCTTCTAGTTTCGGATGTCTTTGTGTTTGCTGCTGGAATTATCAAG
TATGGAGAAAGGGTATGGTCTCTCAAGTGTGGGAGCTTTGAAACCCTCCAGGGTTCCACTGGACAACAGTACAAGCAACA
GGTGCCGGGAGAGGTTGCCGAGGATCCCTATTCTCACATTGTTTGCGCTGTCCTGCATCGTATGCCACGTGTCTTTCGAA
TCTTTACAGCACGATCAGGTGATAGCGGTAACGTTATCCAACAAACCCCAAGCAATTGGGTGAAGCGGATGAGGCTCGAG
CTTGGCATGATGTACGATGATCTGTATACTAAGTCCTGTGTGCTCAGGACAAGGAGTGGCATCATATTGCGATGCATCTC
TCAGGTGTCTGTTCTGGTTGCCTTGGTGCTCTTCCTCACGAGCGACAAACGGAGGTACAATAGAGCCGACATTGCAATCA
CCTGGTCGCTCTTCGTAGGATGCTTTTTGTTGGAAGTATGTGCCACGTTTATTTTGATAATGTCACCATGGTCCTGGGCG
TGGTTGAAGATGCGAAGGTGCGGCATGCTTGCAAAGTTGTCCTGGTTTCTCCTGTGCAGTGGCATTGGATGGCCAGAGAG
GAAGCCATATCTAAATTCAATTGGGCAATACAACTTCCACAGGTGGTTGGATTCAGGCAGCGACCAGCCAAGGTCATATA
GTCGACGAGCAATGACCACGGTGATCAAAAGCTTGGTGAATTTGGTTGGTGTCAAAGAGGATAAAATGTTGTTCTGGATG
AGCAGGTTGTTAGACACCGAGCACGTGGAGGCAGATAAGGAGACGATGGAGTGTGTTGTCAAGGGAATTACTGACTTCCA
TGCTGAAATCAACAGAGATCCCCGGCAGTGGCCAAAACTTGGCGGCATAGTGCAAGAGCTACAAGACATTCGTGAAGATT
TTGGTGGAAAGGTTGCTTTAGTGCATTTTATCACAGAGGCACACTTGAGGAAATATCCTCTTCATCCTCCTTCGGACATG
GAGACAGACACAGGTACCAGCTGCAGTGTCTTGGTGGAAGTATGCCGGAAACTATCCAACTACATGGCATACCTTTTGGT
TACCCACCCTTCGCTGTTGCCGCTCAATGACAGCGCCTTATATACGCTGGAGAAAATGGCACACTTGTTTCCACATCTTA
TAGATGAGCAGCAGGATTCTGAAGGTTTCTTCAGCATCGAGCCAAGCATGGAAACACTGCAGGAGTTGGTAGACATATGG
ACCAAGCTGCTCATCTATGCGGCCACCAAGTCCCGGCCGGAGCTGCACGCGGCGCACTTGGCCAGAGGAGGGGAGCTTAT
CACCTTCGCCTGGCTGTTCTTGAGCCACAACTTTTTGGGAGATTCCGAGGTGATCAAGGTGCAGCTTACCAATGCCAATC
AAAGAGGGACGATAGCATACGTCTTCGGAAATCCTGCACCAAGATAAGAGCACCAGATCCTACACAAGCCCTGCAGAGTG
CAGACTCCTCTGTTCTTCATTAGATTTGATTTTACTCCTCTTCTGTTTGCGTCTGGCGTATGTCACGACGCAAAACAGTA
CTGAAGTTTATACAGTACCGCAGCTGACATCTAGAGGTATGTGACATTTAATTTTTTGCATTAATGGCATCACTTCAAAA
CTGATGTATTTGAGTGAATAGGCAGTGCAAAAATACCATCCGCTGTATTACT----------------------------
-------------------------------------ACATTCCTTTGTTGTGGTAGCATCATTTATACACTGCAGCTAC
AATTGGGATGCTTAGCTGTTACTGTACTAACTGAAGCCAGAAAAAGAACTTAATCTATCCATGTGGGTAGAACAGGAACT
GAGAAGCCAAAAAAAAAGGCTACTGCGAGGTAAGTCATAACATATTTGTATGGAGCAGTAGCTTTCAAGACTGCTTCTGA
GACTTCATAATTCACAAACTTATGATAGTATGCTTCAACAAGCAATTCAGGCTCAAAGTTTATAACTCACCCTAACTAAT
TAACACGGCT-ATGTGTGAAATGATCCCAAATAGCGCAACTACTGTTCTTTCCAAATAGCGTCACATTCTCTGGCTGTTG
TGAGATCAACAAATTCCATAGTATGATCAAATATGGTAACTAAGAGT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3B_1
CAGGCTTGAAAATCCGTTTCCGCTTTTGCAAGACGCCTTCCACTGTGAGAATACA------------TCCCCCCTCCGGA
CTAGATCTGGCATCCTGGAAGAGACAGCCAGCTTGAGCTCCC-GTTCCGCACTCGC-------------CCCGGACCAGC
GGCCGCCGCCATTGAGCTCCAGCCGGACCGATCCGCTCTTCAGGTTAGGCCTCGCCCGACTCATCATTTTCTCTGCTCCT
CCCCAAGATCCACTCTGCTTCTGCTTTCGGTCAGAGGAGCAAGTTACCTTTTTTCTCTTTAGAACGGGTAGAGGAACAAG
CGCGTCAAGAAATCTC---------------------------------GGCTCTCGTTCCTGGCCCGAAGA--------
-----------------------------CTCTTGTTCTTGCTGCAAGAAATGCATCGCAGGACAGCCTGCTTTTTGCTT
GTTTATTACTTGCCCCTCCCCTCCTACAAGCAGGGAATGCGAGTACTCCCTCCATTTCTTAATACAAGTTTTTTTTAGAG
ATTTCAATATGCACTACATACGTATCTATATAGACGACGACGATACATGAAATTATTAGTATGGAAAACACACATGTGTC
AATTTGGCTCAATTAATAGGAGCATGCTTAACTTTTTTCCTCCTTTTCCAAGTCTGGGCCCACGCGTCATTTCTTTTAGG
ACGATTTTGCCCTCGGGTCGGTCGTTTCCCCTGGTCTGGTTCGACCCAGCCTTGCGTGCTCGAATTAAACGACCAAACAC
CGGAGGTGAAAAACGGCGCTGCCATCTCGCCGTGCTCTGCTTCCTTATGGGCGCG-------------------------
CCGCCGCCTTGAGTCCGTGCCCATATTTGTGGTCGCTGA----TAGTTTTTCATTTTTC------GTTCGATTCTTTTCT
TCTTTGAGAAAACTGTGTATTGCGA---------------ATCCCTAATTTGCATTTCCCTTTTATGTGTTGTATACAAA
TTAAGATTGAAGTACGGATTTCTACTTCCCCACATTGACTGGAA----GTGGTAATTTATTTTTTGTTGTGTTTCTGAAT
TTACACTTGCAAAACTAAA-----ATGACATAATATCTACGTATTTTCAAGTGGTAGCAGTAGCATAT------------
---------------------GTGTGTCATACTAAAAGCTCCTGATTGCTTCAGCAAAAAAGGAAAATATGATGAAACTA
TTCTGTCCAACAGGTACGTGGTCCGAGGCACAGGAAATCTAGATGGGGAGTATCATGAAACTATATTACGAGTGGGAAAT
CCAGGTGCTTGTGCTCCTTAGCTTCATGCTACAGATGTTCCTCTTCTTCGCCGGCAGCCTTCGGCGGCGTAGCGTCAACT
CGTTTCTCAGGTTCTTCACTTGGATAGCTTATCTGGGCGCGGACTTGGTGGCAGTTTACACCCTGGGCTACCTCTCACGC
CATGAGGATGTGACCGCTGGACTATCTTTCTTCTGGGCACCATTTCTTCTCATCCATCTTGGTGGGCAGGACACCATTAC
TGCTCTCGCCATGGAGGACAACAAGTTGTGGTTGAGGCATTTACTGACTCTGTTTATGCAAGTTGTCCTAGCTTTATATG
TTTTCTGGAAGTCCATTCACAAACATGGCGTGGAGCTTCTAGTTTCAGATATCTTTGTGTTTGCTGCTGGAATTATCAAG
TATGGAGAAAGGGTATGGTCTCTCAAGTGTGGGAGCTTTGAAACCCTCGAGGGTTCCACTGGAGAACAGTACAAGCAACA
GGTGCCGAGTGAGGTTGCCGAGGATCCCTATTCTCAAATTGTTTGTGCTGTCCTGCATCGTATGCCACGTGTCTTTCGAA
TCTTTACAGCACGATCAGGTGATAGCGGTAACATTATCCAAGAAGCCCCAAGCAATTGGGTGAAGCGGATGAGGCTCGAG
CTTGGCATGATGTACGATGATCTGTATACTAAGTCCTGTGTCCTCAGAACAAGGAGTGGCATCATATTGCGATGCATCTC
TCAGGTGTCTGTTCTGGTTGCCTTTGTGCTCTTCCTCACGAGCGACAAACGGAGGTACAATAGAGCCGACATTGCAATCA
CCTGGTCGCTCTTCGTAGGATGCTTTTCGTTGGAAGTATGTGCCATGTTTACTTTGATAATGTCACCATGGTCCTGGGCG
TGGTTGAAGATGCGAAGGTGCAGCATGCTTGCAAAGTTGTCCTGGTTTCTCCTGTGCAGTGGCATTGGATGGCCAGAGAG
GAAGCCATATCTAAACTCAATTGGGCAGTACAACTTCCACAGGTGGTTGGATGCAGGCAGCGACCAGCCAAGGTCATACA
GTCGACGAGCAATGACCACAGTGATCAAAAGCTTGGTGAATTTGGTTGGTGTCAAAGAGGATAAAATGTTGTTCTGGATG
AGCAGGTTGTTAGACACCGAGCACGTGGAGGCAGATAAGGAGACGATGGAGTGTGTTGTGAAGGGAATCACCGACTTCGA
TGCTGAAATCAACAGAGATCCCCGGCAGTGGCCAAAACTTGGCGGCATAGTGCAAGAGCTACAAGATATTCGTGAAGATT
TTGGTGGGAAGGTTGCTTTAGTGCATTTTATCACAGAGGCACACCTGAGAAAATATCCTCTTCATCCTCCTTCGGACATG
GAGACAGACACAGGTACCAGCTGCAGTGTCTTGGTGGAAGTATGCCGGAAACTATCCAACTACATGGCATACCTTTTGGT
TACCCACCCTTTGCTGTTGCCGCTTAATGAGAGCGCCTTATATACGCTGGAGAAAATGGCACACTTGTTTCCACATCTTA
TTGATGAGCAGCAGGATTCGGAAGGTTTCTTCAACATCGAGCCAAGCATGGAAACACTGCAGGAATTGGTCGACATATGG
ACGAAGCTGCTCATCTATGCGGCCACCAAGTCCCGGCCAGAGCTGCACGCGGCACACTTGGCCAGAGGAGGGGAGCTTAT
CACCTTCGCCTGGCTGTTCTTGAGCCACAACTTTTTGGGAGATTCCGAGGTGATCAAGGTGCAGCTTACCAATGCCAATC
AAAGAGGGACAATAGCATACGTCTTCGGAAATCCTGCACCAAGATAAGAGCATCAGTTCCAACACAAGCCCTGCAGAGTG
CAAACTCCTCCGTTCTTCATTCGATTTGATTTTACTCCTCTTCTGTTTGCATCTGGCACATCTCCCGTCGTAGAACAGTA
CTGAAGTTTATACAGTATCGCAGCTGACATCTAGAGGTATGTGACATTTTTTTTGCAGT---------------------
----------------AATGAGCAGTGCAGAAATACCAATCGCTGTATTCGTTAATAAAAACTGGTTATGCAGAAACAGT
GTCACTATAGAAAGCACTTCCATTGCTGTCCTCGTCGACATTCCTTTGTTGTGGTAGCATCATTTATACACTGCAGCTAC
AATTGGGATGCTTAGGTGTTGCTGTACTAACTGAAGCCAGAAAAAGAACTTAATCTGTCCATGTGGGCAGTACAGGAACT
GAGAAGCCAAAAAAA--GGCTACTGTGAGATAAGTCATACCATATTTGTATGGAGCAATAGCTTACAAGACTGCTTCTGA
GACTTCATAATTCACACACTTATGACAGTGTGCTTCAACAAGCAATTCAGGCTCAAAGTTTATAACCCAGCCTAACTAAT
TAACACGGCTGATGTGTGAAATGATCCCAAATAACGCA-CCACTGTTCTTTCCAAATAGCGTCACATTCTCTGGCTGTTC
TGAGATCAACAGATTCCATAGTATGATCAAACATGGTAACTAAG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>SNPs
-------------------------S---------------S------S-----------S-------------------
-------------------------------------------S---------S----S-----SS--------------
---------------------------------------------------------------------S----------
-----S--------------------------------------------------------------------S-----
S-----------------------------------S----------SS-------S------S----------------
-----------------------------S--------------S--S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
-----------------S----------S--------------------------------S------------------
--S---SSSSSSS-------------------------------------------------------------------
----------------SS---------S----------------------------------S-----------------
-S-------------S-S----------------------------S------------------S----S---------
----------------------------------------S-------S------------S---SS-----------S-
----S------------------------------------------------S-----------S--S------S----
-------------S--------------------------S---------------------------------------
----------------------S--------S------------------------------------S-----------
---------------------------------------------------S-------------------S--------
-------------------S--------------------------------------------------S---------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-------------------------------------------------------------------------------S
---------------------------------------S----------------------------------------
-----------------------------------------S--------------------------------------
------S--------------------S----------------------------------------------------
----------------S---------------------------------------------------------------
-----------------S-------S------------------S-----------------------------------
S------------S--S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------S------------S----------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S--------------------------------------------S-------------------------
------------------S------------S------------------------------------------------
S--------------------------------------------S----------------------------------
---------S---------------------------S------------------------------------------
--------------------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1312
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GGTACGTGGTTCGAGACACT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_2567
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GATCAACAGAGATCCCCGGC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>forward_1511
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCAGTTTACACCCTGGGCTAT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_3575
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TTGTCCATGTGGGCAGAACA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
