>input_sequence_44867
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATGGCGGA
AGGCAAGAAGGATGCTCCGAAGCTGAACCAGCGGATGGTATCATCTCTCTCGAAGCGAACTGCTGCGGCACATTCTTGGC
ATGATCTGGAGATAGGTAAATACATATATCCTG-------ATGTCTTGCCTTCCATCAAAATTCTTTGCCCCGATCGGGA
TG--AAAAATGTGTTTCTCAAGGTCCATATATAATCTCATGTATAATTTCTCCAAATTCTAGGACCTGAAGCCCCTCTAA
TCTTCAATGCCGTAAGCATCTTGATCGACATACCCTATTGCCTTGGCACGCTGTGTACGTAAATTACAGCAAATAGCTCA
GATGCATCTCATAGTCTTGCATGAATTTAGGTTGTTGAGATCACAAAGGGGAGCAAAGTCAAGTATGAACTTGACAAGAA
GACTGGGATGATAAAGGTACGCAC--ACATTCCCCACTTTCAGCTTGGTGGTGTATGACAAGAAAGCTAAAAAAAGAATC
CTCTTCACAATGGAGAACATGCATGAAAATTAAGCTATTTCTGTAGGTTGACAGGATTCTGTACTCGTCCGTAGTCTACC
CACATAACTACGGTTTCGTACCACGGACGCTGTGTGAAGATGGAGATCCAATTGACGTCTTGGTCCTGATGCAGGTGAGT
TTTGCATTACTGATGTCAAGTTTATGCAACTCACAAGGT------------GTC-------------------CGAGAAT
GTCTTATGAGTTCTGACTAACCTACACCTTCATAGGAACCAGTCATACCTGGTTGCTTTCTTCGAGCTAAGGCTATTGGG
CTTATGCCCATGATTGATCAGGCAAGATAGTTTTTTTTAAGAGTT-CATTTATGAATA-----TGTCAATCTCACATTAT
GTCTGCCTGCTTGATACCGTGATTACTTTTTGGAACAAAAAGGGTGAGAAAGATGATAAGCTCATTGCTGTTTGCGTTGA
TGATCCCGAGTACCGTCATCTCAACGACCTTAAGGAGCTCTCTCCCCACCGCCTTGCTGAAATCCGTCGCTTCTTCGAAG
ATTGTACACTCTGTTTCCTCGCATATTATCGGA-TTTACGCCAACCATAGCGACATAAATGGTTTCCTTAAATGCTT-AG
CTTATTTGATGTTATGCATCTGCAGACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTCTTGCCACCGGAGAC
TGCACAGGCCGCCATTAAGCACTCCATGTGAGTTGTTTCTGAAATAGCTTTACAGGGTTAGCTACCAGCAATTAGTTATG
CAAATGCATTTCAGAGGCATGCCTCC---ACATTATAATGAGATGGAAACTGACACCATCTACAGTTAAAACGTGTTTAT
GTTAGTGT-----------------------------------GTAATGATGTCTACTGAAGC-----TAACATATATTA
CCTGGTTGAAGATAAATTTGTAG-TAAAGCATACTCCCTTTGTTCCAATTATTTGATGTTCTAGCTTTGCACAAAGTCAA
ACTTCTTTAAATTTAACGAAG-------------------------ACAACATCAAATATATATATATATATATATAGTA
CAGTACGAAAATATATTTTATGATGAATCTAATGAATGCCAATTGGTCTTGTATATGCTGATATTATAGACTTCGTCAAG
TTTTTC---TTTTTTGACTTAGAACAAAGTTGCAACTTTAAAATAATTTCGAACAGAGAGAGTACAATATATTATTATTA
ACCATTCTGCCGCTGTTTCAGGGACCTATATGCAGAATATATACTGCAGAGTCTGAAGAACTAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr1D_1_TraesCS1D01G344800
ACTCCGACTACTTCGCCGATGCTCCACTGCACGGCGACAAAACATTTCGGCGCCGTTATCGGATGAGCCGAAAACTCTTC
CTCAGGATTGTGAATTCCATCCGGGAGTTCGACAGCTACTTCAAGTGCAAGATGGATTGCACCGGCAAACTTGGATTCAC
CTTGATCCAGAAGTGCACGACAGCGATGAGAATGCTTGCATACTGAGCTCCCGGTGATTCACTCGACGACTATGGGCGCA
CGGCCGAGTCCACCATCATTGAGTGTTTCTACAAGTTCTTCGGGCAGTGGTTGCAGTGTTTGGACCGCAATACTTGCGAA
CACCCAATGCGGAAGTTCGAGCCGCAAAATGAGCAAATACGTTAAATCCGCCGAAAATATCCGAGCCATCTGCTATAGCG
GATCTGCTAAAGCTGCTCTTAGTTGGGAGTATAAGAATCCCACCGCCGAGCACCGTGGGACAAAAAAGCTTATTGACCAG
GAGCCTAATAACAAACCAAGTGGCTACGTGCACCCA------------GCCAGATCCCAGACCACTTAACGGTCAGCTCC
TCATTGGCCAGATCTACCCTGAAAAAAAGAACTCTAAAAAACAGCAAAGAAAAATCCTAGCTATATATAGTAGCATTACT
G------TCTAATTCGGGAGCGCATGCAGGAGGTGTCCGAGCTGCCGCTTCTCCCGCCACTTCTCCAGGATCT-CCAACC
CACCTAGAGCTCTATATAA----GCAACAACTGTTCCTGTGCTTCATCTGTTCTTCTCCTGGTCATTTATATCCGTCATC
CGACTCGATCCTTATCGAAATTTGGTATGTACCCAAACACG--GCTCCTTCTCCTCGGATATCAATTTGCATTTTT-GTT
TGGTCTGAAGAAGAAGAGGGGGTTTCTTGTTGCCCAGAAATTGCAGTACCACGAGTACCTTTACTTTTTTTTCTTTCTCT
ATCTATTGGTTGTTCATTTGGAAGGAAATTCATGAGGATTTCCTTGGGTGGTGGG------ATTGTAGGACAATGGCGGA
AGGCAAGAAGGATGCTCCGAAGCTGAACCAGCGGATGGTATCATCTCTCTCGAAGCGAACTGCTGCGGCACATTCTTGGC
ATGATCTGGAGATAGGTAAATACATATATCCTG-------ATGTCTTGCCTTCCATCAAAATTCTTTGCCCCGATCGGGA
TG--AAAAATGTGTTTCTCAAGGTCCATATATAATCTCATGTATAATTTCTCCAAATTCTAGGACCTGAAGCCCCTCTAA
TCTTCAATGCCGTAAGCATCTTGATCGACATACCCTATTGCCTTGGCACGCTGTGTACGTAAATTACAGCAAATAGCTCA
GATGCATCTCATAGTCTTGCATGAATTTAGGTTGTTGAGATCACAAAGGGGAGCAAAGTCAAGTATGAACTTGACAAGAA
GACTGGGATGATAAAGGTACGCAC--ACATTCCCCACTTTCAGCTTGGTGGTGTATGACAAGAAAGCTAAAAAAAGAATC
CTCTTCACAATGGAGAACATGCATGAAAATTAAGCTATTTCTGTAGGTTGACAGGATTCTGTACTCGTCCGTAGTCTACC
CACATAACTACGGTTTCGTACCACGGACGCTGTGTGAAGATGGAGATCCAATTGACGTCTTGGTCCTGATGCAGGTGAGT
TTTGCATTACTGATGTCAAGTTTATGCAACTCACAAGGT------------GTC-------------------CGAGAAT
GTCTTATGAGTTCTGACTAACCTACACCTTCATAGGAACCAGTCATACCTGGTTGCTTTCTTCGAGCTAAGGCTATTGGG
CTTATGCCCATGATTGATCAGGCAAGATAGTTTTTTTTAAGAGTT-CATTTATGAATA-----TGTCAATCTCACATTAT
GTCTGCCTGCTTGATACCGTGATTACTTTTTGGAACAAAAAGGGTGAGAAAGATGATAAGCTCATTGCTGTTTGCGTTGA
TGATCCCGAGTACCGTCATCTCAACGACCTTAAGGAGCTCTCTCCCCACCGCCTTGCTGAAATCCGTCGCTTCTTCGAAG
ATTGTACACTCTGTTTCCTCGCATATTATCGGA-TTTACGCCAACCATAGCGACATAAATGGTTTCCTTAAATGCTT-AG
CTTATTTGATGTTATGCATCTGCAGACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAACGACTTCTTGCCACCGGAGAC
TGCACAGGCCGCCATTAAGCACTCCATGTGAGTTGTTTCTGAAATAGCTTTACAGGGTTAGCTACCAGCAATTAGTTATG
CAAATGCATTTCAGAGGCATGCCTCC---ACATTATAATGAGATGGAAACTGACACCATCTACAGTTAAAACGTGTTTAT
GTTAGTGT-----------------------------------GTAATGATGTCTACTGAAGC-----TAACATATATTA
CCTGGTTGAAGATAAATTTGTAG-TAAAGCATACTCCCTTTGTTCCAATTATTTGATGTTCTAGCTTTGCACAAAGTCAA
ACTTCTTTAAATTTAACGAAG-------------------------ACAACATCAAATATATATATATATATATATAGTA
CAGTACGAAAATATATTTTATGATGAATCTAATGAATGCCAATTGGTCTTGTATATGCTGATATTATAGACTTCGTCAAG
TTTTTC---TTTTTTGACTTAGAACAAAGTTGCAACTTTAAAATAATTTCGAACAGAGAGAGTACAATATATTATTATTA
ACCATTCTGCCGCTGTTTCAGGGACCTATATGCAGAATATATACTGCAGAGTCTGAAGAACTAATCGTGGTAGCAAACTT
GCAAGGCTGCAGAAACCACCCACATGGTCTCGTAAGAGGACAATAATCGACTACATGGCTTTTATTTAAGGGCCCATTTT
TTCTATATATTTAAATAATGGGA-AATGCTATTCCCATACGTATTTTTCTGCAGAACATTGTAATCAAGGACTAATGTTA
TACTTGTGCATAGTGTTTCATAATATTTGAATCAACACTTGAAACATTTAGTCTTGCCCTGTTGGCCTGAATTTCAAAAT
AATTATTTGGAAAAGACGATTACCAATCTTAAAGCAAAGTAGTTAACACCTTTGTGTGTGTATGACTTTGAAGTGCATGG
TGTGTGCTCCGGCGGAGCGTGGACTTTATTCA----TATGTACATGTGAGTACCATCCGCGTCCCGGAGCTGCTAGTTAT
CGGCATCGTCACAAGTGTTATTAAAATTTCAAAGAAGCGTGATTGTTGAGATTAATATACATGCATAAGAGCAACTCCAG
CAGGGTCGCGATATCATATCGGGCCAACTGGCATAATAACCGCCGAAAGGCCACTCTAGCTAGCAGAGACGCCATCCTAC
CACGGGTCACCATAATTCATGGAGAGCATCCATAGTCAGTTCGCAAGCGTCCATATTTAGAGGATAGGAGATGTTGGTTT
GGAGAGTGCGCCATCTACCAACGGCTTACGTGAGAGGGAGGTTTCAACTCCCTTGTCAGACTCCTGCAAGGCATATCTCC
TCTTCCAGCCAATGGCGCAGATGGCCATGGCATTGGGAAGCGTGTTAGCTAATAGCATCCGGCGCGTGCCAACTTCCCGC
CGCCATATTTTTCGGTCACCCGTTGCTACAAATTTTTATTTTTTTTGGAAAAGGGGTGATTTCCCGGCCTCTGCATCAGG
TGGATGCATACGGCCACTTAGATAAATAAAATAGGTTCCACAATGTCGAAAAAGTCGTAAAAGAAAACTACGTCGAGCTC
ACATAGACCTCGACACGAAAATACAAAAA
>chr1B_335
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GTTCGAGCTGCAAAACAAGCAAATACGCTAAATTCGTCGAAAATATCCGAGCCGGTGGCTATAGCG
CATCTGCTAGAGTTGCTCTTAGTTGGGAATATAAGAATCCCACCGCCCAGCACCATCGAACAAAAATGCTTGTTGACCAG
GAGCCTAATAACAAACCAAGTCGCTACGTGCACCCACTCGTGTACCCAGCCAGATCCCAGACTAATTAACGG-CAGCTCC
TCATTGGCCAGATTAC-CCTG-AAAAAAAAACTCTAAAAAACAGCAAAAGAAAATCCTAGCTATATATAGTAGCATTACT
G------TCTAATTCGGGAGCGCATGCAGGAGGTGTCCGAGCTGCCGCTTCTCCCGCCACTTCTCCAGGATAT-CCAACC
CACCTAGAGCTCTATATAATTAAGCAACAACCGTTTCTGTGCTTCAAGTGTTCTTCTCCTGGTCATTCATATCCGCCATC
CGACTCAATTCTTATCGAAATTTGGTAAATGCCCAAACG--CCGCTCCTTCTCCTCAGATATCAATTTACAATTTT-GTT
CGGTGTGAAGAAGAAGAGGGGGTTTCTTGTTGCCCAGAAATTGCAGTACCACGAGTACCTTTACTTTTTTTTCTTTCTCC
----ATTGGTTGTTCATTTGGAAGGAAATTCATGATGATTTCCTTGGCTGGGCATCGGGGAATTGTAGGACAATGGCCGA
AGGCAAGAAGGACAATCCGAAGCTGAACCAGCGGGTCGTATCATCTCTCTCGAAGCGAACTGTGGCGGCACATTCTTGGC
ATGATCTCGAGATAGGTAAATACATACACATATCCTAATAATGTCTCGCCTTCCATCAAAATTGTTTTCCCCCGATCAGT
GTGAAAAAGTATATTTCTGAACGCTCGTATATAATCTGATGTATGAAATCTCCAAATTCTAGGACCTGAAGCCCCTCAAA
TCTTCAATGTTGTAAGCATCTT----GACATACTCTATTGCCTTGGCACGATGTGTAAATTATACGTAGCAAATAGTTCA
GAC--GCATCATTGTCTTGCACGCATTTAGGTTGTTGAGATCACAAAGGGGAGCAAAGTCAAGTATGAACTTGACAAGAA
GACTGGGATGATAAAGGTACACAC--ACATTCCCCACTTTCAGCTTGGCAGTGTATGGCAAGAAAGCTTAAGAAAT--TT
CTTTTCACAATGGAGA----GCATTAAAATTAAACTGTTTCTCTAGGTTGACAGGATTTTGTACTCGTCCGTAGTCTACC
CACACAACTACGGTTTCGTACCACGGACGCTGTGTGAAGATGGGGATCCACTCGACGTCTTGGTCCTGATGCAGGTGAGT
TTTGCACTACTGATGTCAAGTTTATTCCACTCACAAGGTGATGCACATTGTGTC-------------------CGAGAAT
GTTTTACGAGTTCTGACTAACCTACACCTTGATAGGAACCCGTCATTCCTGGTTGCTTTCTTCGAGCTAAGGCTATTGGG
CTTATGCCCATGATTGATCAGGCAAGATAGTTTTTTTTAAGAGTTTCATTTATGAATA-----TATCAATCTCACATTAT
GTCTGCCTG----ATACCGTGATTACTTTTTGGAACAAAAAGGGTGAGAAAGATGATAAGATCATTGCAGTCTGCGTTGA
TGATCCCGAGTACCGTCATTTCAATGACCTTAAGGAGCTCTCTCCCCACCGCCTTGCTGAAATCCGTCGCTTCTTCGAAG
ATTGTACACTCAGTTTCCTCACATATTATCGGATTTTACGTCAACCATAGCGACATAAATGGTTTCCTTAAGTGCTTAAG
TTTATTTGCTGTTATGCATCTGCAGACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTCTTGCCATCGAACAC
TGCACAGGTTGCCGTTCAGCACTCAATGTGAGTTGTTTCTGAAATAGCTTTACAGGGTTATCTATCAACAATTAGTTATG
CATATGCATTTCAGAGGCATGCCTCCTCCACACTATAATGAGATGCAAACTGACACCATCTACAGTTAAAACATGTTTAT
GTTACTAC-----------------------------------ATAAGGATGTCTACTGAAGCTAATTTAACATACATTA
CCTGATTTAAGATAGATTTGTAGTTAAAGCATACTCACTTTGTTTAAATTATTTGATGTTCTAGCTTTGCACAAAGTCAA
ACTTCTTTACATTTAACGAAGTGTATAAGAAAATATGCTA---TCTTCAAGATCAAACATATAT------------AGTA
CAGTACAAAAATATATTTTATGATGAATCTAATGAATG-------GTGTTGTATATTTTGATATTACAGACTTCGTCAAG
CTCTTTCTTTCTTTTGACTTAGAACAAAGTTGCAACTTTAAAATAATTTCGAACAGAGAGAGTACAATATATTATTATTG
ACCATTCTGCCGCTGTTTCAGGGACCTATACGCAGAATATATCCTGCAGAGTCTGAAGAACTAATCTTAGTTGCAAACTT
GCAAGGCTGCAGAAACCACCCACGTGGTCTCGTAAGAGAACAATAATCGACTACATGGCTTTTATTTAAGGCCCATTTTT
CCCTATATATTTAAATAATGGAACAATGCTATTCCCATACATATTTTTCTGCAGAACATTGTAATCAAGGACTGATGTTA
TACTTGTGCATAGTGTTTCATAATATTTGAATCAACACTTGAAACATTTAGTCTTGCCCTGTTGGCCTGAATTTCAAAAT
AATTATTTGGAAAAGGCGATTACCAATCTTAAAGCAAAGCAGTTAGCACCTTTGTGTGTGTATGACTTTGAAGTGCATGG
TGTGTGCTCCGG---AGCATGTACTTTATTCATATGTATGTACATGTGAGTACC-TCCGAGTCCCGGAGCTGATAGTTAT
CGGCATCGTCACAAGTGCTGTTAAAATTTCAAACAAGTGTGATTGTTGAGATTAATATACATGCATAAGACCAACTCCAG
CAGGGTCGCCATACCATATCGGGCCAATTGGCATAATAACCTCCGAAAAGGCCACT---CTAGCAGGTACGCCATCC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TCTTCCAGCCAATGGCGCAGATGGCCATGGCATTGGGAAGCGTGTTAGCTAATAGCATCCGCCTCGTGCCAACTTCCCGC
AGCCA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr1A_337
TCGGGCCCC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AAACATGCAAATACGTTAAATCCGCCGAAAATATCCGGACTGGGCCCACCG---
--------------------------------------CCCACCGCCCAACACCGCCGGACAAAAATGCTTGTTGGCCAG
GAGCCAAATAACAAACCAAGTCGCTATGTGCACCCACTCATGTACCCAGCCAGATGGCAGACGAATTAACGGTCAGCTTC
TCATTGGCCAGATTTAGCCTG-TAAAAAAAACTCTAAAAAACAACAAAAATGAATCCTAGCTATATATAGTATATGTAGT
ATTACGTTCTAATTCGGGAGCGCATGCAGAAGGTGTCCGAGCCGCCGCTTCTCCCGCCACTTCTCCAGGATCTCCCAACC
CACCTAGAGCTCTATATAA----GCAACGACCGTTCCTGCGCTTCACGTGCTCTTCTCCCAGTCATTCATATCCGCCATC
CTTCTCAATTCTTATCGAAATTCGGTAAATTCCCAAACACCCCGCTCCTTCTCC-CGGATATCATTTTACATCTTCCGTT
TGGTGTGAACAAAAAGAGGGGGTTACTTTTTTTTTCC--------------------------------------TCTCC
----ATTAGTTGTTCATTTGGAAGGAAATTCATG------------GGTGGTGGG------ATCGTAGGACAATGGCGGA
AGGCAAGAAGGATTCTCCGAAGCTGAACCAGCGGATGGTATCATCTCTCTCGAAGCGAACTGCCGCGGCACATTCTTGGC
ATGATCTGGAGATAGGTAAATGCACATCC---------TAGTGTCTTGCCTCCCATCAAAATTCTTTGCCCCGATCGGGA
TTC--AAAGTGTATTTCTGAAGGTTCATATATAATCTCATGTATAATTTCTCCAAATTCTAGGACCTGAAGCCCCTCTGA
TCTTCAACGCCGTAAGCATCTT----GACATACTCTATTGCCTTGGCACGCTGTGTA----AATTACAGCAAATAGCTCA
GATATGCATCATAGTCTTGCATGAATTTAGGTTGTTGAGATCACAAAGGGGAGCAAAGTCAAGTATGAACTTGACAAGAA
GACTGGGATGATAAAGGTACGCGCATACATTCCTCACTTTCAGCTTGGTGGTGTATGACAAGAAAGCTAAAAAACAAAAC
TTCTTCACAGTGGAGA----ACATGAAAATTAAGCTATTTCTGTAGGTTGACAGGATTCTGTACTCGTCCGTAGTCTATC
CACATAACTACGGTTTCGTACCACGGACGCTGTGTGAAGATGGAGATCCAATTGACGTCTTGGTCCTGATGCAGGTGAGT
TTTGCATTACTGATTTCAAGTTTATGCAACTCACAAGGT------------GATGCACATTGTGTCCGAGAATCGAGAAT
GTCTTATGTGTTCTGACTAACCTACACCTTCACAGGAACCAGTCATACCTGGTTGCTTTCTTCGAGCTAAGGCTATTGGG
CTGATGCCCATGATTGATCAGGCAAGACAG-TTTTTTTAAGAGTTTCATTTATGAATAGAGTATATCAATCTCACATTAT
GTCT----GCTTGATACCGTGATTACTTTTTGGAACAAAAAGGGTGAGAAAGATGATAAGCTCATTGCTGTTTGCGTTGA
TGATCCCGAGTACCGTCATCTCAACGACCTTAAGGAGCTCTCTCCCCACCGCCTTGCTGAAATCCGTCGCTTCTTCGAAG
ATTGTACATTCTGTTTCCTCACATATTATCGGA-TTTACGCCAACCATAGCGACATAAATGGTTTCCTTAAATGCTT-AG
TTTATTTGATGTTATGCTTCTGCAGACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAACGACTTCTTGCCACCGGAGAC
TGCACAGGCTGCCATTAAGCACTCGATGTGAGTTGTTTCTGAAATAGCTTTACAGGGTTATCTATCAGCAATTAGTAATG
CAAACGCATTTCAGAGGCATGCCT---CCACATTATAATGAGACGGAAACTGACACCATCTACAGTTTAAACGTGTTTAT
GTTCCCCGCAAAAAAATAAATAAACGTGTTTATGTTAGTATATATAAGGATGTCTACAGAAGCTAATTTAACATACATTA
CCTGATTGAAGACAAATTTGTAGTTAAAGCATACTCCCTTTGTTCCAATTATTTGATGCTCTAGCTTTGCACAAAGTCAA
ACTTCTAAACATTTAACGAAGTGTATAAGAAAATATGCTAATATCTACAACATCAAATATATAT------------AGTA
CAATATAAAAATATATTTTATGATGAATCTAATGAATGCAAATTGGTATAGTATATGTTGATATTATAGACTTCGTCAAG
CTTA---TTTTTTTTGACTTAGAACAAAGTTGCAACTTTAAAATAACTTCGAACAGAGAGAGTACAATATATTATTATTA
ACCATTGTGCCGCTGTTTCAGGGACCTATACGCAGAATATATCCTGCAGAGTCTGAGGAACTAATCATAGTTGCAAACTC
GCAAGGCTGCAGAAACCACCAACATGGTCTCGTAAAAGGACAATAATCGACTGCGTGGATTTTATTTAAAGACCCATTTT
TTCTATATATTTAAATAATGGGACAATGCTATTCCCATACATATTTTTCTGCAGAACATTGTAATCAAGGACTAATGTTA
TACTTGTGTATAGTGTTTCATAATATTTGAATCAACACTTGGAACATTTAGTCTTGCCCTGTTGGCCTGAATTTCAAAAT
AATTATTTGGAAAAGACGATTGCCAGTCTTGAAGCAAAGTAGTTAACACCTTTGTGTGTGTATGACTTTGAAGTGCATGG
TGTGTGCTCCGG---AGCGTGAACTTTATGTA-------GTACATGTGAGTACCATCCGAGTCCCGGAGCTGCAGT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>SNPs
S-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--------S------SS------------------------------------SSSS---------
S--------S--S---------------S------------------S--------S---------S----S--------
---------------------S----------------------------------------S-S---------------
-------------S--S----S------S-------------------S-------------------------------
--------------------------------------------------------------------------------
-------------------------------S--------------SS-------------------S-------S----
------S--S-----------------SS-S---------S---------------------------S-----------
----S--------------------------------------------------------------------------S
SSSS-------------------------------S--------------------------------------------
-------------S-------------------------------------------------S----------------
----------------------------SSSSS-----------------------------------------------
-S------S---S-----S-----S-------------------------------------------------------
----------------------SSSS-------S-----------------------SS-S-------------------
---SSSSS------------------------------------------------------------------------
---------------------------------------------------------------------------S----
----------------SSSS------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
S-------------------------------------------------------------------------------
---------S--------------S-----------------------------------S---S---------------
--------------------------------------------------------------------------------
----S-SS-----------------------------------S---S---------------------------S----
----S---------------------------------------------------------------------------
---------S------------------------------------------------------SSSSSSSSSSSS----
------S--------------------------------S-------S---------S----------------------
S----S--------------------------------------------------------------------------
------------------------------S-----------S-----------------------S-S--S--------
-----------------------------------------------------------------------S--------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------SSS------S-------------------------------------S--------------------
-----------------S-S-------------S---S--------------------------------S---------
---------S---S-------------S-------------S------S-S-SSSSSSS-------SS---------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-------------------------------------------------------------S-S----------------
S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_50
------------------------------ACGGCGACAAAACATTTCGG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_1149
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCCTGATGTCTTGCCTTCCA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>forward_306
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GTGGTTGCAGTGTTTGGACC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_2250
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGCCATTAAGCACTCCATGTG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>forward_574
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AGCTCC
TCATTGGCCAGATC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_2301
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GCTACCAGCAATTAGTTATG
CAA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>forward_1341
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CTTGGCACGCTGTGTACGTA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_3415
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TCTAGCTAGCAGAGACGCCA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
