>input_sequence_44840
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----ATGGCGGAGCGCAAGGAGGAGTCGGTGATGGACAAGATCACGGAGAAGTTCCACGGGGGGTCCTCCTCCTCGTCGT
CGTCCGACGACGAGG---GGAGGTCGGGGTCCTCGTCGTCCGTCAAGGCCAAGATCTACCGCCTCTTCGGCCGCGAGAAG
CCCGTCCACTCCGTCCTCGGCGGCGGCAAGCGTGAGTCCCC-CCCAACACCCGGAACCCTAAACCCT---------CCCG
CGCCTCGCTTCCGCCGCGT----GGTTTCGTAGATCCGGCGGCCGCATCGGCGTCTCGCGCTCCCGCGGGGCTTGCCCGC
GTGCCCAACGGCTCGTCTCCGTGGTTGTGTAGGGAGGAAATCTGCGGTTGCTCTGGTCTCCGTGGAAAATTGATCTCGTG
TCCGTCGAGACACGTCTCGCTGATTACTAGTGTGTGTGTGTGTGTAGGAAGCGTCCCGATCTGCGATTTTCCGGGCCCAG
TTTCCGCGGCATTGCCCGTCCGCAGGGTGTGAACAGGGCAGCATGCATCAGATTAATACTATTTGTACCGGCAGCTTCTT
GTGTTCCTGGGTTGGGTTGAAGTGATTGTGCGATGCTGCTG-CTTTGCAGAGGAAGCAGC---CGAAACTAGTGCTGCAT
CCTAGTAGTACTAGCTTAAACCCTGGGATGCTTTGTTTGTTTTCTAGGAGTAGATAGATTGCTTGTTGGTCTGGGCATCT
GATGTGCTGTGCTTATGTGTTGTTATGCTTGCAGCTGCCGACCTCTTCCTGTGGAGGAACAAGAAGATCTCTGGCGGGGT
GCTCGCCGGCGCCACCGCCATCTGGCTGCTGTTTGAGGTCCTGGAGTACCACCTCCTCACCCTCCTCTGCCACGGCTTCA
TCCTCACCCTGGGCATCCTCTTCCTCTGGTCCAACGCCTCTGCCTTCGTCAACAAGTGAGCTTCATCAAATTTCCCTTGT
TATTTGCACCCAGATCAGTTGTACTCCTAG-ATGGCAATGCCTAGT-----TGGAACAACGCTGTGTGATCACAATGATC
ATAACAGTTTTAGCAATGGCTCTAGTTTTTGGTTGTAAACAACTGTCTGCAACTACAATGATCCTAACACATAGTTTTAG
CAATGGGTCTAGTTTGTGGTTGTAAACAACTGCCTGCAATTGTGTTCCAGGTGCCCTCCCAACATTCCAGAGGTGAAGAT
CCCTGAGGACCTGGCTGTCAATGTTGCCCGCTCGCTGCGATACGAGATCAACAGGGGCTTTGCTAGCCTGAGGGCGATTG
GTCAAGGCCGTGACCTGAAGAAATTCTTGATTGTACGTTGATTGGTTGTGTGATTTTGTTTCCTTTAGCCTTCACTGCTG
AAACCATGTTTATGTGATCAGTCGCT--TATTGTGTCGTCTCTTTGTTCTCAGGTGGTTGCAGGCCTGTGGATCCTCTCT
TTTCTTGGCAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGGTATATGTGGTTTCTTGCTACAGTTC----GTTACTT
ACATATGTGCAATAAGCTTGCCTAGCATTGTTTCACTGATCATGCCTTCTTGTTTGCAGTCTTCATGGTGCTTTACACCG
TGCCTGTTCTGTACGAGAAGTATGAGGACAAGATCGATGCTTTTGGAGAGAAGGCCATGGTTGAGCTGAAGAAGTACTAC
GCCATCTTCGATGAGAAGTGCCTGTCCAAGATTCCCAAGGGCCCGTCCAAGGATAAGAAGCAGCATTAG-----------
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>chr1A_1_TraesCS1A01G346800
TAGAGAATTCTAATATGCAGAGTAAAAAGGACCGGAGGGAGTACATCCAGAACAATTTATATATGCCCTCAGTTGTTAGT
TCCACCATGTGAAAGCACGGAATCACGATGCTTAGAAACAAACAATCCTGCGAATTTCCCCAACCCATCAGGGTTCAAAT
TCTGGTGCTCGCATTATTCTTGGATTTATTTCAGAATTTCCGGCGATGCGCTTTCAGTGGGAGGAGATGTTCCCGCCGAC
GACGAAGCGCCTACGGTGACTTCGTAAATCTCAAGATGATATGCCGGCTCAGTCTGTCGGAGGTGCTCATAGGGGTAGAG
TATGCATGTGTGCGTTTACAGGGATGAGTGTATGCGCGTGTATATGAGCGCTTGTGTTTGTACCGATGCTAAAAAAAACA
ATCCTGACGTGCTACCCACGACGCTGAACATGAACCGCCCGAAAAGCTCGCGCAAGGAATTCTCCGGAGAAAATTTCAAA
AGGCTTTCGCTTGCGGCAACTGTGCACTCCAGCCCATCAAAAAGACGGGACCGGACCGAGCCGGCG---TCCATCCAGAA
GGTTCCGGCCTATGCGAGCCGCGA-CCCGTCCCCGCCGACGGATGCCAGGGCCCCGCCACGCGTCGCCCGCACACCATCA
CCCGCCCGT-TCCCTCCTCGCGATCTCCACCCATCCGTCCCATTCATTATT---------------ACCTGCGTGGGCCC
CACGGCAGGAATGACTCCCCCCTCCATCCCTGTCGCGGCCGCTGCTGCCGAACAGCACACGGCCCGTGCACCCCCCGCG-
-C----------CCACTGTCCGGTAGGCCCCACGC---------------------------------------------
-GCGGGCGATCTCGCGGAGCCGTCCGCGGCGAGATGGACGGCC-GGGGGCGCGTCACGCGGGGTCACAAAACACGCGGCC
CCGAAGCACGGGAAAGGAAAGGGGAGAGGGATCGAGATT---CCAGCGGCGACGGC--------AGGCAGAAAAGGCGTT
GCCGAACAGAAGCGTCGCGTTGGG----------------------------------CGGGCGAGCGAGCGAGCCAAGC
ATCCATGGCGGAGCGCAAGGAGGAGTCGGTGATGGACAAGATCACGGAGAAGTTCCACGGGGGGTCCTCCTCCTCGTCGT
CGTCCGACGACGAGG---GGAGGTCGGGGTCCTCGTCGTCCGTCAAGGCCAAGATCTACCGCCTCTTCGGCCGCGAGAAG
CCCGTCCACTCCGTCCTCGGCGGCGGCAAGCGTGAGTCCCC-CCCAACACCCGGAACCCTAAACCCT---------CCCG
CGCCTCGCTTCCGCCGCGT----GGTTTCGTAGATCCGGCGGCCGCATCGGCGTCTCGCGCTCCCGCGGGGCTTGCCCGC
GTGCCCAACGGCTCGTCTCCGTGGTTGTGTAGGGAGGAAATCTGCGGTTGCTCTGGTCTCCGTGGAAAATTGATCTCGTG
TCCGTCGAGACACGTCTCGCTGATTACTAGTGTGTGTGTGTGTGTAGGAAGCGTCCCGATCTGCGATTTTCCGGGCCCAG
TTTCCGCGGCATTGCCCGTCCGCAGGGTGTGAACAGGGCAGCATGCATCAGATTAATACTATTTGTACCGGCAGCTTCTT
GTGTTCCTGGGTTGGGTTGAAGTGATTGTGCGATGCTGCTG-CTTTGCAGAGGAAGCAGC---CGAAACTAGTGCTGCAT
CCTAGTAGTACTAGCTTAAACCCTGGGATGCTTTGTTTGTTTTCTAGGAGTAGATAGATTGCTTGTTGGTCTGGGCATCT
GATGTGCTGTGCTTATGTGTTGTTATGCTTGCAGCTGCCGACCTCTTCCTGTGGAGGAACAAGAAGATCTCTGGCGGGGT
GCTCGCCGGCGCCACCGCCATCTGGCTGCTGTTTGAGGTCCTGGAGTACCACCTCCTCACCCTCCTCTGCCACGGCTTCA
TCCTCACCCTGGGCATCCTCTTCCTCTGGTCCAACGCCTCTGCCTTCGTCAACAAGTGAGCTTCATCAAATTTCCCTTGT
TATTTGCACCCAGATCAGTTGTACTCCTAG-ATGGCAATGCCTAGT-----TGGAACAACGCTGTGTGATCACAATGATC
ATAACAGTTTTAGCAATGGCTCTAGTTTTTGGTTGTAAACAACTGTCTGCAACTACAATGATCCTAACACATAGTTTTAG
CAATGGGTCTAGTTTGTGGTTGTAAACAACTGCCTGCAATTGTGTTCCAGGTGCCCTCCCAACATTCCAGAGGTGAAGAT
CCCTGAGGACCTGGCTGTCAATGTTGCCCGCTCGCTGCGATACGAGATCAACAGGGGCTTTGCTAGCCTGAGGGCGATTG
GTCAAGGCCGTGACCTGAAGAAATTCTTGATTGTACGTTGATTGGTTGTGTGATTTTGTTTCCTTTAGCCTTCACTGCTG
AAACCATGTTTATGTGATCAGTCGCT--TATTGTGTCGTCTCTTTGTTCTCAGGTGGTTGCAGGCCTGTGGATCCTCTCT
TTTCTTGGCAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGGTATATGTGGTTTCTTGCTACAGTTC----GTTACTT
ACATATGTGCAATAAGCTTGCCTAGCATTGTTTCACTGATCATGCCTTCTTGTTTGCAGTCTTCATGGTGCTTTACACCG
TGCCTGTTCTGTACGAGAAGTATGAGGACAAGATCGATGCTTTTGGAGAGAAGGCCATGGTTGAGCTGAAGAAGTACTAC
GCCATCTTCGATGAGAAGTGCCTGTCCAAGATTCCCAAGGGCCCGTCCAAGGATAAGAAGCAGCATTAGAACGGTAGAGA
GTACCCTGCGCAGATTTATCTTCAAAGTTGATCACTACTCGTCGGTTTTCAAGGATGGTTGTGATTCCATGTCCGTAGTT
GATAGTAGATACCACTATCTTGTCAAAAACCTCTGGCACGGTCAGTAGTCGTGACGTGCAACTTCTACGAACTTAAAAAG
TCATGCCAGCTTTTGCTGAATATCCTCTTTCCAATGCTATGGTTAACGTAGCATCCTCACTTGCAAGTT-GTGTTGGTGT
AATATGGCAGTGATGTTTGTGACCTTAGTAGACTTGCTACAATGAATGAAGTGGCTCTTTTTGG-TGTTATGTCATTCCT
GGGGTTCATATCCACAATGAAGTGGCTCTTTTGGGTGTTGTGTCATTCGTGGGGTTTATATC--------GTTTGTTGGT
GTTGATATGCCTATGCATTCGTGAGGCTTCAGTTGATTCGGATGAATGTTTTGTCTATCATGTTTGTGTGCTGAAGCGTC
TAGTTAAATTTGTTGGAACACTT-GTGACCTGTGTATGTATAAACCACCTTGAATTTCAACGCTTTCTCATGGGTATTGA
GCCTGTGATGGAGAAG----TACAGCATTAACATCTTGGAAATTAC----------------------------------
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---------------AAGAAATCAAGATGGTATTAACAAAGACTCGCTAAAACATGAGAAATATATAAAATCATTTGGGC
ATATGAGCACTCCATCGAAGTGAATCCTGGAACGTGTGTTTCTATTGTTATCTAGACATATTTGGTTCGACCAAGTGTGT
GATTTAACCAATACTGGCGAGTCTTCTTTCAGTGACATGCATTTTGCTTCTTGCGGCAATATATTTGTTTCAACCACTGC
TAATATTAGCTTCACTGTTTCTTTCTTACGTTTCCATGTACAGACATTTTCCCCACCCAATTCAGGGGCACGTTTTCATT
TCCAACACAATGCTTAGTTAACTCAATGCATAGTGTTGAGTGTGTTGGACCAGACATCACTTCTTATCAGAGGCTACCTC
GTTGACGAAGAAC
>chr1B_396
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---------------------------------------------------------------------------AAACG
ATCTTGACGTGCTGCTCACGACGCTGAAC------CGCCCGAAAAACTCGCAAAAAGAATTATCCGGACAAAATTTC-AA
AGACTTTCGTTTTCGGCAACTGTGCCCTCCGGCCCATAAAAATGACGGGACCGAACCGAGCCGGCG---TCCATCCAGAA
GGTTCCAGCCTGCACGAGCCGCGACCCCGTCCCCGCCGACGGATGCCAGGGCCCCGCCACGCGTCGCCCACACACCATCG
GCTC--CCCATCCCTCCTCGCGATCTCCACCCGTCCGTCCCATTCATTATCATCACCCCGGCCCCCACCTGCGTGGGCCC
CACGGCAGGAATGACTCCT-CCACCATCCCTGTCGCGGCCGTTGCTGCCGAGAAGTACTCGCCCCGTGCACCCACCCCG-
-TCTCCCCACACTCACTGCCCGGTAGGCCCCACGCCCCCGACTCCCGGGGCCGGACCCACGCGAGCAGGAGGCGGCCCCG
CGCGGGCGTTTTCCCTGAGCCGTCCGTGCCGAGATGGACGGCTGGGGGGCGCGTCACGCGGGG-CACAAAACACGCGGCC
CCGAAGCACGGGAAAGGAAAGGAGAGAGGGATTGAGATT---CCAGCGGCGACGGCAGGCAGGCAGGCAGAAAAGGCGTT
GCCAAACAGAAGCGTCGCGTTGGGGAGAGAGGGGGAGC----------------------GGCGGGCGAGCGAGCGAAGC
ATCCATGGCGGAGCACAAGGAGGAGTCGGTGATGGACAAGATCACGGAGAAGTTCCACGGCGGGTCCTCGTCCTCCTCGT
CGTCCGACGACGACGAGAGGAAGTCGGGGTCGTCGTCGTCCGTCAAGGCCAAGATCTACCGCCTCTTCGGCCGCGAGAAG
CCCGTCCACTCCGTCCTCGGCGGCGGCAAGCGTGAGTCCCC-CCCTCCCCCCG------------CT---------CGCG
CGCTTCGCTTCCGCCGCGT----GGTTTCGTAGATCCG---GCCGCACCGGGGTCTCGCGCTCCCGCGGGGCTTGCCCGG
GCGCTCAA-------------------------GAGGAAACCTGCGGTTGCTCTGGTCTCTCTGGAAAATT----TCGTG
TCCGTCGAGATAGGTCTCGCTGATTGCTAGTGTGC--------GTAGGAAGCGTCCCGATCTGCGATTTTCCGAGCCCAG
GTTCCGCGGCATTGCCCGTCCGCAGGGTGTGAATAGGGTAGCATACATCAGATTAGTACTATTTGTGA------------
----------------TTGAAGTGATTGTGCGATTCTGCTG-CTCTGCTC----------------------TGCTGCAT
CC---TAGTACTAGCTTAAACCCTGAGATGCTCTGTTTGTTTTCTAGGAGTTGATAGATTGCTTGTTGGTCTGGGCTTCT
GATGTGCTGTGCTTATGTGTT---ATTTTTGCAGCTGCCGACCTCTTCCTGTGGAGGAACAAGAAGATCTCCGGTGGGGT
GCTCGCGGGCGCCACCGCCATCTGGCTGCTGTTTGAGGTCCTGGAGTACCATCTCCTCACCCTCCTCTGCCACGGCTTCA
TCCTCACCCTGGGCATCCTCTTCCTCTGGTCCAACGCCTCTGCCTTCGTCAACAAGTGAGCTTCACTAAATTTCCCTTGT
TATTTGCACCCAGATCAGTTA------TAGGATGACAATGCCTGGTTAACCTGGATCAATGCTGTGTAATCACAATGATC
CTAACAGTTTTAGCAA----------------------------------------------------------------
---TTGCTCTAGTTTTTGGTTGTAAACAACTGCTTGCAATTGTTTT-CAGGTGCCCTCCCAACATTCCAGAGGTGAAGAT
CCCCGAGGACCTGGCTGTCAATGTTGCCCGCTCGCTGCGATACGAGATCAACAGGGGCTTTGCTAGCCTGAGGGCGATTG
GTCAAGGCCGTGACCTGAAGAAATTCCTGATTGTACGTTGATTGGTTGTGTGATTTAGTTTCCTTTAGCCTTCACTGCTT
AAACCCTGTTTATGTTATCAGTCGCTTATATTGTGTCGTCTCTTTGTTCTCAGGTGGTTGCAGGCCTGTGGATCCTCTCT
TTCCTTGGCAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGGTAAATGTGGTTTCTTGCTACAGTCTGTTTGTTACTT
ACATATGTGCAATAAGCTTGCGTAGCATTGTTTCACTGATCATGCCTTCTTGTTTGCAGTCTTCATGGTGCTTTACACCG
TGCCTGTTCTGTACGAGAAGTATGAGGACAAGATCGATGCTTTTGGAGAGAAGGCCATGGTCGAGCTGAAGAAGTACTAC
GCCATCTTCGATGAGAAGTGCCTGTCCAAGATTCCCAAGGGTCCGTCCAAGGATAAGAAGCAGCATTAGAACGGTAGAGA
GTACCCTGCGCAGATTTACTTTCAAAGTTGATCACTACTCGTCGGTTTTCAAGGATGGTTGTGATTCCATGTCCGTAGCT
GATAGTAGATACCACTATCTGGTCAAAACC--CTGGCACGGTCAGTAGTCATGACGTGCAACTTCTACGAACTT-AAAAG
TCATGCCAGCTTTTGCTCAATATCCTGTTTCCAATTCTATGTTCAACGTAGCATCCTCACTTGCAAGTC-GTGTTGGTGT
AATATGGCAGTGATGTTTGCGACTTTAGTAGACTTGCTATAATGAATGAAGTGGCTC-TTTTGG-TGTTATGTCATTCCT
TGGGTTCATATACACAATGAAGTGGCTCTTTTGGGTGTTCTGTAATTCGTGGGGTTTATATC--------GTTTGTTGGT
GTCGATATGCCTATGCATCCTGGAGGCTTCAGTTGATTCGGATGAATGTATTGTCTATCATGTTTGTGTGCTGAAGCGTC
TAGTTAGATTTGTCGGATCACTT-GTGGCTTGTGTATGTATAAACCACCTTGAATTTCAACGCTCTCTCTTGGGTATTGA
GCCTTTGATTGAGAAGTAAATACAGCATTAACATCTTGGAAATTACTCCCTCCTTTCTTAGATTTGCCTAAATACGGATG
TTCAAGTCACGTTTTAGTATTAGATACGCCCTCCGTTCTTTAAAGAATGTACTTTCAACTTTGTTGGTGGGTTACGAGGC
TGTTTTCCTCTTGTACGTGGCGGCTGCAACCCTAGCTGCCGCCAGAGGCCGATTTTCAACGCCGTTCTCCGGCGGCTCCC
CTCCGCCGTCGACCTCGGTCGTCGGTGGTGAGGGGGGTCGCCGGATCCACGCGTGTGGATCATTTTTACTCTTTCATAGT
CTAGGTTTTTAGGTTGTTCATCGTCTTTGCTTCGCCGGCGACGATGACGACGCTGAATAAATATTCTTCAGATCCTTTCC
TGACGAGGCCATCGGTCCTATGGTTGGGGATGGATCTAGAAATTAGTCTGTTCAAGCAAGGATGGCGTGGCGGCGGCGGC
ATCCTCGTGGTGGACCTGTGTCCTCGGGCTCCGTCGTTGCGACGACGTTTGCTCCAGCGTCGGCGTGGAGCTTGGGAGGT
AGTCCAGGAGCGGATGCAGATTGTGGTATGCATCGACGACATCTGGAAGACAGAACGTGTGCTGGGTTCGTGGTTCGTGG
ATGACAGGTATGGTTTCCTCCTTCGGCATCTTAGTCGTGGTGGGGTGCCAGATCTGGAGTTAGATGGCGTGTCCGGAGTG
TTGCCCCGGTCTGATTCGTTCAACGGCAATGGCTTCACTTTTGGTGAGCCACCTTGGAGGTCCGCAAAGCTGCATATCAG
CGATGGAGCCGCGTCGAGCTCGGGTGAGGAGGTGATCCGTCATTCTTTTCTTCGGTGGCTGCTGTGGTGGTGCCGGAGGC
AGGTGACGGGCGTTAGTGTCAAGCTCAGAGATGTTCTGCCATCTTTTCTGTTTTGTCATGTCGGTTTTTACGTGACTTGT
ACTTTGTTCTTTATGATATGAATGAGACACGTATTACCAGGCAAAAAAAAAAAACTTTGTTGGAGGGTCAAGCTATCTCA
ATATTTGACCGAGTTTGTGCAAAAATATATCAATGTTTATGAAATCAAATAGGTATATGATGAGAATATATTTTATCATG
AATCTAATGCTACTAATTTAATGGCATAAATGTTGGTGCATTATTGTATAAATACGATCAAACATAAAAGTATTTGATTT
TCCAACAAAGTTGGAAGTATACTCTTCAAAGGACGGAGGGAGTACATCTGTATCTAGACAAATCTAAGACAAGAATTTTG
AGACGGAGGGAGTACAAGAAATCAAAATGGTACTT----------GCTAAAACATGAGAAATATATAAAATCATTTGGAC
ACATGAGCACT---------------------------------------------------------------------
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>chr1D_399
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------------------------------------------------------------------------------CA
ATCTTGACATGCTACTCACGACTCTGAACATGAACTGCCCGGAAAGCTCGCAAAAGGATTTCTCCGGACAAAATTTC-AA
AGGCTTTCGGTTGCGGCAACTGTACAGTCCGGCCCATCAAAAAGACGGGACCGAACCGAGCCGGCGGCTTCCATCCAGAA
GCTTCCGGCCTACACGAGCCGCGACCCCGTCCCCGCCGACGGATGCCAGGGCCCCGCCACGCGTCACCCGCACACAGCTT
CCGCCTCCCACCCCTCCTCGCGATCTCCACCAGTCCGCCCCATTCATTATTATCGCCCCGGCCCCCACCTGCGTGGGCCC
CACGCCAGGAATGACTCCC-CCTCCATCCCTGTCGCGGCCGTTGCTGCCCAGAAGCACTCGCCCCGTGCACCCACCCCGA
CTCTCCCCGCGCCCACTGCCCGGCAGGCCCCACGCCCCGGCG-CCCGGGGCCAGGCCCACGCG-----------------
--CGGGCAATCTCGCGGAGCCGTCCGCGGCGAGATGGACGGCC-GGGGGCGCGCCGCGCGGGG-CACAAAACACGCGGCC
CCGAAGCACGGGAAAGGAAAGGGGAGAGGGATTGAGATTATTCCAGCGGCGACGGCAGGCAGGCAGGCAGAAAAGGCGTT
GCCGAACGGAAGCGTCGGGTTGGGGAGAGAGAGAGAGAGGGGGAGAGGGAGCGGCGGGCGGGCGAGCGAGCGAGCGAAGC
ATCCATGGCGGAGCACAAGGAGGAGTCGGTGATGGACAAGATCACGGAGAAGTTCCACGGGGGGTCCTCCTCCTCGTCGT
CGTCGGACGACGAGG---GGAAGCTCGGGTCGTCGTCGTCCGTCAAGGCCAAGATCTACCGCCTCTTCGGCCGCGAGAAG
CCCGTCCACTCCGTCCTCGGCGGCGGCAAGCGTGAGTCCCCTCCCTCCCCCCG------------CTCGCGTGCTCCCCG
CGCTTCGCTTACGCCGCGCCCGCGGTTTCGTAGATCCGGCCGCCGCATCGGGGTTTCGCGCTCCCGCGGGGCTAGTCTGA
GGGAGGC------------------------------AAATCTGCGGTTGTTCTTGTCTCTGTGGAAAATT----TCGTG
TTCGTCGGAGATAGGCCTCGCTGATTACTAGTGTC-------TGTAGGAAGCGTCCCGATCTGCGATTTTCGGAGCCCAG
GTTCCGCGGCATTGCCCGTCCGCAGGGTGTGAATAGGGTAGCATGCATCAGATTGGTACTATTTGTGA------------
----------------TTGAAGTGATTGTGCGATTCTGCTG-CTTTGAAGAGGAAGCAGCAGCCGAAACTAGTGCTGCAT
CC---TAGTACTAGCTTAAACCCTGAGATGCTTTGTTTGTTTTCTGGGAGTAGATAGATTGCTTGTTGGTCTGGGCTTCT
GATGTGCTGTGCTTATGTGTTGTTATATTTGCAGCTGCCGACCTCTTCCTGTGGAGGAACAAGAAGATCTCTGGCGGGGT
GCTCGCGGGCGCCACCGCCATCTGGCTGCTGTTTGAGGTCCTGGAGTACCATCTCCTCACCCTCCTCTGCCACGGCTTCA
TCCTCACCCTGGGCATCCTCTTCCTCTGGTCCAACGCCTCTGCCTTCGTCAACAAGTGAGCTTCATCAAATTTCCCTTGT
TACTTGCACCCATATCAGTTA------TAG-ATGGCAATGCCTAGT-----TGGAACAACGCTGTGTGATCACAATGATC
CTAACAGTTTTAGCAA----------------------------------------------------------------
---TGGGTCTAGTTTGTGGTTGTAAACAACTGCCTGCAATTGTTTT-CAGGTGCCCTCCCAACATTCCAGAGGTGAAGAT
CCCCGAGGACCTGGCTGTCAATGTTGCCCGCTCGCTGCGATACGAGATCAACAGGGGCTTTGCTAGCCTGAGGGCGATTG
GTCAAGGCCGTGACCTGAAGAAATTCCTGATTGTACGTTGATTGGTTGCGTGATTTAGTTTCCTTTAACCTTCACTGCTT
AAACCCTGTCTATGTGATCAGTCGCT--TATTGTGTCGTCTCTTTGTTCTCAGGTGGTTGCAGGCCTGTGGATCCTCTCT
TTTCTTGGCAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGGTAAATGTGGTTTCTTGCTACAGTCTGTTTGTTACTT
ACATATGTGCAATAAGCTTGCCTAGCATTGTTTCGCTGATCATGCCTTCTTGTTTGCAGTCTTCATGGTGCTTTACACCG
TGCCTGTTCTGTACGAGAAGTATGAGGACAAGATCGATGCTTTTGGAGAGAAGGCCATGGTCGAGCTGAAGAAGTACTAT
GCCATCTTCGATGAGAAGTGCCTGTCCAAGATTCCCAAGGGTCCGTCCAAGGATAAGAAGCAGCATTAGAACGGTAGAGA
GTACCCTGTGCAGATTTGTCTTCAAAGTTGATCACTACTCGTCGGTTTTCAAGGATGGTTGTGATTCCATGTCCGTAGCT
GATAGTAGATACCACTATCTGGTCAAAACC--CTGGCACGGTCAGTAGTCGTGACGTGCAACTTCTACGAACTT-AAAAG
TCATGCCAGCTTTTGCTCAATATCCTGTTTCCAATTCTATGTTTAACGTAGCATCCTCACTTGCAAGTTGGTGTTGGTGT
AATATGGCAGTGATGTTTGCGACTTTAGTAGACTTGCTACAATGAATGAAGTGGCTC-TTTTGGGTGTTATGTCATTCCT
GGGGTTCATATCCACAATGAAGTGGCTCTTTTGGGTGTTATGTCATTTGTGGGGTTTATCGTTTGTTGGTGTTTGTTGTT
GTTGATATGCCTATGCATTCGTGAGGCTTCAGTTTATTCGGATGAATGTTTTGTCTATCATGTTTGTGTGCTGAAGCGTC
TGGTTAGATTTGTCGGATCACTTTGTGACTTGTGTTTGTATAAACCACCTTGAATTTCAACGCTCTCTCTTGGGTATTGA
GCCTGTGGTGGGGAAGTAAGTACATCATAA----CTTGGAAATTAC----------------------------------
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---------------AAGAAATCAAAGTGGTATCAACAAAGACTCGCTGAAACATGAGAAATGTATAAAATCATTTGGGC
ATATGAGCACT---------------------------------------------------------------------
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>chr6D_1417
TGTTTATGTGCTATGTGCTATGCTTTGCAAATGCCGACCTCTTCCTGTGGAGGAACAAGAAGATCTCTGTCGGGGTGCTC
GCGGGCGCCACCGCCATCTGGCTGCTATTTGAGGTGCTGGAGTACCACCTCCTCACGCTTCGTGTCTACTACAATACTTG
TGTTGATGCCAAAATTAGCAAGCCGTTTTGCTCGGTTTCTGAAATATTTGCCAGCTGATCCGCCAAATGGTCTCTGCTAA
TTCTCTTCATTAAGTGGTCTTCTTGATATTTAGCAATCTTGATGCCTCATATAACTACTTGTTAAACTAGAGAATTTTTT
TGACCACTTGGTCAATGGTTTTATTAACAGTCAAGTTTCAGCGTGTTTCCTGTTTGCACCCTTTGTCGTAGCTGACAATG
AGAAGATGCGGATTTTTCTCCGTGCTGGCTTGCAAGCTGCACCTGACATGTGGAATACCTTGGAGCACTGCTTACTATTA
GTTGCTTGCTCGATGAATCTTATCCAACTTCTCCATGAAGTATTCTGTTATAGTAATTCAGTTTTCTTCATGCATCTATC
TAATGCACACATCTACCACCGTGAATGGTGGTTGCCTGTGTTGCTGGTTTTAATGCTCGTTGGCACAAGTCTGGCGAACT
GGGATAGCGTGTCTGCGTAGGCACAAGTTTTTTGTTTATTTGTCTTTTGAGGGGTCGTAGGCACAAGTTTAACCTAGATA
ATGCTTGCTACAGCAGACGACAACTCGTACC-------------------------------------------------
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----------------------------------------------------------------------------CGTT
TTCGTCTGAGATAGGTCTCGCTGATTACTAGTGTG-------TGTAGGAAGCGTCTCAATTTGCGATTTTCCGTGCGCAG
TTTCCGCGGCATTGCCCGTCCGCAGGGTGTGAATAGGGTGGGTAGCATCAGATTAATGCTCTGTGTACCTGAAACTTCA-
--GTTCCTAGGCTTGGTTGAAGTGATTGTGCGATTCTGCTAACTTTGCAGAGGAAGCAGC---CGAAACTAGTGTTGCAT
CC---TAGTACTAGCTTAAACCCTGATATGCTTTTTTTGTTTTCTAGA--TAGATAGATTGCTTGTTCATCTGGGCTTCT
GATGTTCTATGCTTATGTGTT---ATGATTGCAGCTACCGAACTCTTCCTGTG---------------------------
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>SNPs
-SSSS-SS-SSS--S---SSS-SSSSSSSS-SSSSSSSSSS-S-S-SSS--SS--SSSSS-S--SS-SSSS-SS--SSSS
S-SSS-SSSSSSSSSSS-S-SS-SSSSS-SSSSSSSSSSS-SS-SSS-SS-SSSSSS-SS-SSSS-SS-SSSSS-SSSSS
-S-S-SSSS-SS-S-SSS-SS-SSS--S-SSSS-SS--SSSSSSS--SS--SSS-S-SSSSSSS-S---S--S-SS-S-S
SS-SSSS-SSSS-SS-SSSS-SSSS-S--S-SSSS--SS-SSSS-SS-SS-SSSSSS-SSSSSSSSSS-S--SSS-SSSS
-SSS--SS--SS-SS-SSSSSSSS-S-SS--SSSSSSSSSSSSSSSSS-SSS-S--SSSSSSSS-SS-SSSSSS------
---S-----------S------------------------------------S---------------S--------S--
---------S--------------------S----------------------S--------------------------
------------SS-----------------------------------------------------------------S
--SS-S-SS-----------------------S-----------------------------------------------
-------------------S---------------------S---------SS-----S--S-----------S--S---
-S----------------S-------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------S-----------------------------------------------
---------------------------------------------------------------------------S----
--------------S-----------------------------------------------------------------
---------------------S---------S------------------------------------------------
---------------------------------------------SS-S----SSSSSSSSSSSS---------------
---S------------------------------------S----------S---------------------------S
-S--S---SSSSSSSSSSSSSSSSSSSSSSSSS---------------------------S----------SSSS-----
----------S-S------------S--------SSSSSSSS-------------------------------S------
---------------------------------S----S------------------------------S-S-S----SS
SS------S--S-S--------------------S---------------------------------------------
--SSS--------------------S--------------------------------------------------S---
---------------------------S----------------------------------------------------
------S--------------------------------------------S----------------------------
--------------------------------------------------------------------------------
--------------------SSSSSSS-----------------------------------------------------
S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS----------------------------------------S--S---------------------------------
---S----------------------------------------------------------------------------
--------------------------S-----------------------------S----------------------S
-----S--------------------------------------------------------------------------
----------------------------------------------S--------------------SS-----------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
-----------------------------------------S--------------------------------------
------------------------------------------------------------------------------S-
--------------------S-------S-SS------------------------------------------S-----
-----------------S--------S--------S-----S--------------------------------------
-------------------S---S---------------------------------S----------------------
---------------------------------------S----------------------------------------
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------S------S---S-----------S----------------------------------S----S----------
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-------------------------S------------------------------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_343
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---GCATGTGTGCGTTTACAGGG---------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>reverse_1557
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TGTGTGTGTAGGAAGCGTCC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------
>forward_1343
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CCAACACCCGGAACCCTAAA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>reverse_2991
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CTCTGGCACGGTCAGTAGTC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------
