>input_sequence_44784
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---------------GCGTGTGTGAGGTTCGTTTCGGCTCGCGCCTCTGCTGCTGCTTAGCTTCTACTGCTGCCATACTA
GCTGGGAACGCGCGCGAAGGCAGT-------GTCGTTTGTCGAGGTGTTTCGTGTAGGCCTGAGCAGTTCCGTCGCCGAC
GTGCGGCGGAGGGTTGAGGGAATCTAGGGGGAC--CGGGTTCGAGCGAGCGACTACTTGCCAATGGCCGAGATTTGCTGC
CAGGAAGCCAAGTCGCCGCCGGCGACCGCCGCCACGGTGGCCACGGTCTCGGCGTCGGCGGCCGCTGCGGCCGTCGCCTC
GTCGGTGATGGACAGGCGGCGCCGCAGGTTGGAGCTGAAGCGTTTCCGCCTCGCGAGCGACCTCGAGCAGTCGGCCGCGG
AGTACGCCGGCGCCCGCAAGCGGCCGAGGATACCGCGCACGGTGTCTGGCCCGTGCCCCGACGCTGCCTCGGCGTCCGAG
AACACGGAGCGTTACCCAAGGTTCGGGTTCTCCTCTGTATGCGGTCGTCGTCGCGAGATGGAGGACGCCGTCTCCATCAG
GCCGGGTTTCCTGCCTGGCTCCGGCAAGTCCCACTTCTTCGGCGTCTTCGATGGCCACGGCTGCTCACACGTACGTCGAA
CTCTCCTTTCATATGAGCGCAATTCGTGTTGTTTCTGCACAAGAGAATGGTGCTGATGACATGGTTTCGTGTCATCAGGT
GGCGACGACGTGCCAGGAGCTGATGCATGAGGCGGTGGCGGAGGAGCACGAGAAGGCGGGGCCCGGCGAGGAGCCTACGT
GGAAGGAGGTGATGGAGAGGAGCTTCGCGCGGCTGGACGAGCGGGCCGCGAACTGGGCGACCACCCGCAGCAGCGAGGAG
CCCGCCTGCCGCTGCGAGCAGAAGATGCCCTCGCGGTGCGACCACGTGGGATCCACCGCCGTCGTGGCCGTCGTCAGCCC
GACCCAGCTCGTCGTGGCCAACGCCGGCGACTCCCGTGCCGTCCTTTCCCGCGCTGGCGTGCCTGTTGCACTCTCCGTCG
ACCACAAGGTATGTATACCCTCGCGTCACCGCGCATG-GCACGCTCTGTTTCGACGCGAATTGTCCATGACCTTACGTGG
TTTACTTTCCTCAGCCTGACCGGCCGGACGAGCTGGAGCGCATCCAGGCGGCGGGCGGGCGCGTCATCTACTGGGACGGT
GCCCGGGTGCTCGGCGTCCTCGCCATGTCCCGAGCCATAGGTGAGTTTTCTAGTTCAAATTTCGCTCTCGTCAGGAGCTT
TGCTCTGCCTCCGGGGTCCCGATCCGAGCCTAACTTG--ACTTGTACGCGCGCAGGGGATGGCTACCTGAAGCCGTTCGT
GACGGCTGAGCCGGAGGTGACCGTGACGGAGCGCAGCGACGCCGACGAGTGCCTGATCCTGG-------CCAGCGACGGG
CTGTGGGACGTGGTGACCAACGAGATGGCGTGCGACGTCGCCAGGGCGTGCTTCCGGAGCAACGGCCCTCCAGAGCCGGC
CACGGCTCAGGCGCAGCCGAGCGGCGAGGCCAAGGCGAGCGAGGGGGTGAGCAAGGCGGAGTCCGACCGGGCGTGCTCCG
ACGCGGCCATGCTGCTGGCGAAGCTGGCGCTGGCGCGGGGGAGCTCCGACAACGTCAGCGTCGTGGTCGTGGATCTACGC
CGGGGATCGTGATTCTTGGAGCAGAATTCGTGCTCCATGATTGCTTCTCGTTATCCTATTTTTTTAATC-----------
--------------------------------------------------------------------------------
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----
>chr3B_1_TraesCS3B01G394600
CTTTTGTAACTGGGTCGGGTCCGGCTAAACGTGACCACCAAAAAGGTCAAAGGCACAAAATTTAGCCTCCGTCGCTCCAC
TGCCTCCGGTCCATCTATCCGCGGTA---GTTCAGTGGTAC--CGAATGCACAGTAGCCTCGACAACTGCCACACAACAC
GTAGTGCGTCCCTCCACTGCAGGAAGCACTGTTCAGCTGCATGCCGCGTCCGTCAGCCCCGCCGAAGTGCGCGCCAATGG
TTTCCCACGCCGAGCCGACGATCGGT-------GGTCACGCACGCCACCCAACGGCGCCAGTTCCGCCACGCAGATCCAT
CG------GC----CACGCACGCGCCCCTTTCCCCTAGGTTCACCTCCCCTTCGC---CCCCACCGCAACGTGGCCACGC
CAGCCCCCAACTACCGGCCGCCATCCCCCTCCCTCACCCCCACGCAACGCAGCGCGGCAAAAGGCTCCCCCGGCCTCCAC
GCCACGCGTCCCCTCCTCCCACGACCGACCAACCTCCCACCGATCGCGACCGCCCCTCACCACGTGTCCCTCCCCATCCC
TCCACCCG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CCTCCCCACGTCCATGGCGCCTACCCTCGCCCG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CTGCCATGCG
GGTCACCGAGCACCCATGGCCCCGCCGACCAT-GACCCCTCGCTGCATGGGCCGGTCAGAGCGGCCGGAGTAGAATAACC
CCGTGATATTTCCGGGCGGCACAGGAGGCACAGCCCATGTGGAGCGGGCCCCGCGGGCATCAATAAAGAAGCTGTCGCGG
CGGGCTGTCTCGCCGCGGGCCGCCACGTGTGTGCTGGGCGATAACACCGGCGTCGCCGCCGTTAGCTTCAACCTCCCCGT
GGGGCCAAGATTGCGAGCACGTGTCGTGATCTGCCCGCCGGGCGCGCCCACGCGTCCAGATCAGGTGGAGACGGACGGTG
AGCACGTCACGGACTCACGGCGACGGTAGCTATCGGGCGCTCCCGGCATGACGGCGACGGGCACCCTCGCTCCCCTTCTT
CTACCGCCCCACCCCGCGTGTGTGAGGTTCGTTTCGGCTCGCGCCTCTGCTGCTGCTTAGCTTCTACTGCTGCCATACTA
GCTGGGAACGCGCGCGAAGGCAGT-------GTCGTTTGTCGAGGTGTTTCGTGTAGGCCTGAGCAGTTCCGTCGCCGAC
GTGCGGCGGAGGGTTGAGGGAATCTAGGGGGAC--CGGGTTCGAGCGAGCGACTACTTGCCAATGGCCGAGATTTGCTGC
CAGGAAGCCAAGTCGCCGCCGGCGACCGCCGCCACGGTGGCCACGGTCTCGGCGTCGGCGGCCGCTGCGGCCGTCGCCTC
GTCGGTGATGGACAGGCGGCGCCGCAGGTTGGAGCTGAAGCGTTTCCGCCTCGCGAGCGACCTCGAGCAGTCGGCCGCGG
AGTACGCCGGCGCCCGCAAGCGGCCGAGGATACCGCGCACGGTGTCTGGCCCGTGCCCCGACGCTGCCTCGGCGTCCGAG
AACACGGAGCGTTACCCAAGGTTCGGGTTCTCCTCTGTATGCGGTCGTCGTCGCGAGATGGAGGACGCCGTCTCCATCAG
GCCGGGTTTCCTGCCTGGCTCCGGCAAGTCCCACTTCTTCGGCGTCTTCGATGGCCACGGCTGCTCACACGTACGTCGAA
CTCTCCTTTCATATGAGCGCAATTCGTGTTGTTTCTGCACAAGAGAATGGTGCTGATGACATGGTTTCGTGTCATCAGGT
GGCGACGACGTGCCAGGAGCTGATGCATGAGGCGGTGGCGGAGGAGCACGAGAAGGCGGGGCCCGGCGAGGAGCCTACGT
GGAAGGAGGTGATGGAGAGGAGCTTCGCGCGGCTGGACGAGCGGGCCGCGAACTGGGCGACCACCCGCAGCAGCGAGGAG
CCCGCCTGCCGCTGCGAGCAGAAGATGCCCTCGCGGTGCGACCACGTGGGATCCACCGCCGTCGTGGCCGTCGTCAGCCC
GACCCAGCTCGTCGTGGCCAACGCCGGCGACTCCCGTGCCGTCCTTTCCCGCGCTGGCGTGCCTGTTGCACTCTCCGTCG
ACCACAAGGTATGTATACCCTCGCGTCACCGCGCATG-GCACGCTCTGTTTCGACGCGAATTGTCCATGACCTTACGTGG
TTTACTTTCCTCAGCCTGACCGGCCGGACGAGCTGGAGCGCATCCAGGCGGCGGGCGGGCGCGTCATCTACTGGGACGGT
GCCCGGGTGCTCGGCGTCCTCGCCATGTCCCGAGCCATAGGTGAGTTTTCTAGTTCAAATTTCGCTCTCGTCAGGAGCTT
TGCTCTGCCTCCGGGGTCCCGATCCGAGCCTAACTTG--ACTTGTACGCGCGCAGGGGATGGCTACCTGAAGCCGTTCGT
GACGGCTGAGCCGGAGGTGACCGTGACGGAGCGCAGCGACGCCGACGAGTGCCTGATCCTGG-------CCAGCGACGGG
CTGTGGGACGTGGTGACCAACGAGATGGCGTGCGACGTCGCCAGGGCGTGCTTCCGGAGCAACGGCCCTCCAGAGCCGGC
CACGGCTCAGGCGCAGCCGAGCGGCGAGGCCAAGGCGAGCGAGGGGGTGAGCAAGGCGGAGTCCGACCGGGCGTGCTCCG
ACGCGGCCATGCTGCTGGCGAAGCTGGCGCTGGCGCGGGGGAGCTCCGACAACGTCAGCGTCGTGGTCGTGGATCTACGC
CGGGGATCGTGATTCTTGGAGCAGAATTCGTGCTCCATGATTGCTTCTCGTTATCCTATTTTTTTAATCCATGCTAATTT
CTTTCTCTCCTCGTTTCTGAATTTATCTTTGCTGCCTCGATGTGGTAGTA-------TAGATCTAGTAGTA-T--AGTTT
CTAATTCTGCCCGCCAAAAAGAAGTTGAACAGATAAGCTCAGCTGCTTCAACTGCATCGTGCTACATACACGAAGATATT
CGAGATGT------------------------------------------------------------------------
------------TGTTAACAAGTCGATACGCAGATCTTTATTTAGCCCTAAGCTATTCATATCCATCGTACGTACACGA-
--GATAAGCGCGAATTAGGTGGATCGTGACGACGGAAGCTGG---CCGCCACTCGCGTCTTACTCCTGACAACTCGTTGA
TATTCGTGGGTGGGTGATC--GCCTCGTACCGTCGTAGGATCGGAGCAGAGAAAAGTCGAAGAACAGATGCTGATCTAGT
GTCTA---------TCTATGCACTGTGCGTGGGGCTAAGCTGTACTGAACCCGAATGAAAACGTGCCCCCCTTTTACTGC
ACGATTTTTCTTCAGTGGGACAACAAAAGGACGC---TGATAGAACGGGATGAATGATGCTGGGGGGCTACGTGTCGAGG
C------CTGTCGCTGTCGTCCTCCCGATGCGTTTCTGTTGGGGGGTGTCGTGGGGAGAAAGAGAAAAGTCTCCACTGAC
CCCGGGGCGTACACGTCCCGAGTTAGGCGCCGGGGCATTATTGAGCCAG----CCCTCCGCGGCACACCCACCGCCACCG
GTCCCGTGGCCGCACTGCACGCGTCGACGCGCACTGCTGCGCCGCACGACGCGACCCGGCTGGAAAAGGGGAGGGAGGAA
GGAGGGGGATTGTAACGTGCCGTGCCGTCGGTGACTGTTTGCTGACTCGATCTGCACTTGTTTATTGT---TGATGAAGA
TCCCTTCGCGTAACTCCACGGA--TGGATGCCATCGGCCTTGGCGTGGTTGCACAGCGTGTAGCTCTA------GCGCGG
CGCACGGTCGGGGAGGGAGGAGAGAAGGCTCCTGGAAGTGGCGGGCACGGTATCTGGGCGTAGGGTTGACACCAAAGGGT
GCGC
>chr3A_69
--------------------------------------------------------------------CCCTCACTCCAC
TGCCCCCGGTCCATCTCTCCGTGGTAATAGTTCAGTGGTAC--AGACCACACAGCAGCCGCGACAACTGCCACACAACAC
GTAGTGCGCCCCTCCACTGCAGGAAGCACTGTTGAGCTGCATGCCGCGCCCGTCAGCCCCGCCGAAGTGCGCGCCAATGG
TTTCCCACGCCGAGCCGACGATCGGTCATCGGTGGTCACGCACGCCACGCAACGGCGCCAGTTCCGCCACGCAGATCCAT
CTCTCTCGGCCACGCACGCACGCGCCCCTTTCCCCGAGGTTCACCTCCCCTTCGCCCGCCCCACCCCAACGTGGCCACGC
CAGCCCCCAACTACCGGCCGCCCT-CCCCTCCCCCACCCCCACGCAACGGAGCACAGCAAAAGGCACCCCCGGCCTCCAC
GCCACGCGTCCCCCCCTCCCACGACCGACCAACCTCCCACCGATCGCGACCGCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGACCGCCCCTCCCCACGTCCATGGCGCCTACCCTCGCCCG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CTGCCATGCG
GGACACCGAGTTCCCTTGGCCCCGCCGTCCAT-GACCCCTCGCTGCATGGGCCGGTCAGCGCGGCCGGAGTAGAATAACC
CCGTGATATTTCCGGGCGGCACAGGGGGCAGAGCCCATGTGGCGCGGGCCCCGCGGGCATCAATAAAGAAGCTGCCGCGG
CGGGCTGTCTCGCCGCGGGCCGCCACGTGTGTGCCGGGCGATAACACCGGCGTCGCCGCCGTTAGCATCAGCCTCCCGGT
GGGGCCGAGATCGCGAGCACGTGTCGCGATCTGCCCGCCGGGCGCGCCCACGCGTCCAGATCAGGTGGAGACGGGCGGCG
AGCACGTCACGGACTCACGGCGACGGTAGCTATCGGGCGCTCCCGCCATGACGGCGACGGGCACCCTCCCTCCCCTTCTT
CTACCGCCCCGCCCCGCGTGCGTGAGGTTCGTTTCGGCTCGCGCCTCTGCCGCTGCTTAGCTTCTACTGCTGCCATTCGA
GCTGGGAACGCACGCGCGCGAAGGCGCTGTCGTCGTGTGTCGAGGTGTTTCGTGTAGGCCTCTGGAGTTCCGTCGCCGAC
GTGCGGCGGAGGGTGGTGGGAATCTAGGGCGGCGTCGGGGTCGAGCGAGCGAGTAGTTTCCAATGGCCGAGATCTGCTGC
CAGGAAGCCAAGTCGCCGCCGGCGACCGCGGCCACGGTGGCCACGGTCTCGGCTTCGGCGGCCGCCGCGGCCGTCGCCTC
GTCGGTGATGGACAGGCGGCGCCGCAGGCTGGAGCTGAAGCGCTTCCGCCTCGCGAGCGACCTCGAGCAGTCGGCCGCGG
AGTACGCCGGCGCCCGCAAGCGGCCGAGGATACCGCGCACGGTGTCCGGCCCGTGCCCCGACGCTGCCTCGGCGTCCGAG
AACGCGGAGCGTTGCCCGAGGTTCGGGTTCTCCTCGGTGTGCGGCCGTCGTCGCGAGATGGAGGACGCCGTCTCCATCAG
GCCCGGTTTCTTGCCCGGCTCCGGCAAGTCCCACTTCTTCGGCGTCTTCGATGGCCACGGCTGCTCACACGTACGTCAAA
CTTTGCTCGCATATGAGCGCAATTCATGTTGTTTCTGCACAAGGGAAGGGTGCTGATGGCATGGTTTCGTGGCATCAGGT
GGCGACGACGTGCCAGGAGCTGATGCATGAGGTGGTGGCGGAGGAGCACCAGAAGGCGGGGTCCGGCGAGGAGCCTGTGT
GGAAGGAGGTGATGGAGAGGAGCTTCGCGCGGCTGGACGAGCGGGCCGCGAACTGGGCGACCACCCGCAGCAGCGAGGAG
CCCGCCTGCCGCTGCGAGCAGAAGATGCCCTCGCGGTGCGACCACGTGGGATCCACCGCCGTCGTGGCAGTCGTCAGCCC
GACCCAGCTCGTCGTGGGCAACGCCGGCGACTCCCGTGCCGTCCTTTCCCGCGCCGGCGTCCCCGTTGCACTCTCCGTCG
ACCACAAGGTACGCGCGTGCTCTCGCGTGGAGCGTCCTGCCCCCTCTGTTTGCGTGCGAACTGTCCATAACCTTGACATG
AA---TTTCCTCAGCCTGACCGGCCGGACGAGCTGGAGCGCATCCAGGCGGCGGGCGGGCGCGTCATCTACTGGGACGGC
GCGCGGGTGCTCGGCGTCCTCGCCATGTCTCGAGCCATAGGTGAGTTTTCTAGTTCAAATTTCGCTCTCGTCAGGAGCTT
TGCTCTGCCTCTGGGGTCCCGATCTGAGTCTAACCTGTGACTTGTACGTTCGTAGGGGATGGCTACCTGAAGCCGTTCGT
GACGGCGGAGCCGGAGGTGACCGTGACGGAGCGCAGCGACGCCGACGAGTGCCTGATCCTGG-------CCAGCGACGGG
CTGTGGGACGTGGTGACCAACGAGATGGCGTGCGACGTCGCCAGGGCGTGCTTCCGGAGCAACGGCCCACCAGAGCCGGC
CGCGGCTCAGGCGC------------------AGGCGAGCGAGGGGGTGAGCAAGGCGGAGTCCGACCGGGCGTGCTCCG
ACGCGGCCATGCTGCTGGCGAAGCTGGCGCTGGCGCGGGGGAGCTCCGACAACGTGAGCGTCGTGGTCGTGGATCTGCGC
CGGGGATCGTGATTCTTGGAGCGGAATTCGTGCTCCATGATTGCTTCTCGTTATCCTATTTTT-TAATCCATGCTAATTT
CTTC----CCCCGTTTCTAAATTTATCTTCGCTGCCTCGATGTAGTAGTAGTAGTATTAGATCTAGTAGTACCACAGTTT
CTAATTCTACCCGCCAAAAAGAAGTTGAACAGATAAGCTCAGCTGTTTCAACTGCATCGTAACACGTACACGAAGATATT
TGATATGT------------------------------------------------------------------------
--------------TTAACAAGTCGATAAGAAGATCT--------CCCTAAGCTCTTCATATCCATCGTACGTAGAGCAC
ACGATAGGCACGAATTAGGTGGACCGTGACGACGGAAGCTGGGCACC---ACTCGCGTGTTACCCCTGACAACTC-----
---------------------GCCTCGTATCGTCGCAGGATCGGAGCAGAGAAAAGTCGAAGAACAGATGCTGATCTAGT
AGTACTAGTACCTATCTACCCACTGTGCGTGGGGCCAAGCTGTACTGAACCGGAATGAAACGTGCGCCC---TTTACCGC
ACGATTTTTCTTGGGTGGAGCAACAAAAGGGCGCCGATGATAGAGCGGGATGAATGATGCGGGGGGGCTACGTGTCGGGG
CCTTTCGCTGTCGCTGTCGTCCTCCCGATGCGTTTCTGTTGGGGG-TGTCGTGGGGAGAAAGGGAAAAGTCTCCAGTGAC
CCC-GGGCGTACACGTCCCGAGTTAGGCGCCGGGGCATTATTGGGCGTGCCCTCCCTCCGCGGCACACCCACCGCCACCG
GTCCCGTGGCCGCACCGCCCGCGTCGACGCGCACAGCTGCGCCGCACGACGCGACCCGGCTGGAAAAGGGGAGGGAGGCC
-----------GTAACGTGCCGTGCCGTGC-TGACTGTTTGCTGACTCGGTATGCACTTGTTTATTGTTGATGATGAAGA
TCCCTTCGCGTAGCTCC---------------------------------------------------------------
--------------------------------------------------------------------------------
----
>chr3D_100
CGTGG---------------------------------------------------------------------------
---------------------------TAGTTCAGTGGTACTGAGACCGCACAGTAGCCGCGACAACTGCCACACAACAC
GTAGTGCGTCCCTCCACTGCAGGAAGCACTGTTCAGCTGCATGCCGCGCCTGTCAGCCCCGCCGAAGTGCGCGCCAATGG
TTTCCCACGCCGAGCCGACGATCGGT-------GGTCACGC----CACACAACGGCGCCAGTTCCGCCACGCAGATCCAT
CTCTCTCAGC----CACGCACGCGCGCCTTTCCCCGAGGTTCACCTCCCCTTCGC---CCCCACCGCAACGTGGCCACGC
CAGCCCCCAACTACCAGCCGCCTTCCCCCTCCCCCACCCCCACGCAACGGAGCACACCAAAAGGCACCCCCGGCCTCCAC
GCCACGCGTCCCCTCCTCCCACGACCGACCAACCTCCCACCGATCGCGACCGCCCCTTACCACGTGTCCCTCCCCCTCCA
CCCACCCG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CCTCCCACGTCCACACGCCCCTACCCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCTACCCCCATCCACTGCCATGCG
GGTCACCGAGCACCCATGGCCCCGCCGGCCATCGACCCGTCGCTGCATGGACCGGTCAGCACGGCCGGAGTAGAATAACC
CCGTGATATTTCCGGGCGGCACAGGAGGCACAGCCCATGTGTCGCGGGCCCCGCGGGCATCAATAAAGAAGCTGCCGCGG
CGGGCTGTCTCGCGGCGAGCCGCCACGTGTGTGTCTGGCGATAACACCGGCGTCGCCGCCGTTAGCATCAGCCTCCCGGT
GGGGCCGAGATCGCGAGCACGTGTCGTCATCTGCCCGCCGGGCGCGCCCACGCGTCCAGATCAGGTGGAGACGGACGGCG
AGCACGTCACGGACTCACGGCGACGGTAGCTTTCGGGCGCTCCCGCCATGACGGCGACGGGCACCCTCCCTCCCCTTCTT
CTACCGCCCCACCCCGCGTGTGTGAGGTTCGTTTCGGCTCGCGCCTCTGCTGCTGCTTAGCTTCTACTGCTGCCATTCGA
GCTGGGAACGCGCGCGAAGGTGCT-------GTAGTGTGTCGAGGTGTTTCGTGTAGGCCTCAGGGTTTCCGTCGCCGAC
GTGCGGCGGAGGGCAGTGGGAATCTAGGGCGGCGTCGGGGTCGAGCGAGCGATTACTTGCCAATGGCCGCGATCTGCTGC
CAGGAAGCCAAGTCGCCGCCGGCTACCGCCGCCACGGTGGCCACGGTCTCGGCATCGGCGGCCGCCGCGGCCGTTGCCTC
TTCGGTGATGGACAGGCGGCGCCGCAGGCTGGAGCTGAAGCGCTTCCGCCTCGCGAGCGACCTCGAGCAGTCGGCCGCGG
AGTACGCCGGCGCCCGCAAGCGGCCCAGGATACCGCGCACGGTGTCTGGCCCGTGCCCCGACGCTGCCTCGGCTTCCGAG
AACATGGATCGTTGCCCGAGGTACGGGTTTTCCTCGGTGTGCGGCCGTCGTCGCGAGATGGAGGACGCCGTCTCCATCAG
GCCGGGTTTCTTGCCCGGCTCCGGCAAGTCCCACTTCTTCGGCGTCTTCGATGGCCACGGCTGCTCACACGTACGTCGAA
CATTACTCGCATATGAGCGCAATTCATGTTGTTTCTGCACAAGGGAATGGAGCTGACGACATGGTTTCGTGTCATCAGGT
GGCGACGACGTGCCAGGAGCTGATGCATGAGGCGGTGGCGGAGGAGCACGAGAAGGCGGGCTCCGGCGAGGGGCCTGTGT
GGAAGGAGGTGATGGAGAGGAGCTTCGCGCGGCTGGACGAACGGGCCGCGAACTGGGCGACCACCCGCAGCAGCGAGGAG
CCCGCCTGCCGTTGCGAGCAGAAGATGCCCTCGCGGTGCGACCACGTGGGATCCACCGCCGTCGTGGCCGTCGTCAGCCC
GATCCAGATCGTCGTGGCCAACGCCGGCGACTCCCGTGCCGTCCTTTCCCGCGCTGGCGTCCCCGTTGCCCTCTCCGTTG
ACCACAAGGTACGCGCGTGCTCTCGCGTGGAGCGCCCTGCCCCCTCTGTTTGCGTGCGAACTGTCCATAACCTTGACATG
AA---TTTTCTCAGCCTGATCGGCCGGACGAGCTGGAGCGCATCCAGGCGGCGGGCGGGCGCGTCATCTACTGGGACGGC
GCCCGGGTGCTCGGCGTCCTCGCCATGTCCCGAGCCATAGGTGAGTTCG-TAGCTCAAATTTCGCTCTCGTCAGGAGCTT
TGCTCTGTCTCTGGGGTCCCGATCCGAGCCTAACTTG--GCTTGTACGTTCGCAGGGGATGGCTACCTGAAGCCGTTCGT
GACGGCGGAGCCGGAGGTGACCGTGACGGAGCGCAGCGACGCCGACGAGTGCCTGATCCTGG-------CCAGCGACGGG
CTGTGGGACGTGGTGACCAACGAGATGGCGTGCGACGTGGCCAGGGCGTGCTTCCGGAGCAACGGCCGTCCAGAGCCGGC
CACAGCTCAGGCGCAGGCGAGCGGCGAGGCCAAGGCGAGCGAGGGGGTGAGCAAGGCGGAGTCCGACCGGGCGTGCTCCG
ACGCGGCCATGCTGCTGGCGAAGCTGGCGCTGGCGCGGGGGAGCTCCGACAACGTGAGCGTCGTGGTCGTGGATCTGCGC
CGGGGATCGTGATTCTTGGAGCAGAATTCGTGCTCCATGATTGCTTCTCGTTATCCTATTTTTTTAATCCATGCTAATTT
CTTC----CCTCGTTTCTAAATTTACATTTGCTGCCTCGATGTAGTAGTA-------TAGATCTAGTAGTACT--AGTTT
ATAATTCTACCCGCCAAAATGAAGTTGAACAGATAAGCTCAGCTGTTTCAACTGCATCGT---ACGTACACGAAGAACTC
CCTCCACTCCCTCCGTCCCATAAGACTTTTTTTCACAGTACTGTAGTGTGAAAAAAACGTCCTACATTATGGGCCGAAGG
GAGTATTTGATATGTTAACAAGTCGATAAGAAGATCTTTATTTAACCATAAGCTCTTCATATCCATCGTACGTA------
-------------ATTAGGTGGATCGTGACGACGGAAGCTGG---CC---ACTCGCGTCTTACCCCTGACGACTCGTTGA
TATTCGTGGGTGAAGGTGATTGCCTCGTATCGTCGCAGGATCGGAGCAGAGAAAAGTCGAACAGATGCCGAT--------
-----------CTATCTATGCACTGTGCGTGGGGCCAAGCTGTACTGAACCCGAATGAAACGTGCCCCC---TTCACCGC
ACGATTTCTCTTCAGTGGGACAACAAAAGGGCGCTGATGATAGAACGGGATGAATGATGCTGGGGGGCTACGTGTCGGGG
CCT------GTCGCTGTCGTCCTCTCGATGCGTTTCTGTTGGGGG-TGTCGTGGGGAGAAAGAGAAAAGTCTCCACTGAC
CCC-GGGCGTACACGTCCCGAGTTAGGCGCCGGGACATTATTGAGCTTGCC----CTCCGCGGCACACCCACCGCCACCG
GTCCCGTGGCCGCACTGCACGCGTCGACGCGCACAGCTGCGCCGCACGACGCGACCCGGCTGGAAAAGGGGAGGGAGGAG
GGAGGGGGGAGGCCGTAA--CGTGCCGTCGGTGACTGTTTGCTGACTCGATCTGCACTTGTTTATTGTTGA---TTAAGG
TCCCTTCGCGTAGCAGCTCCATGGTGGATGCCGTCGGCCTTGGCGTGGCTGCACAGCGTGTAGCTGTAGCGCGGGCGCGG
CGCACCCCGGGGGAGGGAGGGGAGAAGGTTCCGGGAAGTGGCGGGCACGGTATCTGGGCGTAGGGTTGACACCAAAGGGA
GCGC
>chr1D_1829
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----------------------------------------------------CTGGACGACCACCCGTAGCAGCGAGGAA
CTCGCCTGCCGCTGCGAGCAGAAGATGCGACGGCGGTGCGACCATGTGGGATCCACCGCCGTCGTGGCCATCGTCAGCCC
GACCCAGCTCGTTGTAGCCAACG-CGGCGACTCCCGTGCCGTCCTTTCCCGCGCCGGTGTCCCTATTGCCCTCTCCGTCG
ACCACAAGGTACGCGTATGCTCTCGTCAGGAA------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TGCTCTGCCTCT-GGGTCCCGATCCGAGCC-AACTTG--ACTTGTACGCGCGCAGGGGATGGCTACCTGAAGCCGTTCGT
GACGGCGGAGCCGGAGGTGACTGTGATGGAGCGCAGTGACGCCGACGAGTGCCTGATACTGGCCTCTGGCCAGCGACGGG
CTATGGGACGTGGTGACCAACGAGATGGCATGCAACGTGGCCAGGGCGTGCTTCCGGAGCAACGGCCCGCCGGAGCCGGC
CGCATCGCAGGCGCAGCCGAGCAGCGAGGCCAGGACGAGCGAGGGGGTGAGCAAGGCGGAGTCCGAC-------------
--GCGGCCATGCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S------
----S-----------S----S---------------------S--SS-----------S--------------------
------------------------------------------------S-------------------------------
------------------------------------------------S-------------------------------
-S---------------------------------S--------------------------------------------
----------------------S----------S---------------S---S-S---------S--------------
---------------------------------------------------------S-----------------S---S
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-------------------------------S--------------------
------------------------------------------S-------------------------------S-----
----------------------------------S-------------------------------S---S------S--
------S----S------------------------------------------------------------------S-
---------------------------------------------S----------------------S-----------
----------------------------------------------------------------------------S-S-
--------------------S---------------S------------------------S--S---------------
--------------S-S------------S-S-------S------------S--------------------S------
-----------------------------------------------------S-----------S--------------
----------------------------S-------------S-------------------------------------
--------------------------------------------------------------------------------
-------------S---S-----------------S--S-----S-----------------------------------
----------S----S----------------------------------------------------------------
--S-S--SS----------------S-----------------S------------------------------------
-------------------------------------------------------------S--------------SS--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-----------S-SS--SS---S-----SSSSSSSSS---S-S--------SSSS-----S-------S-----SSSSS-
SSSSS--------------------------------------------------------------------------S
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S--------------------S---
--------------------------------------------------------------------------------
---SSSSS----------S------------------------S------------------------------------
--------S------------------------------------S--------------SSS--S--------------
---S----------------------------------------------------------------------------
----------------------------S-S-------------S---------S-------------------S-SS--
------S--S-------------------------------------SSS-------------S----------------
------------SSS-SSS----------S-----S--------------------------------------------
SSSSS------------------------------S------------------------SSSSS----SSS-----S--
------------------------------S----------------------------------------------S--
---------------------------------------------S----------------------------------
---S------------------------------------------SS--------------------------------
----------------------------------S--------------------------------------------S
--------SSS---------------------------------------------------------------------
------------S----S-SSS----------S---------------S----------------S--------------
-----SSSS-----------S-------S---S----------------------------------------------S
----
>forward_1518
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----------------------------------------------------------CCGTTAGCTTCAACCTCCCC--
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----
>reverse_2772
--------------------------------------------------------------------------------
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---------------------------------------------------CGACGCGAATTGTCCATGAC---------
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----
>forward_1822
--------------------------------------------------------------------------------
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------------------------------------------AGGTGTTTCGTGTAGGCCTG------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_2774
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ACGCGAATTGTCCATGACCT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_1825
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TGTTTCGTGTAGGCCTGAGC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_3529
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GCCCGCCAAAAAGAAGTTGA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
