>input_sequence_44768
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-----CTA---------TATATGAGTTGGGCCTCAAAAGGTCCTAATTATGAGTAGTTTAACGTTAGGATTCCGTGGACG
GGAAGGATCCAAATTAGCGCCGATTTATTCTCTTCCATCTGTTAAGGCAACCTACGATTACGGTTTCAAAAGCACCGCCG
CCGCGCTCGTCTCGATCTTGTTCTCCAGGAAACATGAGC---GCCGCCGCCGCCTCCGACTGTTCCAGCCTTCTGCCAGA
GCTCCTCGAGGAGATCTCACGGCGCGTAGGCGACGTGAAACGCGACAGCGATGCGTTCGCCGCCGTCTGCAGACCGTGGC
GCCGCGCGTCGAGCGCCACCGGCGCTCGGCTCAACCGCCACGCCCTGCACCTCGTGTCCCTGTGCTCCGGCGCCACCGCC
GTCGACTTCTCCGACCGCGCCGGCGAGGTCAAGAAGACGGTCTACCTTGGGAGCGACGCCGGCGGCGCGCGGCCCCACCG
CGTCATCGGCTGCTCCCGGGACTGGCTCGTCGTCGTCGACAGGGCGTGCGGCGCGTCGCTCCTCGAGCCCGTAGCTGACG
GCAGGCGGCTCCCGCTGCCGGACGTCACGTCGTTCGACTGCGGGTTCCTCAGGCCCTTGCTCGCCGACGACCACGGCGGA
GCAGGCGCGTGTTTCTCCGTGGACAATCACGCGTATCGCTCGCACATCCGGGGCCCTAACAAGAAGATCCGGCCGTCGCC
TCCCGAGA---CGGTGCCGATCCAGGCCATGCAAGACGAGTTCTTCCACAAGGCCGCGCTCGCCGTCTCGGGAGGAGACC
GGCGGGAGAGCTTCACTGTGATGGTGATCCACAGCGGCGGCTCCGGGCTGGCGTTCGCAA-GGCCCGGCGACAAGTGCTG
GACGTCGCTGCGCACGTCGCCGTCCACGCGGTACCAGGACATCATCCACCACGACGGCGCCTTCTACACAATCACCCGCG
GCGACGGGTCTATCGAGGCCTGGGAGCCGCCGGCGAACGGCGACCGCCGCACCCTGAAGCCGCGCCTCGTGACGGGGCCG
GTCATGACGTGGGAGTTCAAGCGGTGCGTGGAGTTCCACACCGAGACGTTCCGGCAGCAGGCCTACTACGAGGGCGCCAG
GTACCTCGCCGAGCGCGACGACGGC------GGCCTTATCGTGGTGAGCACGGTGGCCATCTTCACCGACGGCAACGCCC
TGCGGACGCGGCGCTTCAAGGTGTTCGCCGTCGACGAGCGCGAGGACAGGTGGCGCGAGCTACAGGACATCGGCGACGAC
GTGGCGCTGCTGGTGGGGATCAACCACGGGAGGCGCGTGTCGACGCGGGAGTACCAGTGCATGGAGCCCGGCCGCATCTA
CTACGTGCTCAAGTCGTTCGCACCCGAGTTCGACGCCATGGATGAGGACAGAGACGACGTGGAGGAGTGCTCCAGGTACG
AGAGCGGGGTGCACGAGCTCCGGACCGGCGTCGCCTCCAGGAAAGCCGTCTTCAGGCATGCCGCCGGCGGTCACCCTGTT
TGGTTCGTGCCTCCAGTTCCTGCTGCTCCCCGCAGGTGAGGTAGCAG----------CCGTGACAACTGACACCACG---
-CTGTGCGCACCCAGTAGC----------------------------------------GACTTTTCT------------
---CTGTGAAAATTATGTGTT----GTTTCAGAAATAGTAATTGTTCAGGTATTGTTTTGATCTGTCGAAATTCAAAACC
GACATCTTCCTCCTCGAGTGCCGCGTTGTAACCT-------------------TTTTTTCAAAAACAAAATCATA-----
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------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G482600
AAAAATGGTCGTGCCATGCTCGGCCTTAAGGCTTGGCTTCGGAGATCAATCTTGTCCCATGGCGGGCCGAAGGCTAGCCC
GACCTTTCTTTCGCGTGCCGTGGTCGTCCCATGCCATG------------------------------------------
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----------------------------------------------------------------TCGAAAATCCATGCGT
TCAGGCAGGCCCACGAGGCACGAGCACGCCCCATATGGCCATGTTTGCCCGGCGACCCTCCTCCTCTTTCCTTCTTCCTC
GCGTTTCTCGTTTCGAGCACGAGTCTATGCTCTCGTTTCGATGGGCCAA-----GCCCCATGACTCATCCTCAGCTCCTT
CACTCTCCC-TTCTTCCACATATTTCTCTTTTCAATCCACCTCGCTATCGGGCGGTCGAGCTCTCCTTCTTCCTACCAAT
GCCCACTGTTGCAAATGACTAAGCGGGGAACAGTGTCCTGATAAAGCAATCCCTCTAATCTCGGGGTGCTACCCATCATG
TGACAAAATATCTGGCAATCCTAATTTGGAAAAACCAGATGGGTGACCTTCA--------TATCGATTTAATTAGAATAC
AAGTGTTT-CC-ACTTGTTCAACCGGCTCTCATTTTCGCTCGATTTACATGAAAACTGGCAGGGGGTTCCCTTTGGTTCG
TCTATGGGTGGTCCACAAAGCTTAAAACCCGAGCAAGGCGCAAGTTCTGGTTTTCCCCAGTTCGACCAGCACCGATACAT
TTA--AAAAGACTAGGTTGGCAACACAATGTCTGTTGATTGGTCTTCTTCTTCACTCTTCTTTGCCCCTCCGCAATGTCC
ATCCCTCCTCGTCATCGAGCTCTAGAGAGTCAAAGGTGTGTGGTCTCTCCCTAAGCCCAGTGAGCAAATATTTGTCCATT
AGAT-TTGCCAATTTACAAACATTTCTTAATGGCCTTGATACACTTGTTTCTATATGCATCCTTTATACACTTGTTTATT
TTGGGAACTTTTTTGAGGGGGAACACATACCTTGTTGGGCAGGGCTCACGGGCTGATCACGGACCGAACCATTGGACTTT
CCTTGCTA---------TATATGAGTTGGGCCTCAAAAGGTCCTAATTATGAGTAGTTTAACGTTAGGATTCCGTGGACG
GGAAGGATCCAAATTAGCGCCGATTTATTCTCTTCCATCTGTTAAGGCAACCTACGATTACGGTTTCAAAAGCACCGCCG
CCGCGCTCGTCTCGATCTTGTTCTCCAGGAAACATGAGC---GCCGCCGCCGCCTCCGACTGTTCCAGCCTTCTGCCAGA
GCTCCTCGAGGAGATCTCACGGCGCGTAGGCGACGTGAAACGCGACAGCGATGCGTTCGCCGCCGTCTGCAGACCGTGGC
GCCGCGCGTCGAGCGCCACCGGCGCTCGGCTCAACCGCCACGCCCTGCACCTCGTGTCCCTGTGCTCCGGCGCCACCGCC
GTCGACTTCTCCGACCGCGCCGGCGAGGTCAAGAAGACGGTCTACCTTGGGAGCGACGCCGGCGGCGCGCGGCCCCACCG
CGTCATCGGCTGCTCCCGGGACTGGCTCGTCGTCGTCGACAGGGCGTGCGGCGCGTCGCTCCTCGAGCCCGTAGCTGACG
GCAGGCGGCTCCCGCTGCCGGACGTCACGTCGTTCGACTGCGGGTTCCTCAGGCCCTTGCTCGCCGACGACCACGGCGGA
GCAGGCGCGTGTTTCTCCGTGGACAATCACGCGTATCGCTCGCACATCCGGGGCCCTAACAAGAAGATCCGGCCGTCGCC
TCCCGAGA---CGGTGCCGATCCAGGCCATGCAAGACGAGTTCTTCCACAAGGCCGCGCTCGCCGTCTCGGGAGGAGACC
GGCGGGAGAGCTTCACTGTGATGGTGATCCACAGCGGCGGCTCCGGGCTGGCGTTCGCAA-GGCCCGGCGACAAGTGCTG
GACGTCGCTGCGCACGTCGCCGTCCACGCGGTACCAGGACATCATCCACCACGACGGCGCCTTCTACACAATCACCCGCG
GCGACGGGTCTATCGAGGCCTGGGAGCCGCCGGCGAACGGCGACCGCCGCACCCTGAAGCCGCGCCTCGTGACGGGGCCG
GTCATGACGTGGGAGTTCAAGCGGTGCGTGGAGTTCCACACCGAGACGTTCCGGCAGCAGGCCTACTACGAGGGCGCCAG
GTACCTCGCCGAGCGCGACGACGGC------GGCCTTATCGTGGTGAGCACGGTGGCCATCTTCACCGACGGCAACGCCC
TGCGGACGCGGCGCTTCAAGGTGTTCGCCGTCGACGAGCGCGAGGACAGGTGGCGCGAGCTACAGGACATCGGCGACGAC
GTGGCGCTGCTGGTGGGGATCAACCACGGGAGGCGCGTGTCGACGCGGGAGTACCAGTGCATGGAGCCCGGCCGCATCTA
CTACGTGCTCAAGTCGTTCGCACCCGAGTTCGACGCCATGGATGAGGACAGAGACGACGTGGAGGAGTGCTCCAGGTACG
AGAGCGGGGTGCACGAGCTCCGGACCGGCGTCGCCTCCAGGAAAGCCGTCTTCAGGCATGCCGCCGGCGGTCACCCTGTT
TGGTTCGTGCCTCCAGTTCCTGCTGCTCCCCGCAGGTGAGGTAGCAG----------CCGTGACAACTGACACCACG---
-CTGTGCGCACCCAGTAGC----------------------------------------GACTTTTCT------------
---CTGTGAAAATTATGTGTT----GTTTCAGAAATAGTAATTGTTCAGGTATTGTTTTGATCTGTCGAAATTCAAAACC
GACATCTTCCTCCTCGAGTGCCGCGTTGTAACCT-------------------TTTTTTCAAAAACAAAATCATAATAAA
ATATTTGAAGTTTCAAAAAATGTCAAACT-TTTTTCTACAAATACATATGCATATTCTTCAAGTATGTATAAAGCGTCT-
------------------------------------------------TCAAATACAACAAAGGAAAAGCTCATTTTAGT
CTGTGTATTTATCTTTTTTTTGTGTACCTCACATATGAACATGTGTTCATGAAATTTTGTATGTG---------TACATA
TACTATAATATATGTCTATGTGCATGTCTTTTTTCTTCATATTTTTATGTTTTGGCGGCGAACACT--------------
--------------CCTGAAGAAGAGGAAATTAGCCACGTTAGCCC---TTTTTTGTTCAGGGGAAGGGGTTGCCGTCGC
GAATGCCCCCCAATACGTTGCATTCGCTTTCCCCTTTCCCAGAGCCTCCCCCATTTCTCTACCCCGTCCCCCACTCCA-T
CGATTTAGGCTACGACAA-TCGAGCGACGGCGGAGACAATGTAGAGGCGGACGTCGGCGACTGCGTGTGGGGATCCCTCT
CGTGGCTTCATGCTAGGTCATGGATGATGACGCGGAGGCGGCGTTGTGGGCAAGGGCGTACGCAGGGATGCGGAGGCGGC
TTCTCTCGACGATGGCATTCATCGCTACCCTG-------------------------GTTGATTTGGGCGAGGTCGACAT
CTCGCAGGTGATAGAGGCACTGGTGGACATGGACGGCATAGCAGAAGCGGTGCTGCCGACGGTGGACAAGGATGGACACG
GGGGTGCGGAGGTGGTGCTCAATGCCGACTTAGAGTACAAGGAGTATGGCCTCCGAGATCTCTCCTTTTGACATGTTTTT
CCTATCAATCTTTGTTCCCATGCTACTACTACTAGTAAGGTACACGTGCATTGCACACATGAGATTTGGCAACCAAATTA
TGAATAAATACCACATTATATATAGCATGTAAGTTTTGAGTCATTTATGCATGATGTAGATGTTCATTTAATTCTTATAG
TTCATCTCATTCAAAATCATTTAGTTTTAACAAAAAAGCTACTTCCTCCGTTTCAGTTTATAAGTCCTGTGC
>chr3B_1
AAAAAGGGTCATGCCATGCTCGACCTTAAGGCTTGGCTTCGGAGATCAATCTTGTTTCATGGCGGGCCGAAGGCTGGCCC
GACACTTTTTTCACGTGTCGTGCCCGGCCCATGCCATG------------------------------------------
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----------------------------------------------------------------CCGAAAATTCGTGCCT
GCAGGCAGGCCTGCGAGGCACAA------CCCATATGGCCATGTTTGCCCGGCGGCCGTCCTCCTCTTTCGTTCTTCCTC
GCGTTTCTTGTTTCGAGCACGACTCTATGCTGTCCCGTGGGGTGCGAGGGTCGCGCCCCACAACTCATCCTCATATCCTT
CACTCCCCCCTTCTTCCACATATTTCTCTTTTCAATCCACCTCGCTATCGAGTGGTCGAGCTCTCCTTCTTCCAACAAAT
GCCCACTGTTGCAAATGACTAAGCGGGGAACAGTGTCTTGATAAAGTAACCCCTCTAATCTCGGGGTGCTACCTGTCATG
TGACAAATTATCTGGCAATCCTAATTTGGAAAAACCAGATGGGTGATCATCATATCGAGTTATCGATTTAATACAAACAC
AAGTTTTTTTCTACTTGTTCAACCGGCTCTCATTTTCGCCCGATTTACATGAAAATTGGCAGGGGGTTCCCTTTGGTTCA
TCTGTGGGAGGTCCACAAAGCTTAAAACCCGAGCGAGGCACAGGTTCTGTTTTTTCACAGTTCAACAAGCACCAATACAT
TTAAAAAAAAACTAGGTTGGCAACACAATGTCTCTTGATCGGTCTCCTCCTTCACTCTTCTTTGCTCCTCCGCAATGTCC
ATCCCTCCTCGTCATCGAGCTCTAGAGAGTCGAAGGCGTGTGTGCTCTCCCTAAGCCCAGTGAGCAAATATTTGTCCATT
AGATTTTTCCAATTTATAAACGTTTCTTATTGGCCTTTATACACTTGTTTCTATAGGCATCCTTTATACACTAGTTTATT
TTGGGAGC-TTTTTTGA-GGGAACGCATACC-TGTTGGGCAGGGCTCACGGGCTGATCACGGGCCGAACCATTGGACTTT
CCTTTCTAG-----------ATGAGTTGGGCCTCAACAGATCCTAATAACGAGCAGTTTAACGTTAGGATTCCGTGGACG
GGAAGGATCCAAATTAGCGCCGATTTATTCTCTTCCATCCGTTGAGGTAACCTACC---ACGGTTTCAAAAGCACCGCCG
CCGCGTTCGCCTCGATCTCCTTCTCCAGGAAACATGAGAGCAGCCGCCGCCGCCTCCGACTGGTCCGGCCTTCTGCCGGA
GCTCCTCGAGGAGATCTCACGACGCGTAGGGGACGTCAAACGCGACCGTGATGCGTTCGCCGCCGTCTGCAGGCCGTGGC
GCCGCGCGTCGAGCGCCACCGGCGCTCGGCTCAACCGCCACGCCCTGCACCTCGTGTCCCTCCGGTCCGGCGCCACCGCC
GTCGACTTCTCCGATCGCGCCGGCGAGGTGAAGAAGACGGTGTACCTTGGGACCGACGCCGGCGGCGCGCGGCCCCACCG
CGTCATCGGCTGCTCCCGGGGCTGGCTCGTCGTCGTCGACAAGTCGTGCGGCGCGTCGCTCCTCGAGCCCGTCGCCGACG
GCAGGCGGCTGCCGCTGCCGGACGTCACGTCGTTCGACTGCGGGTTCATCAGGCCCTTGCTCGCCGACGACCTCGGCGGA
---GGCGTGTGTTTCTCCGTGGACCATCACGCGTATCGGTCACACATCCGGGGCCCTAACAAGAAGGCCCGGCCGTCGCC
TCCCGAGA---CGGTTCCGATCCAGACAATGCGTGACGAGTTCTTCCACAAGGCCGCGCTCGCCGTCTCGGGAGGAGACC
GGCGGGAGAGCTTCACCGTGATGGTGATCCACAGCGGCGGCTCCGGGCTGGCGTTCGCGA-GGCCCGGCGACAAGTGCTG
GACGTCGCTGCGCACGTCGGCGTCCACGCGGTACCAGGACATCATCCACCACGACGGCGCCTTCTACACAATCTCCCGCG
GCGACGGGTCCATCGAGGCCTGGGAGCCGTCGGCGCACGGCG---GCCGCACCCTCAAGCCGCGGCTCGTGACGGGGCCG
GTCATGGCGTGGGAGTTCAAGCGGTGCGTGGAGTTCCACACCGAGACGTTCCGGCAGCAGGCCTACTACGAGGGCGCCAG
GTACCTCGCCGAGCGCGACGACGGCGGCGCCGGCCTTCTCGTGGTGAGCACGGTGGCCATCTTCACCGACGACAACGCCC
TGCGGACCCGGCGCTTCAAGGTGTTCGCCGTGGACGAGCGCGAGGACAGGTGGCGCGAGCTGCAGGACATCGGCGACGAC
GTGGCGCTGCTGGTGGGGATCAACCACGGGAGGCGCGTGTCGACGAGGGAGTACCAATGCATGGAGCCCGGCCGCATCTA
CTACGTGCTCAAGTCGTTCGCGCCCGAGTTCGACGCCATGGATGAAGACGGAGACGACGTGGAGGAGTGCTCCAGGTACG
AGAGCGGGGTGCACGAGCTCCGGACCGGCGTCGCGTCCAGGAAAGCCGTGTTCAGGCATGCCGCCGGCGGTCACCCTGTT
TGGTTCGTGCCTCCCGTTGCTGCTCCTCCCCGCAGGTGAGGTATCAGTGGGTGGCATCCGCGACAACTGACACCACGTCG
ATCGTGCGCATCCAGTAGTTTTGGTGTGGTGAACTGGTTTATCTCTCGTCGGTACTCTTGACTTTTCTCTGTCCATCCAT
CAACTGTGAAAATTATGTGTTTAGAGTTTCAGAAAC---AATTGCTCAAGTATTGTTTTGATCTGTCGAAATTCAAAACC
TACATCTTCCTCCTCGAGTGCGGCGTTGAAAAGGACAGGCTCCATGGAGCCCCTTTTTTCAAAAACAAAATCATAAAATA
TTTAA--AAGTTCCAAAAAATGTTAAACT-TTTTTAGACAAATACATATGCATATTCTTCATGTATGTATAAAGTTTCAT
CAACTAATTTGATTATTTGCATGCTAAATAAAAAGACAAATATCTAGCTCAAATACAACAAAGAGAAAGTTCATTTTAGT
CTGCCTATTTATC---TTTTTGTGTACATCACATATGAACATGTGTTAATGAAATTTTGTACTTG---------CATATA
TACTACAATATA----------------TTTTATCTTCATATTTTTATGTTTTGGCGGCGAAGACTTTTTGAACCATTGG
ATTGAGGAACGAATCCTGAAGAACAGTAATTTTGCCACGTTAGCCCCTTTTTTTTGTTTGGGAAAAGGGGTAGCCATCGC
-AATGCACCCCGCTACGCTATCTTCGCTTTCCTCTTTCCCAAATCCTCCCCCATTTCTCTACCCCGTCCCCCACTCCACT
CGATTTAGGCAACGACTAGTCGGGCGACGGCGGAGACGATGTTGAGGCAGATGCCAGTGACTCTGTGTGGGGATCACTCT
-GTGGCTTCATGCGAGGCCATGGATGACGAGGCGGAAGCAGCACTGC-GGCGTGGGCGGATGCAGGGATGTGGAGGCGGC
TTCACGCAGCGACTATGGTCATCACATCCCTGCTCGCGGTCTCTACTGCGGCGAGCAGTTGATTTGGGAGAGGTTGACCT
CTCGGAGGTTATGGAGGCACTGATGGACATCGATGAAGTAGCGGAGGGGGTGCTGCCGACAGTGGGTGGGGACAGATACG
GGGGTTTGGAGGTAGTGCTCAACGCCGACTTCGGGTACAAGGAGTATGGCCTCTGATATCTTTCTTTTTGATATGTTTTT
CCAGTCGTTCTTTGTTCCCTTGC---------------------------------------------------------
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------------------------------------------------------------------------
>chr3D_1
AAAAACGGTCGTGCCATGCTCGGCCTTAAGGCTTGGCTTTAGAGATCAATCTTGTTCCATGGCGGGCCGAAGGCTAGCCC
GACCCTTTTTTCGCGTGTCGTGCCCGTCCCACGCCATGTCGAAAATCCACGAATCACTAGTTGAGGAGTACTCGTTGCAA
AGATCCCTCCAACTCCCCAGGCTGCGACATGTGGCGTGCTGTGCGCCACTTGTCGCAACCTGGGAGTTTTCCCTTTTTTC
GTAAATCCGTTTATTCAAAACGTTTTCTCTCAAACCGTGCGTCCAAATCTCGAACCACTTCAGCGTTGGATTCCTCGCGT
CGAGATCTTCAAAACTAGGTCCCATCTTGATAGGTTTTGACGAACTTTTTTTTCATGAAAAAACTGGACGAAAAAACCGA
ACCGGGAGCACGGGGTTTTTCCCTTTTTGAAAGAGGCACGCCCGTGCCTCTCACGAAATCACAACTGTGCCCTCGCGAAA
GCAAAACCGTGACTCTCACGGAAGGAAAAAAAGAAAAGAAAACGCATTTTTTCGTTTCCGAGAGGCACGGCCGTGACTCT
CGCGAATTTTTGTTTCCGAGAGGCACGGCCGTGACTCTCGCGAAAGCACAACCGTGACTATCGCGAATTTTCGTTTCCGA
CAGGCACGACCGTGACTCTCGCGAAAGCACAACCGTGCCTCTCGCGGAAGCAAAACCGTGACTCTCGCGAAAGGAAGAAA
AAACCAGAAAACACGTTTTTTTCCCGTTTCCGAGAGGCACGGCCGTGACTCTCGCTAAAGCACAACCGTGCCTCTCGTGG
AAGCAAAACCGTGACTCTCGCGAAAGGAAAAAAAAAACAGAAAACGCATTTTTTTGGTTTGCGAGAGGCACGGCCGTGAC
TCTCGCGAAAGCACACCCGTGCCTCTCTCGAAAGCAAAACCATGACTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAACACGTT
TTTTTTTCCGTTTCCGAGAGGAACGACCGTGACTCTTGCGAAAGGAAAAAAAATAGAAAACACGTTTTTTTCCGTTTCCG
AGAGGCACGACGGTGACTCTCGCGAAAGCAAAACCGTGCCTCTCTCGAAAGAAAAAAAAAAGATAACGCGTTTTTTCGCC
CAAAAAAGAATCTTGATTTTTTTATCGAGAAGCTAAGGAAGACCGGTGGAAAACCAGAACGTCGAAAAAAAACATTTAAA
AAGCCGAAAACGCGTGCGAAAAAATAATAAAAAACAAAATCCGGAGGAAGCGCCCAGAACACGACACGTGGTGAATGGCT
GAGAGCGCCAAGTGGCGCTGATCGTTGCGAGACTCCCGAAGGAGCGCTCATTAACTAGCTCCTCTCGAAAATCCATGCCT
GCAGGCAGGCCCAAGAGGCACGA------CCCATATGGCCATGTTTGCCCGGCGGCCCACCTCCTCTTCCCTTCTTCCTC
GCATTTCTCGTTTCGAGCACGAGTCTA------------------------CGCGCCCCATGACTCATCCTCATCTCCTT
CACTCC-CCCTTCTTCCACATATTTCTCTTTTCAATCCACCTCTCTACCGGGCGGTCGAGCTCTCCTTCTTCCTACCAAT
GCCCACTGTTGCAAATGACTAAGTGGGGAAGAGTGTCCTGATAAAGCAATCCCTCTAATCTCGGGGTGCTACCCATCATG
TGACAAAATATCTGGCAATCCTAATTTGAAAAAACCAGATGGGTGACCGTCA--------CATCGATTTAATTAGAACAC
AAGTGTTTCCC-ACTGGTTCAACCGGCTCTCATTTTCGCCCGATTTACATGAAAACTGGCAGGGGGTTCCCTTTGGTTCG
TTTGTGGGTGGTCCACAAAGCTTAAAGCACGACCAAGGCGCAAGTTTTGGTTTTCCCCAGTTCGACCAGCACCGGTACAT
TTT-AAAAAAACTAGGTTGGCAACACAATGTCTGTTGATCGGTCTTCTCCTTCGCTCTTCTTTGCTCCTCCGCAATGTCC
ATCCCTCCTCGTCATCGAGCTCTAGAG--TCAAAGGCGTGTGTTCTCTCCCTAAGCCCAGTGAGCAAATATTTGTCCATT
AGAT-TTTCCAATTTACAAACTTTTCTTAATAGGCTTTATACACTTGTTTCTATATGCATCCTTTATACACTTGTTTATT
TTGGGAACTTTTTTTGA-GGGAACACATACC-TGTTGGGCAGGGCTCCCGGATTGATCACGGACCGAACCATTGGACTTT
CCTTTCTACTCGTACTCTATATGAGTTGGGCCTCAAAAGATCCTAATTATGAGTAGTTTAACGTTAGGATTCCGTGGACG
GGAAGGATCAAAATTAGCGCCGATTTATTCTCTTCCATCCGTTAAGGTAACCTACGATTACGGTTTCAAAAGCACCGCCG
CTGCGCTCGTCTCGATCTTGTTCTCCAGGAAACATAAGC---GCCGCCGCCGCCTCCGACTGGTCCGGCCTTCTGCCGGA
GCTCCTCGAGGAGATCTCGCGCCGCGTAGGCGACGTGAAACGCGACCGCGATGCGTTCGCCGCCGTCTGCAGGCCGTGGC
GCAGCGCGTCGAGCGCCACCGGCGCTCGGCTCAACCGCCACGCCCTCCACCTCGTGTCCCTCAGGTCCGGCGCCACCGCC
GTCGACTTCTCCGACCGCGCCGGCGAGGTCAAGAAGACGGTGTACCTTGGGAGCGACGCCGGCGGCGCGCGGCCCCACCG
CGTCATCGGCTGCTCCCGGGGCTGGCTCGTCGTCGTGGACAAGGCGTGCGGCGCGTCGCTCCTCGAGCCCGTCGCCGACG
GCAGGCGGCTCCCGCTGCCGGACGTCACGTCGTTCGACTGCGGGTTCATCAGGCCCTTGCTCGCCGACGACGACGGCGGG
---GGCGCGTGTTTCTCCGTGGACAATCACGCGTATCGCTCGCACATCCGGGGCCCTAACAAGAAGGCCCGGCCGTCGCC
TCCCGAGACGACGGTTCCGATGCAGGCCATGCGCGACGAGTTCTTCCACAAGGCCGCGCTCGCCGTCTTCGGAGGAGACC
GCCGGGAGAGTTTCACCGTGATG---------------------------------------------------------
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>chr3D_1800
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-------------------GATGGTGATCCACAACGGCGGCTCCGGGCTGCCGTTCGCAAGGGCCCGGCGACAAGTGCTG
GACGTCGCTGCGCACGTCGCCGTCCACGCGGTACCAGGACATCATCCACCACGACGGCGCCTTCTACACAATCACCCGCG
GCGACGGGTCCATCGAGGCCTGGGAGCCGCCGGCGAACGGCGACCGCCGCACCCTGAAGCCGCGCCTCGTGACGGGGCCG
GTCATGACGTGGGAGTTCAAGCGGTGCGTGGAGTTCCACACCGAGACGTTCCGGCAGCAGGCCTACTACGAGGGCGCCAG
GTACCTCGCCGAGCGCGACGACGGCGGCGCCGGCCTTCTCGTGGTGAGCACGGTGGCCATCTTCACCGACGGCAACGCCC
TGCGGACGCGCCGCTTCAAGGTGTTCGCCGTCGACGAGCGCGAGGACAGGTGGCGCGAGCTGCAGGACATCGGCGACGAC
GTGGCGCTGCTGGTGGGGATCAACCACGGGAGGCGCGTGTCGACCCGGGAGTACCAATGCATGGAGCCGGGCCGCATCTA
CTACGTGCTCAAGTAGTTCGCGCCCGAGTTCGACGCCATGGATGAGGACGGAGACGACGTGGAGGAGTGCTCCAGGTACG
AGAGCGGGGTGCACGAACTCCGGACCGGCGTCGCCTCCAGGAAAGCGGTGTTCAGGCATGCCGCCGGCGGTCACCCTGTT
TGGTTCGTGCCTCCAGTTCCCGCTGCTCCCCGCAGGTGAGGGAGCAG----------CCGTGACAACTGACACCACG---
-TCGTGCGCATCCAGTAGC----------------------------------------GACTTTTCT------------
---CTGTGAAAATTATGTGTTTAGAATTTCAGAAAT---AATTGTTCAGGTATTGTTTTGATCTGTCGAAATTCAAAACC
TACATCTTCCAAGTGTTTAACAGTCCAAAAAAA---------------------------AATATCAAACTCATAAAGTG
TTTAA--CAGTCCAAAAAAAAATATCAAACTTTTTCTACAAATACATATGCATATTCTTCAAGTATGTATAAAGTTTCAT
CAACTAATCTGATTATTTGCATGCTAAATAAAAAGACAAATATCTGGCGCAAATACAACAAAGAAAAAGCTCATTTTATT
CTGTGTATTTATC---TTTTTGTG----TCACATATGAATATGTGTTCATGAAATTTTGTATGTTTAGATATACTATATG
CACTACAAATTATGTCTATGTGTATGT-TTTTTTCTACATATTTTTATGTTTTGGCGGCGAACACT--------------
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>SNPs
-----S-------------------------------------------------S------------------------
----S--S---------S----SS--------------------------------------------------------
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------------------------------------------------------------------------------S-
S----------------------SSSSSS-------------------------S-------------------------
-------------------------------S--SSS-S-SSS-SSSSS------------------------S------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S----------------------------S--
---------------------------------------S----------------------------------------
---S----------------------------------------------------------------------------
---------S-----------------------------S--------S----------------S--------------
------------------------------------S-----S-------------------------------------
-------S-------------S---------------S------------------------------------------
--------------SSSS-------------S------------------------------------------------
----S----------------------------------S----------------------------------------
---------------------------------------S-------S--------------------------------
--------------------------------------------------------------S---S----------S--
---------------------S------------------------S-------------------------S-------
-------------------------------------------------------------SS-S---------------
-----------------------------------------S--------------------------------------
--------------------S--------------------S------------------------------S--S----
-----------------------------------------------S--------------------------------
SSS---------------------------------------------------------------SS------------
---------------S----------------SS----------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
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-------------------------------------S------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------S-----------------------
---------------------S---------------------------S------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
-SS-------S---------------------------------------------------------------------
------------------------------------SSS-----------------------------------------
S--------------------S------S--SSS------------------------------------------S-S-
S-SSSSS-----S----------S--------------------------------------------------SS--S-
---------------------------------------------------------------S----------------
-------------SSS-----------S------------------------------------------------S---
-----S----------------S----S----------------------------------------------------
-----------------------S--S--S--S-------------------------SS--SS-------S---S----
S-----S----SS----S-SSS----------S--------S-S------------------------------------
----------S-----S-----S--------------S----S-----S--S-S-S-S----SS-----------S----
S------------S---S---------S--S-----S--S--SS--SS---SS-----S-S---------S---------
---S-S-SS---SSSSSS-----S-SS-----------------------------------------S-----S---S-
----S----S--S---------S-------S--S-SSS----S--S-S------------S----SSSS---SS--S---
-----SS------S--------S--------S-S-------------------S--S----S--S------S--------
--SS--SS-----------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1754
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------------------------------------------------------GCCCCATGACTCATCCTCAG------
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>reverse_3234
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AGACGAGTTCTTCCACAAGGC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_2742
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TCCTCGAGGAGATCTCACGG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_4898
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TCATGGATGATGACGCGGAG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
