>input_sequence_44697
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------ATGGACATGCCGGGGGAGGACGAGTACGTCTACGGCTAC
GAGTACGAGTTCGACTTGGAGAACCCCTTCACGAGCCCCGCCGACGAGCCGATCGCCAGCCTCCTCGACGCCGAGGCCCA
CCACGCGCCCTCCGTGTCCGCCGCCGCCTCCGCCGTCCGCCGCGACGCCGCCCGATTCATCTCCAAGGTACGGGTCTTCC
T------------------TCATGGGGTTCTTTCTCGCGAGCGGTTCGTCCCCTTCCCTTTCTGATCCGATCAGCCTCGG
TTGGCCCAGGTGCGGTACGACGGGGAGCTCGCCGTGCACCCGCGGGTGGCCTACCTCGCGCTGAACTACGTGGATCGCTT
CCTCTCCAAGGGCCAATTGCCGGTAAGAAGGCGAAAGATGGTGTCTTTCTTTCAAGAATCTACAATATTTCGGTCTGATC
TGACAGCCCGTGGTTCTGCCCCGCAGTTCGAGCGCAAGCCATGGGCGCCGCGGCTGCTCGCCATCAGCTGCCTCTCCATC
GCCGCCAAGATGCAGCGCGTCGACGCAATCTCCATGGACTACATCCAAGTACGCTGATTATTGCCCTTTTCCTTTTCGGT
TGCTCTGTCGCGAGTTCATATGGGGATTAGTTGTCAATCAAGCGTGTGTTGGCGTGCGTACGTGGCTTGCAGAGGGACGA
GGAGTTCATGTTCGACGCGGCGACCATCCGGCGCATGGAGCGGGTGGTGCTGGGCGCGCTGGAGTGGCGCGCGCGCTCCG
TGACGCCGCTCGCCTTCCTCGGCTTCTTCCTCTCGGCGTGCTTCCCTCCGCCGCGGCACCCGGCCCTGCTGGACGCCGTC
AAGGAGCGCGCCGTCGACCTCCTCCTCCGTGCCCAGCCCGGTACGTGCGCGCGCTCCTCCGGCATGCCAATGCCAAGCAA
ACCCGAACGCTTTGCCCTCAGATTCATCGCCCGCTCAACCGCTGATCTCTTCCCGTCCTGCAGAGGTGAAGATGGCGGAG
TTCTCGCCGTCCGTGGTGGCCGCGTCGGCGCTGCTGGCCGCCGCCGGAGAGATCGCCGTCGCCCACCTCCCCGCCTTCCA
AGCCGCCGTGGCCGCTTGCCCCTTTGTAAATAGCGTGAGCATGATATTATAAAACCGCACATTTTTGTTCTCCACTGCCC
ACTAAA--CCCCCCCTTAATTCT-------------------CCCAAGTAACCACCACCTGTCATGTCACGCCACGCCAA
ACACACTCCAGATCCTTTGGGAGAGGAGACCTTGGCCAC----------CCCAACTGTTCGCCTTTTCGTAGTTATTTTC
CTCGTGAAACGCGCCCGAGCGCAGCGATTGACCCGCACTGCTGATAAGCTTTCTTGTTTTCTCGTCGGAGTTGATAATTT
CGTGCGCTCCTCTCACAATGATCAACCCTCTGTCCAGGAGAAGCTACGGGAGTGCGGCGAGGTGATGGCGGCGGTCTGCG
GTGTGGTCGG------CGTCGGCGTCGGACCGGCGGCGAGCGCCGAGACGCCGGTGACGGTCCTCGGGCACGGCCACTAC
CGCAGCGCCAGCTCGGAGAGCGACCGGACCGTCGGATCGGCAGCCAACGTCGCCGATGCCAAGAAGCGATGCATGGGCCC
ACCTTCCCAGTCCCAGTGGGGGTAAGCGGCGTGCGGTGCGGCAGGACCCCATGGGGCGCGACAGCTGGAAGAGCCGGGAA
TTTACTCTTGCCCTGTTG-------TTCATTTTTACCTTTTC---CGATTTATTTTCCATTTTAA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>chr2A_1_TraesCS2A01G208300
GGATGGATGGATCTTGACTACGAACAACTGGATTTAGTTGACGATTGAGCTATGTGCCCTTTCAAAGGCGAGGTGAGGGA
GAGGGGGGAAGGACTCTTCTCGCAAATCTCGCCGCCTCCCTCTGAAACCGCCACTGTGAGCAGTTGCTGCATCCGCATGA
TCTCCTTCTTTAAAGATTGAAACGCTAAGAATTAGCATCATCTCGCGATAGAGATTTGCCCTATAATTTTTTTGTTGGGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAATGGCGTCG
ACATTTTTAGCAAGAATCACCATACCACGTTTCTTCACATGGATGAGAGCTGTCAAAAGACAAAACGCATGGGGCCGCCG
CGGAGTAAATCGTCTGGTCTCACAGGGTCACGCACAAGCGCAGCGATCATTTGGCATCCATGACAGGTGGGTCGCCACCA
GAAACTTTCTTCCTCGTCCTCTCTTTCCTCCATGCCCTCCCCC-TCCTCCTGTCTCGGGCCTCGCCGTCTCCACGATCTT
TACAAAAAGAACCCCAAATCAACACCTTTTGTGCCATTGTCCCCGGACCCCGACGGTTCCCTTATTAAAGGCCATCTTCC
CAACCAGACACAGCTAGTACTAGCACACTGCGTAGCAGGCAGCAATGGTGGCTTCCTCTCCCCCATAAAGCCACAGCCTG
CGCTTCTTGGCGTGTTCTTGCCCCTTCCTCGTACGGACGCCATGGACATGCCGGGGGAGGACGAGTACGTCTACGGCTAC
GAGTACGAGTTCGACTTGGAGAACCCCTTCACGAGCCCCGCCGACGAGCCGATCGCCAGCCTCCTCGACGCCGAGGCCCA
CCACGCGCCCTCCGTGTCCGCCGCCGCCTCCGCCGTCCGCCGCGACGCCGCCCGATTCATCTCCAAGGTACGGGTCTTCC
T------------------TCATGGGGTTCTTTCTCGCGAGCGGTTCGTCCCCTTCCCTTTCTGATCCGATCAGCCTCGG
TTGGCCCAGGTGCGGTACGACGGGGAGCTCGCCGTGCACCCGCGGGTGGCCTACCTCGCGCTGAACTACGTGGATCGCTT
CCTCTCCAAGGGCCAATTGCCGGTAAGAAGGCGAAAGATGGTGTCTTTCTTTCAAGAATCTACAATATTTCGGTCTGATC
TGACAGCCCGTGGTTCTGCCCCGCAGTTCGAGCGCAAGCCATGGGCGCCGCGGCTGCTCGCCATCAGCTGCCTCTCCATC
GCCGCCAAGATGCAGCGCGTCGACGCAATCTCCATGGACTACATCCAAGTACGCTGATTATTGCCCTTTTCCTTTTCGGT
TGCTCTGTCGCGAGTTCATATGGGGATTAGTTGTCAATCAAGCGTGTGTTGGCGTGCGTACGTGGCTTGCAGAGGGACGA
GGAGTTCATGTTCGACGCGGCGACCATCCGGCGCATGGAGCGGGTGGTGCTGGGCGCGCTGGAGTGGCGCGCGCGCTCCG
TGACGCCGCTCGCCTTCCTCGGCTTCTTCCTCTCGGCGTGCTTCCCTCCGCCGCGGCACCCGGCCCTGCTGGACGCCGTC
AAGGAGCGCGCCGTCGACCTCCTCCTCCGTGCCCAGCCCGGTACGTGCGCGCGCTCCTCCGGCATGCCAATGCCAAGCAA
ACCCGAACGCTTTGCCCTCAGATTCATCGCCCGCTCAACCGCTGATCTCTTCCCGTCCTGCAGAGGTGAAGATGGCGGAG
TTCTCGCCGTCCGTGGTGGCCGCGTCGGCGCTGCTGGCCGCCGCCGGAGAGATCGCCGTCGCCCACCTCCCCGCCTTCCA
AGCCGCCGTGGCCGCTTGCCCCTTTGTAAATAGCGTGAGCATGATATTATAAAACCGCACATTTTTGTTCTCCACTGCCC
ACTAAA--CCCCCCCTTAATTCT-------------------CCCAAGTAACCACCACCTGTCATGTCACGCCACGCCAA
ACACACTCCAGATCCTTTGGGAGAGGAGACCTTGGCCAC----------CCCAACTGTTCGCCTTTTCGTAGTTATTTTC
CTCGTGAAACGCGCCCGAGCGCAGCGATTGACCCGCACTGCTGATAAGCTTTCTTGTTTTCTCGTCGGAGTTGATAATTT
CGTGCGCTCCTCTCACAATGATCAACCCTCTGTCCAGGAGAAGCTACGGGAGTGCGGCGAGGTGATGGCGGCGGTCTGCG
GTGTGGTCGG------CGTCGGCGTCGGACCGGCGGCGAGCGCCGAGACGCCGGTGACGGTCCTCGGGCACGGCCACTAC
CGCAGCGCCAGCTCGGAGAGCGACCGGACCGTCGGATCGGCAGCCAACGTCGCCGATGCCAAGAAGCGATGCATGGGCCC
ACCTTCCCAGTCCCAGTGGGGGTAAGCGGCGTGCGGTGCGGCAGGACCCCATGGGGCGCGACAGCTGGAAGAGCCGGGAA
TTTACTCTTGCCCTGTTG-------TTCATTTTTACCTTTTC---CGATTTATTTTCCATTTTAATCTTCTCGACTCGAG
GCGAAGTAGTAGGCAGCGATGCAGATTCGAGAGAACCGCTGGTGGTAGCTGTCATTTACTAATTGCTTTTTTTTTTGTTT
CCCTTGGCTTTTCTTTTGTTCCCTGGAGTGATTTTTGCGGCAGTCGTAGTAGTGGTAGCAGCAGATGCTAGGCTGGTATT
TTCCCGTAAAAGAAAAAGATGCTAGGCTGGTGGATGAATATATTGGGATGTGGAGTAGTGGTAAACTACAATGTTTCGGT
GCTGCAAAATAAGACCAAAATCATGTGCTCATTACTGATCTTCT-CTTTTCTGCCCGTTTCTCTTTTGAAAAGTCTTCAT
GTACGTCGGATTT-------------------------TGTTCTGGAAACATCTGAGGTTGAGATTCATCTCCGTGTACC
GGTAGAAAACCCAACCCTAGCAGTACGCCAGGGTACTGGGCTCTGTAGATACGTATGAGTACGATAAAAAGAAAGAAAGA
AAATAAGCCAGGGATGGTCAACGGAGAAACGGGCAAATGCCACGTGCCGGGATGGAGACTGGCAGCAGCTGCCGTACTTT
ACCTTTACGGGCAGACCCTCCGCTAGATGGGCTCCACGTGGCCACA--GGGCCGCTGTCCCTCCTGGCTCTCCCGCCTCG
TGCATGCAGCGTGCATGGCGCTGTAGACGTTCATGCGTCAGTAGTATTACTCCTCCTACTG-TACGAAGAGTGCATAGTG
CTACTCGTGACACTGCGTATACGCGTATCTGTTTTTCGAAAGCCGCCGTATACGCGTGCGTATCTGCCCAACGCTGTGGA
CGCAAACGGCTCTCATGTCTCATGACATCAGGCACGAGCATGACCACCATGCCTGTAGGAGCAGCAGTGAGCTTTGCGAA
AGCAG--GCTTACATGTGGGCCCAATCGCTCGGTTTCCGCACGGAAGGAAGGTAATTGCCGGGTCCACGGTAAATCGATT
TCACGCACGCCAGCCAGCTACCGCAAGCTTTGCTTTCCAGGGCGAAAAAGAGACGG
>chr2D_1
GGATGGATGGATCTTGACTACAAACAACTGGATTAAGTTGACGATTGAGCTCTGTGCCCTTTCAAAGGCGAGGCGAGGGG
GAGAGAGAAAGGACTCTTCCCGCAAATCTCGCCGCCTCCCTCTGAAACCGCCATCGTGAGCAGTTGCTGCATTCGCGTGA
TCTCCTTCTTTTAAGATTGAAATGCTAAGAATTAGCATCATCTCGCAATAGAGATTTGCCCTAGAATTTTTTAGGGGGAA
ATGCGCCATAGTTGCAAGGACCTCACCCGCAAAAAAAAAATCACCCGCAAAAAAGAAAAGTTACAAGGATCTCTACTTAT
GTCCACCAAAAATGTGGTGATTAGTGTT----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GTACAATGCCGTCA
ACATTTTTAGGAAGAATTACTATACCACGTTTCTTCACATGGATGAGAGCTGTCAAAAGACAAAACGCATGGGGCCGCCA
CGGAGTAACTCGTCGGGTCTCACAGGGTCACGCACAAGCACGGCGATCATTTCGCATCCATGACAGGTGGGTCGCCACCA
GAAACTTT-TTCCTCGATCTCTCTTTCCTCCATGCCCTCCCCCTTCCTCCTGTCTCGGGCCTCGCCGTCTCCACGATCTT
TACAAAAAGAACCCCAAATCCACACCTTTCGTGCCATTGTCCCCGGACCCCGACGGTTCCCTTATTAAAGGCCATCTTCC
CAACCAGACACAGCTAGTACTAGCACACTGCGTAGCAGGCAGCAATGGTGGCTTCCTCTCCCCCATAAAGCCACAGCCTG
CGCTTCTTGGCGTGTTCTTGCCCCTTCCTCGTACGGACGCCATGGACATGCCGGGGAAGGACGAGTACGTCTACGGCTAC
GAGTACGAGTTCGACCTGGAGAACCCCTTCACGAGCCCCGCCGACGAGCCGATCGCCAGCCTCCTCGACGCCGAGGCCCA
CCACGCGCCCTCCGTGTCCGCCGCCGCCTCCGCCGTCCGCCGCGACGCCGCCCGATTCATCTCCAAGGTA---GTCTTCC
T------------------TCATGGGGTTCTTTCTCGCGAGCGGTTCGTCCCCTTCCCTTTCTGATCCGATCAGCCTCGG
TTGGCCCAGGTGCGGTACGACGGGGAGCTCGCCGTGCACCCGCGGGTGGCCTACCTCGCGCTGAACTACGTGGATCGCTT
CCTCTCCAAGGGCCAATTGCCGGTAAGAAGGCGAAAGATGGTGTCTTTCTTTCAAGAATCCACAATATTTCGGTCTGATC
TGACAGCCCGTGGTTCTGCCCCGCAGTTCGAGCGCAAGCCATGGGCGCCGCGGCTGCTCGCCATCAGCTGCCTCTCCATC
GCCGCCAAGATGCAGCGCGTCGACGCAATCTCCATGGACTACATCCAAGTACGATGATTATTGCCCTTTTCCTTTTGGGT
TGCTCTGTCGCGAGTTCATATGGGGATTAGTTGTCAATCAAGTGTCTGTTGGCGTGCGTACGTGGGTTGCAGAGGGACGA
GGAGTTCATGTTCGACGCGGTGACCATCCAGCGCATGGAGCGGGTGGTGCTGGGTGCTCTGGAGTGGCGCGCGCGCTCCG
TCACGCCGCTCGCCTTCCTCGGCTTCTTCCTCTCGGCGTGCTTCCCTCCGCCGCGGCACCTGGCCCTGCTGGACGCCGTC
AAGGAGCGCGCCGTCGACCTCCTCCTCCGCGCCCAGCCCGGTACGTGCGCGCGCTCCCCCGGCATGGCAATGCCAAGCAA
ACCCGAACGCTTTGCCCTCAGATTCATCGCCCGCTCAACCGCTGACCTCTTCCCTTCC-GCAGAGGTGAAGATGGCGGAG
TTCTCGCCGTCCGTGGTGGCCGCGTCGGCGCTGCTGGCCGCCGCCGGGGAGATCGCCGTCGCCCACCTCCCCGCCTTCCA
AGCCGCCGTGGCCGCTTGCCCCTTTGTAAATAGCGTGAGCATGATCTTATAAAACCGCACATTTTTGTTCTCCACTGCCA
ACTAAA--CCCCCCCTTAATTCTCCACTACTAAATCGAATCGCCCAAGTAACCACCGCCTGTCATGTCATGCCGCGCCAA
ACACACTCCAGATCCTTTGGGAGAGGAGACCATGGCCAC----------CCCAACTGTTCGCCTTTTCGTAGTTATTTTC
CTCGTGAAACGCGCCCGAGCGCAGCGATTGACCCGCACTGCCGATAAGCCTTGTTGTTTTCTCGCCGGAGTTGATAATTT
CGTGCGCTCTTCTCACAATGATTAACCCTCTGTCCAGGAGAAGCTACGGGAGTGCGGCGAGGTGATGGCAGCGGTCTGCG
GCGTGGTCGGCGTCA------GCCTCGGACCAGCGGCGAGCGCCGAGACGCCGGTGACGGTCCTCGGGCACGGCCACTAC
CGCAGCGCCAGCTCGGAGAGCGACCGGACCGTCGGATCGGCGGCCAACGTCGCCGATGCCAAGAAGCGATGCATGGGCCC
ACCTTCCCAGTCCCAGTGGGGGTAGGCGGCGTGCGGTGCGGCAGGACCCCATGGGGCGCGACAGCTGGAAGAGCCGGGAA
TTTACTCTTGCCCTGTTG-------TTCTTTTTTACCTTTTC---CGATTTCTTTTCCATTTTAATCTTCTCGACTCGAG
GTGAAGTAA---GCAGCGATGCAGATTCCAGAGAACCGGTGGTGGTAGCTGTCATTTACTAATTGCTTTTTTTTTTGTTT
CCCTTGGCTTTTCTTGTGTTCCCTGGAGTGATTTTTGCGGCAGTCGTAGTAGT------AGCAGATGCTAGGCTGGTATT
TTCCCGTAAAAAAAAAAGATGCTAGGTTGGTGGATGAATATATTGGGATGTGGAGTAGTGGTAAACTACAATGTTTCGGT
GCTGCAAAATAAGACCAAAACCATGTGCTCATTACTGATCTTTT-CTTT-CTTCTCGCTTCTGTTTTGAAAAGTCTTCAT
GCG---GTACGTGAGATTTTGTATGTTGAAGTTGCCAGTGTTCTGGAAACATCTGAGGTTGAAATTCATCTCCGTGTACC
GGTAGAAAACCC-----TAGCAGTACGCTAGGGTACTGGGCTCTGTAGATACGTATGAGTA-GATGGAAAGAAAGAAAAT
AAG-----CAAGGGTGGTCAACGCAGAAACGGGCAAATGCCACGTGGCGGGACGGAGACGGGCAGCAGCTGCCATGCTTT
ACCTTTACGGGCAGACCCTCCGCTAGATGGGCTCCACGTGGCCACA--GGGCCGCTGTCCCTCCTAGCTCTCCCGCCTCG
TGCATGCAACGTGCATGGCGCTGTAGACGTCCATGCGTACGTACTATTACTCCTACTACCACTACGAAGAGTGCATGGTG
CTACTCGTGACACTGCGTATACGCGTATCTGTTTTTCGAAAGCCGCCGTATACGCGTGCGTATCTGTCCAACGCTGTGGA
CGCAAACGGCTCT-------CATGACATCAGGCACGAGCATGGCCACCATGCCTGTAGGAACAGCAGTCAGCTTTGGGAA
AGCAG--GCTTACATGTGGGCCCAGGTGCTCGGTTTCCGCACGGAAG----GTAATTGCCGGGTCCACGGTAAATCGATT
TCACGCACGCCAGCCAGCTGCCGCAAGCTTTGCTTTCCAGGGCGGAAAAGAGACGG
>chr2B_547
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GTACAATGGCGTCA
ACATTTTTAGCAAGAATTACTATACCACGTTTCTTCACATGGATGAGAGCTGTCAAAAGACAAAACGCATGGGGCCGGCA
CGGAGTAAATCGTGTGGTCTCGCAGGGTCACGCACAAGCGCAGCGATCATTTCGCAGCCATGACAGGTGGGTCGCCACCA
GAAACTTTCTTCCTCCATG----------CCATGCCCTCCC----CCTCCTGTCTCGGGCCTCGCCGTCTCCACGATCTT
TACATAAAGAACCCCAAATCCACACCTTTTGTGCCATTGTCCCCGGACCCCGACGGTTCCCTTATTAAAGGCCATCTTCC
CAACCAGACACAGCTAGTACTAGCACACTGCGTAGCAGGCAGCAATGGTGGCTTCCTCTCCCCCATAAAGCCACAGCCTG
CGCTTCTTGGCGTGTTCTTGCCCCTTCCTCGTACGGACGCCATGGACATGCCGGGGGAGGACGAGTACGTCTACGGCTAC
GAGTACGAGTTCGACCTGGAGAACCCCTTCACCAGCCCCGCCGATGAGCCGATCGCCAGCCTCCTCGACGCCGAGGCCCA
CCACGCGCCCTCCGTGTCCGCCGCCGCCTCCGCCGTCCGCCGCGACGCCGCCCGATTCATCTCCAAGGTACGGGTCTTCT
TATGTGCTGTTCGTGTTCGTCACGGGGTTCTTTCTCGCGAGCGGTTCCTCCCCTTCCCTTTCTGATCCGATCAGCCTCGG
TTGGCCTAGGTGCGGTACGACGGGGAGCTCGCTGTGCACCCGCGGGTGGCCTACCTCGCGCTCAACTACGTGGATCGCTT
CCTCTCCAAGGGCCAATTGCCGGTAAGAAGCCGAAAGATGGTGTCTTTCTTTCAAGAATCTACAATATTTCGGTCTGATC
TGACACCCCGTGGTTCTGCCGCGCAGTTCGAGCGCAAGCCATGGGCGCCGCGGCTGCTCGCCATCAGCTGCCTCTCCATC
GCCGCCAAGATGCAGCGCGTCGACGCAATCTCCATGGACTACATCCAAGTAGGATGAGTATTGCCTTTT--CTTTTCGGT
TGCTCTGTCGCGAGTTCATATGGGGATTAGTTGTCAATCAAGTG----------TGCGTACGTGGGTTGCAGAGGGACGA
GGAGTTCATGTTCGACGCGGTGACCATCCGGCGCATGGAGCGGGTGGTGCTGGGCGCGCTGGAGTGGCGCGCGCGCTCCG
TTACGCCGCTCGCCTTCCTCGGCTTCTTCCTCTCGGCGTGCTTCCCTCCTCCGCGGCACCCAGCCCTGCTCGACGCCGTC
AAGGAGCGCGCCGTCGACCTCCTCCTCCGCGCCCAGCCCGGTACGAGCGCGCGATCCCCCGGCATGCCAATGCCAAGCAA
ACCCGAACGCTTTGCCCTCAGATTCATCGCCCGCTCAACCGCTGATCTCTTCCCGTCCTGCAGAGGTGAAGATGGCGGAG
TTCTCGCCGTCCGTGGTGGCCGCGTCGGCGCTGCTGGCCGCCGCCGGAGAGATCGCCGTCGCCCACCTCCCCGCCTTCCA
AGCCGCCGTGGCCGCTTGCCCCTTTGTAAATAGCGTGAGCATGATCTTATAAAACCGCACATTTTTGTTCTCCACTGCCC
ACTAAACCCCCCCCCTTAATTCTCCACTACTAA-TCGAATCACCCAAGTAACCACCAGCTGTCATGTCATGCCACGCCAA
ACACACTCCAGATCCTTTGGGAGAGGAGACCTTGGCCACCCTGTTTACTCCCAACTGTTCGCCTTTTCGTAGTTATTTTC
CTCGTGAAACGCGCCCGAGCGCAGCGATTGACCCGCACTCCTGATAAGCTTTCTTGTTTTCTCGCCGGAGTTGATAATTT
CGTGCGCTCTTCTCACAATGATTAACCCTCTGTCCAGGAGAAGCTACGGGAGTGCGGCGAGGTGATGGCGGCAGTCTGCG
GCGTGGTCGGCGTCGGCGTCGGCGTCGGACCGGCGGCGAGCGCTGACACGCCGGTGACGGTCCTCGGGCACGGCCACTAC
CGCAGCGCCAGCTCGGAGAGCGACCGGACCGTCGGATCGGCGGCCAACGTCGCCGATGCCAAGAAGCGATGCATGGGCCC
ACCTTCCCAGT------GGGGGTAGGCGGCGTGCGGTGCGGCAGGACCCCATGGGGCGCGACAGCTGGAAGAGCCGGGAA
TTTACTCTTGCCCTGTTGTTCTTCTTTCCTTTTTTCCTTTTATTTCGATTTCTTTTCCATTTTAATCTTCTCGACTCGAG
GTGAAGTAA---GCAGCGATGCAGATTCGAGAGAACCGGTGGTGGTAGCTGTCATTTACTAATTGCTTTTTTTTGT-TTC
CCTTTGGCTTTTCTTTTGTTCTCTAGAGTGATTTTTGCGGCAGTCGTAGTAGT------AGCAGC---------------
----------------AGATGCTAGGCTGGTGGATGAACATATTGGGATGTGGAGTAGTGGTAAACTACAATGTTTCAGT
GCTGCAAAATAAGACCAAAACCATGTGCTCATTACTGATCTTCTCCTTT-CTGCTCGTTTCTGTTTTGAAAAGTCTTCAT
GTAGTAGTACGTGGGATTTTGTATATTGAAGTTGCCAGTGTTCTGGAAACATCTGAGGTCGAAATTCATCTCCGTGTACC
GGTAGAAAACCC-----TAGCAGTA--------------------------CGTATGAGTA-GATAGATAGAAAGAAAGA
AAATAAGCCAAGGGTGGTCAACGGAGAAACGGGCAAATGCCACGTGGCGGGAGGGAGACTGGCAGCAGCTGCCATACTTT
ACCTTTACGGGCAGACCCTCCGCTAGATGGGCTACACGTGGCCACAGAGGGCCGCTGTCCCTCCTGGCTCTCCCGCCTCG
TGCATGCAGCGTGCATGGCGCTGTAGACGTCCATGCGTACGTACTATTG---CTCCTACTACTACGAAGAGTGCAT----
----TCGTGACACTGCGTATACGCGTATCTGTTTTTCGAAAGCCGCCGTATACGCGTGCGTATCTGTCCAACGCTGTGGA
TGCAAACGGCTCT-------CGTGACATCAGGCACGAGCATGACCACCATGCCTGTAGGAACAGCAGTGAGCTTTGCGAA
AGCAGAGGCTTACGTGTGGGCCCAATTGCTCGGTTTCCGCAGGGAAG----GTAATTGCCGGGTCCACGGTAAATCGATT
TCACGCACGCCAG-------------------------------------------
>SNPs
---------------------S------------S----------------S---------------------S-----S
---S-S-S-----------S---------------------------------SS-----------------S---S---
-----------S----------S-----------------------S----------------S--------S-SS--SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S
-----------------S--S----------------------------------------------------------S
----------------------------------------------------S---------------------------
----------------SS--------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
------------------------------------------S--S-------------------S--------------
--------------------S-----------------------------------------------------------
-S------------------------------------------------------------------------------
-----------------------------S---------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
---------S------------S---------------------------------------------------------
-S------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------------------S-------------------------------------------------------
----------------------------S----------------------S----------------------------
-S------SSSS--------------------------S-----------------------------------------
-----------------------------------------------------SSSSSS---------------------
-----------S--------------------------------------------------------------------
--------------------S----------------------------S----S-------S-----------------
---SSSSSSSS-S-------------------------------------------------S-----------------
------------SSSSS-----------S--------------------------------S----S-------------
----------S--S--------------------------------S-----S--------------------S------
--------------------------------------------------------------------------------
------------------------------S-------SS---S----------------S---------------S---
------------------------------------------------------------------S-------------
-------------SSSSSSS----------------------------------------S-------------------
--------------------------S--------------------SSSS-----------------------------
-------------------S------------------------S-----------
>forward_80
------------------------------------------------------------TTCAAAGGCGAGGTGAGGGA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>reverse_1056
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TTGGAGAACCCCTTCACGAG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_134
--------------------------------------------------------------------------------
-----------------------------------CTCCCTCTGAAACCGCCAC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_1666
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CTTGCAGAGGGACGA
GGAGT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_1056
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GCTAC
GAGTACGAGTTCGACT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_2423
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CAACCCTCTGTCCAGGAGAAG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_2230
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ACCACCACCTGTCATGTCAC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_3728
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------GAAGGTAATTGCCGGGTCCA-------------
--------------------------------------------------------
