>input_sequence_44644
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----------------ATGGCAGCGCACAAGCGGCTCCACGACGGGTTCGAGCAGGACCCCGACCAGCCCGAGAAGAAGC
GGATGGAGCGGTCGGTCTCGTTCTCCACGTGAGCTTCCTTCCAACCCGCCGCCGCTTGGT----------TCTTGTTCAT
CCATGGAGGTGTTTGCTGATTCCATGGCGTGCTTGTGT-TTGGGGTTGCAGGGTGATCCGGGAGGCCATGGTGATGAAGC
AGGTGCAGAGTGTGTTCCTGGTGCTGGAGCCTCTCCTGCGCCGAGTGGTAAGCAGAGCCGTCCACCAGATTGCTGCTTGT
CTCGCTCGATGCTTGCTCTGTTCTTGGAA---TCCAGCGTTCTGATCGATTGCTCTGCTTCTTGATGATGGCGCGCGTGC
AGGTGCAGGAGGAGATCCAGGCGGGGCTGGTGCGCAGCCCGCGGTACATCGAGAGGTCCTCGCCGGAGACGCCGCCGGCG
GCGGAGCGGCCCGCGTTGAGGCTGGCGTTCCTCAACCCGCCGATGCTGCCGATCTTCACCGGCAGCAAGATCGAGGACGT
GAACGGCGAGCCCCTCCAGGTCATCCTCGTCGACGCCGACACCGGCTCGCCCCGCGGCGCGCTCCCGCAGTTCATGCGCG
TCGAGCTGGTGCCGCTCTTCGGCGACTTCCCGCCGGACGGCCGCGAGGAGTGGACGGCCGGCGAGTTCGCCCGCGGCGTC
GTCAAGGAGCGCGCGGGGAAGCGCCCGCTCCTCACCGGCGACGTCGGCCTCACCATGCGTGACGGGCGCGCCGTCGTGAA
CGACCTCCAGTTCACCGACAACTCCTCCTGGGTCCGCTGCCGCAAGTTCCGCATCGGCGCGCGCGTGGTGCCGGGAAGCT
ACGAGGGCGCCAGGGTCGCCGAGGCCATGACCGAGGCCTTCAACGTCCGCGACCACCGCGGCGAACGTACGTCGACTTGA
ACTCCGATCCCTCTCTGTTTTTCCCTGAACATTC-----TGAACTGCGCGTGCTCATTCTGTCTTGA---TACGCATGCA
GTTTACCGGAAGCACTACCCGCCGGCGCTCACCGACGACGTGTGGCGGCTGGAGAAGATCGGCAAGGAGGGTGCCTTCCA
CCGGAAGCTGCGGCAGAACGGCGTGGAGACCGTGCAGGAGTTCGTGCGGATGCTCACCGTGAGGCCGGAAATGCTGCGCG
CGATGATGGGCGACGGCATGACGGACCGCATGTGGGAGGTGACCACGAGCCACGCCAGGACGTGCGACGCCGGCGACAAG
GTGTACGCGTACGCCGG---GCAGCACGGCGCCACCGTCTACGTCAACTCCCTCTGCCAGCTGGTCCGGCTCGAGTTCGC
CGGCGTCGAGTGCGCGGCGCAGCAGCTCACCAGGGCCCAGAAGGCGTACGTGCACCAGCTGTGCGTGGAGGCGTTCGAGC
AGCGGCACAGCCTCCAGGAGGCGGAGCCCCTGCCCGCCGCCATGCTCCTCCACGCCAGCAGCAGCAGCAGCAGCCTC---
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------------------------CCAATGCTGCAGAGTAAGCAACACATCCTCTGACCAGAATTCCTTCTGCTCCTGAA
A-ATGCTCTGCTTCTCTGAATTCTGACCA--------------AAACCTTCCTC-TTTCAGACGCAGCGCCGGTCACGCC
GCCGCCCCTTCCGGCGACGCCGCTCTGGTTCCAGGGAAACCAGGAGCTGGACCTCCAGATCGTCGACGAGCTCTCCGGCG
GCCAGGGCAACTTTGGCTTCCACATGTTCCAGAGCAACTTCGGCTA---------------A------------------
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>chr3D_1_TraesCS3D01G041800
ACATCTACAATACTTAAACTATATAATATCAAAATACGTCTCATGATGCATCTGATAATATTGATTTCATGTTGTGAATG
TTCATATTTTTTAATATAAAGTTAGTCAAACTTCACAAAACTCGACTTTGACCAAACCTTATATGTGGACTAAAAAGAAA
CCGAGGGAATATGTGAACAAATTAAAGTCATTGAGTGCTCATAGCATCTAGAA---------------------------
-----------------------------CTCACATGTCTTGTCCTGATCAATAAGTGGTCATGACAAGACATGTGAGTC
---------------------------------------ATGATAATATCTACAAAAGAATTGAAGTCAGTGAGTACTCG
TAGCATCTAGACCTCACATGGCTTGCCATGAGTGGTCCATGTGAGGCCTAAATACCACAGGTACTCAATGCTTCAATGCT
CTTTTTTTGGAATAGGAGGATTACCCCCGGATTCAATGCTCATAAGAATATCTGAACATCTCGAAACATTTTGGCTCACT
T-----TTTTTTTCCGTGAACGTTGCATCCCCTCAAATTTACCACGAGCAAAAGTGTCAACGAGCCTCACATGTTTCACT
CATGA----TGAAATCCGAGCATATGCTCGAAAACA--CATTTGTTAGCATCTGAATATTGTTACCGGCGTACA-AACGA
CGGCCGCTTGTGCGCCGCACGCACCGAAAGCGTACGCCGGAGGGCTCCGCCGGCGGCGACGCGCGTTGAGAGGGACTTGA
CCATGCATCGTGAGCCAGTCTGTGACATCGGGCCATTACATCACTCGGGCTCGGCCAC-------TCCGAAGTCCGAACT
GAAGCGAAGCCTTCTTCCTCACACCTTCCGGGAACCTTCCCCTCACCTTCCCGCCCCCTCCGGCATTGCGGCGGGCTATA
TAAGCCGGCCAACCCCTCGTCCTCTCGAGGCAAAACACACCCACACATCCACCCTCTCTCCCTCTTCT------CCTTCT
TCCACTTCCAGAAAATATATACGCCG----AGGAGGAGGAGAAAGCGAAAGAAACACCAG------------TGAGTAGC
GGCGCCGGCGATCGACATGGCAGCGCACAAGCGGCTCCACGACGGGTTCGAGCAGGACCCCGACCAGCCCGAGAAGAAGC
GGATGGAGCGGTCGGTCTCGTTCTCCACGTGAGCTTCCTTCCAACCCGCCGCCGCTTGGT----------TCTTGTTCAT
CCATGGAGGTGTTTGCTGATTCCATGGCGTGCTTGTGT-TTGGGGTTGCAGGGTGATCCGGGAGGCCATGGTGATGAAGC
AGGTGCAGAGTGTGTTCCTGGTGCTGGAGCCTCTCCTGCGCCGAGTGGTAAGCAGAGCCGTCCACCAGATTGCTGCTTGT
CTCGCTCGATGCTTGCTCTGTTCTTGGAA---TCCAGCGTTCTGATCGATTGCTCTGCTTCTTGATGATGGCGCGCGTGC
AGGTGCAGGAGGAGATCCAGGCGGGGCTGGTGCGCAGCCCGCGGTACATCGAGAGGTCCTCGCCGGAGACGCCGCCGGCG
GCGGAGCGGCCCGCGTTGAGGCTGGCGTTCCTCAACCCGCCGATGCTGCCGATCTTCACCGGCAGCAAGATCGAGGACGT
GAACGGCGAGCCCCTCCAGGTCATCCTCGTCGACGCCGACACCGGCTCGCCCCGCGGCGCGCTCCCGCAGTTCATGCGCG
TCGAGCTGGTGCCGCTCTTCGGCGACTTCCCGCCGGACGGCCGCGAGGAGTGGACGGCCGGCGAGTTCGCCCGCGGCGTC
GTCAAGGAGCGCGCGGGGAAGCGCCCGCTCCTCACCGGCGACGTCGGCCTCACCATGCGTGACGGGCGCGCCGTCGTGAA
CGACCTCCAGTTCACCGACAACTCCTCCTGGGTCCGCTGCCGCAAGTTCCGCATCGGCGCGCGCGTGGTGCCGGGAAGCT
ACGAGGGCGCCAGGGTCGCCGAGGCCATGACCGAGGCCTTCAACGTCCGCGACCACCGCGGCGAACGTACGTCGACTTGA
ACTCCGATCCCTCTCTGTTTTTCCCTGAACATTC-----TGAACTGCGCGTGCTCATTCTGTCTTGA---TACGCATGCA
GTTTACCGGAAGCACTACCCGCCGGCGCTCACCGACGACGTGTGGCGGCTGGAGAAGATCGGCAAGGAGGGTGCCTTCCA
CCGGAAGCTGCGGCAGAACGGCGTGGAGACCGTGCAGGAGTTCGTGCGGATGCTCACCGTGAGGCCGGAAATGCTGCGCG
CGATGATGGGCGACGGCATGACGGACCGCATGTGGGAGGTGACCACGAGCCACGCCAGGACGTGCGACGCCGGCGACAAG
GTGTACGCGTACGCCGG---GCAGCACGGCGCCACCGTCTACGTCAACTCCCTCTGCCAGCTGGTCCGGCTCGAGTTCGC
CGGCGTCGAGTGCGCGGCGCAGCAGCTCACCAGGGCCCAGAAGGCGTACGTGCACCAGCTGTGCGTGGAGGCGTTCGAGC
AGCGGCACAGCCTCCAGGAGGCGGAGCCCCTGCCCGCCGCCATGCTCCTCCACGCCAGCAGCAGCAGCAGCAGCCTC---
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------------------------CCAATGCTGCAGAGTAAGCAACACATCCTCTGACCAGAATTCCTTCTGCTCCTGAA
A-ATGCTCTGCTTCTCTGAATTCTGACCA--------------AAACCTTCCTC-TTTCAGACGCAGCGCCGGTCACGCC
GCCGCCCCTTCCGGCGACGCCGCTCTGGTTCCAGGGAAACCAGGAGCTGGACCTCCAGATCGTCGACGAGCTCTCCGGCG
GCCAGGGCAACTTTGGCTTCCACATGTTCCAGAGCAACTTCGGCTA---------------AAGATGCAGGAGGAGCAGA
GTTTCAGCTGTGTACATTAACCAATA------CTACTACTATCTATCTACTC--------------CTACTTCAGAGTGC
GTGTGTGTTCAGGTCAGTTAAGCCACACGAACGTGTAAGGCAACTAGGTGAACTTGGGCGGCCCTCGCCGCTCGCCGAGC
ATGTGCTCAAACATCCGCGGGCGGCGA------CAAAGAGGCGGTCGATCGATCGAGTGAAAGGAATTCTTTGGTTTATT
CGTATGCTTTGTTGTATGTTGTACTTCTGT------TAAGCTTTAG----------GTGTTCGGCGTCCATGGTGATGGT
GCCGCTTGTAATGTT-GGGGGTGGCAACTTCACCTTTTTCTAGCATTTCCCCAAGTTATGGGTCTTGTAAATTCCAAGTC
TCAATAAACGGAACAA-AAACTTGCCTTTTTGTACACAACAATCA---TAC---TTGTCTTTGGTTTCCCAACATTTT--
CATGCTCTGGTGGCATGTAC----------AAGCACTCC--AAG-GTGGGATAATGCACATATTGACCAGCTAGA-----
----TTCTATGATGAAAAAATATAT-------------------------------------------------GACTTC
GAAGAAGAAATTTGAGATGCATTACGAAAAT--AGCGTATGATGGAAAA-CCC--TTTTAGAGAAAAGATGACTAC-ACA
AATCCAGGCAGATTCATATCCAAGTAGAGGGAAATGGTTTTACAACATTGATAAGATCAGATGTATAACAACAAAGCTGC
C-TGTTTGATAAAAAGGACCCTGCA-GAAACCAAATGGGCAGTAGGGTGGTGAGAAGTCAAGTCAAGCGTTTGCGCGTGA
GGCGAGATGCGAAAGGGACATGAACCTCCG--------------------------------------------------
----ATGTTTGCCGATGATACCGGTTCCATCTTCCCTAAGCAAAAAA-C-AGAGCATGGAAGCAAAGTAGAGCATCATTC
ATTCGTTCCAAATGCGAAACCCAACAAAGAAAACTATTCCTTACCCCATGGAGGGTG-----------------CTAATG
AAGATGATTCATCCGTTGGTTTCACAC---TAAAACATCACCATCATCTATAGCCCCTTTGGATGCTAA--
>chr3B_171
ATA-----------------------------------------------------------------------------
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-------------TGAACAAATTAAAGTCATTGAGTGCTCATAGCACCTAGACCTCACATGTATTGTCCTGATTAATAAA
TGTTCATGACAAGACATATGAGTTTATGCCTCACATGTCTTGTACTGATCAATAAATGTTCATGACAAGACATGTGAGTC
CATGTCTCACATGTCTTGTCAGACCTTACATGTCTTGTCATGATAATATATTCAAAAGCATTAAAATCATTGAGTACTAG
TAGCATCTAGACCTCACATGGCTTGCCATGAGTGGTCCATGTGGGGCCTAGATACTATGAGTACTCAATGCTTCAACGCT
CATAATAAT--------------------------------------ATATGAACATCTCTCAAAACATGTTTTTTGGCT
CACATGTTTTTTTCCGTGAATGTTGTATCCCCTCAAAGTTACCAAGATCAAAAGTGTCAACGAGCCTCACATGTTTCACT
CGTGA-------AATCAGAACATATGCTCGAG--AATCCATTTGTTAGCATCTGAATATTGTTATCTGTGTACACAACGA
CGGCCGCTTGTGCGCCGGACACACCGAAAGCGTTCGCCGGAGGGATCCGCCGGCGACGACGCGCGTTGAGAGGGACTTGA
CCATGCATCGTGAGCCAGTCTATGACATCGGGCCATTACATCACTCGGGCTCGGGCAC-------TCCG-------AACT
GAAGCAAACCCTTCTTCCTCACACCTTCCCGGAACCTTCCCCTCACCTTCCCGCCCCTTCCGCCATTGCGGC-GGCTATA
TAAGCCGGCCGACCCCTCGTCCTCTCGAGGCAAAACACACCCACACATCCACCCTCTCTCCCTCTCTTGCTCCTTCTTCT
TCCAGCTCCAGAAAATAGATACGCCG----AGGAGGAGGAGAAAGCGAGAGAAACACTTGTTTGTTCGCATTTGAGCAGC
GGCGCCGGCGATCGACATGGCGGCACACAAGCGGCTCCACGACGGCTTCGAGCAGGACCCCGACCAGCCCGAGAAGAAGC
GGATGGAGCGGTCGGTCTCCTTCTCCACGTGAGCTTCCTTCCAGCCCGCCGCCTCTTGGTTCGTCGTGTGTCTTGTTCAT
CCATGGAGCTCTTTGCTGATTCCATGGCGTGCGTGCGT-TTGGGGTTCCAGGGTGATCCGGGAGGCCATGGTGATGAAGC
AGGTGCAGAGTGTGTTCCTGGTGCTGGAGCCTCTCCTGCGCCGAGTGGTAAGCAGAGCCGTCCACCAGATTGCTGCTTGT
CTCGCTCGATGCTTGCTCTGTTCTTGGAAGAATCGAGTGTTCTGATCGGTTGCTCTGTTTCTTGA---TGGCGCGCGCGC
AGGTGCAGGAGGAGATCCAGGCGGGGCTGGTGCGCAGCCCGCGGTACATCGAGAGGTCCTCGCCGGAGACGCCGCCGGCG
GCGGAGCGGCCCGCGTGGAGGCTGGCGTTCCTGCGCCCGCCGATGCTACCGATCTTCACCGGCAGCAAGATCGAGGACGC
AAACGGCGAGCCACTCCAGGTCGTCCTCGTCGCCGCGGTCACCGGGTCGGTCTGCGGCGCTCTCCCGCAGTTCATGCGCG
TCGAGCTGGTGCCGCTCTTCGGGGACTTCCCTCCGGACGGCCGCGAGGACTGGACGACCGGCGAGTTCGCCCGGGGCGTC
GTCAAGGAGCGCTCGGGGAAGCGCCCGCTCCTTACCGGCGACGTCGGCCTCACCATGCGCGACGGGCGCGCCGTCGTCAG
CGACCTCCAGTTCACCGACAACTCCTCCTGGGTCCGCTGCCGCAAGTTCCGCATCGGCGCGCGTGTGGTGCCGGGAAGCT
ACGAGGGCGGCAGGGTCGCCGAGGCCATGACCGACGCCTTCAACGTCCGCGATCACCGCGGCGAACGTACGTCGACGCGA
ACTCCGATGCTCTCCCTCTCTTTTCGCTCAAATTTGACGTGAACTGCGCGTGCTCATTATCTCTGTGCTGTACGCTTGCA
GTGTACCGGAAGCACTACCCGCCGGCGCTCACCGACGACGTGTGGCGGCTGGAGAAGATCGGCAAGGAGGGGGCCTTCCA
CCGGAAGCTGCGGCAGAGCGGCGTGGAGACCGTGCAGGAGTTCGTGCGGATGCTGAACGTGAAGCCGGACGTGCTGCGCG
CGATCATGGGCGACGGCATGACGGACCGCATGTGGGAGGTGACCACGAGCCACGCCAGGACGTGCGACGCCGGCGACAAG
GTGTACGCGTACGCCGG---GCAGCACGGCGCCACCGTCTACGTCAACTCCCTCTTCCAGCTGGTCAGGCTCGAGTTCGC
CGGCGTCCAGTGCGCGGCGCAGCACCTCACCAGGGTCCAGAAGGCGTACGTGCAGCAGCTGTACGTGGAGGCGTTCGAGC
AGCGGCACAGCCTCCAGGAGGCCGAGCCCCTGCCCGCCGCCATGCTCCTCCACGCCAGCAGCAGCAGCAACAGCCTC---
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------------------------CCAATGCTGCAGAGTAAGCAACACGTCCTCTGACCACAATTCCTTCCGCTCCTGAA
ATATGCTCTGCTTTTCTTCTG-AATTATAATGTCTAATGTTCAAAACGTTCTTGTTTTCAGACGCAGCGCCGGTCGCGCC
GCCGCCGCTTCCGGCGACGCCGCTCTGGTTCCAGAGCAACCAGGAGCTGGACCTCCAGATCGTCGACGAGCTCCCCGACC
AGAATGGCTGCTTCGGCTTCCAGATGTACTGACATGGCAGGCTAAAATGTCATCAAGTATGAAGATGCAGGAGGAGCAGG
GCTTGAGCTGTGTACATTAACCAGCACCACTACTACTACCACCACCACTACTATCTACGCAAG----------AATGTGT
GTCAGTGTTCAGTTCAGTTAGTCTAAGG---------------CTAGGTGAACTTGGGCGGCCCTCGCCGCTCGCCGAGC
ATGTGCTCAAGCATCCGGGGGCGGCGA------CAA-GAGGCGATCAATCGATCGGTCGAGTGAAATTCTTTGGTTCATT
TGTATGCTTTGTTGTA-GTTTCATTGTCTT--------CTGCAAAGTTGTAGGCGTGTGTTGGGCGTCCATGGTGATGGT
GTCGCTTGTAATGTT-GGGGGTGGCAACTTCACCTTTT-CTAGCATTTCCACAAGTTATGGGTCTTGTAAATTCCAAGTC
TCAATAAAGGGAACAC-AAACTTGCCTTTTTGTACAGAACAATCATACTAC---TTGTCTTTGGTTTCCCAACATTTT--
CATGCTCTGGTTGAATGAACAAG-----------ACTCC--AAG-GTGAGATAATGCAGATATTGACCAGCTAGAAATCG
AGCGTTCTATGATGAAAAAATATAT-------------------------------------------------GATTTC
GAAGAAGAAATTCGAGATGCATTATGAAAAT--AGTATATGATGAAAAA-CCATGTTTTAGAAAAAAGATTACTAC-TCA
AATCCAGACACATTCATATCCAAGAAGAGAGAGATGGTTTTACAATATTGATAAAACCAGATCTATAACAACAAAGCTCT
C-TGTTTGATAAAA-GGACCCTGC--GAAACCAAATTGGCAGTAA-GCAGTGAGAAGTCAAGTCAAGCGTTTGCGCGTGA
AG-GAGATGCGAAAGGGACATGAACCTTCG--------------------------------------------------
----ATGTTTGCCGATGATACCGGTTCCATCTTCCCTAAGCAAAAAAAC-AGAGCATGGAAGCAAAGGAGAGCATCATTG
ATTCGTTCCAAATGTG-AACCCAACAAAGAAAACTATTCCTTACCCCATGGAGGGTGCTAATGAAGATGAGGTGCTAACG
AAGATGAGTCATCCGATGGTTTCACAC---TAAAACATCACCATCATCTATAGCCCCTTTGGATGCTAA--
>chr3A_174
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-------------TGAACAAATTAAAGTCATTGAGTGCTTATAGCATGTAGAGA--------------------------
------------------------------TCACATGTCTTGCCTTAATCAATAAGTGTGCATGACAAGACATATGAGTC
CATGTCTCG-------------------CATGTCTTGTCATGACAATATATG--AAAGCATTAAACTCATTGAGCACGCG
TAGCATCTAGACCTCACATGGCTTGCCATGAGTGGTCCATGTGAGGGCTAGATACTACGGGTACTCAATGCTTCAATGCT
CATAATAAT--------------------------------------ATATTTATATCTCTCGAAACATTTTTGCACA--
-------TTTTTTTCGTGAATGCTGTATCCTCTCAAAGTTACCAAAATCAAAAGTGTCAACGAGCCTCACATGTTTCACT
CGTGAGTCGTGAAATCAGAACATATGCTAAAAAAAATCCGTTTGTTAGCATCTGAATATTGCTATCGGTGTACA-AACGA
CGGCCGCTTGTGCGCCGCACACGCCGAAAGCGTTCGCCGGAGGGCTCCGCCGGCGGCGACGCGCGTTGAGAGGGACTTGA
CCATGCGCAGTGAGCGAGTCTATGACATCGGGCCATTACATCACTCGGGCTCGGCCACTCCGAAGTCCG-------GACT
GAAGCGAACCCTTCTTCCTCACACCTTCCGGGAACCTTCCCCTCACCTTCCCACCCCCACCGGCATTGCGGC-TGCTATA
TAAGCCGGCCAACCCCTCGTCCTCTCGAGGCAAAACACACCCACACATCCACCCTCTCTCCCTCTTCT--TCCTCCTCCT
TCCAGCTCCAGAAAATAGATACGCCGATCGAGGAGGAGGAGAAAGCAAGAGAAACACTTGTTTGTTTGCACTTGAGCAGC
GGCGCCGGCGATCGAGATGGCGGCTCACAAGCGGCTCCACGACGGCTTCGAGCAGGACCCCGACCAGCCCGAGAAGAAGC
GGATGGAGCGGTCGGTCTCCTTCTCCACGTGAGCTTCCTTCCAACCCGCCGGCTCTTGGTTCGTCGTGTGCCTCGTTCAT
TCAGGGAGGTGTTTGCTGATTCCATGGCGTGCGTGTGTGTTGGGGTTACAGGGTCATCCGTGAGGCCATGGTGATGAAGC
AGGTCCAGAGTGTGTTCCTGGTGCTGGAGCCTCTCCTGCGCCGAGTGGTAAGCAGAGCCGTTCACCAGATTGCTGCTTGT
CTCGCTCGATGCTTGCTCTGTTCTTGGAA---TCGAGTGTTCTGATCGGTTGCTTCGTTTCTTGA---TGGCGCGCGTGC
AGGTGCAGGAGGAGATCCAGGCGGGGCTGGTGCGCAGCCCGCGGTACATCGAGAGGTCGTCGCCGGAGACATCGCCGGCG
GCGGAGCCGCCCGCGTTGAGGCTGGCGTTCCTGTTCCAGCCGGCGCTGCCGATCTTCACCGGCAGCAAGATCGAGGACGT
GCACGGCGAGCCGCTCCAGGTCATCCTCGTCGACGCGGTCACCGGGTCGCCCTGCGGCGCGCTCCCGCAGTTCATGCGCG
TCGAGCTGGTGCCGCTCTTCGGGGACTTCCCGCCGGACGGCCGCGAGGACTGGACGACTGGCGAGTTCGCCCGCGGCGTC
GTCAAGGAGCGCGCGGGGAAGCGCCCGCTCCTCACCGGCGACGTCGGCCTCACCATGCGGGACGGGCGCGCCGTCGTGAA
CGACCTCCAGTTCACCGACAACTCCTCCTGGGTCCGCTGCCGCAAGTTCCGCATCGGCGCGCGCGTGATGCCGGGCAGCT
ACGAGGGCGGCAGGGTCGCCGAGGCCATGACCGACGCCTTCAACGTCCGTGATCACCGCGGCGAACGTACGTCGACGCAA
ACTCCGACGCCTCTCTGTTCTTCCCTGAACATTC-----TCAACTGCGCGTGCTCATTATCTCTCTATTGTACGCATGCA
GTGTACCGGAAGCACTACCCGCCGGCGCTCACCGACGACGTGTGGCGGCTGGAGAAGATCGGCAAGGAGGGGGCCTTCCA
CCGGAAGCTGCGGCAGAACGGCGTGGAGACCGTGCAGGAGTTCGTGCGGATGCTCACCGTGAGGCCGGAAATACTGCGCG
CGATAATGGGCGACGGCATGACGGACCGCATGTGGGAGGTGACCACGAGCCACGCCAAGACGTGCGACGCCGGCGACAAG
GTGTACGCGTACGCCGG---G---CACGGCGCCACCGTCTACGTCAACTCCCTCTGCCAGCTGGTCCGGCTCGAGTTCGC
CGGCGTCGAGTGCGCGGCGCAGCAGCTGAGCAGGGACCAGAAGGCGTACGTGCACCGGCTGTACGTGGAGGCGTTCGAGC
AGCGGCACAGCCTCCAGGAGGCCGAGCCCCTGCCCGCCGCCATGCTCCTCCACGCCAGCAGCAGCAGCAACAGCCTC---
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------------------------CCAATGCTGCAGAGTAAGCAACACACCATCCGACCAAAATTCCTTCTGCTCCTGAC
A-ATGCTCTGATTTTCTTCCGAAATTCTAACGTCTCATGTTCCAAACCTTCTTC-TTTCAGACGCTGCGCCGGTCGCGCC
GCCGCCGCTTCCGGCGACGCCGCTCTGGTTCCAGGGCAACCAGGAGCTGGACCTCCAGATCGTCGACGAGCTCTCCGGCG
GCCAGGGCAACTTTGGCTTCCAGATGTTCCAGAGCAACTTCAGCTA---------------AAGATGCAGGAGGAGCAGA
GCTTCAGCTGTGTACATTAACCAATG------CTACTACTACTACCACTACTGTCTATTATCTACTCTATTTCAGAATGT
GT-TGAGTTCAGGTCAGTTCAGTCACACCAAGGTGTAAGACAACTAGGTGAACTTGGGCGGCCCTCGCCGCTCGCCGAGG
ATGCGCTCAAGCATCCGCGGGCGGCGA------CAA-GAGGCGATCGATCGGTCGGTCGAGTGAAATTCTTTGGTTTATT
CGTATGCTTTGTTGTA-GTCATATATACTTCCGCTATAAGCTCTAA----------GTGTTGGGCGTCCATGGTGATGGT
GTCGCTTGTAATGTT-GGGGGTGGCAACTTCACCTTTTTCTAGCATTTCCACAGGTTATGGGTCTTGTAAATTCCAAGTC
TCAATAAAGGGAACAA-AAACTTGCCTTTTTGTACAGAACAATCA---TACTAGTTGTCTTTGGTTTCCCAACATTTTTT
CATGCCCTGCTGGCATGTCTTT--------AAGCACTCCAAAAG-GTGAGATAATGAACATATTGACCAGCTAGAAATCC
AGCTGTCTGTTTATAACTTAGGGG-GCAACCGCTTTTCTGCCACC--------------TGCGAGCTAGATGTGGATGTC
GAAGAAGAAATTCAAGATGCATTATAAAAAT--A---TATGATGAAAACTCCC--GATTAAAAACAAGATGACTGAATCA
ATGCCAGGCACATTCATACCCAAGTAGAGGGCAA-----TTACAGTCTTGATAAGATCAGATGTATGACAACAAAGTTCT
CTCTTTTGATAAAA-GGACCCTCTGGAAAACAAAAGGGGCAGCAGCACGGTGAGAGGTCAAGTCAACCGTTTGCGCGCGA
G-CGAGATGCGAAAGGGACAGGAACCTTCGATGTTTGTCGATGGTACCGGTTTCATCTTCCCTAAGCAAAAAAACAAACC
TCCGATGTTTGTCGATGATACCGGTTTCATCTTCCCTAAGCAAAAAAAAAAGAGCATGGAAGCAAACCAGAGCATCATTG
ATTCGTTCCAAATGTG-AACCCAACAAAGAAAACTATTCCCTACCCCATGAAG-----------------GGTGCTAATG
AAGATGAGTCATCCGTTGGTTTCACACTAATAAAACATCACCATCATCTATAGCCCCTTTGGATGCTAA--
>chr3D_1983
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-------------------------------------------------------------TCTGTCCTGTACGCATGCA
GTGTACCGGAAGCACTACCCTCGGGCGCTCGGCGACGACGTGTGCCGGCTGGAGAAGATCGGGAAGGAGGGAGCCTTCCA
CCGGAAGCTGCGGCAGCACGGCGTGGAGACCGTGCAGGAGTTCGTGCGGATGCTCATGGTGAAGCCGGAAATGCTGCGCG
CGATAATGGGCGACGGCATGACGGACCGCATGTGAGAGGTGACCACGACCCACGCCAGGACGTGCGACGCCGGCGACAAG
GTGTACGCGTACGCTGGGCAG---CACGGCGCCAGCGTGTACGTCAACTCCCTTTGCCAGCTCGTCAGGCTCGAGTTCGC
CGGCGTCGAGTGCGCGGCGCAGCAGCTGAGCAGGGCCCAGAAGGCGTACGTGCACCAGCTGTACGTGGAGGCGTTCGAGC
AGCGGCACAACCTCCAGGAGGCCGAGCCCCTGCCCGCCGCCATGCTTCTCCACGCCAGCAGCCGCAGCAACAGCCTTCGA
GTAAATAGCATAAAACTACTACTTTACAGGCTAGGGTTCCAAAAAACTACCGGTTTTTAATTTTTCTTAGATAACTACCA
AATGGGCGGTCGACTGTTTCAAAAAACCTCAAATGACCGTTGCTTAAAATTTAAACATGTTTAGGACAGGTCGGGCCCGC
ACCTAAACAAACCGTCTGTTTGACCATTAGGTTGACCGTTAATTTACAAGTGGGGCCCACATGTCAGTGTCTCTATCTCA
TATGTCCTCACTTTTTACAAAATAGCCCCTATAAACATTTCTAAAAAAAGCAATCGGGTCCCTGCTCTAGATCACAGCAC
CACTGGCGCAGTTCCTCTCGACGCCGCCTCGTTCGGCCGGCGAGCCGCACCGGCAGCCGCCGGAGCTCGCCATCGCGCGA
CCTGTCTCTCTTTCCTCTCCCTCGCGCCGGCTCGAGGTGGATCAGGCGGCCGACGTGTTGGGGTCCAACCGGAGCTCCTT
GCCCGCGGCCGCCGTCGACGCCTTCGCCGGCCTTCTTGTGCTATCCGCCGCCGCCGATGCGTACAGCCTGCGCCGCTACT
GGAGCGTGTGCCTCCCGCTGCCGCTGCCGGCTCTGCCGCCGGCCGTCTCCGCGCCCGAGCTCGCGCAGCTGCTACTCGCG
GCCATGGCCGCCACCGCGTGTGCCCTCCGCTGCCAGGCCCGGTGAGCTCTGTCGCCGGCCATCCCCCAGCCTCCATCTCT
CCAGCCACTGCTCCAGGCGGCGGCTTGCACACAAGCCCCCCATGGCGCGCGAGGCGACCGCGTGCGGAGCCCCATGGCGT
GCAGCGACGGCCACGGGCAGAGCCCTTTGGAGGCTGATTCCAGGGACTCGATTGCTTTTTTTAAATGTTTGTAAGGGCTA
ATCCGTAAAAAATCTATGAATGAGGCGCTGACATGTGGCCCCCACAAGTCAGTTAACGGTCAAATAAATGGTCAACCAAA
CGATGTGTTTAGTGGTGGGCCCGACCTGTCATAAACATGTTTAATTTTTTAACAAAGAGAATTTGGGGTTTTTTGAAACA
GCCAACCCCTGACTTGGTAGTTATCTGAGAAAAATTTAAAAGTGGTAGTTTTTTGGAACCATAGCCCGTAAACTAGTAGT
TTTATGCTATTTACTCATAGCCTTCCAATGCTGCAGAGTAAGCAACACATCCTCTGACCAAAATTCCTT-----------
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>chr3B_2699
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----------------------CATGTTCCAGAGCAACTTCGGCTG----------------AGATGCAGGAGGAGCAAA
GTTTCAGCTGTGTACATTAACCAATG---------CTACTAGTACCACTACCATCTATCTC--------CTTCAGAATGT
GTGCGTGTTCAGGTCAGTTAAGCCACAAGAATGTGTAAGGCAACTAGGTGAACTTGGGCGGCTCTCGCCGCTCGCCGAGC
ATGTGCTCAAGCATCCACAGGCGGCGA------CAA-GAGGTGATCGATCG----GTCGAGTGAAATTCTTTAGTTTATT
CGTATGCTTTGTTGTA-GTTTTGTTATCTTCTCTTCTCCTGCAAAGTTGTAGGTGTGTGTTGGGCGTCCATGGTGATGGT
GTCGCTTGTAATGTT-G-GGGTGGCAACTTCACCTTTT-CTAGCATTTCCACAAGTTCTGGGTCTTGTAAATTCCAAGTC
TCAATAAAGGGAACAA-AAACTTGCCTTTTTGTACAGAACAATCATACT------TGCCTTTGGTTTCCCCGCATTTT--
CATGCTCTGGTGGCATGCAC----------AAGCACTCC--AAG-GTGAGATAATGTACATATTGACCAGCTAGAAATCC
AGCATTCTATGTTGAAAAGATATAT-------------------------------------------------GATTTT
GAAGAAGAATTTCGAGACACATTATGAAAAT--A---TATGATGAAAAC-CCC--TGTTTTAAACAAGATGACTAC-TCA
AATTCAGGAAGATTCATATCCAAGTAGAGGGAGATGGTTTTACAATATTGATAAGACCAGATGTCTAACAACAAAGCTCT
C-TGTTTGATAAAA-GGACCCTGCA-GAAACCAAATGGGCAGTAAGGCAGTGAGAAGTCAAGTCAAGCGTTTGCACGTGA
G-CGAGATGCGAAGGGGACATGAACCTCCA--------------------------------------------------
----ATGTTTGCCGATAATACCGGTTCCATCTTCCCTAAGAAAAAAT---AGAGCATGGAAGCAAAGCAGAGCATCATTG
ATTCGTTCCACATGTG-AACCCCACAAAGAAAACTATTCCTTACCCCATGGAG-----------------GGTGCCAATG
AAGGTAAGTCATCCGATGGTTTCACAC---TAAAACATCATCATCATTTGTAGCCCCTTTATAGATGCTAA
>chr3B_2718
GGA-----------------------------------------------------------------------------
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--------------------------------------------TA---------------AAGGTGCATCAGGAGTAGA
GTTTCAGATGTGTACATTAGCCAATC------ATACTACTACCACCACTACTATCTATCTA----TCTACTTCAGAATGT
GTGCGTGTTCAGGTCAGTTAAGTCACATGAAGGTGTAAGGCAACTAGGTGAACTTGGGTGGCCCTCGCCGCTCGCCGAGC
ATGTGCTCAAGCATCCGCGGGCGACGA------CAA-GAGGCGATCGATTGATCGGTCGAGTGAAATTCTTTGGTTTATT
CGTATGCTTTGTTGTA-GTTTCGTTATCTT-----CTCCTGCAAAGTTGTAGGATTGTGTTGGGCGTCCATGGTGATGCT
GTCGCTTGTAATGTTGG-GGGTGGCAACTTCACCTTTT-CTAGCATTTCCACAAGTTATGGGTCTTGTAAATTCCAAGTC
TCAATAAAGGGAACAACAAACTTGCCTTTTTGTACAGAACAATCATACT------TGTCTTTGGTTTCCCAGCATTTT--
CATCCTCTGGGGGAATGCAC----------AAGCACTCC--AAG-GTGAGATAATGCAGATACTGACTAGCTAGAAATCA
AGCGTTCTATTTATAACTTAGGGGGGCAACAACTTTTCTGCCATCAAATGCACGCCACCCGCGACCCAGATGTGGATGTC
GAAGAAGAAATTCAAGATGCATTATGAAAAT--A---TATGATGAAATTTCCC--TATTAATAACAAGATGACTAAATCA
AAGCCAGGCGCATTCATATCCAAGTAGAGGGAAATGGTTTTACAATCTTCATAAGATCAGATGTATAACAACACAGTTCA
C-CCTATGATAAAA-GCACCCTGCA-AAATTCAAATG-------------------------------------------
--------------------------------------------------------------------------------
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>chr1D_2866
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----------------------------------------------------------------TCGCCGCTCTCCGAGC
ATGTGGTCAAACATCCGCGGCGGCGGCAAGAGTCAA-GAGGCGATCGATCG----GTCGAGTGAAATTCTTTGGTTTATT
CGTATGCTTTGTTGTA-GTTGTACTTAGCTTT-----------TAA----------GTGTTGGGTGCCCATGGTGATGGT
GTCGCTTGTAATGTGGG--------------------T-CTAGCATTGTGGGTCT---------TTGTAAATTCCAAGTC
TCAGTAAAGGGAAC-----ACTTGCCTTTTTGTACAGAACAATCATTGTGGTC-------TTGGTTTCCCTACACTTT--
CATGCTCTGGTGACATGTACCACCTAGATGAAGCACTCC--AAAAGTGAGATAACGCACATATTGACCAGCTAGAAATCG
AGCGTTTTATTTCTAGCTTAGGGA-GCAACCGCTTTTCTGCCATCCAATGCACGTCACATGCGAGCTAGATGTGGATGTC
GAAGAAGAAATTCAAGATGCCTTATGAAAAAAAA---TATGATG-----TCCT--GTTTTAAAAAAAGATGATTAAATCA
AAGCCAGTCACATTCATATCCAAGTAGAGGGAAATGGTTTTACAACCTTGATAAGATCAGATGTATAACA-CACAGTTCT
CTCCTTTGATAAAA-GGACCCTGCA-AAAACCAAAAGGGCAGCAGCGTGGTGAGAAGTCAAGTCAAGCGTTTGCGTGGGA
G-CGAAATGCGGAAGGGACATGAACCTCCG--------------------------------------------------
----ATGTTTGTTGATGATACC----------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS---------------------------------------S---------------------------
----------------------------------------------------------S---------------------
-------------------------------------------------S-S------S---S--S---S----------
--------------------------------------------------S----S--S---------------------
-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-SS-SS--------------S-------
S-------------------S----S-----------S------S--S--------------------------------
-S--------------S--S--------------S-----------------------------S---S-----------
--------------------S------------S----------------------------------------------
---------------------S-----------------------------------------------SSSSSSS----
--------S---------------------------------------------------------------S-------
--------------------------------------------------------------------------------
----SS-----------S------------------------------S--------SS-----------------S---
---------------------S--S--------------------S----------------------------------
-------------------S---------------------------------S--------------------------
--------------------------------S--------------S--------------------------------
--------------------------------------------------------------------------------
----------------------------------S--S----------S--------S-------SSS------------
--------------------------------------------------------------------------------
--------------------------------SSS---------------------------------------------
------------S-----------------------S-S------S------S---------------------------
----------------------S--------------------------S------S-----------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
---------S------------------------S-----------------S-----------------------SS--
--------S----------S--------------------------------------S-S---SS--------------
--S--------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
----------------------S----------------------------------------------S----------
--------------------------------------------------------------------------------
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------------------------------------------------------------S-------------------
-------------S---SSSSSSSSS-S-----------------------S-----------------------S----
------S-----------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S-SSSSSSSS----------------------------S
-------------------------------S------------------------------------------------
------------------------------------S------S-----------SSS--SS-S----------------
----------------S---------SSS-------------S------------------S------------------
-S------------------------------------------------S-----------------------------
--------S---------------------------S-------------------------------------------
------------------------------------------------S-------------------------------
----------------------------------------------------------------------------S---
------------S-----------S----------SS-------S-----------------S--------------S--
------------------------------------------------------------------------------SS
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S-----------S
--------------S-S---------------------------------------------------------------
-------S---------------------------------------------------------------
>forward_523
--------------------------------------------------------------------------------
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-----------------------CCCCCGGATTCAATGCTCAT-------------------------------------
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>reverse_2078
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------TGA
ACTCCGATCCCTCTCTGT--------------------------------------------------------------
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-----------------------------------------------------------------------
>forward_822
--------------------------------------------------------------------------------
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--ATGCATCGTGAGCCAGTCTG----------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>reverse_2146
--------------------------------------------------------------------------------
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-----------------------------------------------------------------GATACGCATGCAGTT
TACCGG--------------------------------------------------------------------------
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>forward_1328
--------------------------------------------------------------------------------
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----------------------------CGTGCTTGTGTTTGGGGTTG--------------------------------
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>reverse_4363
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------TTAGGTGTTCGGCGTCCATG------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------
