>input_sequence_44625
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-----------------------------------------------------------------ATGACGCAGAAGCAG
ACCATGTTCAAGGGGCAGACCAAGAAGAAGTCCATCCCTCCCAGCCGCCATGGCAAGGCGCCCCACATCCGCAAAGGTTT
GTGCCCCAGCCGACTGCTTTTGCTTTT-C--------------------------------------TGCTTCGTTGATG
GTGCCGTATGCTTGCTCGCTTGTTTGTTTGATTGGCTGGTTGATGGATTCCTGTAGGGAAGAGGGCCGTGAAGCCGACCA
AGTGCACCAAGGACATGGACGCCGACAAGGTATGTTATAGCTTGTAAATTTATCGCCCTATCTGTCAGGAGTCAGGATGC
GCCGTCTTCCGTTAGGAAAATCAACATTGGTTGTTGTAATTGGGTTGCACCAGAGGCGATTGTGTAGGAGAGGCTGCCAC
GAATGCCAATCTGAACTGACTGTTTCTGAATTTGTTTGCCAACACCTCTAATA----TA----TCTTACATCTTACTAGC
TGTTGTGTTTTAGTTGATGGTTCAGGATGC--------------------------------------------------
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---------------------------------CTCCAAATTAATGTATTACCTGTCTCCTGTAACACCTGATGTGGAAT
TTGAGAACTGTGATGCTTGTCGACATTCTACATATCTGCCTAGCTCTGGTTTAATCCATAAATTCATACTACTTGCCATT
TTAGCTTCATTGGGTTTCCCAATTTCCATTTATCACAACAAGACTGGTATTTCATTTGACCATGTAAAGTTTGTAGCGTC
ATACTGTTACGAATCTTGATTCGCGATGAGATAAGTTGGGTGGGGTAAAGGTCTGTAGACTGGGA-----TATTGCACTC
GCCCCCAACAATCTAGCGACAGGGCTCGTCCCTGGCCAGTGTCTGAGGCTCAGAGAACTTTTGTTTATTT--------CT
TTGCTTGTTTAAACTTGTTACTACATGATAGTCCTTTATATAGGACGA--AACTTGATTCACAAGTACGATCCAGATTCA
TACTCGCAATAATCCAGCATGAAAACTGGATGATAATTGACCTGTGTGTGTA-------GAAGACAATATTTTGAACTAC
CGATACTTAGGTTGAAATTTATTTAGCATGATTCTGTATGCTTTCTTTGTGTTGTGAGCTCCAAAAAATCAGTGTAATAT
CAGTAACCCCTTTCATCAGTGCAAGAAAGGCGTTAGATGTATAGAGTTTACCCATTCTACAGTGATCATCATTGTTGTAT
CTATTGT-------------------------------------------------------------------------
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---------------------------------CGAAGACACCCATATACACGCAGACATAAATCTTAGGATCCATTTAT
ATATTTCGCGATGGTTGTTTTGGTGGCGTTTTTCATTGTAGCCATAAAGTTAGTTTGTCTCTTTATTTCTGTACAGTCTA
TCTGTGTTCTTTATCACAGAGTGTGCACACCATGGTAACATCATTTTTTCTCTCATTTCCTTTGTAAGCCGTACTACAAT
ACTTTCCATCCAATATGACCAATAGCGCGATCCTTTGACATTTGAGTTTAACAGTAATGCTGTGAATCAACTAGTGGGCA
ATAACATACTGTGAA-------CCAACTAGTTTGCAATCAAGAAAAAAAGATCAGGCCTTTGAATTTATCATAACTTCTA
ATTTAAAACATCATATTTGTTTAATGATCTTGTAATGTGGTTCGTATATTGATTTTGTTTTTGCTAACAATCAATACAAT
CTATGAATTTTCAGGACCTCACAAAGTTCATCAACCACGCGAACGAAATAAAAGCTGCAAATAAGGCTAGCAAAGAAGGT
GGTGACCTCAGCATAGTGAAGTCCGACGCGGATACTTCCAACTCGAAGCAGTAG--------------------------
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>chr3A_1_TraesCS3A01G187100
ACATGTAGATGAACTGCACAGACATCAAAAATCTTATTGCTCCCATCAATATCCGGCAGATTAGACTATAGTTATTAAGC
TATAAATTTGTATTTTCTACTCCAGCTGCCATAGAAAA-CCCAAGTTGAATCAACATTGCAATTAAATTTCCCATGTCCA
GACTACTAAATATAGGAACTGTCCAAAGTAAATTGATGAAGTAGGAAAATAACAGAGTATTAACCAGATTTAGATCCAAC
AACATTCATTCCTGTAAATCCAAACAAGTTCACGGCTGAATCATCTCGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGATCACGGAGGTAGCTTGGGGGAGATAAATA-----------------------------
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AGTGGAGAGAAG------------GAAGGGGAATACTACCTGCAT---------------GTAGGCGGCGGAGCCCTCGC
GGCTAAGTGTGAGGAATCACTGT----------------------TGTGCCTGTCGCAGAAGATGAGTCACGGCGGCGCT
GGAGGTTGGGGATTGCTTCCTGCGGCGGCTCATGGTGGCACCTTGGAGGGAAAGACGCGAAGCCTGCTGGGGTGGCGATT
GGCAATCGCGACGACGAGTTGGCATAGTCACGAGGCGGCGCGAG--------GGAGGAGGCGGGATGCACAACGGCGGTG
GTTAGTGGAGGAAGAAGGTCGTGCTGCTCGGGAGTGGATAAGATTTTCCTTTT---TTTTAGTGGAGAGATGGACCGAGC
ATGTGAGGTCGCTGTCCATTGTTGCGCAGCGCGGCCGCTCGGTCTCGCGAAATAGTGCGCGTGCACTCTTAAGATTTTAG
GGGAAAAAATAGAAACAACTAGACCTCCATCTGGGCTTCGTCATAGAGAGGGCCTCCAACTGAGCTACCTCCCCAGCCAA
GCCGAAACCCTAGGCAAGCACGCAGCCGCCGCGTATCCC----CGACCGCCATAGCCGCGGCTCTACGTTTCAGCCGAAA
TCCGGTAATCCCCGTCC-AGAACACCAGAACCCGC----------GGATCGAAGAGGCGGAGAAGATGACGCAGAAGCAG
ACCATGTTCAAGGGGCAGACCAAGAAGAAGTCCATCCCTCCCAGCCGCCATGGCAAGGCGCCCCACATCCGCAAAGGTTT
GTGCCCCAGCCGACTGCTTTTGCTTTT-C--------------------------------------TGCTTCGTTGATG
GTGCCGTATGCTTGCTCGCTTGTTTGTTTGATTGGCTGGTTGATGGATTCCTGTAGGGAAGAGGGCCGTGAAGCCGACCA
AGTGCACCAAGGACATGGACGCCGACAAGGTATGTTATAGCTTGTAAATTTATCGCCCTATCTGTCAGGAGTCAGGATGC
GCCGTCTTCCGTTAGGAAAATCAACATTGGTTGTTGTAATTGGGTTGCACCAGAGGCGATTGTGTAGGAGAGGCTGCCAC
GAATGCCAATCTGAACTGACTGTTTCTGAATTTGTTTGCCAACACCTCTAATA----TA----TCTTACATCTTACTAGC
TGTTGTGTTTTAGTTGATGGTTCAGGATGC--------------------------------------------------
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---------------------------------CTCCAAATTAATGTATTACCTGTCTCCTGTAACACCTGATGTGGAAT
TTGAGAACTGTGATGCTTGTCGACATTCTACATATCTGCCTAGCTCTGGTTTAATCCATAAATTCATACTACTTGCCATT
TTAGCTTCATTGGGTTTCCCAATTTCCATTTATCACAACAAGACTGGTATTTCATTTGACCATGTAAAGTTTGTAGCGTC
ATACTGTTACGAATCTTGATTCGCGATGAGATAAGTTGGGTGGGGTAAAGGTCTGTAGACTGGGA-----TATTGCACTC
GCCCCCAACAATCTAGCGACAGGGCTCGTCCCTGGCCAGTGTCTGAGGCTCAGAGAACTTTTGTTTATTT--------CT
TTGCTTGTTTAAACTTGTTACTACATGATAGTCCTTTATATAGGACGA--AACTTGATTCACAAGTACGATCCAGATTCA
TACTCGCAATAATCCAGCATGAAAACTGGATGATAATTGACCTGTGTGTGTA-------GAAGACAATATTTTGAACTAC
CGATACTTAGGTTGAAATTTATTTAGCATGATTCTGTATGCTTTCTTTGTGTTGTGAGCTCCAAAAAATCAGTGTAATAT
CAGTAACCCCTTTCATCAGTGCAAGAAAGGCGTTAGATGTATAGAGTTTACCCATTCTACAGTGATCATCATTGTTGTAT
CTATTGT-------------------------------------------------------------------------
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---------------------------------CGAAGACACCCATATACACGCAGACATAAATCTTAGGATCCATTTAT
ATATTTCGCGATGGTTGTTTTGGTGGCGTTTTTCATTGTAGCCATAAAGTTAGTTTGTCTCTTTATTTCTGTACAGTCTA
TCTGTGTTCTTTATCACAGAGTGTGCACACCATGGTAACATCATTTTTTCTCTCATTTCCTTTGTAAGCCGTACTACAAT
ACTTTCCATCCAATATGACCAATAGCGCGATCCTTTGACATTTGAGTTTAACAGTAATGCTGTGAATCAACTAGTGGGCA
ATAACATACTGTGAA-------CCAACTAGTTTGCAATCAAGAAAAAAAGATCAGGCCTTTGAATTTATCATAACTTCTA
ATTTAAAACATCATATTTGTTTAATGATCTTGTAATGTGGTTCGTATATTGATTTTGTTTTTGCTAACAATCAATACAAT
CTATGAATTTTCAGGACCTCACAAAGTTCATCAACCACGCGAACGAAATAAAAGCTGCAAATAAGGCTAGCAAAGAAGGT
GGTGACCTCAGCATAGTGAAGTCCGACGCGGATACTTCCAACTCGAAGCAGTAGGCTGGAGGCTTATGCTGCTTACTGTG
ATGCACACTACAAGATCAGTGTGTGAAATGATCCATATATCATGTTTTCATGAAGAGAGTATGTTTCGTTCACTCTACA-
----TTGTAATCTGTAACCAGTTTTGTGAAATC-AAATTTTGTTCTGTGAATCTCTTTTCGGGATGCTAAAAGGCTAGAT
TATCTGTAGCCTCCCCAAAAACCTTCTCCGATGTCAC--TTTTGCGAGTTACCACAACTCTCTAGCCCGTCTCTCAAAAT
TGTATAACTTCCAAATCTTGCTTGGGATCTTGGTGGGAGTAAACTTCCTTTCATAAACTGCCGCCAAAGACCAAAGTGGA
AAGAAATTATATGAGACCAGGTCTTACGGTTAGCAGGTGAGACCCACCCTGATGGATGACACGTGACATTCATAAATCTT
AAAACATCTAATTTCTCTCCCTGATTTTAAGTAAGGGGTGGGGTAAATGTTTTGTGATTTGTAAATGCCACGTGTCATTC
ATCAGAATGGGTCTCGCGTGAGACTTGGTTTCATAAAATTCTTTTCCGACCAAAGACATCTGCATCACTGCTGGTTCACT
GCCTTGAGACGATTCTTAAGCTGAGTCGCCCTTGCTTTCCTCCTTGGCTCCTTCGGTCCAAGAGCTTGTAGTCGTATCAG
TACTCTCCCTGCAGCCAATGCGCCCGTGTCGTCCGGTCATCG-CTTTTCTGCACCATGAGCTCTCCGCCTACAGAGTCTC
GGCCTTTTCTGCACTGTAAGAGCAATTCCAATGAGGCGATCGTCGTCCATTTTTTATCTGTTTGAATCGGACGTCGGACC
CGACGGCGATTTCATCCGTTTTTTTACTCGTTTGGGTTGGTCGCCCACCCGGCGTCCGCCCTATCTTAGATATGGGTCGA
CAGCACGCCCAACGCACCGACCCATATGTGCCGGCTGGCCGCCTTATTTTGCATCGATGAATTGCATTCAAACATATTGT
TAAATAGCATAGTTTAAACCGAA
>chr3B_1
ACATGTAGATGAACTACACAGACATAAAAAATCTGATTGCTCCCATCAATATCCGGCAGATTAGACTCCAGTTGTTAAGC
TACAAATTTGTATTTTCTACTCCAGCTGCCATAG-AAA-CCCAAGTTGAATCAACATTGCAATTAAATTTCCCTTGTCCA
GACTACTAAATATATGAACATTCCAAAGAAAATTTATGAAGTAGGAAAATGATAGAGTATTAACCAGATTTAGATCCATT
AACATTCATTCCTGTAAATCAAAACAAGTTCACGGCTGAATCCTCTTGGA---------------------AGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGATCACGGAGGTTGCTTGGGGG-GATAAATA-----------------------------
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AGTGGAGAGAAG------------GGAGGGGAATACTACCTGCATGTGATGGGCACTTGAGTAGGCGACGGAGCCCTCGC
GGCTAAGTGCGAAGATTCACAGCTATGCGGAGCCGCGGAACGGCGTGTGCTCGTCGCAGAAGATGAGTTGCGGCGGTGCT
GAAGGATGGGGATTGCTTCTTGCGGGGGCTCATGGTGGTGGCCTGGAGGGAAAGGCGCGCGGCCTGCTGGGGTGGCGATG
GGCAATCGCGACGGCGAGTTGGCGTCGTCAGGAGGCAGCGCGAG--------GGAGGAGGCGGGCTGCACAACGGTGGTG
GTTAGTGGAGGAAGAAGGTCGTGCTGCTCGGGAGCAGATAAGATTTTCCTTT----TTTTAGTGGAGAGATGGACCGAGC
GTGTGAGGTCGCTGTCCGCTGCCGCGTAGCGCGGCCGCTCGATCTCGTGAAACAGTGCGCGTGCACTTTTAAGATTTTAG
G-------------------------------------------------------------------------------
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>chr3D_1
ACATGTAGATGAACTGCATAGACATCAAAAATCTGATTGCTCCCATCAATATCCGGCAGATTAGACTATAGTTGTTACAC
TACAAATTTGTATTTTCTACTCCAGCTGCCATAG-AAAACCCAAGTTGAATCAACATTGCAATTAAATTTCCCGTGTCCA
GACTACTAAATATATGAACTTTCCAAAGTAAATTGATGAAGTAGGAAAATGACAGAGTATTAACCAGATTTAGATCCAAC
AATATTCATTCCTGTAAATCCAAACAAGTTCACGGCTGAATCCTCTCAA--------AGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGATCACAGAGGTTGCTTGGGGG-GATAAATC-----------------------------
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AGTGGAGAGAAG------------GAAGGGGAATACTACCTGCATGTGATGGGCACTTGAGTAGGCGATGGAGCCCTCAC
GGCTAAGTGCGAGGATTCACAGCTGTGCGCAGCCGCGGAGAGGCGTGTGCCCATCGCAGAAGATGAGTCGCGGCGGCGCC
GGAGGTTGGGGATTGCTTCTTGCGGCGGCTCATGGTGGCGCCCTGGAGGGAAAGACACGAGGCCTGCTGGGGTGGCGATG
GGCAATCGCGACGGCGAGTTGGCGTTGTCAGGAGGCGGCGCGAGGGAGGACCGGAGGAGGCGGGGTGCACAGCGGCAGTG
GTTAGTGGAGGAAGAAGGTCATGCTGCTCGGGAGTGGATAAGATTTTCCTTTTTTCTTTTAGTGGAGAGATGGACCGAGC
GTGTGAGGTTGCTGTCCGATGTCGCGTAGCGCGGCCGCTCGGTGTCGCGAAACAGTG----TGCACTTTTAAGATTTTAG
G-------------------------------------------------------------------------------
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>chr5D_1
ACATGTAGATGAACTGCACAGACATCAAAAATCTGATTGCTCCCATCAATATCCGGCAGATTAGACTATAGTTGTTACAC
TACAAATTTGTATTTTCTACTCCAGCTGCCATAG-AAAACCCAAGTTGAATCAACATTGCAATTAAATTTCCCGTGTCCA
GACTACTAAATATATGAACTTTCCAAAGTAAATTTATGAAGTAGGAAAATGACAGAGTATTAACCAGATTTAGATCCAAC
AATATTCATTCCTGTAAATCCAAACAAGTTCACGGCTGAATCCTCTCGA--------AGAGAGAGAGAGAGANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------------------------------------------
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-----------------------------------CTACCTGCATGTGATGGGCACTTGAGTAGGCGATGGAGCCCTCAC
GGCTAAGTGCGAGGATTCACAGCTGTGCGCAGCCGCGGAGCGGCGTGTGCCCATCGCAGAAGATGAGTCGCAGCGGCGCC
GGAGGTTGGGGATTGCTTCCTGCGGCGGCTCATGGTGGCGCCCTGGAGGGAAAGACGCGAGGCCTGCTGGGGTGGCGATG
GGCAATCGCGACGGCGAGTTGGCGTTGTCAGGAGGC-GCGCGAGGGAGGACCGGAGGAGGCGGGGTGCACAGCGGCGGTG
GTTAGTGGAGGAAGAAGGTCGTGCTGCTCGGGAGTGGATAAGATTTTCCTTTTTTCTTTTAGTGGAGAGATGGACCGAGC
GTGTGAGGTCGCTGTCCGCTGTCGCGTAGCGCGGCCGCTCGGTGTCGCGAAACAGTGCGCGTGCACTTTTAAGATTTTAG
G-------------------------------------------------------------------------------
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>chr5D_1
ACATGTAGATGAACTGCACAGACATCAAAAATCTGATTGCTCCCATCAATATCCGGCAGATTAGACTATAGTTGTTACAC
TACAAATTTGTATTTTCTACTCCAGCTGCCATAG-AAAACCCAAGTTGAATCAACATTGCAATTAAATTTCCCGTGTCCA
GACTACTAAATATATGAACTTTCCAAAGTAAATTTATGAAGTAGGAAAATGACAGAGTATTAACCAGATTTAGATCCAAC
AATATTCATTCCTATAAATCCAAACAAGTTCACGGCTGAATCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGAAGGGGAATACTACCTGCATGTGATGGGCACTTGAGTAGGCGATGGAGCCCTCAC
GGCTAAGTGCGAGGATTCACAGCTGTGCGCAGCCGCGGAGCGGCGTGTGCCCATCGCAGAAGATGAGTCGCGGCGGCGCC
GGAGGTTGGGGATTGCTTCCTGCGGCGGCTCATGGTGGCGCCCTGGAGGGAAAGATGCGAGGCCTGCTGGGGTGGCGATG
GGCAATCGCGACGGCGAGTTGGCGTTGTCAGGAGGCGGCGCGAGGGAGGACCGGAGGAGGCGGGGTGCACAGCGGCGGTG
GTTAGTGGAGGAAGAAGGTCGTGCTGCTCGGGAGTGGAGAAGATTTTCCTTTTTTCTTTTAGTGGAGAGATGGACTGAGC
GTGTGAGGTCGCTGTCCGCTGTCGCGTAGCGCCGCCGCTCGGTGTCGCGAAACAGTGCGCGTGCACTTTTAAGATTTTAG
G-------------------------------------------------------------------------------
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>chr1D_1
ACATGTAGATGAACTGCACAGACATCAAAAATCTGATTGCTCCCATCAATATCCGGCAGATTAGACTATAGTTGTTACAC
TACAAATTTGTATTTTCTACTCCAGCTGCCATAG-AAAACCCAAGTTGAATCAACATTGCAATTAAATTTCCCGTGTTCA
GACTACTAAATATATGAACTTTCCAAAGTAAATTTATGAAGTAGGAAAATGACAGAGTATTAACCAGATTTAGATCCAAC
AATATTCATTCCTGTAAATCCAAACAAGTTCACGGCTGAATCCTCTCGA--------AGAGAGAGAGAGAGAGATCAGAT
--------------------------------------------ATAAATC-----------------------------
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AGTGGAGAGAAG------------GAAGGGGAATACTACCTGCATGTGATGGGCACTTGAGTAGGCGATGGAGCCCTCAC
GGCTAAGTGCGAGGATTCACAGCTGTGCGCAGCCGCGGAGCGGCGTGTGCCCATCGCAGAAGATGAGTCGCGGCGGCGCC
GGAGGTTGGGGATTGCTTCCTGCGGCGGCTCATGGTGGCGCCCTGGAGGGAAAGAAGTGAGGCCTGCTGGGGTGGCGATG
GGCAATCGCGACGGCGAGTTGGCGTTGTCAGGAGGCGGCGCGAGGGAGGACCGGAGGAGGCGGGGTGCACAGCGGCGGTG
GTTAGTGGAGGAAGAAGGTCGTGCTGCTCGAGAGTGGATAAGATTTTCCTTTTTTCTTTTAGTGGAGAGATGGACAGAGC
GTGTGAGGTCGCTGTCCGCTATCGCGTAGCGCGGCCGCTCGGTGTCGCGAAACAGTGCGCGTGCACTTTTAAGATTTTAG
G-------------------------------------------------------------------------------
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>chr4A_1
ACATGTAGACGAACTGCATAGACATCAAAAATCTGATTGCTCCCATCAATATCCGGTCGATTAGACTCCAGTTGTTAAGC
TACAAATTTGTATTCTCTACTCTAGCTGCCATAG-AAA-CTCAAGTTGAATCAACATTGCAATTAAATTTCCCTTGTCCA
GACTACTAAATATATGAACATTCCAAAGTAAATTTATGAAGTAGGAAAATGATAGAGTATTAACCAGATTTAGATCCATT
AACATTCATTCCTGTAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AGTGGAGAGAAG------------GAAGGGGAATACTACCTGCATGT---------------------------------
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>chr3B_796
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-----AAATTAGAAACAACTAGACCTCCATCTGGGCTTCGTCCTAGAAAAGGCCTCCAACTGGGTTACCTTCCCAGCCAA
GCCGAAACCCTAGGCAAGCACGCAGCCGCCGCGTATCCCGCCCCGACGGCCATAGCCGCGGCTCTAC-TTTCAGCCGAAA
TCCAGCAATCCCCGTCCCAGAACACCACAACCCGC----------GGATCGAAGAGGCGGAGAAGATGACGCAGAAGCAG
ACCATGTTCAAGGGGCAGACCAAGAAGAAGTCCATCCCTCCCAGCCGCCATGGCAAGGCGCCCCACATCCGCAAAGGTTT
GTGCCCCAGCCGACTGCTTTTGCTTTT-CAGTTTGTCTATATGTCACATCTAGACCCTTTGCTTTTCTGCTTGGTCGATG
GTGCCGTATGCTTGCTAGCTTGTTTGTTTGATTGGCTGGTTGATGGATTCCTGTAGGGAAGAGGGCCGTGAAGCCGACCA
AGTGCACCAAGGACATGGACGCCGACAAGGTATGGTATAGCTTGTAAATTTGTCGCCCTATCGGTCAGGAGTCAGGAGGC
GCCGTCTTCCGTTAGGAAAATCAACATTGGTTGGTGTAATTAGGTTGCACCAGAGGCGATTGTGTA-GAGAGGCTGCCAC
GAATGCCAATCTGAACTGACTGTTTCTGAATTTTTTTGCCAACACCTCTAATA----TACGTATCTTACATCTTACTAGC
TGTTGTGTTTTAGTTGATGGTTCAGGATGC--------------------------------------------------
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---------------------------------TTCCAAATTAATGTATTACCTATCTCCTGTAACACCTGATGTGGAAT
TTGAGAACTGTGTTGCTTGTCGACATTCTACATATCTGCCTAGCTCTGGTTTAATCCATAAATTCATACTACTTGACATT
TTAGATTCATTGGGTTTCCCAATTTCCATTTATCACAACAAGACTGGTATTTCATTTGACCATGTAAAGTTTGTAGTGTC
ATACTGTTACGAATCTTGATCCACGATGAGATAAGTTGGGTAGGGTAAAGGTCTGTAGACCAGGATTTTTTAGTGCACTC
GCCCCCAACAATCCAGCGACAGGGCTCGTCCCTGGCCAGCGTCTGAGGCTCAGAGAACTTTTGTTTATTTGTTTATTTCT
TTGCTTGTTTAACCTTGTTACTACATGATAGTCCTTTATATAGGACAACTAACTTGATTCACAAGTACAATCCAGATTCA
TACTCGCAATAGTCCAGCATGAAAACTGGATGATAATTGACCTGTGTGTGTA-------GAAGACAATATTTTGAACTAC
CGATACTTAGGTTGAAATTTATTTAGCATGATTCTGTATGCTTTCTTTGTTTTGTGAGCTCCAAAAAATCAGTGTAATAT
CAGTAACCCCTTTCATCAGTGCAAGAAAGGCGTTAGATGTGTAGAGTTTACCCATTCTACAGTGATCATCATTGTTGTAT
CTATTTT-------------------------------------------------------------------------
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---------------------------------CGAAGACACCCATATACACGCAGACATAAATCTTACGATTCGTTTAT
ATATTTCGCGATTGTTGTTTTGGTGGCGTTTCTCATTGTAGCCATAAAGGTAGTTTTTCTTTGTATTTCTGTACAGTCTA
TCTGTGTTCTTTATCACAGAGTGTGCACACCATGGTAACACCATTTTTTCTCTCCTTTCCTTTGTAAGCCGCGCTACAAT
ACTTCTCTTCCAATAAGACCAATAGCGCAATCCTTTGACATTTGAGTTTAACAGT-ATGCTGTGAATCAACTAGTGGGCA
ATAACATACTGTGAAGTGTGAACCAACTAGTTTGTAATCAAGAAAAACAGATCAGGCCTTTGAATTTATCATAACTTCTG
ATTTAAAACATTGTATTTGTTTAATGATCCTGTAATGTGGTTCATATATCGATTTTGTTTTTGCTAACAATCAATACAAT
TTATGAATTTTCAGGACCTCACAAAGTTCATCAACCATGCTAATGAAATAAAAGCTGCAAATAAGGCTAGCAAAGAAGGT
GGCGACCTCAGCATAGTGAAGTCCGACGCGGATACTTCCAACTCGAAGCAGTAGGCTGGAGGCTTATGCTGCTTACTGCG
ATGCGCAATACAAGATCAGTGTGTGAAATGATCCATATATCATGTTTTCATGTAGAGAGTATGTTTAGTTCACTCTACAT
CATGTTGTAATCTGTAACCAGTTTTGTGAAATCCAAGTTTTGTCCTGTGAATCTCTTTTCGGGATGCTAAAAGGCTAGAT
TATCTGTAGCCTCCCCAAAAGCCTTCTCCGATGTCAC----TTGCGAGTTACTACAACTCTCTAGCCTGTCTCTCAAAAC
TGTATAACTACCAAATCTTGCTTGGGACCTTGGTGGGAGTAAACTTCCTTTCATAAACTGCCGCCAAAGACCAAAG----
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>chr3D_796
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-----AAATTAGAAACAACTAGACCTCCATCTGGGCTTCGTCCTAGAAAAGGCCTCCAACTGGGCTACCTTCCCAGCCAA
GCCGAAACCCTAGGCAAGCACGCAGCCGCCGCGTATCCC----CGACCCCCATAGCCGCGGCTCTACGTTTCAGCCGAAA
TCCAGCAATCCCCGTCCCAGAACACCACAACCCGCGGCGACTGCTGGATCGAAGAGGCGGAGAAGATGACGCAGAAGCAG
ACCATGTTCAAGGGGCAGACCAAGAAGAAGTATATCCCTCCCAGCCGCCATGGCAAGGCGCCCCACATCCGCAAAGGTTT
GTGCCCCTGCCGACTGCTTTTGCTTTTTC--------------------------------------TGCGTCGTTGATG
GTGCCGTATGCTTGCTCGCTTGTTTGTTTGATTGGCTGGTTGATGGATTCCTGTAGGGAAGAGGGCCGTGAAGCCGACCA
AGTGCACCAAGGACATGGACGCCGACAAGGTATGTTACAGCTTGTAAATTTATCGCCCTATCGGTCAGGAGTCAGGATGC
GCCGTCTTCCGTTAGGAAAATCAACATTGGTTGGTGTAATTAGGTTGCAGCAGAGGCGATTGTGCA-GAGAGGCCGCCAC
GAATGCCAATCTGAACTGACTTTTTCTGAATTTGTTTGCCAACACCTGTAATATACGTA----TCTTACATCTTACTAGC
TGTTGTGTTTTAGTTGATGGTTCAGGATGCGAGTCGGCACCTCCTGAACCCAGGGGCATATGCACCCACTTTTTGAAAAA
TGCATTTTAAGCACGTTTTAAAATGTTGAAAATTTTAAAAGAAAAGTCCACGCATACATGTTCACAAATGTGTGTGCGCG
GCACAAAGTTTTGTGAAAAAATGTTTTTTCGTTTTGTCTCCGTAAAAAGGACAAATTTCAATGCTTCTAAATAGCGTTTT
ACGACACAATTTTTTGTCTTTTTTGCACAGGCCACAAAAGAAAGTTATTTTTCCATGAAACTTTATGCACGCACATAAAA
CATGAAGACGTACCCGTGTAACCTGTTTCAGATTTGTTTAGCATTTAGAAACGTGTTTTTCAAAGTGGGTTCATATGTAC
CCGGGTTCATCGATGCACTTTCCTTCAGGATGCCTCCAAATTAATGTATTACCTATCTCCTGTAACACCTGATGTGGAAT
TTGAGAACTGTGTTGCTTTTCGACATTCTACATATCTGCCTAGCTCTGGTTTAATCCATAAATTCATACTACTTGCCATT
TTAGCTTTATTGGGTTTCCCAATTTCCATTTATCACAACAAGACTGGTATTTCATT-GACCATGTAAAGTTTGTAGTGTC
ATACTGTTACGAATCTTGATCCACGATGAGATAAGTTGGGTAGGGTAAAGGTCTGTAGACCGCGA-----TATTGCACTC
GCCCCCAACAATCCAGCGACAGGGCTCGTCCCTGGCCAGTGTCTGAGGCTCAGAGAACTTTTGTTTATTTGTTTATTTCT
TTGCTTGTTTAAACTTGTTACTACATGATAGTCCTTTATATAGGACGA--GACTTGATTCAAAAGTATGATCCAGATTCA
TACTCGCAATAATCCAGCATGAAAACTGGATGATAATTGACCTGTGTGTGTAGATTGTAGAAGACAATATTTTGAACTAC
CGATACTTAGGTTGAAATTTATTTAGCATGATTCTGTATGCTTTCTTTGTGTTGTGAGCTCCAAAAAATCAGTGTAATAT
CAGTAACCCCTTTCATTAGTGCAAGAAAGGCGTTAGATCTATAGAGTTTACCCATTCTACAGTGATCATCATTATTGTAT
CTATTGTCGAAGACACCCATATACCGAAAAAGGCTTTCGCCCCGCTTTATAAATAAAGCAACCACCAAGCACAGAGTAAC
AAGGTAACAACGGAACACGGAACACACCCACACAACGCCACCGCAGGCAGGGTCCAACACACACACACACAAACACACAC
AGACCGAAGTTCCGCTGTGGGCACAGCACAACAAGCCCAGCACAGACGCACTAAGAAACGCCCCAAGACGGCGGCGGCGG
AGGCATGAATCATTGTTTATATCAAGACGGCGGCGAAGACACCCATATACACGCAGACATAAATCTTAGGATCCGTTTAT
ACATTTCGCGATTGTTGTTTTGGTGGGGGTTTTCATTGTAGCCATAAAGGTAGTTTGTCTCTTTATTTCTGTACAGTCTA
TCTGTGTTCTTTATCACAGAGTGTGCACACCATGGTAACATCATTTTTTCTTTCCTTTCCTTTGTAAGCCGCACTACAAT
ACTTCCCATCCAATAAGGCCAATAGCGCGATCCTTTGACATTTGAGTTTAACAGTT-TGCTGTGAATCAACTAGTGGGCA
ATAACATACTATGAA-------CCAACTAGTTTGCAATCAAGAAAAACAGATCAGGCCTTTGAATTTATCGTAACTTCTG
ATTTAAAACATTGTATTTGTTTAATGATCTTGTAATGTGGTTCATATATCGATTTTGTTTTTGCTAACAGTCAATACAAT
TTATGAATTTTCAGGACCTCACAAAGTTCATCAACCACGCGAACGAAATAAAAGCTGCAAATAAGGCTAGTAAAGAAGGT
GGCGACCTCAGCATAGTTAAGTCCGACGTGGATACTTCCAACTCAAAGCAGTAGGCTGGAGGCTTATGTTGCTTACTGCG
ATGCACAATACAAGACCAGTGTGTGAAATG--------ATCATGTTTTCATGAAGAGAGTATGTTTAGTTCACTCTAC--
-ATGTTGTAATCTGTAACCAGTTTTGTGAAATCCAAGTTTTGTCCTGTGAATCTCTTTTCGGGATGCTAAAAGGCTAGAT
TATCTGTAGCCTC----AAAGCCTTCTCCGATGTCACACTTTTGCGAGTTACCACAACTCTCTAGCCCGTCTCTCAAAAC
TGTATAACTTCCAAATCTTGCATGGGATCTTGGTGGGAGTAAACTTCCTTTCATAAACTGCCGCCAAAGACCAAAG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ACATCTGCATCCCTGCTCGCTCACT
GCCTC----------------------------------------GGCTCCTTCCGTCCAAGAGATTGTGGTCGTATCGG
TACTCTCCCTGCAGCCAATGCGCCTGTGTTGTCCGGTCATTGCCTTTTCTGCACCGTGAGCTCTCCGCCTACAGAGTCTC
GGCCTTTTCTGCACTGTA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>SNPs
----------------------------------S--------------------------------------S------
--S-------------------------------S--------------------------------------S------
--------------S-----S-----------------------------S-----------------------------
------------------------------------------S-------SSSSSSS-----------------------
--------------------------------S---------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
---------S-----S----S-S----------------------------S-----------------S----------
---------------------------------------S--S-----------------S------------------S
-------------S---------S-S----S---------------------------------S---------------
--------------------------------------------------------------------------------
S----------------SS---S---S-------------------------S--------------S------------
-SSSS---S---------------------------------S----S-S------------S-------S---------
--------------------------------------------------------------------------------
---S-S---------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
---------------------------------S-------S------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
------------S-------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------S-S------------------S------------------S-------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
------------S------------------------------------S------------------------------
------------------------------------------------------S----------------S--------
----S----------S---------------------------------------S------------------------
-----------------------------------------------S-------------------------------S
-----------SS------------------------------S-----S------------------------------
S-------------------------------------------------------------------------------
--S---------------------------------------------------------------------------S-
-------S----------------------------------------------------------S-------------
------------------------------------S------S------------------------------------
--------------------S----------------------------------------------------------S
----------------------------------------------------------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-----S-S-----
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---------S----S--------S-
------------------------S----S----------S--------------S------------------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_979
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
ATGTGAGGTCGCTGTCCAT-------------------------------------------------------------
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>reverse_3376
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---------------TGACCAATAGCGCGATCCTT---------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------
>forward_1111
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GCCTCCAACTGAGCTACCTC---------
--------------------------------------------------------------------------------
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-----------------------
>reverse_3683
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--TGACCTCAGCATAGTGAAGTCC--------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------
>forward_2494
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------CACTC
GCCCCCAACAATCT------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------
>reverse_4313
--------------------------------------------------------------------------------
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------------------------------------------------------------------------GGTTCACT
GCCTTGAGACGA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
