>input_sequence_44610
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----------------------------------------TGATAGTGGTGCGCAAGTGGGACACCCATGGTCGCGTACG
AAACCGTGTACAGGTGGCTCCATTTTGCATTGACTTTGGAGAGCGCTTCCGTGACCCTGAAATTTCAACCAAGTTTGGAT
GGGATGGAAGAGCAAGATCGCTTGTGGCATTTTAAAATGCAGTTGCTTCGCCACAAATGAAATCGATTTAATTTGCTTCC
GATAGACATTTTTGCAGTAATGGAGTGGAAGGGCGGCTTCCAGGTGCTTCGTCGCCTCCTCCAGCTGGAGCCGAGGGGAT
CGACCGAGCCGCGCGCCGAGGACGAGGAGGCTCCGACGGCGACGGGGGAAACCTGCGAGATCGCGCGCCTGCCGGAGGAG
CTCCTGTCGGTGGCGCTGTCCCTCACGGCGCCGCGCGACGCCTGCCGCGCCGCCGCGGTCTCCCCGGCATTCCGCGCCGC
GGCCGACTCCGACGCCGTCTGGGCCTGCTTCCTGCCCAGCGCCCGCGACCTCCCGCCGCTGGCCGACGGGGAGCCGCCGC
CGC---GCAGCAAGAAGGACCTGTTCCGCCGCCTCTCCGGCAGCCCCATCCTCCTCCCAGGCGGACTCGTGGTACGTAAA
GCG--------------------GGTGTATACGGCGGCGCGCGGGCAGGGATTTGGCTGGTCGCTAATCAGCCGTGTGTG
CGC----------------------------------------------GTGCAGAGCATGTGGCTGGACAGGGAGACCG
GCGCCAAGTGCTACATGGTGGCGGCGAGGGAGCTGTACATCTGCTGGGGCGACACGCCGCAGTACTGGACCTGGATCCCT
CTCGCCGACGCTAGGTTCCTTCCTAATCCTTTTCGCTTT---CCTTCCAGTCCCCGAGTCCCGTTGCAGCTAACTTGTGC
TGCTGGCCTGCCTGAATGATGCTGCCTTCCTTGTCATCGCCATTATCCTTATCTGATTGACTGCAATTGCATACTAATAC
TAGTAGTAGTTGAAATCAGTTTTGGTGATACAGTATATATTTAGAGTTTCAGACATGCCAAGTTGAAGTCAGTTTCTTTG
GACATTGGAATACCGCTGTACTGTCTATATGCCATGGTCCTTGTTTCTTGGACAGTGGAATGTGACTCTATGGACTATGG
TGTAGTACCTTATTCAAACTAGAGCTTAATGTGTGTCTCTGAAGATGGCTCTCTGCGACCTTTCTCTGTTGATTGGTTTT
CACCTTGGTTACAACATCCTAATGAACCCTATACTGGACTCCAGGTTTTCGGAGAGTGCTCAACTCAGACAAGTCTGCTG
GCTGGATATCTGCGGCAACATACATAGCAACATGCTGACCCCAGGCTCAGCCTACGCCGCGTACATGGTGTACAAGTTGG
CCGACGATTCCTATGGACTGGACTCGCCAGCCCAGGCATCGGTCAGCATTGGAGGCATCAACCGATCAACCCGCAAGGTC
AGCCTGCAGCTCCATGCTGGCAGTGGGCAGCAAAGAAGCACGAGAAGAAACCGCCGCCGTGCAGTTGAGGACGCAGTGCT
CCCTTGCAAAAGAGCCGACGGTTGGGTGGAGCTGGAGCTGGGTGAGTTCTTCTGTGAGGGGGGTGAAGACGGCGACGTGT
CCTTCGGCCTCGCGGAGACGCAAGAACTGGGCTGGAAGAGTGGTCTCATCGTGCAGGGCATCGAGATCAGGCGTAAGAAA
TTGGGCTAGTTAATCAAGGAGCTTCTACGCGTGCAGGTTTACTTTAATCCAGTAAGTAATAATGTACTGTATTGTAT---
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>chr5D_1_TraesCS5D01G035000
TCTATCTCCTTCAGAAGCCGGCCGTAGGACTGCTGCCAAACATGAGATCCATCGTCACAATGCTTTCCTCGCTTCTTATT
GGCCTCGACGGGCTAATGTCAAATCATCTCTGTCAGAGATGTCTTTGATTTGGAGAAATTTAATATAAAAAAAATCATAT
GATAGGATCTCTATAGGAAATGTTTCTTTAGAGCCCTTCAATTTATAAGAAAGGATTCATATTCCTACATAGGAATGGTC
ACCATCCTCCGTATTTGAAAGAAAAATAAACATGAGTCTAGACTCAATGAGAAAAAAAAACCTATCTCGTGAAACAAATG
ACATATCTTTAATATTCCTATTCATAGAATTTTAGATTATGTCATCTCATTTCCTACAAATTTTCTATTCCTATTATATT
TCTACCCCATGAACCAGAGAATGCCTCAAAATACTTGCACATTTGAGCCTCCACTAGATTCCATGTAGATCATAGTCACT
AGCTAGTTCAGAACTAGTCAAGGCGGGACTCTAGTAGATCTTCGCGTTTCGCGCCTCAGCTGCAGCGGCATTTGCGGCTA
ACCTCCATTGTGTGAGCGACCTAGCGCTCCTCCTCATCTGTCAGGAAGTCGCAGTAGCACACAAGGTCGCTCACTATTTA
TCTCTCGAGGTTCGTCCGCACAACCGGGTGAGATGTGAAACACAACATCATTTTTCGAGGACATCGTCCGCTCGCATTCG
CTGAAAGTCATTTTCTATGTGTTCAACTGTTCTATGCATGTGGTCGCTTTACGGCCGCGACATGCTCTGCTTGCGGTTGG
GGCCGGCGCATGATCACGATTGAGGCGTCATGGATGCGGTTGCGGCGCGCGCATAGTCATCATGTAGTTACACACTGCAA
AAACTGTCATACGGAAGTACTGATATTACAGACTGTCCAGCCCCATTTATCTCCGCGGCCATTAACTGTGTCTCTTCAAC
CGTTTGATTGCGCGCCACGACACAAGAACCACGCCCACTATGATAGTGGTGCGCAAGTGGGACACCCATGGTCGCGTACG
AAACCGTGTACAGGTGGCTCCATTTTGCATTGACTTTGGAGAGCGCTTCCGTGACCCTGAAATTTCAACCAAGTTTGGAT
GGGATGGAAGAGCAAGATCGCTTGTGGCATTTTAAAATGCAGTTGCTTCGCCACAAATGAAATCGATTTAATTTGCTTCC
GATAGACATTTTTGCAGTAATGGAGTGGAAGGGCGGCTTCCAGGTGCTTCGTCGCCTCCTCCAGCTGGAGCCGAGGGGAT
CGACCGAGCCGCGCGCCGAGGACGAGGAGGCTCCGACGGCGACGGGGGAAACCTGCGAGATCGCGCGCCTGCCGGAGGAG
CTCCTGTCGGTGGCGCTGTCCCTCACGGCGCCGCGCGACGCCTGCCGCGCCGCCGCGGTCTCCCCGGCATTCCGCGCCGC
GGCCGACTCCGACGCCGTCTGGGCCTGCTTCCTGCCCAGCGCCCGCGACCTCCCGCCGCTGGCCGACGGGGAGCCGCCGC
CGC---GCAGCAAGAAGGACCTGTTCCGCCGCCTCTCCGGCAGCCCCATCCTCCTCCCAGGCGGACTCGTGGTACGTAAA
GCG--------------------GGTGTATACGGCGGCGCGCGGGCAGGGATTTGGCTGGTCGCTAATCAGCCGTGTGTG
CGC----------------------------------------------GTGCAGAGCATGTGGCTGGACAGGGAGACCG
GCGCCAAGTGCTACATGGTGGCGGCGAGGGAGCTGTACATCTGCTGGGGCGACACGCCGCAGTACTGGACCTGGATCCCT
CTCGCCGACGCTAGGTTCCTTCCTAATCCTTTTCGCTTT---CCTTCCAGTCCCCGAGTCCCGTTGCAGCTAACTTGTGC
TGCTGGCCTGCCTGAATGATGCTGCCTTCCTTGTCATCGCCATTATCCTTATCTGATTGACTGCAATTGCATACTAATAC
TAGTAGTAGTTGAAATCAGTTTTGGTGATACAGTATATATTTAGAGTTTCAGACATGCCAAGTTGAAGTCAGTTTCTTTG
GACATTGGAATACCGCTGTACTGTCTATATGCCATGGTCCTTGTTTCTTGGACAGTGGAATGTGACTCTATGGACTATGG
TGTAGTACCTTATTCAAACTAGAGCTTAATGTGTGTCTCTGAAGATGGCTCTCTGCGACCTTTCTCTGTTGATTGGTTTT
CACCTTGGTTACAACATCCTAATGAACCCTATACTGGACTCCAGGTTTTCGGAGAGTGCTCAACTCAGACAAGTCTGCTG
GCTGGATATCTGCGGCAACATACATAGCAACATGCTGACCCCAGGCTCAGCCTACGCCGCGTACATGGTGTACAAGTTGG
CCGACGATTCCTATGGACTGGACTCGCCAGCCCAGGCATCGGTCAGCATTGGAGGCATCAACCGATCAACCCGCAAGGTC
AGCCTGCAGCTCCATGCTGGCAGTGGGCAGCAAAGAAGCACGAGAAGAAACCGCCGCCGTGCAGTTGAGGACGCAGTGCT
CCCTTGCAAAAGAGCCGACGGTTGGGTGGAGCTGGAGCTGGGTGAGTTCTTCTGTGAGGGGGGTGAAGACGGCGACGTGT
CCTTCGGCCTCGCGGAGACGCAAGAACTGGGCTGGAAGAGTGGTCTCATCGTGCAGGGCATCGAGATCAGGCGTAAGAAA
TTGGGCTAGTTAATCAAGGAGCTTCTACGCGTGCAGGTTTACTTTAATCCAGTAAGTAATAATGTACTGTATTGTATAGG
GGAAAGGAACCATATCTGTTTGTAATGCATGTTTCTGAACTGATACCTTTGTTTCATGTTAAAAGAAGGAACAGTTAAAC
AAGACAGGAATGTTGAGATTTTCATAGGCATTTCTTCTCATTGGTGATATTGGATTAATTGCATTCCGTTCTTTGCAAAT
GTACTTACACTTGTCTAATGATTTTCCTACATCAGGCAGCAGGCTGAGGTTTCCGATGGATGAGTTCAAATTATAGGTGC
AGGGTCTAATTATAGTCAACATTCAGAAACCTGTATGGCCATGCCATGTTCTCTGCAATCTCTCCTCTGTCCTCAGCATA
TAATGGGCTGCATCACAGATGAACTGTAGAAACTACTCCCTCTGTTCCAAAATATAAGTCTATTTAGAGATTCCTATATG
GACTACATCCGAAGCAAAATGAGTGAATCTACACTCTAAAATACGTCTATATACATCCGTATGTAGTTTATACTGAAATA
TCTAAAAGTACTTATATTTAGGAACGGAGGGAGTAGAAATGAGTAAGATATTTCAGTAATACTATTGTTCTTGGCTGTTC
TTTTTTTATTGCCAATTGTATAGAAATGCCATGGCCCATGGTGATGAGTCTACTGATGATTTTCTGTTCAGTTGATGGCA
TGATTAGTCGATTAGACATAAGGTTTCTAACATGGGGGTTACAAGTGGAGCAGGTACAGGTGCCAAAGCTGCAATTGGAC
CCATTAAAACTTCGCTAAGCCAATTAATCAACATAGCTTTAAGCACACACACACAACAATGGTCAGCATCAAAAGGCGCC
ATGCCTTTTGCAACCCTGCAATGGCTGTGAGAGCAAGTACTCTCTGACCTGGCCACAATGCTCTTGTTTCTCCTGTGCCA
TGAATGAACTGGCAAGGGTGCATAAAAACTAGATCGGAAGTCCAAAGAAAATTACAACACTTTTTCAGGACTAATGAGAT
TAATATAGATCACAAACAGTAGAGATATACTAAAAAC
>chr7A_1332
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---------------------------------------------------CCTGCGAGATCGCGCGCCTGCCGGAGGAG
CTCGTGTCGGCGGCGCTCTCCCTCACGTCGCCGCGCGACGCCTGCCGCGCCGCGGCGGTCTCCCCGGCCTTCCGCGCAGC
CGCCGACTCGGACGCCGTCTGGGCCTGCTTCCTACCGCTGCTCGCCGACCAACCGCCGCTCGCTGACGGAGAGGCGCTGC
TGGCGTGCGGGAAGAAGGACCTGTTCCTCCGCCTCTCCGGCAGCTCCGTCCTCCTCCCAGGCGGACTCATGGTACGTAAC
TTAGTAACTACGTAT-------------ACAGGGCCAAGCCCAAT--------------------AGCAAACCCATGGAC
TATATTTGTTCGATTGCTAATGAATTCAACTCGCGATG-----------GTGCAGAGCATGTGGCTGGACAGGGAGACCG
CCGCCAAGTGCTACATGGTGGCGGCGAGGGAGCTGTCCATCGCGTGGCGCGACACACCGCAACACTGGACCTGGATCCCT
CTCGAGGACTCCAGGTTCCTTCCTACCTCCCTTTTGTTTTACCCTTGCAGTTCCCC------------------------
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>chrUn_1332
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---------------------------------------------------CCTGCGAGATCGCGCGCCTGCCGGAGGAG
CTGCTGTCGGTGGCGCTCTCCCGCACGTCGCCGCGCGACGCTTGCCGCGCTGCGGTGGTCTCCCCGGCCTTCCGTGCCGC
GGCCGATTCCGACACCGTCTGGTCCTGCTTCCTGCCACCGCTGGACGAACTCCCGCCGCTCACCGACGGAGAGCCT----
-----TGCAGGAAGAAAGACCTGTTCCTCCGCCTCTCCGGCAGACACGTCCTCCTCCCAGGCGGACTCATGGTACGTACA
CTAACAATACTCCTCGTGGTCTCGGTGAATACGGCGGATCCCAAC--------------------AATCAGCCCTTGTAA
GAAATTTTGCCTCTCCGTTGATCTCGCTGGCCATTTCTATCGGTGCCATGTGCAGAGCATGTGGCTGGACAGGGAGACCG
GCGCCAAGTGCTACATGGTGTCGGCGAGGGCGCTGTCCATCGCGTGGCGCGACACTCCACGCTACTGGAACTGGGTCCCT
CTCGCAGATTCGAGGTCCCCTCC---------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
-----------------S---------S-------------------------S--------------S-----------
------------------------------------SSSSSS-SS---------------S--------S-------S--
S-S-------S----------------S-------------------S--------------------S-----------
SSS------------------------S---------S--S-SSSSSSSSSSSSSSSSSSSSSSS--------S-SS-SS
SSS-----------------------------------------------------------------------------
------------------------------------S----SSS---S-------S-----S------------------
-----S---S-S-------------SSS-SS--SSS----------S----S---SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_678
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------------------CACAACCGGGTGAGATGTGA------------------------------------------
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>reverse_2697
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--------------------------------------------------------GGCATCGAGATCAGGCGTAA----
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>forward_2299
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---------------------------------------TCCAGGTTTTCGGAGAGTGC---------------------
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>reverse_3500
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-----------------------------------------------------------GTGCCAAAGCTGCAATTGGA-
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