>input_sequence_44606
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------ATGCCTCTGCC
GCCCCCGGGCATCA---TCCTTCGCGACGCGCGGACGCCGCGGGGGTTCGTCCAGCTCCTCG---------CCTC---CT
CCTCCCCGCTTCCGCCGAGCCCGTCCGCCGCGGCGCAGTGCCATGGGCTGGCCACCAAGCTCGGCCTCGCGGCTTGCAAC
GTCTTCGCGGGCACCGCCCTCCTCGCCTTCTACTGCCGCTGCCGCCGCCCGCGCGACGCCCAGCGACTGTTCGACGAAAT
GCCCGAGAGGACCGGCGTCACCTGGAGCGCGCTCGTCTACGGCCACGCGCGGTCCAGCGCGCCGGGCCTGGCCGTGGAGG
CTTTCGGACGCATGGTGCGTGCCGGCTTCTCCCCCACGGCGGCGGCCGTGTCCAGCGCCCTTGTCGCGTGCGCGAGGATG
GAGGACGCGGGCGTCGGGGCGATGCTCCACGCCGCTGGCCTCAAGTGCGGCAGCATCGTCTGTGGCAGCGTCGTTGTCGG
GACTGCGTTGGTGGACATGTACGCCAAATGCCGTGATGTTTCGGCTGCTCAGCGGGTTCTTGAGGAGATGGAAGAGAAGA
ATGTGGCCACTTTTACGTCTCTTGTCGGCGGGTTCGCCTCAGCCGGAAGACCTCGCGAGGCCATGGTGTTGGTCAGGGAG
ATGGAACAGTCAGGGGTGGCACCAAACATGATGACGTACAGCAGCCTTCTCAGCTCATTGGAGAGCCCCCAGGACCTAGA
CCATGGGAGGCAAGCGCATTGTGCGGTGGTAAAGAAGGGTCTCGAGCACAATCCGTATGTTCTGTCCACTCTTATGACCA
TGTACTCCAAGTGTGGCAGCTTAGATGATTTCAGGGAGGTACAGATGAGTGTTTCGTGTCAGGATCAGGTCACGCTCAAT
TCCATGATCTCGGGGCTCTCCTGTTTGGGAAGAGGCGACGAGGCATTTCAGCAGTTCTTGGAGATGAGACGGCATGGCGC
TGACACAGATATGTTCACCTTTGGCAGCATGCTGAAGGCTATAGGGAGCTCATCCTCACTGCTGGAGGGAAGACAAGTCC
ATGCTCTGATCCTCAAAACTGGGTATGAGTCTGCTGTGAATGTCCAGAACGGTTTGATCTCCATGTACGCCAGGCGCGGT
GAGATAGGGGAAGCCAGGGATGTTTTCACTTCGGTGGAAGCGCCTGATTTGGTCTCCTGGAATTCGCTTCTGACAGGATA
TGCTCAACATGGTTATGGCAAACAGGTGGTTGAGGTGTTTGAACGGATGAGGAGACTGAATGTTCATCCAGACAACACAA
CCTTCTTGTTGGTGCTTACAGCTTGCAGCCACGCCGGTTTGGTGGATACAGGGTTGGAGTACTTCAACTTGATGAAGACA
AACGGGTTTCTCGCAGGGGCGCGGCTAGAGCACTACGCGTGCGTGGTCGATCTTCTTGGACGAGCGGGCCATCTCCAAGA
AGCCGAGGCTTTGATCAACGACATGCCTATTGAACCTGGCGTCTCGGTGTACAGAGCTCTGCTTAGTGCCTGCCAGATCC
ACGGCAACCTTGAGATTGCGATCCGGGTGTCCACGCGCCTGGTCGAGCT--------CTACCCTCACGACTCCTCTGCCC
ATGTTCAGCTGTCAAAGGTCTTTGCCGGTGATGGCCACTGGGGTGATGCTGCCGAGGTCAGGGAGGCCATGGCAGGTAAA
GGGGTAGTGAAGAACCCTGCTTGGAGCTGTGTCGAGGACCGGGTACAGGTTGGATAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>chr3A_1_TraesCS3A01G523800
AAGCATTATTTGTACAACAAAGGTCATGCTGCAGGGAAATATTTGCAATAAAGGTTGTGTTACAGATTTTTTTTCTGCCT
TTCACATTTATGCAACATACATGATGTTGCGGAAGGATTTTTGCAACAAGGATGATGTTGCAGAAAAAAATATGAAAAAA
AGATCAAATTATGTACGTGCTAGCTACTTGTTGGTGCTTCATATGTTTGTAACATTGCCTGTGTTACAAACTTGTGTGTG
CAACATGCCTCATGTTGCAAAACTTGTTAAACTGTTTCGTGTAGAGCTACGTATCGTATGATTAAAATTAAATCGAACGG
TCACAGAGGCGATGGATACGAGCGACTCATCTGCCGGTTGGATGGTAACATTTCCCTTAAAATAAGGTCCTCCAATACAC
CCGGACTCCAAAAATCCACTCTTGCAATTGTATCTTATTAAAGAGTGACGGTGGACATATGCCTCAAAAATCAACTCCCC
CTCCCGTCGCCTCTCGCTTCTTTGCTTCTCGGCTTGGCGGCCGAACAATACCGTGAGACTTTACAAAT---ATGAGATTG
TTTTTGTCCTTTAGTTTACTTTGCAAAAGAATTGTTGAAGCAAAG-ATTATTGTGGGTAGGCATGGATGAGTTATGAATC
CATTTGATTTGACTTCTGCATAGTTTTGAGATATATGTATTTTTTTCTTCTTCCTAAATACTTGTTGTGTACTACCTACG
TAGAATATATATATTATTATTTTGAT-------------GTATATTTTGTGGTACGGAGGGAGTATTCATTACTCGAGAA
AAGAGTTCACAAGAAATTTCAAATCGAACAACAACTCAAATTCACATTCACATTCAAACCATTCCTTTATTATTTAAATC
CTCTGACGGCTCCCTCCCGGCAAAAACGGCACGCGACGACTGTCTTCTCAGGCGCCGGCGCGCACCACGGGGGGTCCACG
CGACGCGAGCACCGCCATTTCGCCGCCGCTCCCCGGACG------------CCTGCTCTCGCCGTCTCCATGCCTCTGCC
GCCCCCGGGCATCA---TCCTTCGCGACGCGCGGACGCCGCGGGGGTTCGTCCAGCTCCTCG---------CCTC---CT
CCTCCCCGCTTCCGCCGAGCCCGTCCGCCGCGGCGCAGTGCCATGGGCTGGCCACCAAGCTCGGCCTCGCGGCTTGCAAC
GTCTTCGCGGGCACCGCCCTCCTCGCCTTCTACTGCCGCTGCCGCCGCCCGCGCGACGCCCAGCGACTGTTCGACGAAAT
GCCCGAGAGGACCGGCGTCACCTGGAGCGCGCTCGTCTACGGCCACGCGCGGTCCAGCGCGCCGGGCCTGGCCGTGGAGG
CTTTCGGACGCATGGTGCGTGCCGGCTTCTCCCCCACGGCGGCGGCCGTGTCCAGCGCCCTTGTCGCGTGCGCGAGGATG
GAGGACGCGGGCGTCGGGGCGATGCTCCACGCCGCTGGCCTCAAGTGCGGCAGCATCGTCTGTGGCAGCGTCGTTGTCGG
GACTGCGTTGGTGGACATGTACGCCAAATGCCGTGATGTTTCGGCTGCTCAGCGGGTTCTTGAGGAGATGGAAGAGAAGA
ATGTGGCCACTTTTACGTCTCTTGTCGGCGGGTTCGCCTCAGCCGGAAGACCTCGCGAGGCCATGGTGTTGGTCAGGGAG
ATGGAACAGTCAGGGGTGGCACCAAACATGATGACGTACAGCAGCCTTCTCAGCTCATTGGAGAGCCCCCAGGACCTAGA
CCATGGGAGGCAAGCGCATTGTGCGGTGGTAAAGAAGGGTCTCGAGCACAATCCGTATGTTCTGTCCACTCTTATGACCA
TGTACTCCAAGTGTGGCAGCTTAGATGATTTCAGGGAGGTACAGATGAGTGTTTCGTGTCAGGATCAGGTCACGCTCAAT
TCCATGATCTCGGGGCTCTCCTGTTTGGGAAGAGGCGACGAGGCATTTCAGCAGTTCTTGGAGATGAGACGGCATGGCGC
TGACACAGATATGTTCACCTTTGGCAGCATGCTGAAGGCTATAGGGAGCTCATCCTCACTGCTGGAGGGAAGACAAGTCC
ATGCTCTGATCCTCAAAACTGGGTATGAGTCTGCTGTGAATGTCCAGAACGGTTTGATCTCCATGTACGCCAGGCGCGGT
GAGATAGGGGAAGCCAGGGATGTTTTCACTTCGGTGGAAGCGCCTGATTTGGTCTCCTGGAATTCGCTTCTGACAGGATA
TGCTCAACATGGTTATGGCAAACAGGTGGTTGAGGTGTTTGAACGGATGAGGAGACTGAATGTTCATCCAGACAACACAA
CCTTCTTGTTGGTGCTTACAGCTTGCAGCCACGCCGGTTTGGTGGATACAGGGTTGGAGTACTTCAACTTGATGAAGACA
AACGGGTTTCTCGCAGGGGCGCGGCTAGAGCACTACGCGTGCGTGGTCGATCTTCTTGGACGAGCGGGCCATCTCCAAGA
AGCCGAGGCTTTGATCAACGACATGCCTATTGAACCTGGCGTCTCGGTGTACAGAGCTCTGCTTAGTGCCTGCCAGATCC
ACGGCAACCTTGAGATTGCGATCCGGGTGTCCACGCGCCTGGTCGAGCT--------CTACCCTCACGACTCCTCTGCCC
ATGTTCAGCTGTCAAAGGTCTTTGCCGGTGATGGCCACTGGGGTGATGCTGCCGAGGTCAGGGAGGCCATGGCAGGTAAA
GGGGTAGTGAAGAACCCTGCTTGGAGCTGTGTCGAGGACCGGGTACAGGTTGGATAAGAAGGTTGAGATCCCATAGATTT
GCCGTTGTTAACTGTAGG-----TAATGGTCAGCTATGTTGCAGTGTTCACTGAAGGTAATGCCAGAAATCACTCATAAA
TCCGATGAACCTCTGATGAAGTTT-------------GGAGAGCAGAGATAGTTCCTGGCATCAATTTATAAGAAAACAC
AAATCATATGCCTTCACACGATCCTGTACTTATACATCATTAAT----ATGAATTGCAGCACCGTTGATAAAATTTCCTG
ATATTGCAAGGATTTTGTGCTACTGAAACCAAGACCATTGGAGTGCTGAGTAACCAAAGCCTATGATTAAGACTGTCAGG
ACCCGAATCTGATGCATGAAGAATTCAGGTTATTATGTCAGACCTATAATCGTTTTTAGGGAGATCAGCACCTGTACGTC
AGTTAACTGATACAGGCTAG------------------------------------------------------------
------------------------------------------------ATAAGAAGGTTGAGATCACAGCATCCTGTACT
TATAAATCA-TTACAGCATATGAATTACGGCAATGTTGATAAAAAAAATCCCATGATACCCCAAGAATTCATGCTGCTGA
AAACAAGACTATCGGAGCGCTGACTAACGAAAGGCCAAGATTAAATTCATGAGGACCCCAGGTTTGACACATGAATGTGA
AGAACAGGTCAGTATATCAGCACTTTACTACTGTACTTTTTTTAGGAAA--------------------------AAA-T
CAGCACCTTTACTTGCCATTTGATCATGAAGCAAG--------------ACTTATGTATCATTACGGC--CTATGAATTG
CAGCTTAATTTTCCAGATTCTGTGTGCACG----CACGCACGCAGGCAGCTTGG-----TGCCACCTGAAGCATGGCTGG
GCCGGCCGGGCCTTTCTGCCTTGGGCCAGAACACACGTGCGCCAGGCTCTCTCCGATCGATACCACCGAGGCGAGGAGGA
GGGGAGAG------AGAGCGACCACGGCTTGCCACCACCAGATCGACGGACGAATCACCGTCATTCTCCTCCTCCTCCTC
CGCGCCCTCGCCTCCTGTCGCCACCGGAAGCAAGGCAAGGCAATGC
>chr3D_499
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCTTTGCTTGTCGGCTTGGCAGCCGAGCAATACCATGAGACTTTACAAAAATGATGAGATTG
CTTTTGTCCTTTTATTTACTTAGCAAAAGAATTGTTGGAACAAAGTATTGTTGTGGATAGGCATGGATAAATTATGAATG
CATTTGATTTGATTTCTGCATAGTTTTGAGATATATGTATTTTCTTCTTCTTCCCAAATACTTGT-----ACTACCTACG
ACCA-----------ATTTTTTTTTG-------------ATGTATACTTTGGTACGAAGGGAGTACTCGAG---------
----------AAAAAAGTTCAAATCGAAGAACAATT-AAATTCAAATTCACATTCAAACAATTCCTTTA---TTTAAATC
CTCTGACGGCTCCCTCCCGGCAAAAACGGCACACGACGACGG-CTTCTCAGGCGCCGGCGCGCACCACGGGG-CTCCACG
CGACGCGAGCACCGCCATTTCGCCGCCGCTCGCCGGGCGGCGAACCCGCCACCTGCTCGCGCCGTCTCCATGCCTCTGCT
CGCCCCCGGCATCA---TCCTTCGCGACGCGCGGACGCCGCGGGGGTTCGTCCAGCTCCTCGCCT------CCTC---CT
CCTCCCCGCTTCCGCCAAGCCCGTCCGCCGCGGCGCAGTGCCATGGGCTGGCCACCAAGCTCGGCCTCGCGGCCAGCAAC
GTCTTCGCGGGCACCGCCCTCCTCGCCTTCTACTGCCGCTGCCGCCGCCCGCGCGACGCCCGGCGGCTGTTCGACGAAAT
GCCCGAGAGGAGCGGCGTCACCTGGAGCGCGCTCGTCTACGGCCACGCGCGGTCCAGCGCGCCCGGCCTCGCCGTGGAGG
CGTTCGGACGCATGGTGCGCGCCGGCTTCTCCCCCACGGCGGCGGCCGTGTCCAGCGCCCTTGTCGCGTGCTCGAGGATG
GAGGACGCCCGCGTAGGGGCGATGCTCCATGCCGCTGGCCTCAAGTGCGGCGGCAGCGTCTGTGGCAGCGTCGTCGTCGG
GACTGCGTTGGTGGACATGTACGCCAAATGCCGTGATGTTTCGGCTGCTCAGCGGGTTCTTGAGGAGATGGAAGAGAAGA
ACGTGGCCACTTTTACGGCTCTTGTGGGCGGGTTCGCCTCAGCCGGAAGACCTCGCGAGGCCATGGTGCTGGTCAGGGAG
ATGGAACAGTCAGGGGTGGCACCAAATATGATGACATACAGCAGCCTTCTCAGCTCATTTGCGGGTCCTGAAGACCTCAA
TCATGGGAGGCAAGCGCATTGTGCGGTGCTAAAGAAGGGTCTCGAGCACAATCCCTATGTTCTGTCCACTCTTATGACCA
TGTACTCCAAGTGTGGCATCTTAGATGATTTCAGGAAGGTGCAGATGGCTGTTTCATGCCAGGATCAGGTGTCGCTCAAT
TCCGTGATCTCGGGGCTCTCCTGTTTGGGAAGAGGCGACGAGGCGTTTGAACAGTTCTTGGAGATGAGACGGCATGGCGC
TGACACAGATATGTTCACCTTTGGCAGCATGCTGAAGGCTATAGGGAGCTCATCCTCGCTGCTGGAGGGAAGACAAGTCC
ATGCTCTGATCCTCAAAACTGGGTATGAGTCTGATGTGAATGTCCAGAACGGTTTGATCTCCATGTACGCCAGGCGCGGC
GAGATAGGGGAGTCCAGGGATGTTTTCGCTTCGGTGGAAGCGCCTGACTTGGTCTCCTGGAATTCGCTTCTGACAGGCTA
TGCTCAACATGGTTATGGCAAAGAGGTGGTTGAGGTGTTTGAACAGATGAGGAGACTGAATGTTCAGCCAGACAACACAA
CCTTCTTGTTGGTGCTTACAGCTTGCAGCCACGCCGGTTTGGTGGATACAGGGTTGGAGTACTTCAACTTGATGAAAACA
AACGGGTTTCTCGCAGGGGCGCGGCTAGAGCACTACGCGTGCGTGGTCGATCTTCTCGGTCGAGCAGGCCATCTCCAAGA
AGCCGAGGCTTTGATCAACGACATGCCTATTGAACCTGGCGTCTCGGTGTACAGAGCTCTGCTTAGTGCCTGCCAGATCC
ACGGCAACCTTGAGATCGCGATCCGGGTGACCACACGCCTGATCGAGCT--------CTACCCGCACGACTCCTCTGCCC
ATGTTCAGCTGTCAAAGGCCTTTGCCGGTGATGGCCACTGGGGTGATGCTGCCGAGGTCAGGGAGGCCATGGCAGGTAAA
GGGATAGTGAAGAACCCTGCTTGGAGCTGTGTCGAGGACCGGGTACAGGTTGGATAAGAAGGTTGAGATCCCATAAATTT
GCCGTTGTTAACTGGGAGTGACTTAATGGTCAGCTTTATTGTAGTGTTAACTGAAGGTAATGCCAGAAACCACTCATAAA
TCCAATGAACCTCTGAAATCTGTCTGATAA--ATTTCGGAGAGCAGAGATGGCTCATGGCATCAATGGATAAGAAAGCAC
AGATCATGTGCCATCACAGTATCCTGTACTTATACGGCATTAAAGCACATGAATTACAGCACATTTGATAAAATTTCCTG
ATATTGCAAGGATTTTGCGCTACTGAAACCAAGACCACTCGAGTGCTGGGTAACCAAAGCCTATGGTTTAAACTGTCAGG
ACCCGAATCTGATGCATGAAGAAAACAGGTTGTTATGTCAGACCTATAATCGTTTTTAGGGATATCAACACCTGTACCTC
AGTTAACTGATACAGGCTAGTACTCCCTCCGTTCCGAATTACTTGTCGCAGGTATGGATGTATCTAGATGTATTTTAGTT
CTAGATACATCCATTTCTGCGACGAGTAATTTGGAACGGAGGGAGTAGATAAGAAGGCAAAGACCTTTG-----------
--------------------------ACAGCAATGTTGAT-AAAAAT---CCCTGATACTCCAAGAGTTCATGCTGCTGG
AAACAAGA-TATCGGACCGCCGACTGACGAAAAGCTAAGATTAAATTCATGAGGACCCCAGGTTTGACACATGAAGATGA
AGAGCAGGTCAGTGTATCAGCACTTTACTACTGTACTTTTTAGGAAAAAATCAGCGCCTTTACTTGTCTTTAGGGAAA-T
CAGCATCTTTACTTGCCATTTGGTCATGAAGCAAGCAGTATTTCCCTGCACTTATGCATCATTACGGCTTCTATGAATTG
CAGCTTAATTCTCCAAATTCTGTGTGCACGCGCGCACGCAGGCAGGCAGCTTGG-----TGCCACCTGAAGCATGGCTGG
GCCGGCCGGGCCTTTCTGCCTTGGGCCAGAACACACGTGCGCAGGCT--CCCCTC--CGATACCACCGAGGCGAGGAGGA
GGAG-GAG------AGAGCGACCACGGCTTCCCACCACCAGATCGACCGACGAATCCTCT---------TCCTCCTCCTC
CGCGCCCTCGCCTCCTGTCGCCACCGCAAGCAAGGCAAGGCAATGC
>chrUn_705
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GTACTACCTATG
TACC-----------AATTTTTTTTATTTTGATATATATATATATTTTTTGGTACGGAGGGAGCATTCAGTACTCCAGAA
AAATGTT--CAAGGAATTTCAAATCGAAGACCAATT-AAATTCAAATTCACATTCAAACCATTCCATTATCATTTAAAT-
CTCTGACGGCTCCCTCCCGGCAAAAACGGCACACGACGACGG-CTTCTCAGGCGCCGGCGCGCACCACGGGGGCTCCACG
CGACGCGAGCACCGCCATTTCGCCGCCGCTCGCCGGACGGCGAACCCGCCACCTGCTCGCGCCGTCTCCATGCCTCTGCT
GGCCCCCGG---CATCGTCCTTCGCGACGCGCGGACGCCGCGGGGGTTCGTCCAGCTCCTCGCCTCCTCCTCCTC---CT
CCTCCCCGCTTCCGCCGAGCCCGTCCGCCGCGGCGCAGTGCCATGGGCTGGCCACCAAGCTCGGCCTCGCGGCCGGCAAC
GTCTTCGCGGGGACCGCCCTCCTCGCCTTCTACTGCCGCTGCGGCCGCCCGAGCGACGCCCGGCGGCTGTTCGACGAAAT
GCCCGAGAGGAGCGGCGTCACCTGGAGCGTGCTCGTCTACGGCCACGCGCGGTCCAGCGCGCCCGGCCTCGCCGTGGAGG
CGTTCGGGCGCATGGTGCGCGCCGGCTTCTCCCCCACGCCGGCGGCCGTGTCCAGCGCCCTTGCCGCGTGCGCGAGGATG
GAGGACGCCCGCGTCGGGGCGATGATCCACGCCGCTGGCCTCAAGTGCAGTGGCGGCATCTGTGGAAGCGTCGTCGTCGG
GACTGCGTTGGTGGACATGTACGCCAAATGCCGTGATGTTTCGGCTGCTCAGCGGGTTCTTGAGGAGATGGAAGAGAAGA
ATGTGGCCACTTTTACGGCTCTTGTGGGCGGGTTTGCCTCAGCCAGAAGACCTGGTGAGGCCATGATGTTTGTCAGGGAG
ATGGAACAGTCAGGGGTGGCACCAAACATGATGACATACAGCAGCCTTCTCAGCTCATTTGCGAGTCCTGAAGACCTCAA
TCATGGGAGGCAAGCGCATTGTGCGGTGCTAAAGAAGGGTCTCGAGCACAATCCGTATGTTCTGTCCACTCTTATGACCA
TGTACTCCAAGTGCGGCATCTTAGATGATTTCAGGAAGGTGCAGATGAGTGTTTCCTGTCAGGATCAGGTCTCGCTCAAC
TCCGTGATCTCGGGGCTCTCCTGTTTGGGAAGAGGTGACGAGGCATTTCAGCAGTTCTTGGAGATGAGACGGCATGGCGC
TGACACAGATATGTTCACCTTTGGCAGCATGCTGAAGGCTATAGGGAGCTCATCCTCACTGCTAGAGGGAAGACAAGTCC
ATGCTCTCATCCTCAAAACTGGGTATGAGTCTGATGTGAATGTCCAGAATGGATTGATTTCCATGTACGTCAGGCGCGGC
GAGATAGGGGAAGCCAGGGATGTTTTCACTTCGGTGGAAGCGCCTGACTTGGTCTCCTGGAATTCGCTTCTGACAGGATA
TGCTCAGCATGGTTATGGCAATGAGGTGGTTGAGGTGTTTGAACAGATGAGGAGACTGAATGTTCAGCCAGACAACACAA
CCTTCTTGTTGGTGCTTACAGCTTGCAGCCACGCCGGTTTGGTGGATACAGGGTTGGAGTACTTCAACTTGATGAAAACA
AACGGGTTTCTCGCAGGGGCACGGCTAGAGCACTACGCGTGCGTGGTCGATCTTCTTGGTCGAGCAGGCCATCTCCAAGA
AGCAGAGGCTTTGATCAACGACATGCCTACTGAACCTGGCGTCTCGGTGTACAGAGCTCTGCTTAGTGCCTGCCAGATCC
ACGGCAACCTTGAGATTGCGGTCCAGGTGTCCACGCGCCTGATCGAGCT--------CTACCCTCACGACTCCTCTGCCC
ATGTTCAGCTGTCAAAGGCCTTTGCCGGTGATGGCCACTGGGGTGATGCTGCCGAGATCAGGGAGGCCATGGCAGGTAAA
GGGATAGTGAAGAACCCTGCTTGGAGCTGTGTCGAGGACCAGGTACAGGTTGGATAAGAAGGTTGAGATCCCTTAAATTC
GCCGTTGTTAACTGGGAGTGACTTAATGGTCAGCTTTGTTGCAGTGTTAACTGAAGGTAATGCCAGAAACCACTCATAAA
TCCGACGAACCTCTGAAATCTGTCTCTGATATATTTCGGAGAGCAGAGATGGCTCATGGCATCAATGGATAAGAAAGCAC
AGGTCATGTGCCATCACAGTATCCTGTACTTATACATCATTAAAGCACATGAATTACAGCACATTTGATAAAATTTCCTG
ATATTGCAAGGATGTTCTGCTACTGAAACCAAGACCACTCGAGTGCTGGGTAACCAAAGCCTAAGATTAAAACTGTCAGG
ATCCAGATCTGATACGTGAAGAAGACAGGTCATTATGTCAGACCGTTACTTGTTTTTAGGGAGATCAACACCTGTACCTC
AGTTAACTGATGCAGGCTAG------------------------------------------------------------
------------------------------------------------ATAAGAAGGCTGAGATCACAGCATCCTGTACT
TATACATCATTTACAGCATATGAATTGCAGCAATGTTGAT-AAAAAAATCCCCTGATACTCCAAGAATTCATGCTGCTGG
AAACAAGTCTATCGGACCGCCGACTGACGAAAGGCTGAGATTAAACTCACGAGGACCCCAGGTTTGACA-----------
---ACAGGTCAGTTTATCAGCACTTTACTACTGTACTTTTTAGGAAAAAATCAGCACCTTTACTTGTCTTTAGGGAAAAT
CAGCACCTTTACTTGCCATTCAACCATGAGGCATGCAC---------------------CATTACGGC--CTATGAATTG
CAGCTTCATTTTCCAAATTCTGTGTGCACGCGCGCACGCAGGCAGGCAGCTTTGGTGCCTGCCGCCTGAAGCATGGCTGG
GCCGGCCGGGCCTTTCTGCCTTGGGCCAGAACACACGTGCGCCAGGCTCCCCCTC--CGATACCACCGAGGCGAGGAGGA
GGAG-GAGGAGGAGAGAGCGACCACGGCTTCCCACCACCAGATCGACCGACGAATCCTCT---------TCCTCCTCCTC
CGCGCCCTCGCCTCCTGTCGCCACCGCAAGCAAGGCAAGGCAA---
>chr3D_985
TGCTCTGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CGTCCCAATGCCTCTGCT
GGCCCCCGG---CA---TCCTTCGCCACGCGCGGACGCGGCGGGGGTTCGTGTAGCTCCTCG---------CCTCCACCT
CCTCCTCGGTTACGCCGAGCCCATCCTCCGCGGGGTAGTTCCATGGGCTGGCCACCAAGCTCGGCCTCGCGGCCAGCAAC
GTCTTCGCCGGCGCCGCCCTCCCTGCCTTCTATG------GCCGCCGCCTTCGCGACGCCC-GCGGCTGTTCGACGAAAT
GCCTGAGAGGAGCGGCGTCACCTGGAGCGTGCTCGTCTAGGGCCACGCGTGGTCCGGCGCGGCCGGCCTCGCCCTGGGAG
CGTTCAGACCATCTCTAAGA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AGGGGCATGGCCAGAGCACTACGCGTGAGTGGTCTATCTTCTCGGTCGAGCAGGCCATCTCCAAGA
AGCCGAGTCTTTGATCAGTGGCATGCCTATAGAACCTGGCGTCTCGGTGTACAGAGCTCTGCTTAGTAGCTGCCATATCC
GTGGCAACCTTGGGATCGTGATCAGGATGTCCACACACCTTATCAAGCTCTAGTGCTCTACCCTCACGATTCCTCTGCCC
ACGTTCAGCTATCGAAGGTCTTTGCCAGTGATGGTCACTGGGGTAATGCTGCTGAGATCAGGGAGGC-------------
--------------------------------------------------------------------------------
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----------------------------------------------
>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS---------S----------S-----S-------S--------------S------------
S-----------SS-------S---------------S-S---------S------S-----------S-S--------S
------------S------------------------------S----------S----------SSS------------
--S-SSSSSSSSSSS---S----SSS-------------S--------S--------------------S-----S----
--SS---SS-------------------S-----S-S-------S-------------------------S---------
--------------------------------S-------S-S------------------------------S------
-------------------------------S--------------------------S--------------------S
-S----S-------------------------------------------------------------------------
-------------------------------------------------------------------------SS-----
-------------------------------------------------------------S---S--------------
-----------S---------------------------------------------------S-----S----------
-S-----------------S------------------------------------------------------------
--------SS-----------------------------------------S---S------------------S-----
--------------------------------------------------------------------------------
-----------------S-------S------------------------------------------------------
-----------------------------------S-----------------------S-S---S--SS-S-----SS-
S---------------------------S---------------------------------------------------
------------------S----------------S----S--------------S---------------S--------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S---------------------------------------------S
-----------------------------------------------S--------------------------------
----------------------S---------------------S---------------------S-------------
----------------------------------------------------------------------------S---
-----------------------------------------------------------S-----S--------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
---S-----------------------------------------------------------------------S----
--------------SSS------------------S------------S--------------------S----------
----------------SSSSSS-S--------------------------S-S--S----------SS--------S---
-S-----S----S-----SS-----------------------S-----------S------SS----------------
-------------------------------------S-S--------S---------------------S---------
-----------------------SS------------------------------------------S---------S--
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
----S-----------------------S-----------S-----------S------S-------------------S
----------------S---S----S---------S---------------------------------------SS---
-------------S---------------------------SSSSS----------------------------------
--------------------------------------------------------S-----------------------
---------------S------------------------S---------------------------------------
-------------------------------------------------S-S-SSSS-----------------------
--S-S-------------------------S----------------S--------SS-SSSSSSSSSS-----------
--------------------------S-------------------
>forward_369
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TCTGCCGGTTGGATGGTAAC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_1749
--------------------------------------------------------------------------------
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--------------------------------------------------------------------CCAGGACCTAGA
CCATGGGA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------
>forward_407
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TCCTCCAATACAC
CCGGACT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>reverse_2397
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------GACA
AACGGGTTTCTCGCAG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_463
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------AGTGACGGTGGACATATGCC-----------------
--------------------------------------------------------------------------------
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----------------------------------------------
>reverse_2466
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GGGCCATCTCCAAGA
AGCC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_2460
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GCGTGGTCGATCTTCTTGGA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_3810
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TCTCCGATCGATACCACCGA-----------
--------------------------------------------------------------------------------
----------------------------------------------
