>input_sequence_44550
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-ATGCCTCTGCTCGCCCCCGGCATCATCCTTCGCGACGCGCGGACGCCGCGGGGGTTCGTCCAGCTCCTCGCCT------
CCTC---CTCCTCCCCGCTTCCGCCAAGCCCGTCCGCCGCGGCGCAGTGCCATGGGCTGGCCACCAAGCTCGGCCTCGCG
GCCAGCAACGTCTTCGCGGGCACCGCCCTCCTCGCCTTCTACTGCCGCTGCCGCCGCCCGCGCGACGCCCGGCGGCTGTT
CGACGAAATGCCCGAGAGGAGCGGCGTCACCTGGAGCGCGCTCGTCTACGGCCACGCGCGGTCCAGCGCGCCCGGCCTCG
CCGTGGAGGCGTTCGGACGCATGGTGCGCGCCGGCTTCTCCCCCACGGCGGCGGCCGTGTCCAGCGCCCTTGTCGCGTGC
TCGAGGATGGAGGACGCCCGCGTAGGGGCGATGCTCCATGCCGCTGGCCTCAAGTGCGGCGGCAGCGTCTGTGGCAGCGT
CGTCGTCGGGACTGCGTTGGTGGACATGTACGCCAAATGCCGTGATGTTTCGGCTGCTCAGCGGGTTCTTGAGGAGATGG
AAGAGAAGAACGTGGCCACTTTTACGGCTCTTGTGGGCGGGTTCGCCTCAGCCGGAAGACCTCGCGAGGCCATGGTGCTG
GTCAGGGAGATGGAACAGTCAGGGGTGGCACCAAATATGATGACATACAGCAGCCTTCTCAGCTCATTTGCGGGTCCTGA
AGACCTCAATCATGGGAGGCAAGCGCATTGTGCGGTGCTAAAGAAGGGTCTCGAGCACAATCCCTATGTTCTGTCCACTC
TTATGACCATGTACTCCAAGTGTGGCATCTTAGATGATTTCAGGAAGGTGCAGATGGCTGTTTCATGCCAGGATCAGGTG
TCGCTCAATTCCGTGATCTCGGGGCTCTCCTGTTTGGGAAGAGGCGACGAGGCGTTTGAACAGTTCTTGGAGATGAGACG
GCATGGCGCTGACACAGATATGTTCACCTTTGGCAGCATGCTGAAGGCTATAGGGAGCTCATCCTCGCTGCTGGAGGGAA
GACAAGTCCATGCTCTGATCCTCAAAACTGGGTATGAGTCTGATGTGAATGTCCAGAACGGTTTGATCTCCATGTACGCC
AGGCGCGGCGAGATAGGGGAGTCCAGGGATGTTTTCGCTTCGGTGGAAGCGCCTGACTTGGTCTCCTGGAATTCGCTTCT
GACAGGCTATGCTCAACATGGTTATGGCAAAGAGGTGGTTGAGGTGTTTGAACAGATGAGGAGACTGAATGTTCAGCCAG
ACAACACAACCTTCTTGTTGGTGCTTACAGCTTGCAGCCACGCCGGTTTGGTGGATACAGGGTTGGAGTACTTCAACTTG
ATGAAAACAAACGGGTTTCTCGCAGGGGCGCGGCTAGAGCACTACGCGTGCGTGGTCGATCTTCTCGGTCGAGCAGGCCA
TCTCCAAGAAGCCGAGGCTTTGATCAACGACATGCCTATTGAACCTGGCGTCTCGGTGTACAGAGCTCTGCTTAGTGCCT
GCCAGATCCACGGCAACCTTGAGATCGCGATCCGGGTGACCACACGCCTGATCGAGCT--------CTACCCGCACGACT
CCTCTGCCCATGTTCAGCTGTCAAAGGCCTTTGCCGGTGATGGCCACTGGGGTGATGCTGCCGAGGTCAGGGAGGCCATG
GCAGGTAAAGGGATAGTGAAGAACCCTGCTTGGAGCTGTGTCGAGGACCGGGTACAGGTTGGATAA--------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>chr3D_1_TraesCS3D01G529300
GCCGGCCAAGGGGGCACCAGATCTGGGCGAAGAACCCACCAGAGCATCTGCCAAGGCCGCTGGCTTCCCCCAGCGTGATC
GTCGCGCCTGTTGGATAAGTTACGACCAGAGCCTGCCGCTGCATCTTGCCCAGCAGTCCAGGAACCCGATCGCCACACCA
CCATGGATATGCTCCAAAGTTGCGTCGTCCCCACGTCCTAGCGTGAGCCGAGGAAAACGCCCCACCGCCGTCGTCACTGG
AGCCTGCGCCTCTGGCGGCGGCGAGACGAGGGGAGGGAGTGGAGGAAGACTAAGCGCGCAAGGGTTTCGCCCCCTGAGTC
GCTAGGGAGGGCGACGCGGGGGTTGTGCGTGCGGTTAGGTGTCTTAAGATTGCTAGACATATTCTGAGAGAAAGCGTGGC
AATGTTGCTCGTCAAAAACTGTTTACGTTGCTGACCTCGTAACCGGAGGAATAATGTAGGAGGTGAAAGACTGGCCTAAC
ATTTAGAGGGAGGCGGTGTCCTTTGAGGCGGATTGGCTGGCGATCTTTGCTTGTCGGCTTGGCAGCCGAGCAATACCATG
AGACTTTACAAAAATGATGAGATTGCTTTTGTCCTTTTATTTACTTAGCAAAAGAATTGTTGGAACAAAGTATTGTTGTG
GATAGGCATGGATAAATTATGAATGCATTTGATTTGATTTCTGCATAGTTTTGAGATATATGTATTTTCTTCTTCTTCCC
AAATACTTGT-----ACTACCTACGACCA-----------ATTTTTTTTTGATGTATACTTTGGTACGAAGGGAGTACTC
GAG-------------------AAAAAAGTTCAAATCGAAGAACAATT-AAATTCAAATTCACATTCAAACAATTCCTTT
A---TTTAAATCCTCTGACGGCTCCCTCCCGGCAAAAACGGCACACGACGACGG-CTTCTCAGGCGCCGGCGCGCACCAC
GGGG-CTCCACGCGACGCGAGCACCGCCATTTCGCCGCCGCTCGCCGGGCGGCGAACCCGCCACCTGCTCGCGCCGTCTC
CATGCCTCTGCTCGCCCCCGGCATCATCCTTCGCGACGCGCGGACGCCGCGGGGGTTCGTCCAGCTCCTCGCCT------
CCTC---CTCCTCCCCGCTTCCGCCAAGCCCGTCCGCCGCGGCGCAGTGCCATGGGCTGGCCACCAAGCTCGGCCTCGCG
GCCAGCAACGTCTTCGCGGGCACCGCCCTCCTCGCCTTCTACTGCCGCTGCCGCCGCCCGCGCGACGCCCGGCGGCTGTT
CGACGAAATGCCCGAGAGGAGCGGCGTCACCTGGAGCGCGCTCGTCTACGGCCACGCGCGGTCCAGCGCGCCCGGCCTCG
CCGTGGAGGCGTTCGGACGCATGGTGCGCGCCGGCTTCTCCCCCACGGCGGCGGCCGTGTCCAGCGCCCTTGTCGCGTGC
TCGAGGATGGAGGACGCCCGCGTAGGGGCGATGCTCCATGCCGCTGGCCTCAAGTGCGGCGGCAGCGTCTGTGGCAGCGT
CGTCGTCGGGACTGCGTTGGTGGACATGTACGCCAAATGCCGTGATGTTTCGGCTGCTCAGCGGGTTCTTGAGGAGATGG
AAGAGAAGAACGTGGCCACTTTTACGGCTCTTGTGGGCGGGTTCGCCTCAGCCGGAAGACCTCGCGAGGCCATGGTGCTG
GTCAGGGAGATGGAACAGTCAGGGGTGGCACCAAATATGATGACATACAGCAGCCTTCTCAGCTCATTTGCGGGTCCTGA
AGACCTCAATCATGGGAGGCAAGCGCATTGTGCGGTGCTAAAGAAGGGTCTCGAGCACAATCCCTATGTTCTGTCCACTC
TTATGACCATGTACTCCAAGTGTGGCATCTTAGATGATTTCAGGAAGGTGCAGATGGCTGTTTCATGCCAGGATCAGGTG
TCGCTCAATTCCGTGATCTCGGGGCTCTCCTGTTTGGGAAGAGGCGACGAGGCGTTTGAACAGTTCTTGGAGATGAGACG
GCATGGCGCTGACACAGATATGTTCACCTTTGGCAGCATGCTGAAGGCTATAGGGAGCTCATCCTCGCTGCTGGAGGGAA
GACAAGTCCATGCTCTGATCCTCAAAACTGGGTATGAGTCTGATGTGAATGTCCAGAACGGTTTGATCTCCATGTACGCC
AGGCGCGGCGAGATAGGGGAGTCCAGGGATGTTTTCGCTTCGGTGGAAGCGCCTGACTTGGTCTCCTGGAATTCGCTTCT
GACAGGCTATGCTCAACATGGTTATGGCAAAGAGGTGGTTGAGGTGTTTGAACAGATGAGGAGACTGAATGTTCAGCCAG
ACAACACAACCTTCTTGTTGGTGCTTACAGCTTGCAGCCACGCCGGTTTGGTGGATACAGGGTTGGAGTACTTCAACTTG
ATGAAAACAAACGGGTTTCTCGCAGGGGCGCGGCTAGAGCACTACGCGTGCGTGGTCGATCTTCTCGGTCGAGCAGGCCA
TCTCCAAGAAGCCGAGGCTTTGATCAACGACATGCCTATTGAACCTGGCGTCTCGGTGTACAGAGCTCTGCTTAGTGCCT
GCCAGATCCACGGCAACCTTGAGATCGCGATCCGGGTGACCACACGCCTGATCGAGCT--------CTACCCGCACGACT
CCTCTGCCCATGTTCAGCTGTCAAAGGCCTTTGCCGGTGATGGCCACTGGGGTGATGCTGCCGAGGTCAGGGAGGCCATG
GCAGGTAAAGGGATAGTGAAGAACCCTGCTTGGAGCTGTGTCGAGGACCGGGTACAGGTTGGATAAGAAGGTTGAGATCC
CATAAATTTGCCGTTGTTAACTGGGAGTGACTTAATGGTCAGCTTTATTGTAGTGTTAACTGAAGGTAATGCCAGAAACC
ACTCATAAATCCAATGAACCTCTGAAATCTGTCTGATAA--ATTTCGGAGAGCAGAGATGGCTCATGGCATCAATGGATA
AGAAAGCACAGATCATGTGCCATCACAGTATCCTGTACTTATACGGCATTAAAGCACATGAATTACAGCACATTTGATAA
AATTTCCTGATATTGCAAGGATTTTGCGCTACTGAAACCAAGACCACTCGAGTGCTGGGTAACCAAAGCCTATGGTTTAA
ACTGTCAGGACCCGAATCTGATGCATGAAGAAAACAGGTTGTTATGTCAGACCTATAATCGTTTTTAGGGATATCAACAC
CTGTACCTCAGTTAACTGATACAGGCTAGTACTCCCTCCGTTCCGAATTACTTGTCGCAGGTATGGATGTATCTAGATGT
ATTTTAGTTCTAGATACATCCATTTCTGCGACGAGTAATTTGGAACGGAGGGAGTAGATAAGAAGGCAAAGACCTTTG--
-----------------------------------ACAGCAATGTTGAT-AAAAAT---CCCTGATACTCCAAGAGTTCA
TGCTGCTGGAAACAAGA-TATCGGACCGCCGACTGACGAAAAGCTAAGATTAAATTCATGAGGACCCCAGGTTTGACACA
TGAAGATGAAGAGCAGGTCAGTGTATCAGCACTTTACTACTGTACTTTTTAGGAAAAAATCAGCGCCTTTACTTGTCTTT
AGGG-AAATCAGCATCTTTACTTGCCATTTGGTCATGAAGCAAGCAGTATTTCCCTGCACTTATGCATCATTACGGCTTC
TATGAATTGCAGCTTAATTCTCCAAATTCTGTGTGCACGCGCGCACGCAGGCAGGCAGCTTGG---------TGCCACCT
GAAGCATGGCTGGGCCGGCCGGGCCTTTCTGCCTTGGGCCAGAACACACGTGCGCAGGCT--CCCCTC--CGATACCACC
GAGG
>chr3A_524
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TCTTTGCTTCTCGGCTTGGCGGCCGAACAATACCGTG
AGACTTTACAAAT---ATGAGATTGTTTTTGTCCTTTAGTTTACTTTGCAAAAGAATTGTTGAAGCAAAG-ATTATTGTG
GGTAGGCATGGATGAGTTATGAATCCATTTGATTTGACTTCTGCATAGTTTTGAGATATATGTATTTTTTTCTTCTTCCT
AAATACTTGTTGTGTACTACCTACGTAGAATATATATATTATTATTTTGATGTATATTTTGTGGTACGGAGGGAGTATTC
ATTACTCGAGAAAAGAGTTCACAAGAAATTTCAAATCGAACAACAACTCAAATTCACATTCACATTCAAACCATTCCTTT
ATTATTTAAATCCTCTGACGGCTCCCTCCCGGCAAAAACGGCACGCGACGACTGTCTTCTCAGGCGCCGGCGCGCACCAC
GGGGGGTCCACGCGACGCGAGCACCGCCATTTCGCCGCCGCTCCCCGGACG------------CCTGCTCTCGCCGTCTC
CATGCCTCTGCCGCCCCCGGGCATCATCCTTCGCGACGCGCGGACGCCGCGGGGGTTCGTCCAGCTCCTCG---------
CCTC---CTCCTCCCCGCTTCCGCCGAGCCCGTCCGCCGCGGCGCAGTGCCATGGGCTGGCCACCAAGCTCGGCCTCGCG
GCTTGCAACGTCTTCGCGGGCACCGCCCTCCTCGCCTTCTACTGCCGCTGCCGCCGCCCGCGCGACGCCCAGCGACTGTT
CGACGAAATGCCCGAGAGGACCGGCGTCACCTGGAGCGCGCTCGTCTACGGCCACGCGCGGTCCAGCGCGCCGGGCCTGG
CCGTGGAGGCTTTCGGACGCATGGTGCGTGCCGGCTTCTCCCCCACGGCGGCGGCCGTGTCCAGCGCCCTTGTCGCGTGC
GCGAGGATGGAGGACGCGGGCGTCGGGGCGATGCTCCACGCCGCTGGCCTCAAGTGCGGCAGCATCGTCTGTGGCAGCGT
CGTTGTCGGGACTGCGTTGGTGGACATGTACGCCAAATGCCGTGATGTTTCGGCTGCTCAGCGGGTTCTTGAGGAGATGG
AAGAGAAGAATGTGGCCACTTTTACGTCTCTTGTCGGCGGGTTCGCCTCAGCCGGAAGACCTCGCGAGGCCATGGTGTTG
GTCAGGGAGATGGAACAGTCAGGGGTGGCACCAAACATGATGACGTACAGCAGCCTTCTCAGCTCATTGGAGAGCCCCCA
GGACCTAGACCATGGGAGGCAAGCGCATTGTGCGGTGGTAAAGAAGGGTCTCGAGCACAATCCGTATGTTCTGTCCACTC
TTATGACCATGTACTCCAAGTGTGGCAGCTTAGATGATTTCAGGGAGGTACAGATGAGTGTTTCGTGTCAGGATCAGGTC
ACGCTCAATTCCATGATCTCGGGGCTCTCCTGTTTGGGAAGAGGCGACGAGGCATTTCAGCAGTTCTTGGAGATGAGACG
GCATGGCGCTGACACAGATATGTTCACCTTTGGCAGCATGCTGAAGGCTATAGGGAGCTCATCCTCACTGCTGGAGGGAA
GACAAGTCCATGCTCTGATCCTCAAAACTGGGTATGAGTCTGCTGTGAATGTCCAGAACGGTTTGATCTCCATGTACGCC
AGGCGCGGTGAGATAGGGGAAGCCAGGGATGTTTTCACTTCGGTGGAAGCGCCTGATTTGGTCTCCTGGAATTCGCTTCT
GACAGGATATGCTCAACATGGTTATGGCAAACAGGTGGTTGAGGTGTTTGAACGGATGAGGAGACTGAATGTTCATCCAG
ACAACACAACCTTCTTGTTGGTGCTTACAGCTTGCAGCCACGCCGGTTTGGTGGATACAGGGTTGGAGTACTTCAACTTG
ATGAAGACAAACGGGTTTCTCGCAGGGGCGCGGCTAGAGCACTACGCGTGCGTGGTCGATCTTCTTGGACGAGCGGGCCA
TCTCCAAGAAGCCGAGGCTTTGATCAACGACATGCCTATTGAACCTGGCGTCTCGGTGTACAGAGCTCTGCTTAGTGCCT
GCCAGATCCACGGCAACCTTGAGATTGCGATCCGGGTGTCCACGCGCCTGGTCGAGCT--------CTACCCTCACGACT
CCTCTGCCCATGTTCAGCTGTCAAAGGTCTTTGCCGGTGATGGCCACTGGGGTGATGCTGCCGAGGTCAGGGAGGCCATG
GCAGGTAAAGGGGTAGTGAAGAACCCTGCTTGGAGCTGTGTCGAGGACCGGGTACAGGTTGGATAAGAAGGTTGAGATCC
CATAGATTTGCCGTTGTTAACTGTAGG-----TAATGGTCAGCTATGTTGCAGTGTTCACTGAAGGTAATGCCAGAAATC
ACTCATAAATCCGATGAACCTCTGATGAAGTTT-------------GGAGAGCAGAGATAGTTCCTGGCATCAATTTATA
AGAAAACACAAATCATATGCCTTCACACGATCCTGTACTTATACATCATTAAT----ATGAATTGCAGCACCGTTGATAA
AATTTCCTGATATTGCAAGGATTTTGTGCTACTGAAACCAAGACCATTGGAGTGCTGAGTAACCAAAGCCTATGATTAAG
ACTGTCAGGACCCGAATCTGATGCATGAAGAATTCAGGTTATTATGTCAGACCTATAATCGTTTTTAGGGAGATCAGCAC
CTGTACGTCAGTTAACTGATACAGGCTAG---------------------------------------------------
---------------------------------------------------------ATAAGAAGGTTGAGATCACAGCA
TCCTGTACTTATAAATCA-TTACAGCATATGAATTACGGCAATGTTGATAAAAAAAATCCCATGATACCCCAAGAATTCA
TGCTGCTGAAAACAAGACTATCGGAGCGCTGACTAACGAAAGGCCAAGATTAAATTCATGAGGACCCCAGGTTTGACACA
TGAATGTGAAGAACAGGTCAGTATATCAGCACTTTACTACTGTACTTTTTTTAGGAA-----------------------
----AAAATCAGCACCTTTACTTGCCATTTGATCATGAAGCAAG--------------ACTTATGTATCATTACGGC--C
TATGAATTGCAGCTTAATTTTCCAGATTCTGTGTGCACG----CACGCACGCAGGCAGCTTGG---------TGCCACCT
GAAGCATGGCTGGGCCGGCCGGGCCTTTCTGCCTTGGGCCAGAACACACGTGCGCCAGGCTCTCTCCGATCGATACCACC
GAGG
>chrUn_792
--------------------------------------------------------------------------------
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--------------------------AATTTCAAATCGAAGACCAATT-AAATTCAAATTCACATTCAAACCATTCCATT
ATCATTTAAAT-CTCTGACGGCTCCCTCCCGGCAAAAACGGCACACGACGACGG-CTTCTCAGGCGCCGGCGCGCACCAC
GGGGGCTCCACGCGACGCGAGCACCGCCATTTCGCCGCCGCTCGCCGGACGGCGAACCCGCCACCTGCTCGCGCCGTCTC
CATGCCTCTGCTGGCCCCCGGCATCGTCCTTCGCGACGCGCGGACGCCGCGGGGGTTCGTCCAGCTCCTCGCCTCCTCCT
CCTC---CTCCTCCCCGCTTCCGCCGAGCCCGTCCGCCGCGGCGCAGTGCCATGGGCTGGCCACCAAGCTCGGCCTCGCG
GCCGGCAACGTCTTCGCGGGGACCGCCCTCCTCGCCTTCTACTGCCGCTGCGGCCGCCCGAGCGACGCCCGGCGGCTGTT
CGACGAAATGCCCGAGAGGAGCGGCGTCACCTGGAGCGTGCTCGTCTACGGCCACGCGCGGTCCAGCGCGCCCGGCCTCG
CCGTGGAGGCGTTCGGGCGCATGGTGCGCGCCGGCTTCTCCCCCACGCCGGCGGCCGTGTCCAGCGCCCTTGCCGCGTGC
GCGAGGATGGAGGACGCCCGCGTCGGGGCGATGATCCACGCCGCTGGCCTCAAGTGCAGTGGCGGCATCTGTGGAAGCGT
CGTCGTCGGGACTGCGTTGGTGGACATGTACGCCAAATGCCGTGATGTTTCGGCTGCTCAGCGGGTTCTTGAGGAGATGG
AAGAGAAGAATGTGGCCACTTTTACGGCTCTTGTGGGCGGGTTTGCCTCAGCCAGAAGACCTGGTGAGGCCATGATGTTT
GTCAGGGAGATGGAACAGTCAGGGGTGGCACCAAACATGATGACATACAGCAGCCTTCTCAGCTCATTTGCGAGTCCTGA
AGACCTCAATCATGGGAGGCAAGCGCATTGTGCGGTGCTAAAGAAGGGTCTCGAGCACAATCCGTATGTTCTGTCCACTC
TTATGACCATGTACTCCAAGTGCGGCATCTTAGATGATTTCAGGAAGGTGCAGATGAGTGTTTCCTGTCAGGATCAGGTC
TCGCTCAACTCCGTGATCTCGGGGCTCTCCTGTTTGGGAAGAGGTGACGAGGCATTTCAGCAGTTCTTGGAGATGAGACG
GCATGGCGCTGACACAGATATGTTCACCTTTGGCAGCATGCTGAAGGCTATAGGGAGCTCATCCTCACTGCTAGAGGGAA
GACAAGTCCATGCTCTCATCCTCAAAACTGGGTATGAGTCTGATGTGAATGTCCAGAATGGATTGATTTCCATGTACGTC
AGGCGCGGCGAGATAGGGGAAGCCAGGGATGTTTTCACTTCGGTGGAAGCGCCTGACTTGGTCTCCTGGAATTCGCTTCT
GACAGGATATGCTCAGCATGGTTATGGCAATGAGGTGGTTGAGGTGTTTGAACAGATGAGGAGACTGAATGTTCAGCCAG
ACAACACAACCTTCTTGTTGGTGCTTACAGCTTGCAGCCACGCCGGTTTGGTGGATACAGGGTTGGAGTACTTCAACTTG
ATGAAAACAAACGGGTTTCTCGCAGGGGCACGGCTAGAGCACTACGCGTGCGTGGTCGATCTTCTTGGTCGAGCAGGCCA
TCTCCAAGAAGCAGAGGCTTTGATCAACGACATGCCTACTGAACCTGGCGTCTCGGTGTACAGAGCTCTGCTTAGTGCCT
GCCAGATCCACGGCAACCTTGAGATTGCGGTCCAGGTGTCCACGCGCCTGATCGAGCT--------CTACCCTCACGACT
CCTCTGCCCATGTTCAGCTGTCAAAGGCCTTTGCCGGTGATGGCCACTGGGGTGATGCTGCCGAGATCAGGGAGGCCATG
GCAGGTAAAGGGATAGTGAAGAACCCTGCTTGGAGCTGTGTCGAGGACCAGGTACAGGTTGGATAAGAAGGTTGAGATCC
CTTAAATTCGCCGTTGTTAACTGGGAGTGACTTAATGGTCAGCTTTGTTGCAGTGTTAACTGAAGGTAATGCCAGAAACC
ACTCATAAATCCGACGAACCTCTGAAATCTGTCTCTGATATATTTCGGAGAGCAGAGATGGCTCATGGCATCAATGGATA
AGAAAGCACAGGTCATGTGCCATCACAGTATCCTGTACTTATACATCATTAAAGCACATGAATTACAGCACATTTGATAA
AATTTCCTGATATTGCAAGGATGTTCTGCTACTGAAACCAAGACCACTCGAGTGCTGGGTAACCAAAGCCTAAGATTAAA
ACTGTCAGGATCCAGATCTGATACGTGAAGAAGACAGGTCATTATGTCAGACCGTTACTTGTTTTTAGGGAGATCAACAC
CTGTACCTCAGTTAACTGATGCAGGCTAG---------------------------------------------------
---------------------------------------------------------ATAAGAAGGCTGAGATCACAGCA
TCCTGTACTTATACATCATTTACAGCATATGAATTGCAGCAATGTTGAT-AAAAAAATCCCCTGATACTCCAAGAATTCA
TGCTGCTGGAAACAAGTCTATCGGACCGCCGACTGACGAAAGGCTGAGATTAAACTCACGAGGACCCCAGGTTTGAC---
-----------AACAGGTCAGTTTATCAGCACTTTACTACTGTACTTTTTAGGAAAAAATCAGCACCTTTACTTGTCTTT
AGGGAAAATCAGCACCTTTACTTGCCATTCAACCATGAGGCATGCAC---------------------CATTACGGC--C
TATGAATTGCAGCTTCATTTTCCAAATTCTGTGTGCACG----CGCGCACGCAGGCAGGCAGCTTTGGTGCCTGCCGCCT
GAAGCATGGCTGGGCCGGCCGGGCCTTTCTGCCTTGGGCCAGAACACACGTGCGCCAGGCTCCCCCTC--CGATACCACC
GAGG
>chr3D_971
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---------------------------------------------------GCGAGCCCGCGCACTTGCTCTGTCGTCCC
AATGCCTCTGCTGGCCCCCGGCA---TCCTTCGCCACGCGCGGACGCGGCGGGGGTTCGTGTAGCTCCTCG---------
CCTCCACCTCCTCCTCGGTTACGCCGAGCCCATCCTCCGCGGGGTAGTTCCATGGGCTGGCCACCAAGCTCGGCCTCGCG
GCCAGCAACGTCTTCGCCGGCGCCGCCCTCCCTGCCTTCTATG------GCCGCCGCCTTCGCGACGCCC-GCGGCTGTT
CGACGAAATGCCTGAGAGGAGCGGCGTCACCTGGAGCGTGCTCGTCTAGGGCCACGCGTGGTCCGGCGCGGCCGGCCTCG
CCCTGGGAGCGTTCAGACCATCTCTAAGA---------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------AGGGGCATGGCCAGAGCACTACGCGTGAGTGGTCTATCTTCTCGGTCGAGCAGGCCA
TCTCCAAGAAGCCGAGTCTTTGATCAGTGGCATGCCTATAGAACCTGGCGTCTCGGTGTACAGAGCTCTGCTTAGTAGCT
GCCATATCCGTGGCAACCTTGGGATCGTGATCAGGATGTCCACACACCTTATCAAGCTCTAGTGCTCTACCCTCACGATT
CCTCTGCCCACGTTCAGCTATCGAAGGTCTTTGCCAGTGATGGTCACTGGGGTAATGCTGCTGAGATCAGGGAGGC----
--------------------------------------------------------------------------------
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----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S----------S-----S-------S--
------------SSSS---------S-----------SS-------S---------------S-S-----S---S-----
-S-----------S-S--------S------------S------------------------------S----------S
-------------------------SSS---------------S----SSSS-S---SS-S-------S--------S--
SSS---------------------S---S------------------------------------------S--------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
------------S-------------------------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S----------------------S--------------S-----------------------------------------
--------------------------------------------------------------------------------
----------S------------------------------------------------------------------S--
-----------------------------------S------------------------------------S-------
---------------------------------------------------------------S----------------
--------------------------------------------------------SS------S--S-----------S
-----------------------------------------------------S---S-S--------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------SS--------------S-------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S---------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---S-----------------------------
------------S---------------------SSS-S-----------------------------------------
--------------------------------------------SS----------------------------------
--------------------------S-----------------------------------------------S--S--
--------------------------------S-------S------------------------------S--------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SS---S-SSS---
-------------------------------------------------------S-------------------S----
-----------------------------------------S--------------------------------------
----SS------S---------S-----------------------------------------S---------------
--------------S----------------S--------------SSSSSSSSSSSS-------S-----------SS-
-------------------S-------------------SSSS------S------------------------------
-------------------------------------------------------SS-SS--------------------
----
>forward_47
---------------------------CGAAGAACCCACCAGAGCAT---------------------------------
--------------------------------------------------------------------------------
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----
>reverse_2067
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------GCTGCTGGAGGGAA
GACAAG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_101
--------------------------------------------------------------------------------
-TCGCGCCTGTTGGATAAGTT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_2181
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------GTCCAGGGATGTTTTCGCTTC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_116
--------------------------------------------------------------------------------
----------------AAGTTACGACCAGAGCCTGC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_2182
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------TCCAGGGATGTTTTCGCTTC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_291
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GGAGGGAGTGGAGGAAGACT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----
>reverse_2247
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------CTATGCTCAACATGGTTATGGCA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_1905
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------AGGTGCAGATGGCTGTTTCA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_3308
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GCGACGAGTAATTTGGAACGG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
