>input_sequence_44453
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-------------------------------------------------------------ATGGACGCGGCGATGGAGG
ACGCGG---------GGAGCGAGTGGGACCGCGGCAGCGGCGGGGCCGACGCGGTGCTGGGCCTCGCCGGCGCCGGCGCC
TCGCTGTCGGTGTGCTACCACGAGGCCTTCGGCCCCCACGCCGACCTCATCCTCCTCGAGGCCGCCGACGACCTCCTCCC
CGACCTCCTGCAAGGCCGGTAAGCCCCTCTCCTCGAGATTACCAAGCTTCTGATCCAATCGGTCCTCTTTATTCAGAGCC
GAGCTCTT------TTTTCAGATCTTCGATTTGGGCCAT---TTAGCTGTGAAATCCCTAGACCAGTCGATGTAATATCT
TA---GTTGATATGTACAGTAGTTCTTGATTCTTAGCCCTTCAGTCAGATGAGTACACGATCTGTGGGCTGTGGCAAAGA
GCATCACCATGGAAAAACTTAGTTCGTTGACTGTTCCTGAGCCGAAGGCTGAGGCCTGTTA------AATAAACAGTGAA
ATTTGCCACAGCTATGTTATT---AATCAGATCTTTGCACCACTAGTCCAGCTTCAACTGAGAGATCATTATCTGTCATG
CTATTGGTGTACAGTGGGCACACACACGGTGTTTCCATCTGAGAAAA--TTTGATGAAGAACTCTCTTGATGCAGGGTGA
CAGTAAGGGGCCGCCCTGAAGAAGAAGCTGTT------CTGTGCACACCATCGGCGACCTACGCTATGAAGTTTGTGGGC
ACATCCAACTCCATGTTCCTCATACCACCCGGTGAAGCTGTCGCGGCAAGCCTAAGACCCGACCATACCAATGAGGATGC
TACCGTCGCCAGCGATGCGGCCGCTTCGACCATCAAGGTTGCACCAGGGAGCATCGAATTAGTCCGAACGGCTCCGCGGC
TCGACAAACTCAGCAGCCTTCTCAGGGAGAGGCCATACGTGCTTGATGAGGATCTTGGAGATGGCTCTGAAGACAAGAAG
GGGCTGTACACGTGGCAAGACCTATGTGTGCTTGTTCAGTCCAGTGACAGCGAGCTGCTGGAGGGGCTGAATTCCCTCTC
GGCTGTCGAGATTGATGGGTTCTGGAGGACCGTGGATGTCGGTTCCGTGAACACGGTTCTGGACATGATT-------CTG
CACAACTCCGTGTTGCATGACTGGCTGCTAAATGCTTTGCCGGAAAATGCTGTGCTATCTGTCATGGAATCTGACGGTTT
TATCCATAAGATTGTAACCCACTGCCTCAGCAGATTCGGCACGAAGGTTGAGCAAGAAGGAGGAAGTTGTTGGAGGCTTG
ATGAGAGACTGGTCTGCTTGCAGTTTGCCCGAAGAGCGCTCAGCACGGGAAAGATGAAGCTCAACAGCTTCATGGATAAA
TGGGAACGAAGCATCCCTTCAGGAATGCGTCCAGATCTTCAGATGCTTGAAGGGGAAGTGCTGTACGAAAGGCTTGGGGC
TGAGACCTGGGTGCATGCTTTCAGTGTCGCCGATCTGCCGTTGACTCCAGCTGAGAGGTTTGCGGCACTATTCCGGGAGC
GGCCAAGGTGGGAATGGAAAGACCTGCAGCCCTTCATCAGGTATAATTTATACTTC--ATTTTTGTGTGTAGAAACCCTG
TAGTGTAATTCTCACATCTTTCTCACTCAAACATGTTTCCCAATGTTCTATGGTTCAGGGACCTGCGCGTACCTGGTGCG
TCTTCAGAAGGGTTGCTGATCAAGTACACAAGAAGAACGCAACCAAGCGCTGATGCCGATCCTATTTTTACTGCTAG---
-ATAG---------------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G342600
TTCCTATCTTAGTTGAGTGCGTTGTGATGTGAGCAGCGTACAATATCTTGCGATGGGGGTGTCAGGGCGGCGGCACCGGA
TGACGGTCTGC--ATGGTTGCTATACGGCAGACATCATCACAGTGGTGGTTGCTCTCCTCCCGGATTGTGTGGGCAACTG
GAGGCATTGCGGCCAGTAGCTCGGACGTGCCCTCTCTCCG-GAGGGGCGGCATCTTGATCCATATCTGAGGCTCTGACAT
C-TCGCGCTTCCCCTGGTGGCCAGGTGGTGGCACA-----GGTGAGTTACCGAGCGAAAGCTCAGTGCCTTCGCGTTGAC
AGCGGCGACACCCGTGGGTGTCGCGCTCTTCTTGAAGAAGTTGTTATGGTTCTTCTCTCCATGTCAGGGCTCCGGATGAA
GACTTTTTGTCCAGTGTGGACTTGGCAACTACCACACTCTGCACCGTTCTCCTTTGGGAGGGGGCGTTGCTGTGGAGGTT
AGGTGTGCTAGGATCGTACGGTGGG-GTGCCCAGTTCTTCCCGTGCTCGTTAT-GGGTAGCGTAGTCGCATATGCGTTTT
GGGTGTTTCGGATGTCTCGGGATCTGCTTTGTAAGAGGACTACCTCATCATCTTGTATCATTCAGCTATGTACTTCTTCG
AG-TGTTGTTTTAGTTATAAAGCAGGGTGAAAATATGTTTCGAGGTTTTAGTTCGAACTAAAGCTCAACTAAAGTCACGA
CCTTTTTTAGTTTTGTGTGTGTATTCTTCCACAGCAGACTAAAAAAGTTGAACACCGGCAAACTGAGCCTAACATGTGTT
TTCGGGAAAAAAGATAAAAGTGAGAATATTCGTTGCCACACCGTGTACACAGGCTGACCGCCTGACCCCACCAAACCAGA
GCCATTCCCGCGCGAAACGCGCCC-GCGAAAGTATAACGCGCGCCAAAATCAGTCGACACAGCACGCGCCGAGGAAAAAG
ATCC----CGCGAGGAAGAAAGAGGAGCG-ACCAAACTCAGCCGCCTC---GATCCGATCCATGGACGCGGCGATGGAGG
ACGCGG---------GGAGCGAGTGGGACCGCGGCAGCGGCGGGGCCGACGCGGTGCTGGGCCTCGCCGGCGCCGGCGCC
TCGCTGTCGGTGTGCTACCACGAGGCCTTCGGCCCCCACGCCGACCTCATCCTCCTCGAGGCCGCCGACGACCTCCTCCC
CGACCTCCTGCAAGGCCGGTAAGCCCCTCTCCTCGAGATTACCAAGCTTCTGATCCAATCGGTCCTCTTTATTCAGAGCC
GAGCTCTT------TTTTCAGATCTTCGATTTGGGCCAT---TTAGCTGTGAAATCCCTAGACCAGTCGATGTAATATCT
TA---GTTGATATGTACAGTAGTTCTTGATTCTTAGCCCTTCAGTCAGATGAGTACACGATCTGTGGGCTGTGGCAAAGA
GCATCACCATGGAAAAACTTAGTTCGTTGACTGTTCCTGAGCCGAAGGCTGAGGCCTGTTA------AATAAACAGTGAA
ATTTGCCACAGCTATGTTATT---AATCAGATCTTTGCACCACTAGTCCAGCTTCAACTGAGAGATCATTATCTGTCATG
CTATTGGTGTACAGTGGGCACACACACGGTGTTTCCATCTGAGAAAA--TTTGATGAAGAACTCTCTTGATGCAGGGTGA
CAGTAAGGGGCCGCCCTGAAGAAGAAGCTGTT------CTGTGCACACCATCGGCGACCTACGCTATGAAGTTTGTGGGC
ACATCCAACTCCATGTTCCTCATACCACCCGGTGAAGCTGTCGCGGCAAGCCTAAGACCCGACCATACCAATGAGGATGC
TACCGTCGCCAGCGATGCGGCCGCTTCGACCATCAAGGTTGCACCAGGGAGCATCGAATTAGTCCGAACGGCTCCGCGGC
TCGACAAACTCAGCAGCCTTCTCAGGGAGAGGCCATACGTGCTTGATGAGGATCTTGGAGATGGCTCTGAAGACAAGAAG
GGGCTGTACACGTGGCAAGACCTATGTGTGCTTGTTCAGTCCAGTGACAGCGAGCTGCTGGAGGGGCTGAATTCCCTCTC
GGCTGTCGAGATTGATGGGTTCTGGAGGACCGTGGATGTCGGTTCCGTGAACACGGTTCTGGACATGATT-------CTG
CACAACTCCGTGTTGCATGACTGGCTGCTAAATGCTTTGCCGGAAAATGCTGTGCTATCTGTCATGGAATCTGACGGTTT
TATCCATAAGATTGTAACCCACTGCCTCAGCAGATTCGGCACGAAGGTTGAGCAAGAAGGAGGAAGTTGTTGGAGGCTTG
ATGAGAGACTGGTCTGCTTGCAGTTTGCCCGAAGAGCGCTCAGCACGGGAAAGATGAAGCTCAACAGCTTCATGGATAAA
TGGGAACGAAGCATCCCTTCAGGAATGCGTCCAGATCTTCAGATGCTTGAAGGGGAAGTGCTGTACGAAAGGCTTGGGGC
TGAGACCTGGGTGCATGCTTTCAGTGTCGCCGATCTGCCGTTGACTCCAGCTGAGAGGTTTGCGGCACTATTCCGGGAGC
GGCCAAGGTGGGAATGGAAAGACCTGCAGCCCTTCATCAGGTATAATTTATACTTC--ATTTTTGTGTGTAGAAACCCTG
TAGTGTAATTCTCACATCTTTCTCACTCAAACATGTTTCCCAATGTTCTATGGTTCAGGGACCTGCGCGTACCTGGTGCG
TCTTCAGAAGGGTTGCTGATCAAGTACACAAGAAGAACGCAACCAAGCGCTGATGCCGATCCTATTTTTACTGCTAGATA
GATGATCAACCTACCCTGCTACAAAATCCATGTTATGGTTGTGGCCCTTGCCGCTGCTGGTAAACTGCTGGTGTTGCTGC
ATTTGATCTGGATATTGTA---GACAACAGAAGATTGCCGTGGCAGCATTTCAGGCAAGCTACACATAGGCGATGACGCA
AGAGGATTTCTTGTGCCATACAAAGTGTCTGATTCTGCTTTTGGCGCAGACAATTAAGTAATCTGAATTTCCTTTCAGTT
TCTAC---TAGAGATGCAATATCTGTACCTGGGTGCACTGCACACTTGTTGCACATTTACTATATATTTTGTATTTCAGC
ATGTAAGCTCGGTTCTAGCTAGTTATGTTTTCCAG--------------------ATGTTGCCTTCATAATGAGTAGCAG
TGGAAGACTC------GGTAGGCGTCTGAAAACTGAAACTGCGTCGCAGGTTTTGGGCAGGCTGCAAAACTCTATTGTGG
GAGTCAAGTCATTTCTGTTGTGATT-------------------------------------------------------
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-----CATCTGCATTTTTTTTTGTATGGACATCGGA--------------------------------------------
----------------------------------------------ATCCATTGGCTGGAGGAAGAAATCTGCTTATCTG
CATGATGATTCAGTTCAAGTGCAGTGCAGAATAGCCAGCCTCTACATTCTTCTTGCACACGT------------------
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----------------------------------------ACAGCACAGATAAGTTTTTTTTTTTTGGTGTGAGCTGAGG
TC------------------------------------------------------------------------------
---------------------------------------GTGTCCGTGTTGAGGTCGGAATCGGATTACTTATTGAATTT
CCATACGAGGAGGTTTCGGAGGCCGGTGTTGAGTCAGCTCCCTACATTACATTACTAAACAGTAAAACTGAGCTAGTTAG
GAGCATCCACAGCGATTTAAACTCCTTAGCCGTTAGATGAAGCTCGTGAACGTACTGGATTCATCTGCAGCCCCGCACAA
CGTTTTTACCATCATTCATTACCGTCACGGATGGCACTAGATGGCCAGCCCAACTTAGCAGGGCTGCTGCTCTGCTGATT
GATCCAGGTGCGTTCTGATGAACTGGGCCAACAAAGGAGCAACGTGACCCGGCCCAGCAAGCCTTCCCAATGATTCTG
>chr3A_1
TTCCTACCGTGGTAGAGTGCGTTGTCATGTGTGCGGCGCATGCTATCTCGTGACAGGGATGCTGGGGCGGTGGCCCCGGA
TGGCGGTTCACATATGGTTGCTCTTCGGCGGGCATCATTGCGGTGGTAGTGGCTCCCATCCTGCGTTGTGTGGGCAATGG
GAGGTGTTGCAATGGGTAGCCCAGACATGCCCTCTCTGTC-GAAGGGCGGCGTCCTAATCCGGATCTGGGGATCTGACAC
CGTCGCGTTTCT-----------CATGGTGGCACC-----GGTGAGTTGCCAAGCGAAAGTTCCGTGCCTTGGCGCCGAC
GACGGCG--ACCCGTGGGTGTCGCGCTCTTCTTGAAGACGTCGTTGTGGTTCTTCTCTCCATGTCAGGGCTCCAAATGAA
GATCTTTGTCC--GTATGGACTCGGCAACGGCGATGCTCTGCGCCTTTCTCCCTCTTA--GGGGCGTTGTCGTGGAGCTT
AGGTGTGCCATGTCGTAGCGTGGGATGTGTTTAGTTCTCTTCATGCTCTTTGCGTGGTAGCATAGTCGCAT---------
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>chr1A_125
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----------------------------------------------TGGTGGCTCTCCTCTGTGGTTGTGTGATAAC-GG
GAGGTGTTGCGGCTGGTAGCTCAGATGTGCCCTCTCTTTCAGAGGGGCGATGTCATGATCTGGATCTGTGGAGTTGACAT
GGTCGCGTTCCTCCTGACGGCCACATGGTGGCACCGCATGGGTGAGTTGCCAAGCGAGAGCTCCGTGCCTTGGTGCCAAC
GACAACATCACCCATTGGTGTCGCACTATTCTTGAAGACATCGTTGTGGTTCTTCTCTCCATGTCAGGGCTCCGGGTGAA
GAACTTGGTCC--G-GTGGACTCGGCAGCGGCGATGCTCTGTGTCGTTCTCCCTTTT--GGGGGTCTTGCTGTGGAGCCC
AGGTGTGCTTGGTCGTTGCGTGGGG-GTATTTAGTTCGTCCGATGCTTCTTGC-TGGGAGCGTAGTTACGTGCGTTCTAC
GTGTGCT--GGGTATCTCAAGATCGGCTTTGTAAGAGGTCTACCACA-CATTTTGTATCGTTCGGACATGTACTTTTTTC
AGATGTCGCTTTATTTATAAAGCAGGACGAAAGCCTGTTTCGAG------------------------------------
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>chr5D_768
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-----------------------------------------------------------AAATTGAGCCAAAGTTGTGGT
TTCGGGAAAAAT----AAAGTGAGAATATTCGCCGGCATACCCTGTACACAGGCTGACCGCCTGACCCCACCAAACCAGA
ATCATTCCCGCGCGAAACGCGCCCCGCGAAAGCATAACGCGCGCCAAAACCAATCCATACAGCACACGCTGAGGAAAAAG
ATCC----CGCGAGAAAGAAAGAGGAGCG-ACCAAGCTCAGCCGCTTCCCGGATCCGATCCATGGACGCGGCGATGGAGG
ACGCGGCGGCGCCCGGGAGCGAGTGGGACCGCGGCAGCGGCGGGGCTGAGGCGGTGCTGGGCCTCGCCGGCGCCGGCGCC
TCGCTGTCGGTGTGCTACCACGAGGCCTTCGGGCCCCACGCCGACCTCATCCTCCTCGAGGCCGGCGACGACCTCCTCCC
CGACCTCCTGCAAGGCCGGTACGCCCCTCTCCTCGAGATCGCCCTGCCTCTGATCCAATCGGCCCTCTTTATTCGGAGCC
GTAC-CTT------TATTCAGATCTTCGGTTTG----GGCCATCAGCTCTGAAATCCCTAAACCAGTCGATGTAATATCT
AA---GTTGATATGTA-----GTTCTTGATTGATTATTAGA-AGTCAGATGAGTACATGATCCGTGGA-------TACGA
GCTTCACCATGGAAAAGCTTAGTTCGTTGACTGTTCCTGAGCCGAAGGCTGAAGCTAGTTA------AGTAAACAGTGAA
ATCTGCCACAGCTATGTTATT---AATCAGATCTTCGCACCACTAGTTCAGCTGCAACTGATAGATCACTATCTGCTATG
CTATTGCTGTACAGTAGGCATACTA--GGTGTTTCCATCTGAGAAAA--TTTGATGAAGAGTGTTCTTGATGCAGGGTGA
CAGTAAGGGGCCGCCCTGAAGAAGAAGCTGTT------CTGTGCACGCCATCGGCGACCTACGCTATGAAGTTCGTGGGC
ACATCCAACTCCATGTTCCTGATACCACCCGGCGAAGCAGTCGCGGCAAGCCTAAGACCCGACCATACCAATGAGGATGC
TACCGTCGCCAGCGCTGCGGCCGCTTCGATCATCAAGGTTGCACCGGGGAGCATCGAATTAGTCCGAACGGCTCCGCGGC
TCGACAAGCTCAGGAGCCTTCTCAGGGAGAGGCCATACGTGCTTGATGAGGATCTTGGAGATGGCTCTGAAGATAAGCAG
GGGCTGTACACGTGGCAAGACCTATGTGTGCTTGTTCAGTCCAGCGACAGCGAGCTGCTGGAGGGGCTGAATTCCCTCTC
GGCTGTCGAGATTGATGGGTTCTGGAGGACCGTGGATGTCGGTTCTGTGAACACGGTTCTGGACATGATT-------CTG
CACAACTCTGTGTTGCATGATTGGCTGCTAAATGCTTTGCCAGAAAATGCTGTGCTATCTGTCATGGAAGCTGACGGTTT
TACGCATAAGATTGTAGCTCATTGCCTCAGCAGATTCGGCACGAAGGTTGAGCAGGAAGCAGGGAGTTGTTGGAAGCTTG
ATGAGAGACTGGTCTGCTTGCAGTTTGCCCGAAGAGCACTCGCCGCAGGAAAGATGAAGCTCAACAACTTTATGGATAAA
TGGGAACGAAGCATCCCTTCAGGAATGCGTGCGGATCTTCAGATGCTTGAAGGGGAAGTGCTGTATGAAAGGCTTGGGGC
TGAGACCTGGGTGCATGCTTTCAGTGTCGCCGATCTGCCGTTGACGCCAGCTGAGAGGTTTGCAGCACTATTCCGGGAGC
GGCCAAGGTGGGAATGGAAAGACCTGCAGCCCTTCATCAGGTATAATAATGTACTGCAATTCTTTTTGGTAGAAATTCTG
TAGTGTAATTATCATGTGGGCATCTTCCTAACAACTTTCTTCCTG---TATGGTTCAGGGACTTGCGTGTACCTGGAGCG
TCTTCAGAAGGGTTGCTGATCAAATACGCAAGAAGAACGCAACCAAGCGCTGATTCCGATCCTATTTTCACCGCTAG---
-ATGATCAACCCACCCTGCTACA---TCGATGTTCTGGTTGTGGGCCTTGCTGCTGCTGGTAAACTACTGGTGTTGCTGC
ACTTGACCCGGATGTTGTTGTCGACAACAGAAGATTGCTGTG--------------------------------------
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>chr5B_776
CCTAACTTGT----------------------------------------------------------------------
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------------------------------------------------------------------------------GT
TTTGGGGAAAAT----AAAGCGAGAATATTCGCTGCCATACCGTGTACGCAGGCTGACCGGCCGACCCCACCAAACCAGA
GCCATTCCCGCGCGAAACGCGCCC-GCGAAAGCATAACGCGCGCCAAAACCAATCCATACAGCACACGCCGAGGAAAAAG
ATCCCGCGCGCGAGAAAGAAAGAGGAGCGGACCAAGCGCAGCCGCTTCCTCGATCCGATCCATGGACGCGGCGATGGAGG
ACGCGGGGGCGACCGGGAGCGAGTGGGACCGCGGCAGTGGCGGGGCCGAGGCGGTGCTGGGCCTCGCCGGCGCCGGCTCC
TCGCTGTCGGTGTGCTACCACGAGGCCTTCGGCCCCCACGCCGACCTCATCCTCCTCGAGGCCGGCGACGACCTCCTCCC
CGACCTCCTGCAAGGCCGGTACGCCCCTCCCCTCGAGATCGCCCTGCCTCTGATCCAATCGGCCCTCTTTATTCAGAACC
GCATTCTT------CATTCAGATCTGCGATTTTGGGCGGCCATTAGCTGTGAAATCCCTAGACCAATCGATGTAATATCT
TACTAGTTGATGTGTG-----GTTCTTGATTTCTAGCCAATCAGTCAGATGGGTGCACGATCTGTGGGCTGTGGCAAAGA
GCATCACCATGGAAAAACTTAGTTCGTTGACTGTTCCTGAGCCGAAGGCTGAGGCCTGTTAGTGTTAAATAAACAGTGAA
ATCTGCCACAGCTATGTTGTT---AATCAGATCTTTGCACCACTAGTTCAGCTGCAACTGAGAGATCATTATCTGC----
-------TGTACAGTAGGCACACAT--GGTGTTTCCATCTGCGAGAAATTTTGATGAAGAACTCTCTTGATGCAGGGTGA
CAGTACGGGGCCGCCCTGAAGAAGAAGCTGTT------CTCTGCACGCCATCGGCGACCTACGCTATGAAGTTCGTGGGC
ACATCCAACTCCATGTTCCTCATACCGCCCGGCGAAGCGGTCGCGGCAAGCCTAAGGCCCGACCATACCAATGAGGATGC
CACCGTCGCCAGCGATGCCTCTGCTTCTATCATCAAGGTTGCACCGGGGAGCATCGAGTTAGTCCGGACGGCTCCGCGGC
TCGACAAGCTCAGGAGCCTTCTCAGGGAGAGGCCATACGTGCTTGATGAGGATCTTGGAGATGGCTCTGAAGACAGGAAT
GGGCTGTACACGTGGCAAGACCTCTGTGTGCTTGTTCAGTCCAGCGACAGCGAGCTGCTGGAAGGGCTGAATTCCCTCTC
GGCTGTCGAGATTGATAGGTTCTGGAGGACGGTGGATGTCGGTTCCGTGAACACGGTTCTGGACATGATT-------CTC
CACAACTCTGTGTTGCATGACTGGCTGCCAAATGCTTTACCAGAAACTGGTGTGCTATCTGTAATGGAATCTGACGGGTT
TACCCATAAGATTGTAACCCACTGCCTCAGCAGATTCGGCACGAAGGTTGAGCAGGAAGCAGGGAGTTGCTGGAGGCTTG
ATGAGCGACTGGTCTGCTTGCAGTTTGCCCGGAGAGCGCTCAGCAGGGGAAAGATGAAGCTCAACAGCTTCATGGATAAA
TGGGAACGAAGCCTCCCTTCAGGAATGCGTGCAGATCTTCAGATGCTCGAAGGGGAAGTGCTGTATGAAAGGCTCGGGGC
TGAGACCTGGGTGCATGCTTTCAGTGTTGCTGATCTGCCATTGACTCCAGCTGAGAGGTTCGCGGCACTATTCCGGGAGC
GGCCAAGGTGGGAATGGAAAGACCTGCAGCCCTTCATCAGGTATAATTTGTACTGT--ATTTTTTTGTGTAGAAATTCTG
TAGTGCAGTTCTCACATCTTTCTCACTCAAACATCTTTCGCAATGC-CTATGGTTCAGGGACCTGCGCGTACCTGGTGCG
TCTTCAGAAGGGTTGCTGATCAAGTACGCAAGAAGAACGCAACCAAGCGCTGATGCCGATCCTATTTTCACTGCTAGATA
GATGATCAACCTACCCTGCTACA---TACATGCTCTGATTGTGGCCCTTGCTGCTGCTGGTAAACTGCTGGTGTTGCTGC
ACTTGGCCCGGA---TGTTGTCGACAACAGAAGATTGCCGTGCAGGCAAGCAA----------ACAAAGGCGATGACGCG
AGAGGGTTCCTGTAA--------------------------TGGTGCAGACAACTAAGTTACCTGAATTTCTTTTCAGCT
TCGACAGTTAGAGACGCAATATCTGAACCTTGGCCCACTGCTCACCTGTTGTACGTTCATATTTATA-------------
ATGTAAGGCTTGTCCTAGCTAGTTATGATTTCAGATGTTGCCTAAAAAAGAATTTATTATGGGTTCAGAATGAATAGCAA
TAGCAGAGGAATGCATGGTAGGCTTCCGAGAACTGAAATCGCATTGCAGGTTAACAGCATACCCCTGTTGTGGGGCTGAA
TTTTACACCGTTCCATTAGAAACATGATATCTGAGCCTGGGGGCACTGCACGCTTGCTGTACATTTGCAATATTTCCTGA
ACTTTATAAGGTTGGTGCTAGCCGGTCGTGTTTTTTGGATGTTTGTCATAAAAAAATTTATTTACGGCTCCAGAATGAAT
AGCAGTGGAAGGCATCGTAGGCTGCTTGTGAGAACTGAATTTGTGTCGCCAGGTTGACTGCACCCATCCTGTTCCGACAG
TCGGTGTGATTGCTTCACATGAATTTTGCAAGAATTCAGAGTAACTGTTACAAACCCGGCCTGTCATTTTCAAGATGTAA
ACGAGCATCAGAATCTTTTGTTGTTTGAATACAAATTGTTGACGGGTGCGAGATTCCAAACATGGCTTGTTCTTGTAGTC
ATTATGCTTATCTAGCTGTGAGGAACAAGTAGAAGCTCTGCCTGCTATACATAGGCTGAAGGAAGAAATCTGCG------
-----TGATTCAGTTCAAGTGCAG-----AATAGCCAGCCTCTGCATTCTCCCCGCACAGTACAATACAGATAAGTCCCC
TCGCGAGCCGCCGCCGCCAACAGATCGCGTCCGCCCTCCCCTCCCCTACCCCCTCCCGCGCGGGCGACCGAGGGGCCCTA
GCCCCCCCTCCCCCCCGCGCGCCTTCCCCTCCCCCTCCCCCCTCCGCCGCGCGCAGGTGGTCGATGTCGGCCAAAGCCCG
TGCGGCGGCGGAGGTACTGCCTCCCCTCTCAGGTCTATGGGTGGCGCGGGATGCCTCATCTTGAGGGTGTGATACCGATC
TGGATAGTGGCGGCCGGATGGACAACGACGTCGTGGCAACCGCCCAGCGTCCCAACAGTGGCCTTGGCGGCAGGGCCGGT
GTAGCCCTTCCCGATCAGGGTCGGAGGGCCCTGGATCAGGGGCGGCGGCCCCTAGGATGGCCTCCTTGTCCGGTGGCGTG
GTGGGGTGGGAGGGCTGCCGGGATCGGACCGGATGGCCGGAGATTCACAAGCGGGTTTGTGCCGCGGCTTGCTGCCCCGG
TGTCCAATGGTGTCGAGCTGCTTCTTCCTCCAACCCATGTTGTGTGCACTCCGTCTTACCGGACATGGCTGCGCTGCTAG
CCGGTTATCGGGTCGGGACGGAGCGGGAGGTGGGGATCCAGATTGGGATAATTCCCAGGTCGGCTCATGCCGGCGGTGAC
GGCGACAACACCCGAGGGTGTTGTTTTTCTTCTTGGGGACGTCATTTGGATCCGCCATACCTTTTCCCACCTCACGGTCT
CTCGGGGTGAAAACCCTAAGGCGATGATGACACTCTTGGCGTCATGCCCTTCTTGAAGGCATCGTCGTGAGAGTTATGTG
GCGGTGGGCACCGTTTGGGTGCATCGGCAGTTGCAGATGGCGTGCCCCTCTTCATCCAGGTGGTAGCTGTTACGGGGGAA
ACCCTAGGTCTGGGTCTATCGGATCAGATGATGACGGAGACTTTGGTGCCGTTCTCCCTCCTGGGTGCATCGTCTTTGGA
GCAGCGATTCACTGGAGAGGCCAACATGTGGAGCGGTGTTACATCGACCGCATTGAAGACGGCGGGTCTCGACGGCGTGG
AGTAGTGGAGTCTTAGAGTTGGACGTGGTTTGATCGACGCACGTAGGTTGGTGGTGTAGAAGTGCATGCTCTAGCCAATG
CAACCAAAAGACCGATCTGATGGAAAAGACTAGGCAGCACATTATACGTCAACACTCCCCCTCACTTGTGGCTCCCTCAG
GCCTAAACGTGGACCGAAAATGGGCTGCAATTTAATTGCGTCAGCCGGGTCTTGAACTCAAGACCTCTTGGCTCCGATAC
CATGTAGAAGTGCATGCTCTAGCCAGTGCAACCAAAAGACCGATCTGATAAAAGAGACTAGGTAACACATTATACGTCAA
CAGGTGGTGCTGCCTGGTGTCATGGTGACGTCGACGGCAGATGAGACTAGCAAGATCTATGCAGTGGTTGCTCCTGAAGA
CGGGATGACAGAAGATGGCGGTGGCGGGTCCTTGAGTGTGCGCATGTGGTGCATGTTATAGGACGCCTAGACCGGATGGT
ATTAAGACCCCTGGATTATGTTGTGTTTGTTATGCGGATAAGGCACGCCTGTATTGGTGTAGGTGTAGCGACTTTGTTCG
CTTAGAAGGTGGCTTCGGGTTGATCCTTGTATTAATTTTGCCAGACTCTGATGAATAACTAATAAATATAGCTGTGTGCA
TCATGATGATGCAGAGGCCGGGGTAATCCTCCTTAAAAAAACAGTACATATAAGTTTTTTTTTTGTGTGAGCTGAATATG
CAGGGACCAGGCCGGAAAGAAGCCCACGGGCCGGCTACTCGGACCGACGTGTAGGCCCATCTACACAAAGCAACAGTCCA
CGTCCAAGCCGTATGCATGCTCCGTGTATAGCTGTTCTTGTGTCCGTGTTGAGGTCGGAATCGGATTTCT----------
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>chr6D_1159
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--------------------------------------------------------------------CGACCTCCTCCC
CGACCTCCTGCAGGGTAGGTAAGCCCCTCCCATCGAGATCACCCTGCTTTTGATCCAATAACCTGTCCTTAGAGGTTAGA
AGTCAGAACCACGCTCTTTTGATCTTTGATTAG----GGCCATCAACTGTCAAGTTCCTAGGCCAATCGATGTACTATCT
AA---GTTGATATGTA-----GTTCTTCATTATTAGCCCATTAGTCAGATGAGTACACGATCTGTGGA-------AAAGA
GCACCACCATGAAAAGTACA----CGTTGACTGTTCCCGAGCCGAAGGCTTAGGCTG------GTTAAATAAATAGTGAA
ATCTGCCACAACTATATTGTCATAAATCACACCCTTGCACCACTAGTTCAGCTGCAACTGACAGATCATTATCTGTTATG
CTATTGTTGTACAGTAGGCACACAT--GGTGTTTCCATCTGTGAGATAATTTGATGAAGAGTTCTCTTGATACAGTGTGA
CAGTACAGGGCTGCCCCGAAGAAGAAGCTGTTGCTGTTCTCTGCATGCCTTTGGCGACTTAGGCTATGAAGTTCGTGGGC
ACATCCAATTCCATGTTCCTGATACCACCTGGCAAAGCAGTTGCGCCAAGCCTAAGACCTGACCACTCCAATGAAGATGC
TACTGTCGCCAGCGATGCGTCCGTTTCGATAATCAAAGTTGCACCTGGTAGCATCGAATTAATCTGAATGGCTCTGCAGC
TCGACAAACTAAGTAGCCTTCTCAGGGAGAGGGCATATGTGCTTGATGAGGATCTTGGAGATGGCTTCGGACATAAGAAG
GGACTCTGCACGTGGCAATTTCTCTGTGTGCTTGTTCAGTCCAGCGACAGAGAGCTGGTGGATGGGCTGAACTCCCTTTC
GGCTGTTGAGATTGATGGGTTCTGGAGGATAGTGGATGTCAATTCTGTGAACACGGTTCTGGACATGATTGATGATTCTG
CACTACTCCTTGTTGCATGACTGGTTGTTAAATGCTATGCCAGAAAATGCTGTGCTATCTGTCATGGAATCTGACGGTTT
TACCCGTAAGATTGTAACCCACTGCCTCGGCACATTCGGCATGAAGGTTGAGCAGGAAGCAGGAAGTTGTTGGAGGCTTG
ATGAGAGACTGGTATGCTTGCAGTTTGCCTGAAGAGCGCTCGGCGCGGGAAAGATGAAACTCGACAGCTTCATGGAGATA
TGGGAATGAAGCATTCCTTCAGGAATGCGTGCAGATCTTCAGATGCTTGAAGGGGAAGTGCTATATGAAAAGCTTGGGGC
TGAGACCTGGGCGCA-----------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>SNPs
--------S-S--S-----------S-----S--S---S-SSS-----S-S--SS---S--SSS------S---S-----
--S----SSS------------S-S----S-S------SS-S--------S----------S--S------------SS-
----SS-------SS-------S--------------SSS-----------S--S------SS-----S--S--------
-------S---S----SS-----SS---------S-------------S--S-----------S-------S---SS---
SS-----S------------------------------S--S---S----------------------------------
--SS---SSS-SS---------S------SS-S-SS------S---------S--SSSS------------------S--
------------SSSS-S--SS-------SSS----------S-----S--SS-S----------------SS-SSS-SS
-S---S-SS--S-S----SS----S-------------S-----S--S---S-------S---S-SS--------S--SS
------S-S----S------------SS----SSS---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------S--SS----S-
-----------SSSSS----------------S-----S-----------------------------------------
--------------------------------S----------------S--S--S-S-------S--------------
--------------S--------------------S---------S----------------------------------
-------------------------------------------------S------------------------------
----------------------------------------------------------------S---------------
---------------------------------------S---SS-----------------S-----------------
-SS------------S-------------------S-SS-----------------------------------------
----------------SSSSS----------S-------S----------------------------------------
--------------------------------------------------------------------------------
--S--------------------------------------------S-----S----------------------S---
------S--------S--------SSS-----------------------------------------------------
----------------------------------------------S--------------------------S------
--------------------------------S-----S-----------------------------------------
-----------------------------S---------------S----------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--S---------------------------------------------------S----S--------------------
--------------------------------------------------------------------------------
------------------------------S----------------------------------S--------------
--------------------------------------------------------------------------------
-------------------------------------------------S-----S--------S----------SS---
----------------------------------S----S-----SS---------------------------------
---------------------------S----------------------------------------S-----------
-----------------------SSS--------S----------------S----------------------------
-S----S-S----S----S-----------------------SSS---SSSS-SSSSSSSSSS---S------------S
-----S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------S-----S-S---------S------S-
--S-----------S----------S----S--SS------S---S-----S--S--S-SSS-SSSSSSSSSSSSSSSSS
-------SSSS--S-------------S----SSS----------------------SS--SS----S-----S-----S
-S-S---SSS-------------S--S--S--------SS--S-S-------SSSS---SS-SS-SSSSS-SSSSSSSSS
SSS-SS-SSSS-SSS-SSSSSSSS--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-S--S----S----S--S-S-SSSSS--------------------------------------------
------------------------------------------------S---S-----S--------------SSSSSSS
SSSSS-------------------SSSSS--------------S------S-SS-----SSS------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S---S---------------S--SSSSSS-SSS-S-
SS------------------------------------------------------------------------------
-------------------------------------------------------------------S--SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_501
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GGTGTGCTAGGATCGTACGG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_1754
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TGTGGGC
ACATCCAACTCC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>forward_1240
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AAGCCCCTCTCCTCGAGATT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_2934
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GGCAAGCTACACATAGGCGA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
