>input_sequence_44445
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-----------------------------ATAGGTATCCTCAGTTGTTCTTCACCCCCAC---CCACC-----CCAAATG
GCCAATTTCAAGGTCACTGGTTATGCCGGGGCAC---TGGAAAACACTAAGCTTGACTTCCAAAGCTTGTATTTGCATAG
GATTAATTCTGGGGATAAGAAAAACCAGTATGTAGTGATAGATGGATTTGGTACTACTGACCTTGGTCTCACAACCATCA
ACGACTGGGCAATATATGATGGTGTGGCCCCGGACGCAAAGCTAGTCGCTCGTGCAAAAGGCATTCGTGTGAA------T
GCTGCTGACTGGTGCAATTTATTCATCATAGTGTTCGAGCTTGACAGGTAACTTGTCTGTGTTTTGTCCTGTAATGTGCT
AACATGTTACTCTTCTTTAGCTAGCATCACATTGTCTTGGTACATGCATATG--ATATTTGTGAATCACACAGTTTTAAA
GGATCCACGCTTTCTGTAATGGGAGCAACTGCTGAGGAACAAGGTGAATGGGCTATTGTTGGTGGGACTGGCGACTTCGC
TATGGCTCGTGGTGTCATCCAGAGAAAAATACATCAAAAGGTAGCAGAT------GGAGATGTATTAGAGCTTACTATCG
ATGCAGTCTGCCACAGGAAGGTGAGCGTTATATTCAATTTTGTATAGGTT-----------TTCCTCACTC-AAACTTTA
GATTTTACATACG----CATACATTTTGCAAA---TATC----GGATCACACAAACCTC--------TCTACCGGTATTC
CAAATCGTACAATT-TTTTT-GTTTCTGCTTTTATTTCTACTCTTACGAGCAAGTTGGATGTGCATTTCTCAAAGGAAAG
-AAACATTGCTGACAATGTTTCACTACTTGCAT----ATACAGGGGCAGCCTTCAC---------CCACTCCGCAGCCTC
CTGCCCCAAGCCAGCCGATTCAGCCTCCTGTTCAGCCGCGTCCTGCCCCCACTCCCATAAAATATGGACCATGGGGTGGA
ACTGGTGAAAAACTTTACCAGTTCAACCCAAACATGTCTGTACGCCTAAAGAGTATGACGGTCTTCCGTCATTATGCTGT
TAATGGACTTACTTTCACTTATATCGGCCAAGATGGCCAGGAACACGCCAGCGAACTTTTTGGTAATAGCGTTCTTCGTG
GCAACAAAGTTGACAGTGTGAGTTTTGTTCACTATTCGTTTCCTCATCCATTTGATCAATAATATGTTTCG---TCTTCT
TGTCCTTGTTCATTGAGATTCCAAAATTATGGCATCACTTATGGTTTGGTTTTGTCCATTTGGCAGCAAACATTTCAGCT
AGGCCCAACGGAGTTTCTGACGGGGCTGTCAGGAACATACGGCCATGAATCCAGATCAAACAATATTGCTATGTATTCCC
TTAAGCTGGTCACTAACCTCGGCAACACTCATGGACCTTTCGGAACTCCTGGGATAGGCACCCCTTTCAGCTTTTCCGTG
CCTCAGAACAACAGAATTGTGAGCTTCTTTGGGGGATCTACGGGTTACGCCATCAATTCAATTGGTATCTACACGCTCGA
CAATTCTGCTTAGCAAGCATGTTTTACTTGGTGCAGCTACAATTTTCGACTGTAGCAATAAGAGGGCTAGGGTTCTCCCT
AAACCAGCCTTGCTTTATTAGTTTTATTTTACACTTATATTTAAGATGGTAAGGATCTACCTACACCATGCCACAAGCAA
TTTATGGTTCCTGTACCTTTTTTTCTTCAAAAAGCTCGCCAGCTCCGTGGCATGTAAGGCTAGAATCATCAGAATAAA--
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----------------------------------
>chr7D_1_TraesCS7D01G434300
GCGGCGACGAGACATAAGAATGCGTCGGACCGGTTTGTACCCCAAACCCAGTACGTGGCTCGGTTGGGGCCTCCGGCTTT
ATATGTTAGGCTTTGGGGCGATGTCTGCTTGGTATTAGGCTCGGACTATCGGCACCCCTTCGTCAAGTGAATAGGAGTAG
AGACAGTTGTTGCTAAGATGGTGGCTTCAGACTACTTGATATACTATTTTGTACATCATTGTGAATAATTAATAAAATGG
CAGTATGCATCGTTTAGATGCAGAGGCCAGGGATAATCTCCTTTTAAAAAAAATGTCACCAG---GGGTGAACGACGTGG
GGAGCTAATGAGATCTATCCGCCTTTTGTTCAAAACTGAAATAATATTCCATGGTTAGGTGATTGATAGGCTTGCGAAGA
CTCA--GTGGAGATAGCGTGATTTAAAGTTGGATCATTTTCTCAACTTAACTCACCGCC---CTAAGAAGGAACAATCGT
CTCTTTTCCCCTCGGTCATACTGCTTGACTCCCATGGAGTTCAAGATTGAAGGGCTCT-GGGCTAGCCTTGGTACATCAA
GAAGGTGCTAACCAAAGATGACCTTCTTAAGAGCAATTACCCGCCACAGAATCAAGCCATTT-------CACTATGGTCC
CCAGCAAGGCGTAGACTTGATGGTGAATACTTTTAACATAAGTGTTCAAGGAGAAGCAGCACTCATGTG-----------
----CTCTT---GCATTCATGTCACGTACGTGCAATAGCTGTACTCATGTTCTCTTTGGCAGTTTGGCCTGATTTATTAG
CTACGTATATCCAGCATGA-------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------GCCAACAGTACTCATGTGTTGTTGCA------GATCTCGAGATCATTATGATGATAGAAAAG
TCGTCACTATGTATTAAAAACAGATGAGTGGTTGGAGAGATAGCCAATCAGCAAGCTGGGACTAAACTTGAAGACT--TG
TGAGACTAATTTGAAGCAAGGCTTGGCAGCGTTCTATGGATGCTATAAA--------------TACCCCTATC-------
-------CAAGAGAAAAGCTCTACACTTCATAGGTATCCTCAGTTGTTCTTCACCCCCAC---CCACC-----CCAAATG
GCCAATTTCAAGGTCACTGGTTATGCCGGGGCAC---TGGAAAACACTAAGCTTGACTTCCAAAGCTTGTATTTGCATAG
GATTAATTCTGGGGATAAGAAAAACCAGTATGTAGTGATAGATGGATTTGGTACTACTGACCTTGGTCTCACAACCATCA
ACGACTGGGCAATATATGATGGTGTGGCCCCGGACGCAAAGCTAGTCGCTCGTGCAAAAGGCATTCGTGTGAA------T
GCTGCTGACTGGTGCAATTTATTCATCATAGTGTTCGAGCTTGACAGGTAACTTGTCTGTGTTTTGTCCTGTAATGTGCT
AACATGTTACTCTTCTTTAGCTAGCATCACATTGTCTTGGTACATGCATATG--ATATTTGTGAATCACACAGTTTTAAA
GGATCCACGCTTTCTGTAATGGGAGCAACTGCTGAGGAACAAGGTGAATGGGCTATTGTTGGTGGGACTGGCGACTTCGC
TATGGCTCGTGGTGTCATCCAGAGAAAAATACATCAAAAGGTAGCAGAT------GGAGATGTATTAGAGCTTACTATCG
ATGCAGTCTGCCACAGGAAGGTGAGCGTTATATTCAATTTTGTATAGGTT-----------TTCCTCACTC-AAACTTTA
GATTTTACATACG----CATACATTTTGCAAA---TATC----GGATCACACAAACCTC--------TCTACCGGTATTC
CAAATCGTACAATT-TTTTT-GTTTCTGCTTTTATTTCTACTCTTACGAGCAAGTTGGATGTGCATTTCTCAAAGGAAAG
-AAACATTGCTGACAATGTTTCACTACTTGCAT----ATACAGGGGCAGCCTTCAC---------CCACTCCGCAGCCTC
CTGCCCCAAGCCAGCCGATTCAGCCTCCTGTTCAGCCGCGTCCTGCCCCCACTCCCATAAAATATGGACCATGGGGTGGA
ACTGGTGAAAAACTTTACCAGTTCAACCCAAACATGTCTGTACGCCTAAAGAGTATGACGGTCTTCCGTCATTATGCTGT
TAATGGACTTACTTTCACTTATATCGGCCAAGATGGCCAGGAACACGCCAGCGAACTTTTTGGTAATAGCGTTCTTCGTG
GCAACAAAGTTGACAGTGTGAGTTTTGTTCACTATTCGTTTCCTCATCCATTTGATCAATAATATGTTTCG---TCTTCT
TGTCCTTGTTCATTGAGATTCCAAAATTATGGCATCACTTATGGTTTGGTTTTGTCCATTTGGCAGCAAACATTTCAGCT
AGGCCCAACGGAGTTTCTGACGGGGCTGTCAGGAACATACGGCCATGAATCCAGATCAAACAATATTGCTATGTATTCCC
TTAAGCTGGTCACTAACCTCGGCAACACTCATGGACCTTTCGGAACTCCTGGGATAGGCACCCCTTTCAGCTTTTCCGTG
CCTCAGAACAACAGAATTGTGAGCTTCTTTGGGGGATCTACGGGTTACGCCATCAATTCAATTGGTATCTACACGCTCGA
CAATTCTGCTTAGCAAGCATGTTTTACTTGGTGCAGCTACAATTTTCGACTGTAGCAATAAGAGGGCTAGGGTTCTCCCT
AAACCAGCCTTGCTTTATTAGTTTTATTTTACACTTATATTTAAGATGGTAAGGATCTACCTACACCATGCCACAAGCAA
TTTATGGTTCCTGTACCTTTTTTTCTTCAAAAAGCTCGCCAGCTCCGTGGCATGTAAGGCTAGAATCATCAGAATAAAAG
AAGAGAAGACCTGATAAGATCCCATCGAGGACATGCTTATTTATGGTTAATCTCTTTAAGGTCCTTCTAATTTGTTGCAA
CCGAACTATCACCATGTTGATGCAATCTCATCCTTCAAATGTGACATGACAGGCAAAAAATTCAGTAACATGGTGTGCTT
AGTCATAACTTTATTTTTATCAAATACTTAGTCATAACTGATAAATAATTTGTA--------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GACAATGTTTATTAGCCCAAAGGCAAGATAT
ATAATGCATTTGGTGCGGACGCGCGTTGGTCAAATTGATCAGACATCCATCTGGCACACATAAAAACGAAACGTGAAATG
GAAGTGCCAGCGGTTAGTGTTCATCGCTCCATTGAATATTTGCAAGACTGGTGAGGTGGTGGCTGGGAGCTCAATGCCAT
GTCGCATGGTTATAGCACTCACCTAGCCGGTTCCATGCTTCAACCGCACCATTACTAGGAAACTGCTTATAGGTGTGGTC
AAATCCGTGGGGGTAGGCCCAGC-AACCCACCACTGCTAATCTGGCCTGATAATAGTGGCGTGTGGAAATGTTGGACCAC
CACTAGAATAACTTTATCAATGGCGAGCTCTTCCACGCACCTACCACTGGTAGTCCGGGCCCAGGTTAGCCATGGGTGAA
AATCACCCGTGGCCATTGCCACATATAAGCGCACAACTCGTAGTTAGAGGAACAGTGGCATGCCCGTCTAGACACCCACC
CATGGTAACATGCCTACTAATTTGACCCACCATAGCCCCAAGATACGTACTCCCTCCGATCCATATTAATTGTATAGTGG
AACCTTATACCAAATGAGTGAGAATTAATATTGGTGAGAGGTAGAAATTTTGGTTTTCTACATTTTTTAGATTTTACTGT
GTTATTTTTGTTTGACCATTGTAGTTTAAGAAAAATAGTTTGATTTTTCTAGGTTTCATTATTTGTAATATTTTAGACAT
TTTATTAATAAATTTGTCTTTAGTTGAATATAAA
>chr7B_173
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--------------------------------------------------------------------------------
------------CTAAGATGGTGGCTTCAGACTACGTGATGTACTATTTTATAAATTTTTGTGAATAATTAATAAAATGG
TAGTATGCATCGTTCAAATGCAGAGGCCAGGGTAATCCTCCTTTTTAAAACAAAAAAATTCACCAGGGTGAACAACGTGG
GGGACTAATGAGATCTATCTACCTTTTGTTCAAAACTGAA-TAATATTCCATGGTTAGGCGATTGATAGGCTTGCGAAGA
CTTAGTGTGGAGATAGCGTGATTTAAAATTGGATCATTTTCTCAACTTAACTCACCGCC---CTAAGAAGGAACAATCGT
TTCTTTTCCTCTCGGTCATGCTGCTCGACTCCCATGGAGTTCAAGAATGAACGGCTCTGGGGGTAGCCTTGGTACATCAA
GAAGGTGCTAACCAAAGATGACCTTCTTAAGACCAATTACCCACCACAGAATCAAGCCATCGCACTA-----TATGGTCC
TCAGCAAGGCGTAGACTTGATGGTGAATACTTTTAACAGAAGTGTTCAAGGACAAGCAGCACTCATGTG-----------
----CTCTT---GCATTCATGTCACGTACGTGCAATAGCTGTACCCATGTTCTCTTTGGCAGTTTGGCATGATGTATTAG
CTA----TATCCAGCATGCTAGTCATAGTGGGACTAAGGTCCTGTTTGGTTCATAAGTCCTAAGACTTTTTCTAGTCCCA
ACTAAAAAGTTCCTAGTCCCTAAAAAGTCCCTCCCTGTTTGTTTTCAGAGACTAAAAAGTCCCTAGTCCCTTCCTAGAGG
TTATTAAATGACCATGTTGCCCCTAGTATATAGAAAAATAACAATCAAACAACACCATAGGGGGGTGGGCCAATGAATGC
ATGGAGGGACATTGTTGGAAAAGTCCCAAAAAGTTCCAAAAAAGACTCTCTTCTTCATTTAGACCCAAATGCCTAGTTTA
GTCCCTAAAAAGTCCCTCCCGTTTGGTAAAAAAGTCTCTAAGATGGACTTTTTCTAGTCCCTACACAAAAAAGTCCCTGG
AAACAAACACCCCCTAACTTAGGTATAGTAACATAGCGCACTCCAATTATTTTTTTGCTTATATGGCATGTAGTTAATGA
GGAGAGAGATGTTTAGAGTAACATAATATGTTACTGTAACATAGCGTTTCCCGAGAAAGGACAAGTCTACAAGCTAATAA
ATGAACCCATCTATGACACTAGTACTATGTTGCTTTGTACTATGAAGATAGTAACTTACACTAGTGTCATATGCATGACA
CTAGTATAAGTTACTCCCGCCAACAGTACTCGTGTGTTGTTGCA------GATCTCGAGATCATTTTGATGATAGAAAAG
TCGTTATTATGTATTAAAAACAGATGAGTGGTCGGAGAGATAGCCAATCAGCAAGCTGGGACTAAACGTGAAGACTTGTG
TGAGACTAATTTGAAGCAAGGCTTGGCAGCGCTCTATGGATGCTATAAATAGGCCTCTTCAAGT--------------CA
CACAAGCCAAAAGAAAAGCTCTACACTCGATAGGTATCCCCAGCTGTTCTCTCACAC----------------CCCCATG
GCCAATTTCAAGGTCACTAGTCATTCGGGCGCACTGGTGGAAAACACTAAGCTTGACTTCCAAAGCTTGTATTTGCACAG
GTTCATTTCTGGGGATAAGAAAAACCAGTATGTAGTGATAGATGGATTTGGTAGTACTGACCTTGGTCTCACAACCATCA
ACAACTGGGCGATATATGATGGTGCGGCCTCGGATGCAAAGCTAGTCGCTCATGCAAAAGGCATGCGTATGAA------C
GCTGCTGACTGGTGCAATTTATTCATCATAGTGTTCGAGCTTGACAGGTAACTTGTGTGTGTTTTGTCCTGTAATGTGCT
AACATGTT-CTTTCTC----CTACTATCACATTCTCTTTGTAGAAGCATATGATATATTTGTGAATCACATAGGTTCAAA
GGATCCACGCTTTCTGTGATGGGGACAACCACTGAGGAACAAGGTGAATGGGCTATTGTTGGTGGGACAGGTGACTTCGC
TATGGCGCGTGGTGTCATCCATAGAAAAATACATCAAAAAGTAGCTGAT------GGAGATGTATTAGAGCTTACTATCG
ATGCATTCTGCCACAGGAAGGTGAGCGTTATATTCAATTTTGTATAGGTT-----------TTCCACAGTCAAAACTTTA
GATTTCACATACG----TATACATTTTGCAAATCCTATC----GGATCACACAAGCCTC--------TCTACCGGTATTC
CAAATCGAACAATTGTTTTT-GTTTCTTCTTTTATTTCTACACTTACGAGCAAGTTGGATGTACATTTCTCGAAGGAGAG
AAAT-ATTGCTGACAATGTTTCACTACTTGCATTCATATACAGGGGCAGCCTTCAC---------CCACTCCGCAGCCTC
CTGCCCCATGCCAGCCGATTCAGCCTCCTGTTCAGCCGCGTCCTGCCCCCACTCCCATAAAATATGGACCATGGGGCGGA
ACTGGTGAAAAACTTTACCAGTTCAACCCAAACATGTCTGTACGCCTAAAGAGTATGACAGTCTTCCGTCATTATGCTGT
TAATAGACTTACTTTCACTTATACCGGCCAAGATGGCCAGGAACACACCAGCGAACTTTTTGGTAATAGCGTTCTTCGTG
GCAACAAAGTTGACAATGTGAGTTTGGTTCACTATTCGTTTCCTCATCCATTTGATCAATAATATGTTTGGTCTTCTTCT
TGTCCTTGTTCATTGAGATTCCAAAATTATAGCATCACTTATGGTTTGGTTTTGTCCATTTGGCAGCAAACATTTCAGCT
CGGCCCAACGGAGTTTCTGACAGGGCTGTCAGGAACATACGGCCATGAATCCAGATCAAACAATATTGCTATGTATTCCC
TTAAGCTGGTCACCAACCTCGGCAACACTCATGGACCTTTCGGAACTCCTGCGATAGGCACCCCTTTCAGCTTTTCTGTG
CCTCAGAACAACAGAATTGTGAGCTTCTTTGGGGGATATACGGGTTACGCCATCAATTCAATTGGTATCTACACGCTCGA
CAATTCTGCTTAGCAAGCATGTTTTACTTGGTGCAGCTACAATTTTCGACTGTAGCAATAAGACGGTTAGGGTTCTCCCT
AAGCCAGCGTTGCTTTATTAGTTTTATTTTACACTTATATTTAAGATGGTAAAGATCTGCCTACCCCATGCCACAAGTAA
TTTATGGTTCCTGTACCTTTTTTTCTTCATAAAGCTCGCCAGCTCCGTGGCATGTAAGGCTAGAATCTTCAGAATAAAAG
AAGAGAAGACCTGATAAGATCCCATCGAGGACATGCTTATTTATGGTTAATCGCTTCAAGGTCCTTCTAGTTTCTTGCAA
CCGAACTATCACCTTGTTGATGCGATCTCATCCTTGACATGTCACATGACAGGCAAAAATTTCAGTAACATGGTGTGCTT
AGTCATAACTTTATTTTTATCAAATACTTAGTCATATCTGATAAATAATTTGTATGTTGAATATATGTGTTGCATGTATA
TGTGTATATCCTGGCCCACCTCCAAGTCTTTGTATAGTTGAGGTTGAGGCCCACATTGTACTCTTTATGTACGTGCATCC
GATCAATACGTCGTGAGTTGCATTGTCAAACTTCTGGTCTAACATTGTAGACAACGTTTATTAGCCCAAAGGCAAGATAT
ATAATGCATTTGGTGAGGACACGCGTTGGTCAAATTGATCAGACATCCAACTAGCACACATAAAAACGAAACATAAAATG
GAAGTGGCAGCGGTTAGTGTTCATCGCTCCATTGCATATTTGCAAGACATGTGAGGTGGTGGCTGGGAGCTCAATGCCAT
GTGGCATGGTTATAGCACTCGCCTAGCCG-----------------CACCACTACTAGGAAACTGCTAATAGGTGGGGTC
AAATCAGTGGCAGGTAGGCTCAGAAACCCACCACTGCTAATCTGGCCTGATAATAGTGGCGTGTGGAAATGTTCGACCGC
CACTAGAATAACTTTATCAGTGGTGGGCTCTTCCACGCACCTACCACCAATAGTCCGGGCCTAGGTTAGCCATGGGTGAA
AATCACCAGTGGCGATTGCCAC----------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------
>chr3B_350
AACCTTAAAC----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------AATACTCCATGGGTAGGCTATTGATAGGCTTGCGAAGA
TTAACCGGAGATCACTTGGGC--TAAAACTTGACCATTTTCTCCACCTGCCTCACAGCCCAGCTATGAAGGAACAGTCGT
CTCGGTTTCCCTTCGTCATCATGCTTGAGTCCCATGGAGTTCAAGAATGAAGGGT--TGGGGGTAGCCTTGGTACATGTA
GC--------ACCAAAGATAACCTTCTTCATACAAATTGCCGGCCATAGAATCAAGCCATCGCACCATCCACCATGGTCC
TCATTAAGGCGTAGACTTGACGGTGAATACTTTTAACGGAAGTGTTTATGGAGTAACAGCACTTTGTCATGATGTATTAG
GCATCTTTT---GCATCCATGTGACGTGCAAT-AATAGCTGTACTCATGTGCTGTTTGGTA--------TGATGTATTAG
GTG----TGTCGAGCATGATGGGCCTAGCTGTA-----------------------------------------------
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------------------------------CATGTTCTGTT----------ATCTCTACATCATTATGAAGATAAGCCAT
TATGTACTTA-----AAAAACAGATGAGTCGTTGGAGAGATAGCCAACCAACAAGCTGAGACTAAATGTAAAGACTTGTG
AA--ACTAATTTGAACCAAGACTTGGTAGCGTTCTGTCGATGCTATAAA--------------T--------------CA
CACAAGGCAAAAGAGAAGCTCTACACTTGATAGGTATCCTCAGTTGTCCTCACCCCCTCCACCCCCTCCTCCTCTCAATG
GACAATTTCAAGATCACTAGTTACGCCAATGCGCTGGTGGAAAACACTAAGCTTGACTTCCAAAGCTTGTATCTGCACAG
GATCAGGTCTGGGGATAAGAAAAACCAGTATGTAGTGATAGATGGAGTTGGTGCTACTGACATTTGTCTCACAACCATCA
ACGACTGGGCAATATATGATGGTGTGGCCGCGCATGCAAAGCTAGTTGCTCATGCAAAAGGCATGCATATGAATGCTGCC
GCTGCTGACTGCTGCAATTTATTCATCATAGTGTTCGAGCTTGACAGGTAACTTGTATGTGTTTTGTCTTGTAATGTGCT
AGCATGTTATC-TTTT----TTAGTATCACATTTTCTTGGTGTGTGCATCTG--ATATTTGTGAATCACATAGCTTCAAA
GGATCCACGCTTGCGGTAATGGGAGCAACTACTGAGGAACAAGGTGAATGGGCTATTGTTGGTGGGACTGGTCAGTTCGC
TATGGCGCGTGGTGTCATCCAGAGGAAAATGCATCAAAAATTAGCTGATGGACAAGGAGATGTATTAGAGCTTACTATCG
AGGCATTCTGCCGCAGGAAGGTGAACTTTCTATTCAATTTTTGTACAGATTTACTTGCAACTTCCACACTC-AGTCTTTA
GATTTTAGATACATACATACGTATTTTGCTAATCCTTATAGCTGGATCACGCAAACCTACCGGTAGATCTACCAGTATTC
CAAATTGTACA--T-TTTTT-GGTTCTGCTGTTATTTCTACTATTACGAACAAGTTGGATGTGCATTTCTCAAAGGAAAG
-AAT-ATTGCTGACAAAGTTTCACTACTTGCAT----A--CAGGGGCAGCCGGAGCCTCCGGCCACCACTCCGCAGACTC
CTACCAC---CCAGCCGATTCAGCCTCCTGTTCAGCCGCCTCCTGCCACCAC----------------------------
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>chr3D_614
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---------------------------------------------------------------------CACCATGGTCC
TCATCAAGGCGTAGACTTGACGGTGAATACTTTTAACGGAAGTGTTTATGGAGTAACAGCACTTTGTCAAGATGTATTAG
GCATCTTTT---GCATCCATGTGACGTGCAAT-AATAGCTGTACTCATGTGCTGTTTGGCA--------TGATGTATTAG
GTG----TCTCGAGCATGATGGGCCTAGCTGTA-----------------------------------------------
--------------------------------------------------------------------------------
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------------------------------CATGTTCTGTT----------ATCTCTACATCATTATGAAGATAAGCCAT
TATGTACTTA-----AAAAACAGATGAGTCGTTGGAGAGATAGCCAACCAACAAGCTGAGACTAAATGTAAAGACTTGTG
AA--ACTAATTGGAAGCAAGACTTGGTAGCGTTCTGTCGATGCTATAAA--------------T--------------CA
CACAAGGCAAAAGAGAAGCTCTACACTTGATAGGTATCCTCAGTTGTCCTCACCCCCTCCACCCGCTCCTCCTCCCAATG
GACAATTTCAAGATCACTAGTTACGCCAATGCGCTGGTGGAAAACACTAAGCTTGACTTCCAAAGCTTGTATCTGCACAG
GATCAGGTCTGGGGATAAGAAAAACCAGTATGTGGTGATAGATGGAGTTGGTGCTACTGACATTTGTCTCACAACCATCA
ACGACTGGGCAATATATGATGGTGCGGCCGTGGACGCAAAGCTAGTTGCTCATGCAAAAGGCATGCATATGAATGCTGCC
GCTGCTGACTGCTGCAATTTATTCATCATAGTGTTCGAGCTTGACAGGTAACTTGTATGTGTTTTGTCTTGTAATGTGCT
AGCATGTTATC-TTTT----TTAGTATCACATTTTCTTGGTGTGTGCATCTG--ATATTTGTGAATCACATAGCTTCAAA
GGATCCACGCTTGCAGTAATGGGAGCAACTACAGAGGAACAAGGTGAATGGGCTATTGTTGGTGGGACTGGTCAGTTCGC
TATGGCGCGTGGTGTCATCCAGAGGAAAATGCATCAAAAATTAGCTGATGGACAAGGAGATGTGTTAGAGCTTACTATCG
AGGCATTCTGCCGCAGGAAGGTGAGCGTTCTATTCAATTTTTGTACAGATTTACTTGCAACTTCCACACTC-AGTCTTTA
GATTTTAGATACATACATACATATTTTGCTAATCCTTATAGCTGGATCACGCAAACCTACCGGTAGATCTACCAGTATTC
CAAATTGTACA--T-TTTTTTGTTTCTGCTGTTATTTCTACTATTATGAACAAGTTGGATGTGCATTTCTCAAAGGAAAG
T-AT-ATTGCTGACAAAGTTTCACTACTTGCAT----A--CAGGGGCAGCCGGAGCCTCCGGCCACCACTCCGCAGACTC
CTACCAC---CCAGCCGATTCAGCCTCCTGTTCAGCCGCCTCTTGCCACCAC----------------------------
--------------------------------------------------------------------------------
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----------------------------------
>chr3D_621
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------------GTCC
TCAGTAAGGCGTAGACATGACGGTGAATACTTTTAAAAGAATCATTCAAGGAGTAGCAGCACTCATGTG-----------
----CTCTTATTGCATCCATGCCAT----GTGCAATAGCTGTACTCATGTGCTCTTTGGCA--------TGATGTATTAG
TTA----TCTCGAGCATGA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GCC-----TACTCATGTGCTGTTGCCATTGCCGATCTGTAGACCAGTATGAAGTCAGAATCA
TCGTCATTATATATTCTAAACAGAGAAGTCAATGGAGAGATAGCCAATCAACAAGCTGGGACTAATCGTAAAGACTTGAA
GCAAGACTTGGT--------ACTTGGTAGCTTTCTATGGATGCTATAAA--------------TACCCCTCGCCAAATCA
AACAAGGCAAAAGAAAAGCTGTCCTCT---------------------CTCACCCCCCCACCACCACC-----ACCAATG
GCCAATTTCAAGATCACTAGTTACGCCGGCGTACTGGTGGAAAACAGCAAGCTTGACTTCCAAAGCTTGTATTTGCGCAG
GATCATTTCTGGGGATAAGAAAAACCAGTATGTAGTGATAGATGGATTTGGTACTACTGACCTTGGTCTCACAACCATCA
ACGACTGGGCAATATATGATGGTGTGGCCCCTGGCGCAAAGCTAGTCGCTCGTGCAAAAGGCATGCGTATGAATGCTGCT
GG------CTGGTGCAATTTATTCATCATAGTGTTCGAGCTTGACAGGTAACTTGTATGTGTTTTGTCCTGTAATGTGCT
AACATGTTACATTTTT----TTAGCATCACATTGTCTTGGTACATGTATATG--ATATTTGTGAACCACATAGGTTCAAA
GGATCCACGCTTGAGGTAATGGGAGCAACTACTGATGAACAAGGGGAATGGGCTATTGTTGGTGGGACTGGTGACTTCAC
TATGGCGCGTGGTGTCATCCAGAGAAAAATACATCAAAAAGAAGCTGAT------GGAGATGTATTAGAGCTTACTATCG
ATGCATTCTGCCGCATGAAGGTGAG-------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------
>SNPs
SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-----------------------S----S---------S--S--SS----------------------
S-------------S-S---------------SS-SS--------S----S--SSSS-SSSS-----------S------
--SS---------------SS-------------------S------------------S--------------------
--S------------------------S----------------------------------------------------
-------------------S--------------------------S---------------S-----------------
--------------------------------S---------------------------SS------------------
S-------------------------------------S-----------------------------------------
--------------------------------------------------------------------S----S------
---SSSS-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
----------------------------------------------------------------------SS--------
----------S-----------------S---------------------SSS-----S----------------S----
------------------S----------S-----------------------------------------------S--
---S-S--------------------------------------------------------------------------
----------------------------------------------------------------S---S-----------
--------------------------------------------------------S-----------------------
-----------S--S-SSSS--------------------------------------------------S--S--S---
------------------------------S----------------------------------------S--------
------S--------------------------------S-----S----------------------------------
-----S-----------------------------------------------------------S--------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
---SS---------------------------------------------------------------------------
--------S-------------------------------------------------------------------S---
-----------------------------------------------------------S--------------------
----S------------------S----------------------S---------------------------------
---------------S---------S-------------------------------------------S----------
------------------------------S-------------------------------------------------
S--------------------S----------------------------------------------------------
-------------S-------------------------------------S------------------------S---
-------------------------------------S------------------------------------------
---------------------------------------------------------------S--S-------------
--S-----S-------------------------------------------S-----S-----S------------S--
-----------------------------S-------------------------------------S------------
----------------------------------------------------S---S------------S---S------
-------------S---------S-----------S-S----S----------------S--------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
---------------S----S----------------------------S--S-------------------S-S-----
------S---------------------------S-------------SS------------------------------
--S-----------------S--------SSSSSSSSSSSSSSSSS-----S---------------S-------S----
-----S----SS-SSS-S-SSSS--------------------------------------------------S----S-
-------------------S---S-S---------------------SSS-----------S------------------
-------S-----S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_543
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-------------------------------------------AAGATTGAAGGGCTCTGGGC-----------------
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----------------------------------
>reverse_2326
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GTCTGCCACAGGAAGGTGAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_621
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CGCCACAGAATCAAGCCATT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------
>reverse_3062
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GGGGCTGTCAGGAACATACG---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_1739
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CTCAGTTGTTCTTCACCCCCA---------------------
--------------------------------------------------------------------------------
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----------------------------------
>reverse_3172
--------------------------------------------------------------------------------
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---------------------------------------------------GGATAGGCACCCCTTTCAGC---------
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----------------------------------
>forward_2847
--------------------------------------------------------------------------------
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---------------------------CCAAGATGGCCAGGAACACG---------------------------------
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--------------------------------------------------------------------------------
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----------------------------------
>reverse_3993
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------GTGAAATG
GAAGTGCCAGCG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
