>input_sequence_44429
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-------------------------------------------------------------------ATGTCTACCAAGT
TGATAGCGCTCTACATTACAGTTTGCTCTGTTCTGTTTATCATATCCAAGATGCTCATCTCCTTCCTCTGCTACAAGAAG
TGGGCTCGCAAGAAGAGGATCATCGAGACCAGCCTGACAGGTAACAAGAGTTCTTCCCTCCCAAATGAGTTCTTGGATAT
CTTCTCTCTCTCTTTTTTTTCTCTTTTGGGAA-AAATAAATCGATGGATCACTCTTAAGGTGGCAAGCTGGTGATCTTCC
GGTCGGCGGCGATGCAGTCGCTGAGCCCCAAGGCCTTCATGAGGATGATCATGGGGCTGTCAAGCAAGGACATCATCGGC
TCCGGAGGGTACGGGACGGTGTACATGCTGAGGCTGGACGAGAAGTCGGCGTTCGCCATCAAGAAGCTGAGCAGGGGGAG
CGCGGAGATGGACCGCGGGTTCGAGCGGGAGCTGGACACCATGGGCGACATCAAGCACAGGAACATCGTCCCTCTCTGCG
GCTACTACGCGGCGCCTCACTTCAACCTGCTCATCTACGAGCTCATGCCCAACGGCAGCCTGGACACCATCCTCCACGGC
AAGGAGGAGAAGAAGCAGGCCCTCCTGGACTGGCCGGTGAGGTACAAGATCGCGCTGGGCGTGGCGCGGGGGCTGTCCTA
CCTCCACCACGACTGCATACCGCACGTCATCCACCGCGACATCAAGTCCAGCAACATACTCCTCGACCACAACATGGAGG
CCAGGGTGTCGGACTTCGGCCTCGCCACGCTCATGAAGCCCAACGAGAGCCACGTCACCACCGTCGTTGCCGGCACCTTC
GGCTACCTCGCCCCAGGTCCGCAGGCTGCCCATCAAAATCTCAATCTATATATTAACCTTGAGAATTGAGATCTACTCCG
TATATCATCATGCATGTGTGTTTGCTGATGGGTGGTGTGCTTGCTGCCTCAGAGTACTTCGAGACAGGGAGGGCCACGAC
CAAAGGCGATGTGTACAGCTACGGCGTCGTCTTGCTTGAGCTCCTCACGGGGAAGAGGCCGACGGACGAATCCTTCCTTG
AAAACGGCACACGGCTGGTGACCTGGGTAAGCATCCACCTCCCATTCCTCCTGTACTCACACCAATGACTCAATTAAAAT
CTGAATGATCGGTTGTGCAAGATTTGATGCGATGAGTAGAATTATTTGGCTTAAATCTCTAGAATGATCGTTGTATGCAG
TGACCAATTGATATGCTGCTGAAATAACCAACCAACCT------TAGCTATCAAC-------------------------
----------------------------------------------------------TACTTAGCAATCTGTACTCTGT
AGTTGTACCCATCAGAAAACTGATGGGCAGTGGCCGTCACCATGTCACCACGAGGTCCGCAATGGCCCAATGTACACCCA
ATCTCCCATGTCAAGATCAACGAGGACT-AGTGCATTACTAGCGCAGTACAGTGCTACC--TAACAGTAGCATGGTCTGA
TAATGGACATGTACCCTTTTTGTAGATGTGAAGTAAGGATGATGAATTAATTGGGCATGCATCCCCGGCCGTGTCAAGTG
CTGACATCAGTTCATCTGTTACTGTTTTCAGGTCAAGGAAACCATGGAGGAGAAGAGAGAGGAGCACGCCGTCGACGGCG
CTCTGGCGTCTTTTCCGGCGGAGGAAGTCAAGTTCGTGTTCACCATGGCGGAGAAGTGCCTGGAGTCTGATCCTCGCGAT
AGGCCAACCATGGTGCAAGTCGCCAAGATGCTTGAGCAAGCAAAGCTGGCATAG--------------------------
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>chr3B_1_TraesCS3B01G199100
TCCAGGTCAAGCACAGAGGCTGAGTATAAGGCTTTAGCCAATGCCACTGCAGAGATTATTTGGGTTCAGAATCTGCTGAC
AGAATTGGGTGTTTATCATCCAAAGGCTGCGTCACTTTGGTGTGACAATCTTGGTGCCACATATTTATCTGCTAATCCTA
TTTTCCATGCCAGGACTAAGCATATTGAAATAGATTATCATTTTGTTCGTGAAAGGGTGGCAGATAAGTTGTTGAATATT
AGGTTCATACCTACTGAAGATCAAGTTGCAGATGGATTCACTAAGCCTCTTACTCTTAAGCAGCTTGAGGCCTTTAGACG
CAATCTCAACTTGGATAGTTGTGATTGAGGGGGAGTGTTAAACATTGTA-TTTGC-GTATATACACGGTGTATGTATAAA
CCGTGTATATTACGTCATATGTGTACGTGCGTGTGTATCAAGTCAGGTTGTTGGGCATGTAGGATCGATCTCCTC--TCG
TTGTAGTTATCCTGTAGATAATGAGATCGATCCTAACCTCCTGTAACCTCCTGCGCATTTTATACCTGTTGCCCTACTTA
ACACGAG-----GTACGCGTCCCTGCCGCAT-TGGCATACGCTTAATCCTCTTTTCACAAGAATTGATTGGGGATAGGCA
TTTGGGACGGCACCAATCAAAAAGTTGTTGTGCTCGGGTCTGCCATTCACATGATCCAACCAGGCCCATTGATTGGGCAA
TGTACCTTTTCTCCGGATCCCCCACCCAGCTGCTCACTCATCGAGACACCTGTGCTGTGCCTGTGCTCACATTGTC-ACA
TGTGTACAATCGTCAACAAATCCAAAGCATCCTCCCAGTCGCCGAATCCAAAACATATTTAGCGTTCGCCTCTGTTTCTT
CCTAAGCTCAGAGATCCAAAGCATCCT-------------CCTTCTTCTGGGTA---AGTAAGCTGGGGATTCCTCCTTT
CTTGACTGATGCTGCACTGAGGATCTTACAGGGATTCATCTGTTTCTTGTTCAGGGTAAATTGGAAGATGTCTACCAAGT
TGATAGCGCTCTACATTACAGTTTGCTCTGTTCTGTTTATCATATCCAAGATGCTCATCTCCTTCCTCTGCTACAAGAAG
TGGGCTCGCAAGAAGAGGATCATCGAGACCAGCCTGACAGGTAACAAGAGTTCTTCCCTCCCAAATGAGTTCTTGGATAT
CTTCTCTCTCTCTTTTTTTTCTCTTTTGGGAA-AAATAAATCGATGGATCACTCTTAAGGTGGCAAGCTGGTGATCTTCC
GGTCGGCGGCGATGCAGTCGCTGAGCCCCAAGGCCTTCATGAGGATGATCATGGGGCTGTCAAGCAAGGACATCATCGGC
TCCGGAGGGTACGGGACGGTGTACATGCTGAGGCTGGACGAGAAGTCGGCGTTCGCCATCAAGAAGCTGAGCAGGGGGAG
CGCGGAGATGGACCGCGGGTTCGAGCGGGAGCTGGACACCATGGGCGACATCAAGCACAGGAACATCGTCCCTCTCTGCG
GCTACTACGCGGCGCCTCACTTCAACCTGCTCATCTACGAGCTCATGCCCAACGGCAGCCTGGACACCATCCTCCACGGC
AAGGAGGAGAAGAAGCAGGCCCTCCTGGACTGGCCGGTGAGGTACAAGATCGCGCTGGGCGTGGCGCGGGGGCTGTCCTA
CCTCCACCACGACTGCATACCGCACGTCATCCACCGCGACATCAAGTCCAGCAACATACTCCTCGACCACAACATGGAGG
CCAGGGTGTCGGACTTCGGCCTCGCCACGCTCATGAAGCCCAACGAGAGCCACGTCACCACCGTCGTTGCCGGCACCTTC
GGCTACCTCGCCCCAGGTCCGCAGGCTGCCCATCAAAATCTCAATCTATATATTAACCTTGAGAATTGAGATCTACTCCG
TATATCATCATGCATGTGTGTTTGCTGATGGGTGGTGTGCTTGCTGCCTCAGAGTACTTCGAGACAGGGAGGGCCACGAC
CAAAGGCGATGTGTACAGCTACGGCGTCGTCTTGCTTGAGCTCCTCACGGGGAAGAGGCCGACGGACGAATCCTTCCTTG
AAAACGGCACACGGCTGGTGACCTGGGTAAGCATCCACCTCCCATTCCTCCTGTACTCACACCAATGACTCAATTAAAAT
CTGAATGATCGGTTGTGCAAGATTTGATGCGATGAGTAGAATTATTTGGCTTAAATCTCTAGAATGATCGTTGTATGCAG
TGACCAATTGATATGCTGCTGAAATAACCAACCAACCT------TAGCTATCAAC-------------------------
----------------------------------------------------------TACTTAGCAATCTGTACTCTGT
AGTTGTACCCATCAGAAAACTGATGGGCAGTGGCCGTCACCATGTCACCACGAGGTCCGCAATGGCCCAATGTACACCCA
ATCTCCCATGTCAAGATCAACGAGGACT-AGTGCATTACTAGCGCAGTACAGTGCTACC--TAACAGTAGCATGGTCTGA
TAATGGACATGTACCCTTTTTGTAGATGTGAAGTAAGGATGATGAATTAATTGGGCATGCATCCCCGGCCGTGTCAAGTG
CTGACATCAGTTCATCTGTTACTGTTTTCAGGTCAAGGAAACCATGGAGGAGAAGAGAGAGGAGCACGCCGTCGACGGCG
CTCTGGCGTCTTTTCCGGCGGAGGAAGTCAAGTTCGTGTTCACCATGGCGGAGAAGTGCCTGGAGTCTGATCCTCGCGAT
AGGCCAACCATGGTGCAAGTCGCCAAGATGCTTGAGCAAGCAAAGCTGGCATAGTACAGGCTCATTAACGCGCAGTATGT
GTAACTAGGTGCTTAATTGGTTGCAGACAATTTTTCCACCCAAGGTGTTGCTTTTGCGAAATTCATGCTGGGTTCTGCAC
AAAATTTAGAAGATTTTTGTCGGCAAACGCTACCAATAGTGTTGTATAAGAAGCAAAATTTATTGTTTGGGTTTGTAATT
GAATTTGTACAAACAATTTTATACTTATCATCCAATACTGCTGGGTAGACATAGGTTCAGTGCATCCAAGTAAGAATCAT
GATGTAAGGAAACTTGATGACCTCT--AGTTGTACCATATAAATTATTTTGGAAAATGAGAGTATCCATGACAACTTTGT
GCATTGTGAGGACCCAA-GGAGGATCTCACAGGAATTTGAGAGAGAA-AGGGACGAACGGGAAGAGATTGCAGAGAAAGG
GGAGAGAAACAGAGCACAAGGGGAGAGATAGATTCAGACGTTTCTATTCTTCAGAGTTGTCCGGTTCCTTACACATTAGT
GGTATATAAACCCACG----CACGCCACGCCCTACACACAGTACA-GCTAGGCCCACTGCCAGTCACACATTCTTGTCAT
CCACCTGTCCAGTGGACCCAGGGTCCCCCTGTCGGTTGTCCGGCGACGTCGTTAGAGATGGAGCCGTGACATTCTCCC--
--TTGAGTTTGATCCTCCTCCCAAATTGCAGCTGACGAAAAACGAGCGCGCAACACATAATAATCTTCCCAGGTTGCATG
ATCAGCGGCGATACCGTGCCATTGAACTTTGATCTGTGGAATAGCATTGTTTCCCTTCTTTGCCATACGTCGATCCAGCA
CAACCTCTGGTTGGAGAGTGACAACCAATAAATCAGGTGGGTCTGGTAGCTCCTGAAACACTGGAGAGTAGTTGGCAGTG
AAGGGTTTTAGCTGGGAAACGTGAAACACTGGATGGATCAGACTTATATCAGGAAAATCCAGACGATAAGCGGCAGCACC
CAGCCGAGCAGTAACTCTGAATGGCCC-----------------------------------------------------
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>chr5A_5
----GGTCCAGTACAGAAGTTGAGTACATGGCATTAGCCAATGCTACTGCTGAAATTATTTGGGTCCAAAATTTGCTGAC
AGAACTGGGTGTTCATCATCCAAAAGCTGCATCACTTTGGTGTGATAATCTTGGTGCCACATATCTATCTGCTAATCCTA
TATTTCATGTCAGGACAAAACATATTGAAATTGACTATCATTTTGTTCGTGAATGGGTGGCTGAAAAGTTGTTGAATATA
AGGTTTATACCCACTGGTGATCAAGTTGCAGACGGATTCACTAAGCCACTTACTTTTCACCAGCTGAAGGCATTCAGACA
CAATCTCAACTTGGATAATTGTGATTAAGGGGGAGTGTTAAACATTGTACTTTGC-GTATATACACGGTGTATGTATAAA
CCATGTATATCACGCCATATGTGTGCGTGCGTGTGTATCAAGTCAGGCTGTTGGGGCGGTAGGATCGATCTCCTC--TCC
TTGTAGTTATCCTGTAGATAATGAGATCGATCCTAACCTCCTCTAACCTCCTGCGCCTTGTAT-----------------
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>chr5A_5
----GGTCCAGTACAGAAGCTGAGTACAAGGCATTAGCCAATGCTACTTCTGAAATTATTTGGGTCCAAAATTTGCTGAC
AGAGCTGGGTGTTCATCACCCAAAAGCTGCATTGCTTTGGTGTGATAATCTTGGTGCCACATACCTATCCGCCAATCCTA
TATTTCATGCCAGGATAAAACATATTGAAATTGACTATCATTTTGTTCGTGAACGGGTGGCTGAAAAATTGTTGAATATA
AGGTTTATACCCACTGGTGATCAAGTTGCAGACGGATTCACTAAGCCACTTACTTTGCACCAGCTGAAGGCATTCAGGTG
CAATCTCAACTTGGATAGTTGTGATTGAGGGGGAGTGTTAAACATTGTA-TTCTGTGTATATACACGATGTATGTATAAA
CCGTGTATATCACGTCGTATGTGTGCGTGCGTGTGTATCACGTCAGGTGGTTGGGCTGGTAGGATCGATCTCCCTCC-TG
TTGTAGTTATCTTGTAGATAATGAGATCGATCCTAACCTCCTCTAACCTCCTGTGCCTTGTAATCTCTTCGGCCTAGCGC
CCTATTTAACATGTACGCGTCCCTGCCTAAGCTGGCATACGCTTAACCTAGTTCTTCACAAAAA----------------
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>chr1B_5
----GGTCCAGTACAGAAGCTGAGTACAAGGCATTAGCCAATGCTACTGCTGAAATTATTTGGGTCCAACATTTGCTGAC
AGAACTGGGTGTTCATCATCCAAAAGCTGCATCGCTCTGGTGTGATAATCTTGGTGCCACATACCTATTTGCTAATCCTA
TATTTCATGCCAGGACAAAATATATTGAAATTGACTATCATTTTGTTCGTGAACGGGTGGCTGAAAAATTGTTGAATATA
AGGTTTATACCCACTGGTGATCAAGTTGAGGATGGATTCACTAAGCCACTTACTTTGCAATAGCTGAAGGCATTCAGG-G
CAATCTCAACTTAGATAGTTGTGATTGAGGGGGAGTGTTAAACATTGTA-TTCTGTGTATATACGCGGTGTACGTATAAA
CCACGTATATCACGTTG--TGTGTGCGTGCGTGTGTATCACGTTAGGAAGTTGGGTCGGTAGGATCGATCTCATATGTCA
TTGTAGCTATCCTGTAGATAA-GAGATCGATCCTAACCTCCTCTAACTCCTGTG--CTTGTAATCTCCTGTGCCTATA--
-----TTAACACGTACGCGTCCCTGCTATGCCA-GCATACGCTTAACCTAATTCTCACAAAGAA----------------
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>chr4B_13
------------ACAGAAGCTGAGTACAAGGCATTAGCCAATGCTACTGCTGAAATTATTTGGGTCCAACATTTGCTAAC
AGAGTTGGGTGTTCATCATCCAAAAGCTGCATCACTCTGGTGTGATAATCTTGGTGCCACATACCTATCTGCTAATCCTA
TATTTCATGCCAGGACAAAACATATTGAAATTGACTATCATTTTGTTCGTGAACGGG---CTGAAAAATTGTTGAATATA
AGGTTTATACCCACTGGTGATCAAGTTGCAGACGCATTCACTAAGCCACTTACTTTGCACCAGCTGAAGGCATTCAGGCG
CAATCTCAACTTAGATAGTTGTGATTGAGGGGGAGTGTTAAATATTGTA-TTCTGTGTATATACACAGTGTACGTATAAA
CCGTGTATATCACGTTG--TGTG--CGTGCGTGTGTATCACGTTAGGTGGTTGGGCTGGTAGGATCGACCTTCTATGTTG
TTGTAGTTATCCTGTAGATAACGAGATCGATCTTAACCTCCTCTAATCTCCTATGTCTTGTAATCTCTTTGGTCTAGCAC
CTTATTTAATACGTACGCGTTCCTGCCTAAGCTGGCATACGCTTAACCTAGTTTTCACAA--------------------
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>chr4B_13
------------ACAGAAGCTGAGTACAAGGCATTAGCCAATGCTACTGCTGAAATTATTTGGGTCCAACATTTGCTAAC
AGAGTTGGGTGTTCATCATCCAAAAGCTGCATCACTCTGGTGTGATAATCTTGGTGCCACATACCTATCTGCTAATCCTA
TATTTCATGCCAGGACAAAACATATTGAAATTGACTATCATTTTGTTCGTGAACGGG---CTGAAAAATTGTTGAATATA
AGGTTTATACCCACTGGTGATCAAGTTGCAGACGCATTCACTAAGCCACTTACTTTGCACCAGCTGAAGGCATTCAGGCG
CAATCTCAACTTAGATAGTTGTGATTGAGGGGGAGTGTTAAATATTGTA-TTCTGTGTATATACACAGTGTACGTATAAA
CCATGTATATCACGTTG--TGTG--CGTGCGTGTGTATCACGTTAGGTGGTTGGGCTGGTAGGATCGACCTTCTATGTTG
TTGTAGTTATCCTGTAGATAACGAGATCGATCTTAACCTCCTCTAATCTCCTATGTCTTGTAATCTCTTTGGCCTAGCAC
CTTATTTAACACGTACGCGTTCCTGCCTAAGCTGGCATACGCTTAACCTAGTTTTCACAA--------------------
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>chr3A_610
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-----------------------------------------------------------AGAATTGATTGGGGATATGGA
TTTGGCACGGCATCAATCAAAAAGTAGTTGTGCTTGGGTCTGCCATTCACATGATCCAGCCAGGCCCATTGATTGGCCAA
TGCACCTTTTCTCCGGATCCCCCACCCAGCTGCTCACTCATCGAGACACCTGTGCTGTCCCTGCGCTCACATTGTC-ACA
TGTGTACAATCGTCAACAAATCCAAAGCATCCTCCGACTCGCCGATTCCAAAACATATTCAGCGTTCGCCTCTGTTTCTT
CCTAAGCTCAGAGATCCTCAT---ACGGTTGCTTCTGTTGCCTTCTTCTCGGTAAGTAGTAAGCTGGGGATTCCTCCTTT
CTTGACTGATGCTGAACTGAGGATCTTACAGGGATTCATCTGTCTCTTGTTCAGGGTAAATTGGAAGATGTCTACCAAGT
TGATAGCGCTCTACATTACAGTTTGCTCTGTTCTGTTCATCATATCCAAGATGCTCATCTCCTTCCTGTGCTACAAGAAG
TGGGCTCGCAAGAAGAGGATCATCGAGACCAGCCTCACAGGTAACATGAGTTCTTCCCTCCCAAATGAGTTCATGGATAC
CTTCTTCC-------TTTTTCTCTTTTGGGAAGAAATAAATCGATGGATCACTCTTAAGGTGGCAAGCTGGTGATCTTCC
GGTCGGCGGCGATGCAGTCGCTGAGCCCCAAGGCGTTCATGAGGATGATCATGGGGCTGTCGAGCAAGGACATCATCGGC
TCCGGGGGGTACGGGACGGTGTACATGCTTCGGCTGGACGAGAAGTCGGCGTTCGCCATCAAGAAGCTGAGCAGGGGGAG
CGCGGAGATGGACCGCGGGTTCGAGCGGGAGCTGGACACCATGGGCGACATCAAGCACAGGAACATCGTCCCTCTGTGCG
GCTACTACGCGGCGCCTCACTTCAACCTGCTCATCTACGAGCTCATGCCCAACGGCAGCCTGGACACCATCCTCCACGGC
AAGGAGGAGAAGAAGCAGGCCCTCCTGGACTGGCCGGTGAGGTACAAGATCGCGCTGGGCGTGGCGCGGGGGCTGTCCTA
CCTCCACCACGACTGCATACCGCACGTCATCCACCGCGACATCAAGTCCAGCAACATACTCCTCGACCACAACATGGAGG
CCAGGGTGTCGGACTTCGGCCTCGCCACGCTCATGAAGCCCAACGAGAGCCACGTCACCACCGTCGTCGCCGGCACCTTC
GGCTACCTCGCCCCAGGTCCGCAGGCTGCCCGTCGAAATCTCAATTTGTATATTAACCTTGAGATAC-------------
---ATCATCATGCATGTGTGTTTGCTGATCGGTGGTGTGCTTGTTGCTTCAGAGTACTTCGAGACAGGGAGGGCGACGAC
CAAAGGCGATGTGTACAGCTACGGCGTCGTCTTGCTTGAGCTCCTCACGGGGAAGAGGCCGACAGACGAATCGTTCCTTG
AAAACGGCACACGGCTGGTGACCTGGGTAAGCATCCACCTCTCATGCCTCCTGTACTCACACCACTGACTCGGTTAAATT
CCGAATGATCGGTTGTGCAAGATACGATGCCCTGAGTAGAATAATTTGGCTTGAATCTCTAGAATGGTCGTTATATGCAA
TGACCAATGGATATGTTGCTGAAATAACAAATAACCAACCAACCTAGCTAGCTATCAA----------------------
----------------------------------------------------------TACTTAGCAATCTGTACTCTGT
AGTTGTACCCACCAGAAAACTGATGGGCTGTGGCCGTCACCATGTCACCACGAGGTCC--------CCAATGTACT-CCC
ATCTTCCGTGTCAAGATCAACGAGGACGGAGTACATTACTAGCGCAGTACAGTAGTATACGTAACAGTAGTATGGTCTGA
TAATGGACATGTACCCTTTCTGTAGATGTGAAGTAAAGATGACGAATTAATTGGGCATGCATCCCCGGCCGTGTCAAGTG
CCGACATCAGTTCATCTGTTACTGTTTTCAGGTCAAGGAAACCATGGAGGAGAAGAGAGAGGAGCACGCCGTCGACGGCG
CTCTGGCGTCTTTTCCGGCGGAGGAAGTCAAGTTCGTGTTCACGGTGGCGGAGAAGTGCCTGGAGTCTGATCCCCGCGAT
AGGCCAACCATGGTGCAAGTCGCCAAGATGCTTGAGCAGGCGAAGCTGGCATAGTACAGGCTAATTAACGCGCAGTATGT
GTAACTAGGTGCTTAATTGGTTGCAGACAATTTTTCCACCCAAGGTGTTGCTTTTGCGAAATTCATGCTGGGTTCTGCAC
AAAATTTAGAAGATTTTTGTCGGCAAACGCTACCAATGGTGTTGTATAAGAAGCAAAATTTATTGTTTGCGTTTGTAATT
GAATTTGTACAAACAATTTTATACTTATGATCCAATACTGCTGGGTAGACATAGGTTCAGTGCATCCAAGTAAGAATCAT
GATTGTA-------------------------------------------------------------------------
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>chr3D_610
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-----------------------------------------------------------AGAATTAATTGGGGATAGGCA
TTTGGCACGGCACCAATCAAAAAGTAGTTGTGCATGGGTCTGCCATTCACATGATCCAACCAAGCCCATTGATTGGGCAA
TGTACCTTTTCTCCGGATCCCCCACCCAGCTGCTCACTCATCGAGACACCTGTGCTGTGCCTGTGCTCACATTGTCAACA
TGAGTACAATCGCCAACAAATCCAAAGCATCCTCCCACTCGCCGATTCCAAAACATATTTAGCGTTCGTCTCTGTTTCTC
CCAGAGCTGAGAGATCCCCATACGACGGTTGCTTCTGTTGCCTTCTTCTGGGTA---AGTAAGCTGGGGATTCCTCCTTT
CTTGACTGATGCTGCACTGAGGATCTTACAGGGATTCATCTGTTTCTTGTTCAGGGTAAATTGGAAGATGTCTACCAAGT
TGATAGCGCTCTACATTACAGTTTGCTCTGTTCTGTTCATCATATCCAAGATGCTCATCTCCTTCCTCTGCTACAAGAAG
TGGGCTCGCAAGAAGAGGATCATCGAGACCAGCCTGACAGGTAACAAGAGTTTTCCCCTCACAAATGAGTTCTTGGATAT
CTTCT--CTCTCTTTTTTTTCTCTTTTGGGAAGAAATAAATCGATGGATCACTCTTAAGGTGGCAAGCTGGTGATCTTCC
GGTCGGCGGCGATGCAGTCGCTGAGCCCCAAGGCGTTCATGAGGATGATCATGGGGCTGTCGAGCAAGGACATCATCGGC
TCCGGTGGGTACGGGACGGTGTACCTGCTGCGGCTGGACGAGAAGTCGGCGTTCGCCATCAAGAAGCTGAGCAGGGGGAG
CGCGGAGATGGACCGCGGGTTCGAGCGGGAGCTGGACACCATGGGCGACATCAAGCACAGGAACATCGTCCCTCTCTGCG
GCTACTACGCGGCGCCTCACTTCAACCTGCTCATCTACGAGCTCATGCCCAACGGCAGCCTGGACACCATCCTCCACGGC
AAGGAGGAGAAGAAGCAGGCCCTCCTGGACTGGCCGGTGAGGTACAAGATCGCGCTGGGCGTGGCGCGGGGGCTGTCCTA
CCTCCACCACGACTGCATACCGCACGTCATCCACCGCGACATCAAGTCCAGCAACATACTCCTCGACCACAACATGGAAG
CCAGGGTGTCGGACTTCGGCCTCGCCACGCTCATGAAGCCCAACGAGAGCCACGTCACCACCGTCGTCGCCGGCACCTTT
GGCTACCTCGCCCCAGGTCCGCAGGCTGCCCAACGAAATCTCAATCTATGTATTAACCTTGAGATAC-------------
---ATCATCATGCATGTGTGTTCGCTGATCGGTGGTGTGGTTGTTGCTTCAGAGTACTTCGAGACAGGGAGGGCGACGAC
CAAAGGCGATGTGTACAGCTACGGCGTCGTCTTGCTTGAGCTCCTCACGGGGAAGAGGCCGACGGACGAATCCTTCCTTG
AAAACGGCACACGGCTGGTGACCTGGGTAAGCATCCACCTCTCATTCCTCCCGTACTCACACCAGTGACTCAATTAAAAT
CTGAATGATCGGTTGTGCAAGATTTGATGCGATGAGTAGAATAATTTGGCTTAAATCTCTAGAATGATCGTTGTATGCAG
TGACCAATTGATATGTTGCTGAAATAACC---------CCAACCTAGCTATCAACTACTCCCTCTGTAAACTAATATAAG
AGCGTTTAGATCACTACTTTAGTATTCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACTTAGCAATCTGTACTCCGT
AGTTGTACCCATCAGAAAACTGATGGGCAGTGGCCGTCACCATGTCACCACGAGGTCC--------CCAATGTACTCCCA
TCTTCCATGTC--AGATCAACGAGGACT-AGTACATTACTAGCGCAGTACAGTAGTAT---------------GGTCTGA
TAATGGACATGTACCTTTTTTGTAGATGTGAAGTAAGGATGACGAATTAATTGGGCATGCATCCCCGGCCGTGTCAAGTG
CTGACATCAGTTCATCTGTTGCTGTTTTCAGGTCAAGGAAACCATGGAGGAGAAGAGAGAGGAGCACGCCGTCGACGACG
CTCTGGCGTCTTTTCCGGCGGAGGAGGTCAAGTTCGTGTTCACCGTGGCGGAGAAGTGCCTGGAGTCTGATCCCCGCGAT
AGGCCAACCATGGTGCAAGTCGCCAAGATGCTTGAGCAAGCCAAGCTGGCATAGTACAGGCTAATTAACGCGCAGTATGT
GTAACTAGGTGCTTAATTGGTTGCAGACAATTTTTCCACCCAAGGTGCTGCTTTTGCGAAATTCATGCTGGGTTCTGCAC
AAAGTTTAGAAGATTTTTGTCGGCAAACGCTACCAATGGTGTTGTATAAGAAACAAAATTTATTGTTCGGATTTGTAATT
GAATTTGTACAAACAATTTTATACTTATGATCCAATACTGCTGGGTAGACATAGGTTTAGTGCATCCAAGTAAGAATCAT
GATGTAAGGAAACTTGATGACCTCTCTAGCTGTACCATATAAATTATTTTGGAAAATGAGAGTATCCATGACAACTTTGT
GCATGTG-------------------------------------------------------------------------
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>chr5B_3083
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----TGTGAGGCCCCGGTGGTGGATCTCACAGGAATTCGAGAGAGAGGAGGGACGAACAGAGAG-GATTGCAGAGAATGA
GGACAGAAACGGAGCAACA-GGGAGAGATAGGTTCAGACTTGTCT-TTCTTCATATAACTC--GTTCCCTAGACAGCAGA
CGTATATATACCCACACACAC--GCCACGGCTTACACCTACTACATGCTAGGCCCACTGCCGGTCACACATTGGTGTCGC
CCGCTTGCCGAGTGGACCCGGGGTCCACCTGTCGGTTGTCCGGCGACGTTGTAAAGGATGGAGCCGTGACATTCTCCCCT
CCTTGAGCTTGAGCCTCCTCCCAAATTGCAGGGTGGG--AAACGAGCGCGCAACACATAATAATCTTCCCAGGTTGCATG
ATCTACAGTGACACTGTGCCACTGAACTTTGATTTACAGAATGGCGTTGCTGCCCTTCTTCACCATGCGACGATCCAGAA
TAGCCTCTGGTTGGAGAGTGACAACCGATAAATCAGGTGGGTCTGGCAGCTCCTGAAACACTGAAGAGTAGTTGGCAGTG
AAAGGTTTCAGCTGCGACACGTGAAACACGGGATGGATCAGACTAGTATTAGGGAGATCCAAACGATAAGCAGCAGCACC
CAGCCGAGCAGTAACTCGGAATGGCCC-----------------------------------------------------
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>chr5D_3083
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----TGTGAGGCCCCAGTGGTGGACCTCACAGGAATTCGAGAGAGAGGAGGGACGAACAGAGAG-GATTGCAGAGAATGA
GGAGAGAAACGGAGCAACA-GGGAGAGATAGGTTCCGACTTGTCT-TTCTTCAGATAACTC--GTTCCCTACACAGCAGA
GGTATATATACCCACCCACACACGCCATGGCTTACACCTACTACATGCTAGGCCCACTGCCAGTCACACATTGGTGTTGC
CCGCCTGCCGAGTGGACCCGGGGTCCATCTGTCGGTTGTCCGGCGACGTTGTAAAGGATGGAGCCGTGACATTCTCCCCT
CCTTGAGCTTGAGCCTCCTCCCAAATTGCAACGGACGGAAAACGAGTGCGCAACACATAATAATCTTCCCAGGTTGCATG
ATCTGCAGTGACACCGTGCCATTGAACTTTGATCTGCGGAATGGCATTGTTTCCCTTCTTCACCATGCAATGATCCAGAA
TAGCCTCTGGTTGGAGAGTGACAGCCGATAAATCAGGTGGGTCTGGAAGCTCCTGAAACACTCGAGAGTAGTTGGC----
---------AGCTGCGACACATGAAACACGGGATGGATCAAACTAGTATAAGGGAGATCCAAACGAAAAGCAGCAGCACC
CAGCCAAGCAGTAACTCGGAATGGCCC-----------------------------------------------------
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>chr3B_3085
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------TGAGGACCCAA-GGAGGATCTCACAGGAATTTGAGAGAGAA-AGGGACGAACAGAAAGAGATTGCAGAGAAAGG
GGAGAGAAACACATCACAA-GGGAGAGATTGATTCAGACGCTTCTATTCTTCAAA-------------------------
--------------------------------------------------------------------------------
----------------------------------GTTGTCCGGTTTCTTACAC---------------------------
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------------------------------------------------------------------AGTAGTTGGCAGTG
AAGGGTTTTAGTTGCGAAACGTGAAACACAGGATGAATCGGACTTGTATCGGGCAAATCCAGACGATAAGCAGCAACACC
CAGCCGTGCAGTAACTCTGAATTGCCCAAAATATTTGAGACCTAACTTGCGGCATGGAAGATTGACCAAGGATGATTGTG
CATAGGGCTGTAACTTGAGTAAAACCTCCTCACTCACTGCAAACTCTCGATCTTGACGATGTTTATCTGCTTGCGACTTG
ATTCGTTGTTGAGCACGCAGTAAATTCTCACGCAACATAGCCAAAAAATCCTCACGATCGGCTGCCAATTCCGCAAGACA
TGTAGGAAGATCACCAACATCAATTGGCATAGTACCAAAATTAAGATCCATACCATACAGAGTCTTGAACGGGGTGTTCC
TGAGTGAGGTGTGATACGAGGAATTGTACCAAAATTCAGCCATTGGTAACCAGCGCTTCCATCGAGCTGGACTGTCATGA
ACAACACACCGGAGATACTGCTCTAAGCGTTGGTTTACACGCTCCGATTGGCCATCCGTTTGTGGGTGGTAGGTTGTAGA
GTAACAGAGTTTAGTGCCAATTTCCGTGAACAATTTCTTCCAGAAACTGCTAGTAAAAACTTTATCACGATCGGAGACAA
TGGAGGCCGGCACGCCATGAAGACGAACAATAGTATCAACGCACAGTTGCCATAGACTGTGATGTATGCGGATGTTTCAG
AGGAAGGAAATGGGCGTACTTGGTAAAATGATCGACCACCACCAAAATCACCTCAACTCCCTTTGACTTGGGTAACCCAT
CAATGAAATTCATGGTTATGCATTTCCATGGGTGGTCAGGAACTGGGAGGGGTTGAAGCAGACCACTAGGTACTGTTCTT
TCATGTTTTGCCTGCTGACAAACTTGGCATTTCATTCATTATCAAAAATAGAGTCGCATTGTTAAAAGCACAGAATGGCT
ACTAACCAATGCATGAAAGAGTTTGAGTGTTAAACAATTAAATAAGAGAAACTTAGCTACAAAATCTAAACACCTATCAT
TGAAAGATTAGTTGCTAAGATTTTTAATGAACTTAAACACCTCATTTAAGCATCAATGCATTGGAAGAGGACTACAGGAA
GCCGTCCATGGTTTTGAGGACCCAAGGAGGATCTCACAGGAATTTGAGAGAGAAAGGGACGAACAGAAAGAGATTGCAGA
GAAAGGGGAGAGAAACATATCACAAGGGAGAGATTGATTCAGACGCTTCTATTCTTCAAAGTTGTCCGGTTTCTTACACA
GTAGT
>SNPs
SSSS----S--S-----S--------S-----S-----------S-----S--S-----------S--S---S-------
-------------S----------S-----S--------------S------------------S---------------
-S--S-----------S--S-----------S--S------------------S-------S--S--------------S
-----S-----S----SS-----------------------------S------S--S-S-----SS----S--S-----
--------------------------------------------------------------------------------
----------S-------------S-------------------------------SS----------------------
------------------------------------------S-------------S--S---S-SSS---S----SSSS
S-SSSSS--------------------SS-S---------------S-SSS-----------------------------
-----S-------------------S--------S---------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S-------S----------------------------------
-----------------SS-SSSSS-S-----------------------------------------------------
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-------------------------------------S------------------------------------------
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-----SS-------------------------------------------------------------------------
----------------------------------S--------------------------S------------------
-----S------------------------S-------------------------------------------------
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-------------------------------------------------------------------S------------
----------------------------------S-----------------------------SSSSSSSSSSSSSSSS
SSS--------------------------S-------------S---S--------------------------S-----
--------------------------------------------------------------------------------
-----------------------------------------S----------------------S---------------
------------------------------------------S-------------------------------------
---------------S---------------SS-S-SS------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------SSSSSSSS---------S----
-------S------------------------S--------------------SS--SS-----------S---------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S----------------------------S------
-----------------------------------------S--------------------S-----------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
----------------------------S---------------------------------------------------
-----------------------------S--------------------------------------------------
----------------------------------------------------------S-S-------------------
-------------------S-----------------------------------SSSS--SS-----S------SS--S
--------S------S-------------S-S-----SS-S-------------------------------SS----SS
--S----S-S---------S------S----------------------S--S-SS------------------------
-------S----S-------------------S----S------------------------------------------
---S--S-S--S------------------------S-----S-----------------SS----S--S--------S-
S-S-----------------------S-------------------S---------------------------------
--------------S--------------S---------------S-------S-----------------S--------
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>forward_457
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-------------------------------------TCAAGTCAGGTTGTTGGGCA-----------------------
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>reverse_2459
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----------------------------------------------------------GCAATGGCCCAATGTACACC--
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>forward_2122
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----------------------CTGGGTAAGCATCCACCTCC--------------------------------------
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>reverse_3399
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--------------------------------------CAGTACAGCTAGGCCCACTG----------------------
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