>input_sequence_44421
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------GCCCGCCCACCGCCGCCTCTCGCCGGCCGGAGTCCTCAGGTCCGGCCATGGGCAAGGCGGCGCGCTGGATCCGG
GGCTTCCTAGGCGGCGGCGGTAAGAAGGAGCAGAGCAAGGACCAGAAGCCGATACCTCCGCCAACCAATGCC--------
----AAGCGCTGGAGCTTCGGCAAGTCGTCGCGCGACTCGGCGGAGGCCGCTGCAGCCGCTGCGGCAACGTCGGCGCGCG
GGGGCAACGCGGCGATCGCGAGGGCGGCTGAGGCGGCCTGGCTCAGGTCGGTGTACGACGAGACGGAGCGGGAGCAGAGC
AAGCACGCCATCGCCGTGGCGGCGGCCACCCAAGCAGCGGCCGACGCGGCCGTGGCTGCGGCCCATGCCGCCGTCGCCGT
CGTGCGTCTCACCAACAAGGGCCG---------------CGCCGCCCACGCCGGCGAGCACCGCGGACCGGCGGCCGCGG
CGGTCCGGATCCAGACGGCATTCCGAGGCTTCTTGGTAAGCATCTATCAGAA--------------------------TC
AGCAAGACCAGTTGCCATCTACTGCAAATACAGCGATCTCCTGCTGCGCTGTGTTCTTGCCGTGACGAAATCTCGCGCTG
GTTTGCAGGCTAAGAAGGCGCTGCGTGCGCTCAAGGCCCTCGTGAAGCTGCAGGCGCTGGTGCGCGGCTACCTCGTGCGA
AAGCAGGCGGCCGCCACACTGCAGAGCATGCAGGCGCTGGTGCGCGCGCAGGCCAGCATGCGCGCCCACCGCGCCGTCGC
CAGCGCCGCTCTCCCGCAGC---------TCCACCATTCTTCTTTCCGGCCGCGCCGCTCCTTGGTAGGCCATCAATTAA
ACTATTCCGTATA-TTTTTTGATTCCGTTTGTCAACGTACTCCATCTGTAATCAATGGCGACGATTCTAATGGAAATCAT
GCCATGTGCAATGGTTGTGG------------------------------------------------------------
-TGCAGCAGGAGCGGTA------CGCGGACGACACGAGGAGCGAGCACGGGGTGGCGGCG---TACAGCCGGAGGCTGTC
GGCGAGCATCGAGTCGTCGTC---CTACGGGTACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCAGGCCCAAAT
CTCGGTCGTCGTCGCGCCGGGCGAGCTCCCCGCTGCTCGACCCGTGCGAGGAATGGTGCGCCGCCGCCAACCCCATGTCG
TCGCCGCTGCTGCTGCCGTGCCACATGCCAGGCGGCGCGCCGCCCCGCATCGCCGTGCCGACCCCGCGCCACCTCCCCGA
GTACGACTGGTGCGCGATGGAGAAGGCCCGGCCGGCGACGGCGCAGTGCACGCCGCGGTACATGAACGCGAACGCGCCGG
CCACCCCGACCAAGAGCGTGTGCGGCGGCGGCTACTCGTCCTCATCTCT------------GCTCAACTGCCCCAGCTAC
ATGTCCAGCACGCAGTCCTTCGAGGCAAAAGTGCGGTCGCACAGCGCGCCGAAGCAGCGGCCGGAGCCCCCCACGAACAG
GAAGCGGGTGCCGCTGAGCGAGGTGGTGG---TGGTGGAGTCCCGGGCCAGCCTGAGCGGGGTCGGA------ATGCAGC
GGTCGTGCAACCGGGT------GGAGGAGGCGTTCAACTTCAAGACGGCCGTCGTCGGCCGCCTCGACCGCCCGTCGACG
GGGTCCGTCGAGAATGACCGGCAAGCGTCCTTGCAGAGGAGGTGGTGATCTGCTCTGCTCTGTTCTAGCCACTTCACACG
GTTAATGGCAGTGAGACGACGAGAGCTCTGCGTAGTAATTAGCAATAAGAATGCGTTTTGAGG-----------------
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>chr1D_1_TraesCS1D01G123800
CTTGTCCTGGCTAGGTGACGTCCCCACGATCACTCATCATCAGATCTCAACACCCAAGGATATCTTGGTCCGTTGCCTAT
CGGCGATTCGTGGGC-------------GGTACGTGTGATCCATATGGCTGTAGCCTTTTGCCATGCCCAGCCTAGCAGT
GGTTCGTACGTGGTATATGCGCGCAGTCATGTGTGCATGCCCGCGCCTGCGAAGGAGGGAACAGTGACTGGGAGTCAAGC
TTCTGTTCACCGGCGAGAAAAAAGGGAG-ACTGGAGACGGTCTAATCGCATCTCCGGCCGCCCGTCCCGATCTCTGTCAT
GCGCGCGCGTTATTGAAATTTGTAGGGTTGCTTGGTCGATCTGGGCATGCACTCTCTCCCCTGCACTGCACTGCACTGGA
CCTACTGTGTGGAGTTTGGAGTCATGCATGCGTGCATTGTCTTGTTCCGTGGCCGCGTCTCCCTCCCTCGTGCCCCTGCT
GGGTTTGGGTGTGGGCTTTTCTTGGCAACTTGGCCGCTGGGGCTGGGGGGCAGCGGCAGATGGCTGGCACCGTGCAGTG-
----GAGGGCCCGCCCCGGGG---TAAAACGAAACATCTTCCATTGTTTTCATTCTT---TCCTCACGTA---AACATTT
TTCCAAGTAAGG-TTTTCGGTGCCAAAAATGAGTTCCCGTCG----TTCTCGAGCTGGCCACCTTTAAATTCCCCTTTCT
TGTTCGAGTCTTTTTGGGCGTACGCTGTCCCTTTTTGAACCTTGGGTCGCCCAAAATCTCTTGCATGGCAAATGTCGCTT
CCTTGGACGTCGCTAATCCATTTCTTTAATAAATTCTTTAC--------TTAATTAACGAGAGAGGGAGAGGGGGCCCCG
CGCTAATGGCTGCCCTAATAGCGTAGGTAGCCCC-TTTT----TATCTCCGGCCCGACGCCATCCACGCGCCCCCTTCCG
TTTCCCTCTCTTATTCAAACCTCCCCTTCTTTTTCTACTAGCTCACTCACGCTTCCCACTGCTCTCTTGGTTCACCAGCA
AGCCCTGCCCGCCCACCGCCGCCTCTCGCCGGCCGGAGTCCTCAGGTCCGGCCATGGGCAAGGCGGCGCGCTGGATCCGG
GGCTTCCTAGGCGGCGGCGGTAAGAAGGAGCAGAGCAAGGACCAGAAGCCGATACCTCCGCCAACCAATGCC--------
----AAGCGCTGGAGCTTCGGCAAGTCGTCGCGCGACTCGGCGGAGGCCGCTGCAGCCGCTGCGGCAACGTCGGCGCGCG
GGGGCAACGCGGCGATCGCGAGGGCGGCTGAGGCGGCCTGGCTCAGGTCGGTGTACGACGAGACGGAGCGGGAGCAGAGC
AAGCACGCCATCGCCGTGGCGGCGGCCACCCAAGCAGCGGCCGACGCGGCCGTGGCTGCGGCCCATGCCGCCGTCGCCGT
CGTGCGTCTCACCAACAAGGGCCG---------------CGCCGCCCACGCCGGCGAGCACCGCGGACCGGCGGCCGCGG
CGGTCCGGATCCAGACGGCATTCCGAGGCTTCTTGGTAAGCATCTATCAGAA--------------------------TC
AGCAAGACCAGTTGCCATCTACTGCAAATACAGCGATCTCCTGCTGCGCTGTGTTCTTGCCGTGACGAAATCTCGCGCTG
GTTTGCAGGCTAAGAAGGCGCTGCGTGCGCTCAAGGCCCTCGTGAAGCTGCAGGCGCTGGTGCGCGGCTACCTCGTGCGA
AAGCAGGCGGCCGCCACACTGCAGAGCATGCAGGCGCTGGTGCGCGCGCAGGCCAGCATGCGCGCCCACCGCGCCGTCGC
CAGCGCCGCTCTCCCGCAGC---------TCCACCATTCTTCTTTCCGGCCGCGCCGCTCCTTGGTAGGCCATCAATTAA
ACTATTCCGTATA-TTTTTTGATTCCGTTTGTCAACGTACTCCATCTGTAATCAATGGCGACGATTCTAATGGAAATCAT
GCCATGTGCAATGGTTGTGG------------------------------------------------------------
-TGCAGCAGGAGCGGTA------CGCGGACGACACGAGGAGCGAGCACGGGGTGGCGGCG---TACAGCCGGAGGCTGTC
GGCGAGCATCGAGTCGTCGTC---CTACGGGTACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCAGGCCCAAAT
CTCGGTCGTCGTCGCGCCGGGCGAGCTCCCCGCTGCTCGACCCGTGCGAGGAATGGTGCGCCGCCGCCAACCCCATGTCG
TCGCCGCTGCTGCTGCCGTGCCACATGCCAGGCGGCGCGCCGCCCCGCATCGCCGTGCCGACCCCGCGCCACCTCCCCGA
GTACGACTGGTGCGCGATGGAGAAGGCCCGGCCGGCGACGGCGCAGTGCACGCCGCGGTACATGAACGCGAACGCGCCGG
CCACCCCGACCAAGAGCGTGTGCGGCGGCGGCTACTCGTCCTCATCTCT------------GCTCAACTGCCCCAGCTAC
ATGTCCAGCACGCAGTCCTTCGAGGCAAAAGTGCGGTCGCACAGCGCGCCGAAGCAGCGGCCGGAGCCCCCCACGAACAG
GAAGCGGGTGCCGCTGAGCGAGGTGGTGG---TGGTGGAGTCCCGGGCCAGCCTGAGCGGGGTCGGA------ATGCAGC
GGTCGTGCAACCGGGT------GGAGGAGGCGTTCAACTTCAAGACGGCCGTCGTCGGCCGCCTCGACCGCCCGTCGACG
GGGTCCGTCGAGAATGACCGGCAAGCGTCCTTGCAGAGGAGGTGGTGATCTGCTCTGCTCTGTTCTAGCCACTTCACACG
GTTAATGGCAGTGAGACGACGAGAGCTCTGCGTAGTAATTAGCAATAAGAATGCGTTTTGAGGTGTTCTTGGGAGCTCTC
GTCCCTGCTTTCTTTTTGTTCTTGCTTTAGTAGTTG---TGATCAATCATGTGATTTGTGTTCCTTTTTCTTTCTATTTT
TTGGTTATGTGTTTGCTGGTCGCAAACAAGTGTGGTAGGAGAATTTGATTCATAGCGCACTTTGATGTAAATTCCTTCTT
AATCCATGTGTTCTTCCATTGCGACTCGTTCTGTTGTTTGCTTTTGCTCTGCATTATGTTTCTTGTTTATTCAGAGCTTC
AGCCGGGTTTCGTTTTGTTGATAAAAGCATCGTTGGAATGTGGGCATCAATCCCTCTCATGCGTCATCCTGTCAACTAAT
AAGAGCATCTATAGCGGAAGACATCAAATCCACCGTGG---------------------------------G--CTGACC
GGACACTCCTTATTTTGCTGCGTCCACATTTGTGTATATCAAATCGGGCCCCTCATATCCATACAATACATGCACGTATA
AAAATAAACTTACGTAGATCAACGAACTAGCACCAAGTCTAGTTATATCGGGCATAATTATAGCATAAACAATCATCGGA
CAACCAAACGATGCAGTTTCAA----------------------------------AAAATATTCGGCGTGCCTCCTCGC
CTTTGCCTTCGTCGCCGCCTTCGCCGACGCCTCACGCTCCGACAACTCGATAGCGAGCCGAAGCGCCTTGGCGTTCTTCC
GCCGCAGTCGATATGCATCTGTCTCTGCCGTTGTCATGGAGCGCCGGAGGATGGACGCAATGAGCGC-GTCCTCGAGATT
AACCGGCACGCGCGCGAGTGCCCGGCGCCTCGCCGACGCGTTGCTCGCCGCCATAGCCTCCCTCGCGCGTTGCCTCTCGC
GACGTGCGGCCCGCGCCTTCGACTCGGGCTTCCTCGATCGGCCCGGCGCAGGCGAGGGCACAAGCACCCAACGGTGCCAG
TGGACGCCCTCCGGAGGTAGAATGGATGTGGTGGAGGCGGGGCGGCGTACCTGGAGTGGGACAGAGCAGACTGTGTACCA
CCGTGTTTGACACAAA
>chr1B_1
CTTGTCCTGGCTCGGTGACGCCCCCACGATCACACATCATCAGATCTCAACACCCAAGGATATCTTGGTCCGTTGCCCCT
TGGCGATCGT---------GCTCGTGCTGGTACGTGTGATCCATATGGCTGTAGCCTTTTGCCATGCCCAGCCTAGCAGT
GGTTCGTACGTGCTATATGCGCGCAGTCATGTGTGCATGCCCGCGCCTGCGAAGGAGGGAACAGTGACTGGGAGTCAAGC
TTCTGTTCACCAGCGAGAAAAAAGGGAGCACTGGAGACGGTCTAATCGCATCTCCGGCCACCCGTCTCGATCTCTGTCAT
GCGCGCGCGTTATTGAAATTTGTAGGGTTGCTTGGTCGATCTGGGCATGCACTCTCGCCCCCGCACT-----GCACTGGA
CCTACTGTGTGGAGTTTGGAGTCATGCATGCGTGCATTGTCTTGTTCCGTGGCCGCATCTCCCTCCCTCGTGCACCTGTT
GGGTTTGGGTGTGGGCTTTTCTTGGCAACTTGGCCGCTGGGGCTGGGGGGCAGCGGCAGATGGCTGGCACCCTGCAGTGG
AGTGGAGGGCCCGCCCCGGCG---TAAAACCAAACATCTTGCATTGTTTTCCTTGTTTCCTCCTCACGTA---AACATTT
TTCCAAGTAAGG-TTTTGGGTGCCAAAAATGAGTTCCCATCG----CTCTCGAGCTGGCCACCTTTAAATTCCCCTTTCT
TGTTCGAGTCTTTTTGGGCGTACGCTGTCCCTTTTTGAACCTTGGGTCGCCCAAAATCTCTTGCATGGCAAATGTCGCTT
CCTTGGACGTCGCTAATCCATTTCTTTAATG----------------AATTAATTAACGAGAGAGGAAGAGGG--CCCCG
CGCTAATGGCTGCCCTCATCGCGTAGGTAGCCCC-TTTTTATCTATCTCCGGCCCGACGCCATCCACGCGCCCCCTTCCG
TTTCCCTCTCTTATTCAAACCTCCCCTTCTTTTTCTACTAGCTCACTCACGCTTCCCACTGCTCTCTTGGTTCACTAGCA
AGCCCT----GCCCACCGCCGCCTCTCGCCGGCCGGAGTCCTCACGTCCGGCGATGGGCAAGGCGGCGCGCTGGATCCGG
GGCTTCCTAGGCGGCGGCGGTAAGAAGGAGCAGAGCAAGGACCAGAAGCCGATACCTCCGCCAACCAATGCC--------
----AAGCGCTGGAGCTTCGGCAAGTCGTCGCGGGACTCGGCGGAGGCCGCTGCCACCGCTGCGGCTACGTCGGCGCGCG
GGGGCAACGCGGCGATCGCGAGGGCGGCTGAGGCGGCCTGGCTCAGGTCGGTGTACGACGAGACGGAGCGGGAGCAGAGC
AAGCACGCCATCGCCGTGGCGGCCGCCACCCAAGCGGCGGCCGACGCGGCCGTCGCTGCGGCCCATGCCGCCGTCGCCGT
CGTGCGTCTCACCAACAAGGGCCG---------------CGCCGCCCACGCCGGCGAGCACCGCGGACCGGCGGCCGCGG
CGGTCCGGATCCAGACGGCATTCCGAGGCTTCTTGGTAAGCATCAATCAGAA--------------------------TC
AGCAAGACCATTTGCCATCTACTGCAAATATAGCGATCTCCTGCTGCGCTGTGTTCTTGCCGTGACGAAATCTCGCGCTG
GTTTGCAGGCTAAGAAGGCGCTGCGTGCGCTCAAGGCGCTGGTGAAGCTCCAAGCGCTGGTGCGCGGCTACCTCGTGCGG
AAGCAGGCGGCCGCCACGCTGCAGAGCATGCAGGCGCTGGTGCGCGCGCAGGCCAGCATGCGCGCCCACCGCGCTGTCGC
CAGCGCCGCTCTCCCGCAGC---------TCCACCATTCTTCTTTCCGGCCGCGCCGCTCCTTGGTAGGCCATCAATTAA
ACCACTCCATCTATTTTTTTGATTCCGTTTGTCAACGTACTCCATCTGTAATCAATGGCGACGATTCTAACGGAAATCAT
GTCATGTGCAATGGTTGTGG------------------------------------------------------------
-TGTAGCAGGAGCGGTA------CGCGGACGACACGCGGAGCGAGCACGGGGTGGCGGCG---TACAGCCGGAGGCTGTC
GGCGAGCATCGAGTCGTCGTC---CTACGGGTACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCAGGCCCAAAT
CTCGGTCGTCGTCGCGCCGGGCGAGCTCCCCGCTGCTCGACCCGTGCGAGGAGTGGTGCGCCGCCACCAACCCCATGTCG
TCGCCGCTGCTGCTGCCGTGCCACATGCCAGGCGGCGCGCCGCCCCGCATCGCCGTGCCGACCCCGCGCCACCTCCCGGA
GTACGACTGGTGCGCGATGGAGAAGGCCCGGCCGGCGACGGCGCAGTGCACGCCGCGGTACATGAACGCGAACGCGCCGG
CCACCCCGACCAAGAGCGTGTGCGGCAGCGGCTACTCGTCGTCGTCTCT------------GCTCAACTGCCCCAGCTAC
ATGTCCAGCACGCAGTCCTTCGAGGCAAAAGTGCGGTCGCACAGCGCGCCGAAGCAACGGCCGGAGCCCCCCACAAACAG
GAAGCGGGTGCCGCTGAGCGAGGTGGTGG---TGGTGGAGTCTCGGGCCAGCCTGAGCGGGGTCGGA------ATGCAGC
GGTCGTGCAACCGGGT------GGAGGAGGCGTTCAACTTCAAGACGGCCGTCGTCGGCCGCCTCGACCGCCCGTCGACG
GGGTCCGTCGAGAATGACCGGCAAGCGTTCTTGCAGAGGAGGTGGTGATCTGCTCTGCTCTGTTCTAGCCACTTCACACG
GTTAATGGCAGTGAGACGACGAGAGCTCTGCGTAGTAATTAGCAATAAGAATGCGTTTTGAGGTGTTCTTGGGAGCTCTC
GTCCCTGCTTTCTTTTTGTTCTTGCTTTAGTCGTTGTGATGATCAATCATGTGGTTTGTGTTCCTTTTTCTTTCTATTTT
TTGGTTATGTGTTTGCTGGTCGCAAACAAGTGTGGTAGGAGAATTTGATTCATAGCGCACTTTGATGTAAATTCCTTCTC
AATCCATGTGTTCTTCCATTACGACTCGCTCTGTTGTTTGCTTTTGCTCTGCATTATGTTTCTTGTTTATTCACAGCTTC
AGCCGGGTTTCGTTCTGTT--------------------------------CCCTCTCATGCGTCATCCTGTCAACTAAT
AAGAGCATCTATAGCGGAAGACATCAAATGCACGATGG---------------------------------GCACTGACC
GGACACTCCTTATTTCACTGCGTCCACATTTGTGTATATCAAATCTGGCCCCT-------ATGCAACCCATGCACGTATG
AAAATA------CGTAGATCAACAAACTAGCACCAAGTTTAGTTATATCGGGCATAATTGTAACATAAGCGATCATCGGA
CAACCAAAAGATGCAGTTTCAACTTTCAATAGAAAAGTACGATTAAATACGATTAAAAAATACTCGGCGTACCTCCTCGC
CTTTGCCTTCGTCGCCGCCTTCGCCGACGCCTCACGCTCCGACAGCTCGATAGCGAGCCGGAGCGCCTTGGCGTTCTTCC
GCCGCAGTCGATATGCATCTATCTCTGTTGTTGTCATGGAGCGCCGGAGGACGGACGCAATGAGCGCCGTCCTCGGGATT
GACCGGCACGCGCGCGAGTGCCCGGCGCCTCGCCGACGCGTTGCTCGCCGCCATAGCCTCCCTCGCGCGTTGCCGCTCGC
GACGTGCGGCCCGCGGCTCCGATTCATGCTTCCTCAATCGGCCCGGCGCCGGCGAGGGCACAAGCACCCAACGGTGCCAG
TGGATGCCCTCCGGAGGTAGAATGGACGTGGTGGAGGCGGGGCGGCGTACCTGGAGTGGGACGAAGCAGACTGTGTCCCA
CCGGTGTT--------
>chr1A_1
CTTGTCCTGGCTCGGTGACGTCCCCACGATCACTCATCGTCAGATCTCAACACCCAAGGATATCTTGGTCCGTTGCCTCT
TGGCGGTCGTGGGCGGTACGCTCGTGCTGGTACGTGCGATCCATATGGCTGTAGCCTTTTGCCATGCCCAGCCTAGCAGT
GGTTCGTACGTGGTATATGCGCGCAGTCATGTGTGCATGCCCGCGCCTGCGAAGGAGGGAACAGTGACTGGGAGTCGAGC
TTCTGTTCACCAGCGAGAAAAAAGGGAGCACTGGAGACGGTCTAATCGCATCTCCGGCCGCCCGTCCCGATCTCTGTCAT
GCGCGCGCGTTATTGAAATTTGTAGGGTTGCTTGGTCGATCTGGGCATG------------------------CACTGGA
CCTACTGTGTGGAGTTTGGAGTCATGCATGCGTGCATTGTCTTGTTCCGTGGCCGCATCTCCCTCCCTCGTGCCGCTGTT
GGGTTTGGGTGTGGGCTTTTCTTGGCAACTTGGCCGCTGGGGCTGGGGGGCAGCGGCAGATGG----------GCAGTG-
----GAGGGCCCGGCCAGGGATAATAAAATGAAAGATGTTCCATTGTTTTCCTTCTTTCCTCCTCACGTACAAAACATAT
TTGCAAGTAAGGCTTTTGGGTGCCAAAAATGAGTTCCCATCCATCCTTCTCGAGCTGGCCACCTTTAAATTCCCCTTTCT
TGTTCGAGTCTTTTTGGGCGTACGCTGTCCCTTTTTGAACCTTGGGTCGCCCAAAATCTCTTGCATGGCAAATGTCGCTT
CCTTGGACGTCGCTAATTCATTTCTTTAATAAATCCTTTAATGAATTAATTAATTAACGAGAGAGG------G--CCCTG
CGCTAATGGCTGCCCTCATCGCGTAGGTAGCCCCCTTTT----TATCTCCGGCCCGACGCCATCCACGCGCCCCCTTCCG
TTTCCCTCTCTTATTCAAACCTCCCCTTCTTTTTCTACTAGCTCACTCACGCTTCCCACTGCTCTCTTTGTTCACTAGCA
GGCCCT----GCCCACCGCCGCCTCTCGCCGGCCGGAGTCCTCAGGTCCGGCGATGGGCAAGGCGGCGCGCTGGATCCGG
GGCTTCCTAGGAGGCGGCGGTAAGAAGGAGCAGAGCAAGGACCAGAAGCCGATACCTCCGCCAACCAATGCC--------
----AAGCGGTGGAGTTTCGGCAAGTCGTCGCGGGACTCGGCGGAGGCCGCTGCCACCGCTGCGGCTACGTCGGCGCGCG
GGGGCAACGTTGCGATCGCGAGGGCGGCTGAGGCGGCCTGGCTCAGGTCGGTGTACGACGAGACGGAGCGGGAGCAGAGC
AAGCACGCCATCGCCGTGGCGGCCGCCACCCAAGCGGCGGCCGACGCAGCCGTGGCTGCGGCCCATGCCGCCGTCGCTGT
CGTGCGGCTCACCAACAAGGGCCG---------------CGCCGCCCACGCCGGCGAGCACCGCGGACCGGCGGCCGCGG
CGGTCCGGATCCAGACGGCATTCCGAGGCTTCTTGGTAAGCATCAATCAGAA--------------------------T-
-----------------------------ACAGCGATCTCCTGCTGCGCTGTGTTCTTGCCGTGACGAAATCTCGCGCTG
GTTTGCAGGCTAAGAAGGCGCTGCGTGCGCTCAAGGCGCTCGTGAAGCTGCAGGCGCTGGTGCGCGGCTACCTCGTGCGA
AAGCAGGCGGCCGCCACGCTGCAGAGCATGCAGGCGCTGGTGCGCGCGCAGGCCAGCATGCGCGCCCACCGCGCCGTCGC
CAGCGCCGCTCTCCCGCAGC---------TCCACCATTCTTCTTTCCGGCCGCGCCGCTCCTTGGTAGGCCATCAATTAA
ACTACTCCGTATGTTTTTTTGATTCCGTTTGTCAACGTACTCCATCTGTAATCAATGGCGACGATTCTAACGGAAATCAT
GTCATGTGCAATGGTTGTGG------------------------------------------------------------
-TGCAGCAGGAGCGGTA------CGCGGACGACACGCGGAGCGAGCACGGGGTGGCGGCG---TACAGCCGGAGACTGTC
GGCGAGTATCGAGTCGTCGTC---CTACGGGTACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCAGGCCCAAAT
CTCGGTCGTCGTCGCGCCGGGCGAGCTCCCCGCTGCTCGACCCGTGCGAGGAGTGGTGCGCCGCCGCCAACCCCATGTCG
TCGCCGCTGCTGCTGCCGTGCCACATGCCAGGCGGCGCGCCGCCCCGCATCGCCGTGCCGACCCCGCGCCACCTCCCGGA
GTACGACTGGTGCGCGATGGAGAAGGCCCGGCCGGCGACGGCGCAGTGCACGCCGCGGTACATGAACGCGAACGCGCCGG
CCACCCCGACCAAGAGCCTGTGCGGCGGCGGCTACTCGTCGTCGTCTCT------------GCTCAACTGCCCCAGCTAC
ATGTCCAGCACGCAGTCGTTCGAGGCAAAAGTGCGGTCGCACAGCGCGCCGAAGCAGCGGCCGGAGCCCCCCACGAACAG
GAAGCGGGTGCCGCTGAGCGAGGTGGTGG---TGGTGGAGTCCCGGGCCAGCCTGAGCGGGGTCGGA------ATGCAGC
GGTCGTGCAACCGGGT------GGAGGAGGCGTTCAACTTCAAGACGGCCGTTGTCGGCCGCCTCGACCGCCCGTCGACG
GGGGCCGTCGAGAATGACCGGCAAGCGTTCTTGCAGAGGAGGTGGTGATCTGCTCTGCTCTGTTCTAGCTACTTCACACG
GTTCATGGCAGTGAGACGACGAGAGCTCTGCGTAGTAATTAGCAATAAGAATGCGTTTTGAGGTGTTCTTGGGAGCTCTC
GTCCCTGCTTTCTTTTTGTTCTTGCATTCATCGTTG---TGATCAATCATGTGATTTGTGTTCCTTTTTCTTTCTATTTT
TTGGTTATGTGTTTGCTGGTCGCAAACAAGTGTGGTAGGAGAATTTGATTCATAGCGCACTTTGATGTAAATTCTTTCTC
AATCCCTGTGTTCTTCCATTACGACTCGTTCTGTTTTTTGCTTTTGCTCTGCATTATGTTTCTTGTTGATTCCGAGCTTC
AGCCGGGTTTCGTTCCGTTGATAAAAGCATCGTTGGAATGTGGGCGTCAATCCCTCTCTCACACGGTGACATGCAAAGGT
GCATGTCACCTGATCCCTGTCCATCAAATCCACTCCTCCAATGTCCGCGGATGTGTTCGGCACGTCTGCATGCACTGACC
GAGCATTCTCTATTTTGTTGCATCCACACTCGTGTATGTCAAATCCAGCCCCTCATATCCATGCAATACATGCACGTATG
GAAATAAACGCAGGCG--TCAACGAACTAGCACCAAGTCTAGTTATATCGGGCATAATTGTAGCATCAGCGATCATCGGA
CAACCAAAAGATGTGGTTTCAA----------------------------------------------------------
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>chr3A_1017
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----------------------CTCTGGGCGGCCGGGGCGGCGGGTTCCGGCGATGGGCAAGGCGGCGAGGTGGCTGCGT
GGCCTGCTGGGCGGCGGCGGGAAGAAGGAGCAGGGGAAGGAGCAGAGGCAGCCAGCCACGGCCGCGGCGCCGCACGGGGA
CCGGAAGCGCTGGAGCTTCTGCAAGTCCACCAGGGACTCGGCCGAGGCGGAGGCGGCGGCCGCGGCCG---CCGCGCTCA
GCGGCAACGCGGCGATCGCGCGCGCGGCCGAGGCGGCGTGGCTCAAGTCCTTGTACAACGAGACCGAGCGGGAGCAGAGC
AAGCACGCCATCGCCGTCGCCGCGGCCACCGCGGCGGCGGCCGACGCTGCCGTGGCCGCCGCGCAGGCCGCCGTGGAGGT
CGTGCGGCTCACCAGCAAAGGGCCGACGTCCACGGTGCTCGCCGGCGCCGTCGCCGAGCCCCGCGGCCGCGCCTCCGCCG
CGGTCAAGATCCAGACGGCGTTCCGTGGATTTCTCGTGAGTAACTTCCTGCCGAATATCGAGTATCGACGCCATGATTTC
CGCAGGATTAAGCGCCGACTAATGGAATCAATGCGTGCTTGATTGTC---------------------------------
----GCAGGCCAAGAAGGCTCTGCGCGCGCTCAAGGGGCTGGTGAAGCTGCAGGCGCTGGTGCGCGGCTACCTGGTGCGG
AAGCAGGCGGCGGCCACGCTGCAGAGCATGCAGGCGCTCGTCCGCGCGCAGGCCTGCATCCGCGCCGCCCGCTCGCGCGC
---CGCCGCGCTCCCCACGAACCTTCGCGTCCACCCGACCCCTGTCCGGCCGCGCTACTCGCTGGTAAGTGACCACGGCC
GGCATCG--------------------------------------------TCGCTTGCGACCAAAGCAATCAATCTCAA
TGTCTCCGACCGTCCGAGGTCGCGTTGTTCTAGCTAGCCGACCGTGACAAACGCGCGCGTGCGCGGTCTCTTGCTTGTGT
CTGCAGCAAGAGCGGTGCAGCAGCACGGAGGATTCCCGGAGCGACCACGGCGTGGCGCCGTACTACAGCCGGCGGCTGTC
GGCGAGCGTGGAGTCATCGTCGTGCTACGGGTACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGGCGGCCCAAGT
CGCGCTCCTCCTCGCTCCGCACGACCTCCCCCGGCGCCA------GCGAGGAGTG------CTACGCTCACTCGGCGTCG
TCGCCGCT---------------CATGCCGTGCCGACCGCCCCCGCGGATCGCGGCGCCGACCGCGCGCCACTTCCCGGA
GTACGAGTGGTGCG------AGAAGGCCCGGCCGGCGACGGCGCAGAGCACGCCCCGGTACGCGAGCT---ACGCGCCGG
TGACGCCGACCAAGAGCGCGTGCGGCGACCACGGATACACGTACAGCAACAGCCCGTCGGCGCTCAACTGCCCGAGCTAC
ATGTCGGGCACGCGGTCGTCTGTGGCGAAGGTGCGGTCGCAGAGCGCGCCGAAGCAGCGGCCGGAGGAGGGCGCGGTGCG
GAAGAGGGTGCCGCTGAGCGAGGTGATCATCCTGCAGGAGGCCCGGGCGAGCCTGGGCGG---CGGCGGGGGCGCGCAGA
GGTCGTGCAACCGGCCGGCGCAGGAGGAGGCGTTCAGCTTCAAGAAGGCCGTGGTGAGCCGCTTCGACCGCTCGTCG---
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>chr3D_1041
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----------------------------------------------TCCGGTGATGGGCAAGGCGGCGAGGTGGCTGCGC
GGCCTGCTGGGCGGCGGCGGGAAGAAGGAGCAGGGGAAGGAGCATAGGCGGCCGGCCACGTCCACGGCGCCGCACGGGGA
CAGGAAGCGCTGGAGCTTCTGCAAGTCCACCAGGGACTCAGCCGAGGCGGAGGCGGCGGCCGCGGCCG---CCGCGCTCA
GCGGCAACGCGGCGATCGCGCGGGCGGCCGAGGCGGCGTGGCTCAAGTCCTTGTACAACGAGACCGAGCGGGAGCAGAGC
AAGCACGCCATCGCCGTCGCCGCGGCCACCGCGGCGGCGGCCGACGCTGCCGTGGCCGCGGCGCAGGCCGCCGTGGAGGT
CGTGCGGCTCACCAGCAAAGGGCCGACGTCGACGGTGCTCGCCGTCGCCGTCGCGGAGCCCCGTGGCCGCGCCTCCGCCG
CGGTCAAGATCCAGACAGCGTTCCGTGGCTTCCTGGTGAGTAACTTCCGGCCGAATATCGAGTATCGACGCCATGATTTC
CGCAGGATTAAGCGCTGACTAATCGAATCAATGCGTGTTGAATTACC---------------------------------
----GCAGGCCAAGAAGGCTCTGCGCGCGCTCAAGGGGCTGGTGAAGCTGCAGGCGCTCGTGCGCGGCTACCTGGTGCGC
AAGCAGGCGGCGGCCACGCTGCAGAGCATGCAGGCGCTCGTCCGCGCGCAGGCCTGCATCCGCGCCGCCCGCTCGCGCGC
---CGCCGCGCTCCCCACGAACCTTCGCGTCCACCCCACTCCTGTCCGGCCGCGCTACTCGCTGGTAAGTGGCCACGGCC
GGCATCG--------------------------------------------TCGCTTGCGACCAAAGCAATCAATCTCAA
TGTCTCCGACCGTCCGAGGTCGCGTTGTTCTAGCTAGCCGACCGTAACAAACGTGCGCGTGCGCGGTTTCTTGCTTGTGT
CTGCAGCAAGAGCGGTACAGCACCACTGAGGATTCCCGGAGCGACCACAGCGTGGCGCCGTACTACAGCCGCCGGCTGTC
GGCGAGCGTGGAGTCGTCGTCGTGCCACGGGTACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCCGGCCCAAGT
CGCGCTCCTCCTCGCTCCGGACGACCTCCCCCGGCGCCA------GCGAGGAGTG------CTACGCCCACTCGGTGTCG
TCGCCGCT---------------CATGCCGTGCCGGGCGCCCCCGCGGATCGCCGCGCCGACCGCGCGCCACTTCCCGGA
GTACGAGTGGTGCG------AGAAGGCCCGGCCGGCGACGGCGCAGAGCACGCCCCGGTACGCGAGCT---ACGCGCCCG
TCACGCCGACCAAGAGCGCGTGCGGCGGC------TACACCTACAGCAACAGCCCGTCGACGCTCAACTGCCCCAGCTAC
ATGTCGGGCACGCAGTCGTCCGTGGCGAAGGTGCGGTCGCAGAGCGCGCCGAAGCAGCGGCCGGAGGAGGGCGCGGTGCG
GAAGAGGGTGCCGCTGAGCGAGGTGATCATCCTGCAGGAGGGCCGGGCGAGCCTGAGCGG---CGGC------ACGCAGA
GGTCGTGCAACCGGCCGGCGCAGGAGGAGGCGTTCAGCTTCAAGAAGGCCGTGGTGAGCCGCTTCGACCGCTCGTCG---
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>chr3B_1586
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----GCAGGCCAAGAAGGCTCTGCGCGCGCTCAAGGGGCTGGTGAAGCTGCAGGCGCTGGTGCGCGGCTACCTGGTGCGG
AAGCAGGCGGCGGCCACGCTGCAGAGCATGCAGGCGCTCGTCCGCGCGCAGGCCTGCATCCGCGCTGCCCGCTCGCGCGC
---CGCGGCGCTCCCGACGAACCTTCGCGTCCACCCCACTCCTGTCCGGCCGCGCTACTCGTTGGTAAGTGACCACGGGT
CCACGGCCGGC---------------------------------------ATCGCTTGCGACCAAAGCAATCGATCTCAA
TGTCTCTGACCGTCCGAGGTCGCGTTGTTCTAGCTAGCCGACCGTAACAAATGTGCGCGTGCGTGGTTTCTTGCTTGTGT
CTGCAGCAAGAGCGGTACAGCACCACGGAGGATTCCCGGAGCGACCACCGCGTGGCGCCGTACTACAGCCGCCGGCTGTC
GGCGAGCGTGGAGTCGTCGTCGTGCTACGGCTACGACCGGAGCCCCAAGATCGTGGAGATGGACACCGGCCGGCCCAAGT
CGCGCTCCTCCTCGCTCCGGACGACCTCCCCCGGCGCCA------GCGAGGAGTG------CTACGCCCACTCGGTGTCG
TCGCCGCT---------------CATGCCGTGCCGAGCGCCCCCGCGGATCGCGGCGCCCACCGCGCGCCACTTCCCGGA
GTACGAGTGGTGCG------AGAAGGCCCGGCCGGCGACGGCGCAGAGCACGCCCCGGTACACGAGCT---ACGCGCCGG
TGACGCCGACCAAGAGCGTGTGCGGCGGC------TACACCTACAGCAACAGCCCGTCGACGCTCAACTGCCCCAGCTAC
ATGTCGAGCACGCAGTCGTCCGTGGCGAAGGTGCGTTCGCAGAGCGCGCCGAAGCAGCGGCCGGAGGAGGGCGCGGTACG
GAAGAGGGTGCCGCTGAGCGAGGTGATCATCCTGCAGGAGGCCCGGGCGAGCCTGGGCGG---CGGCGGGGGCACGCAGA
GGTCGTGCAACCGGCCGGCGCAGGAGGAGGCGTTCAGCTTCAAGAAGGCCGTCGTGAGCCGCTTCGACCGCTCGTCG---
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------
>SNPs
------------S-----------------------------------------------------------------S-
S------SSSS--SS-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------S----S-----SSSSS--------
--------------------------------------------------------S---------------------S-
-----------------------------------------------------------------------S--------
---------------------------------------------------S----------------------------
-----------------S--------------------S-----------------------------------------
--------------------------------------------------------------------------------
----------------------------------S-----S-------------------------S------SS-----
----------------S--S------------------------------------------------------------
---------------------------------------------------------------------------S----
------SSSS------------------------------------------S---------------------------
--------------------------------------------------------------------------------
---------------------------------S--------------------S-----------S-------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
-------------------------------------S------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
-------------------------------------------------------------------------------S
--------------------S-----------------------------------------------------------
--------------S------------------------------S----------------------------------
---------------------------------SS---------------------------------------------
---------------------------------------------S----------------S----------------S
---------SS------------------------------------------------S--------S-S---------
--------S-----------------------------------------------------S-------S---------
--------------------------------------------S---------------S-------------------
--------------------S------SS----------------------S-----------------------S----
S-------------------------------------------------------------------------S-----
---------------S--S---S--SS--------S-------------S------------------------------
----S---------------------S-----------------------------------SS------------S---
---SSS--SSSSSSSS
>forward_377
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GATCTGGGCATGCACTCTCT-----------------------
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>reverse_2002
--------------------------------------------------------------------------------
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-CCATGTGCAATGGTTGTGGT-----------------------------------------------------------
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----------------
>forward_874
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------TAACGAGAGAGGGAGAGGGG------
--------------------------------------------------------------------------------
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>reverse_2524
--------------------------------------------------------------------------------
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-------------------------------------------ATCTCTGCTCAACTGCCCCA-----------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>forward_1036
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CACTGCTCTCTTGGTTCACC----
--------------------------------------------------------------------------------
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----------------
>reverse_3141
--------------------------------------------------------------------------------
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--------------------GCGACTCGTTCTGTTGTTTGC---------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
