>input_sequence_44411
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---ATCTAGTAACCAATCACAAACTTGCCTCCCCTGATTTTCAGGGGTGGTCCTGATTGAAACGCTATGGAGCGACAGGA
CGCTGAGCATGCCTTCATTTAAAGCAGTTG--------AAAGGGAGCAAAGCACTTTGTCGTCCGAGGAACATCTTTAAC
AGAACGCGGAAGGATATTTAGATAGT-----ACAAACAGCACAGACTGTTCACTAATGATGTACGTA-------------
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--GTACCTAGCATCATTCCACCATCTTCTCTTTCGAGCTGGCAATCTGGTTTCTCATCTCTGCCACAAAGAAAAGGAAGC
TTCACACTCTGTCTCCTACAACAAG--------GGAAGAGCTCAAGCCGGGCGCCTACAAATA-----------------
----------------------------------------------------TTAGAGCAGCCAGAACTAATCCATGAAG
CAAATATACGTTGATTGACCACC---------------------------------------------------------
GGTGCCATGGCTACTGCGTCCTTCGTCGCCTACCTCGAGACGCCTAGAGAGCTCCGGGTGCTGGGGTTCCGGGCGCCGCC
CCCGTCTCCGGTCACCGGCGTTCTATCCAACGGTGGCTCTGGATCCCCTGAGTACGGCGAGTGCCCCGACGGCAACGAAG
ATGACGAGGTCGGCAGGTTCCTGCGCCGCTCCGCCAGGGTCCCGGTGCTGCGGCTGCCGGAGAGGGACATCCCACGGAAG
AAGAAGAA------TGATAAGGCGGTGTGGGCTCCCCCAGTCATCGACATGCGCCTGCTGGCCACGCCGGATACCGGTGG
GCTAGTGGTGGAGACGCTGAGGTCGGCGGCCGTCGCGTTTGGCTGCTTCCAGGTGGTTGGCCATGGGGTCAATGAGTGCT
TGGTCTCTGCTGCGGCGGGGAGGGCGAGTTCGCCTACGCCGGAGGAGGCCGGTGGAGAAGATGACGAAGATGGTGAGGAG
CTGTGGTGGTCACCGAGCGAAGGAGACCAGTTGAGGTGCGAACTTGCCCATTTCATTGGAAGGCAACTAATCAAAGGACT
CCATATGATGCTAACCCCTGGTTTTGCTGTGCCCAGGAACGGAGCAGACGATCTGTTCACCCAGCTGGAGCAAACCGCAG
CTAAACTCATGGACGCCCTGCGG---GACAGCGTTGGCGCCACCGATTCCCTGGCCGGAGCTGACACGAACGGCTCGCTC
CTCTGCATCCGCACGCACCACCGCCGGCAGTGCGATGGCGGAAGCGGCTCTGTTGGCCCTATCACTATCAGCCAGGACGC
CATCCTCAGGATGCTGATCAAGAGCTCACGCCGCCCACGGGCTCTCGCTCTCCACCTCTGCCCCGGCGCCTCCACGTTCC
ACGTCTTCTCTCGGCAGCGGGGACGGTCCAGGTTCCGCCCCCTCGGCGGCGCCGTCGTGGTCACCGTCGGAGACCAGCTT
CAGGTGACGCACCAATCTCTTGAGCGTGACCTTTTTTGATT-CCGAAGCTTACCGGCCTTGCAAATGCACGATGCATCAT
CA---CAATCATACATTGCCTTCTGGTTTACTTTCTTCGCTCTCCACGTATGCAGGCATGGAGCAGTGGACTCTACAAGA
GCGTGGCCGGGAAACCGGCTTACAGCGACGGCGATCTCCGAGCAGACCGCGGCTGTGATGTCGTC---TGGGCGGAGTAC
CTCCACTCCTGCTCTTCGGCTAGCATGGAGAGCGACGAGCCCCTGGACGCGGATGCCGGAAAGATCATTCAGTTGAATGT
GCAGATCATGGTGGCAGCTTCCCTTGTACTCCTT----------------------------------------------
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--------------------TACCACTTTCTCCTGTCATGCTCGTGTACGATTTGGTCTTGA------------------
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------------------------------------------
>chr3D_1_TraesCS3D01G275100
AACTGAGCTATCCCCGCTGTTGATGCCTCTGTTCAAACAAGATTATTTAACCAATACAGCACCTCACGGACTGAGTTGCC
AACATTGTTGATTTTTTGTTAATAAAAGAAGGACCAAACAATGCTGTAACGACTAAAGTTAGTTGGAACAAAACACTTCA
ACCCATTGTTATATGCTAGCTGCTCGTGCGTACTCAACTACTGGCACTGATACAAGATCAACCACTCCAAGCTAACGACA
GAAACAATCGTTAGGGTTTTCGCCGCTTCGCG-CCACGCAGCCGCCGGCCTGCCTCGCCTCCTGTGGCCTTAGGGCTATG
GAGACGCGGTGGATTCCGGTCCTTACTGGCGGGAGGGCTCCGTTTTTAGGTA-TTTTC----TAATTTTCGTAGGGTTTG
TGTCATGTTCAAGAAGACGAGTCAGCGGCGACTTCTT-AAGATGGAATAAGTTTCTCTCTGCCTAG-CCCCCATTTCGGT
GGTGCTTCTAGCGTCGTCGGAGGGTGTGTGGAGGTTTGTCTCCGCCGGATTTTGCAGGATTTGGTCGGCGTTTGTCATCG
GTGGATCCACTTAGATCCGGTCTTT------GTTCGTCTA------TGTTTGCGTGTCTGGTTGGATGCTTTTGATCTAT
GCTTCTCTTCATCGTCGGCGGTTGCTGTTCTGGTGTGCTGGTCCTCTGAGACCTTAGCACGACGACTTCTCGACTGCCTA
CTACGACAAGGTTTGCCCGGCTC---------------CGATGATGGCGGCACGCCTTCGGCTCGCTACAGTGCTTGTAG
TCGTCGCTATATGGTCTATGGATTTGGATGTAATT-TTT-G---CT---TACAGTGTTTTTTGTACTACAAATTGACGGA
TGATGAATAGGTGGGAAGTTTTTCCCGCAAAAAAAACACAGCGATTTTCTTTTTCATTTTTTTCTTTGAAAAGGATGATT
ACCCAGGGCTCTATCAGATAATGCACACAGCGAACAAAAATGCTAGACGTACAAAAGAATACAGGATTTTACAGGCTCTT
TTCATCTAGTAACCAATCACAAACTTGCCTCCCCTGATTTTCAGGGGTGGTCCTGATTGAAACGCTATGGAGCGACAGGA
CGCTGAGCATGCCTTCATTTAAAGCAGTTG--------AAAGGGAGCAAAGCACTTTGTCGTCCGAGGAACATCTTTAAC
AGAACGCGGAAGGATATTTAGATAGT-----ACAAACAGCACAGACTGTTCACTAATGATGTACGTA-------------
--------------------------------------------------------------------------------
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--GTACCTAGCATCATTCCACCATCTTCTCTTTCGAGCTGGCAATCTGGTTTCTCATCTCTGCCACAAAGAAAAGGAAGC
TTCACACTCTGTCTCCTACAACAAG--------GGAAGAGCTCAAGCCGGGCGCCTACAAATA-----------------
----------------------------------------------------TTAGAGCAGCCAGAACTAATCCATGAAG
CAAATATACGTTGATTGACCACC---------------------------------------------------------
GGTGCCATGGCTACTGCGTCCTTCGTCGCCTACCTCGAGACGCCTAGAGAGCTCCGGGTGCTGGGGTTCCGGGCGCCGCC
CCCGTCTCCGGTCACCGGCGTTCTATCCAACGGTGGCTCTGGATCCCCTGAGTACGGCGAGTGCCCCGACGGCAACGAAG
ATGACGAGGTCGGCAGGTTCCTGCGCCGCTCCGCCAGGGTCCCGGTGCTGCGGCTGCCGGAGAGGGACATCCCACGGAAG
AAGAAGAA------TGATAAGGCGGTGTGGGCTCCCCCAGTCATCGACATGCGCCTGCTGGCCACGCCGGATACCGGTGG
GCTAGTGGTGGAGACGCTGAGGTCGGCGGCCGTCGCGTTTGGCTGCTTCCAGGTGGTTGGCCATGGGGTCAATGAGTGCT
TGGTCTCTGCTGCGGCGGGGAGGGCGAGTTCGCCTACGCCGGAGGAGGCCGGTGGAGAAGATGACGAAGATGGTGAGGAG
CTGTGGTGGTCACCGAGCGAAGGAGACCAGTTGAGGTGCGAACTTGCCCATTTCATTGGAAGGCAACTAATCAAAGGACT
CCATATGATGCTAACCCCTGGTTTTGCTGTGCCCAGGAACGGAGCAGACGATCTGTTCACCCAGCTGGAGCAAACCGCAG
CTAAACTCATGGACGCCCTGCGG---GACAGCGTTGGCGCCACCGATTCCCTGGCCGGAGCTGACACGAACGGCTCGCTC
CTCTGCATCCGCACGCACCACCGCCGGCAGTGCGATGGCGGAAGCGGCTCTGTTGGCCCTATCACTATCAGCCAGGACGC
CATCCTCAGGATGCTGATCAAGAGCTCACGCCGCCCACGGGCTCTCGCTCTCCACCTCTGCCCCGGCGCCTCCACGTTCC
ACGTCTTCTCTCGGCAGCGGGGACGGTCCAGGTTCCGCCCCCTCGGCGGCGCCGTCGTGGTCACCGTCGGAGACCAGCTT
CAGGTGACGCACCAATCTCTTGAGCGTGACCTTTTTTGATT-CCGAAGCTTACCGGCCTTGCAAATGCACGATGCATCAT
CA---CAATCATACATTGCCTTCTGGTTTACTTTCTTCGCTCTCCACGTATGCAGGCATGGAGCAGTGGACTCTACAAGA
GCGTGGCCGGGAAACCGGCTTACAGCGACGGCGATCTCCGAGCAGACCGCGGCTGTGATGTCGTC---TGGGCGGAGTAC
CTCCACTCCTGCTCTTCGGCTAGCATGGAGAGCGACGAGCCCCTGGACGCGGATGCCGGAAAGATCATTCAGTTGAATGT
GCAGATCATGGTGGCAGCTTCCCTTGTACTCCTT----------------------------------------------
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--------------------TACCACTTTCTCCTGTCATGCTCGTGTACGATTTGGTCTTGAGAAGCTGCAGCAGGGCTT
GTTGCCCTGACGATGCAGCTCGGTTTTTATTTCAAGTTCAGCTCGGCTTGTGGAAATAGATTTGGTGTGTCAGTTTCGGC
GAGAATAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TATTTAGTACGGGACCAAAAGGATAGGGTAGGAAGCAAGAACCTCTTTGGGGCTCTCACACGA
CCACAGGACCAGACAGGAGCACAGAACATTTAAGTCAGGTGTTTCGACATCTAAGTATCACCTTACACTGCAGTCAAGAG
TCGTCCGCTACACAAAGGATTAACACGACTACAAAACATTTACTACTGTACACACTATTTT-CTATAATTAACAGCCACA
GGCAGAAACATCTTCACAAGAACACGCTAGGCCGCATTCACAAC-TTGCCCACGAACACAAAACTACCACTGAGCTGGAT
CAAAAAGATGAGGCTAACTCGCTCTTCAGCCCACATGGCAAAAGATTTCTACGATACGGTACGCCCATAACAGACTGAAG
CAAGGTAGAGATTCTTGGACCATTTCTCCTGCAATGACACAAAGCGGCACAATTTGTCACAACAATTTCAC-----AAGA
ATTACAGACGTTATCATTAAGTAGTGCAAGTGTGGACCTTCACATGCTGACTGGGGAAAGCAGATGTTCTCAGTGTCTCT
TGAGTTTCATCAGTAGGCTTCCTTCTTGGTACACTTAAGATCAATGCAGTCTGATCCCAAGTTGCAGCAACTGCTGTTAT
CCGGTAACCACTATCCCACCTCTTATGGACTCCCTCACTAGGGTACAAGAAGTCCAGCTCAACAACCTGGAAAATAAATG
CATGACAAACAAGGAATGCAAA-TAAACAAAATAACTGAACTTAGCTTGACAGTGTCGAAGTAAA--CAAACACCACCAG
TGCAAATGATGA-TACCTGTTCCGAAAACCCTGCATTGCGGGACATAACAATCGCCCATTTATTTCCAGCAGTTGCCATG
GAAGTCACATAGAAACCATCACGCCATTTCTTGTTTATCCAC
>chr2A_250
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------GTTAGGGTTTC-CCTGCCTCTCGCCGGTGCCGCCGCCGGCCCGTCTCGTCTCCTATGGTCCTTGGATCATG
GAGGCGATATGGATCCCGGCCCTTGCCGGCAGGAGGGCTCCGTTTTATGTG---TTTTTT--TAGTTATATTAGGGTTTG
TGCCATGCTCAAGAACACGAGGCGGAGACGGCTTCTTGAAGATGGAATAAAGTCCTTCCTGCCTAG-TCCCCGTCCCGGC
GATGTTGCTAGGGTTGTTGGAGGGCGTGTGGAGGTGTGTCTCCGGCGGATATCGTGGGATCTGGCCGGCGTTTGTCTTCG
ATGGATCCTCTTGGATCCGGTCTTC------CTACGTCTA------TGTGTCT---GCAGGTTGGATCTTTCCGATCTAG
GATTCTCTTCATCGGTGGCGGTTGCTGCTCTGGTGTGTTAGTCCTATGGAGCCTTAGCATGACGACTTCCCGACTGTCTA
CTACAATAATATTTGCCCGGCTCCGACGAGGGAAG-GGCGATGACGGCTGTGCGCCTTCGGCTCGCTACAGTGCTTGTAG
TCGTTGCTAGGTGGTCTACGGACTTGGATGTAACT-TTT-A---CT---TCTGGTGTTCTTTGTACTACC--TTGACAAT
TGATGAATAGATTGAAAGTTTT----------------------------------------------------------
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>chr2D_252
TAGGAT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------TTTC-GCTGCCTCCCGCCGGCGGCGCCGCCGGTCTGCCTCGTCTCCTGTGGCCTTAGGGCCATC
GAGGTGCAGTGGATCCCGACCCTTGCCGGTGGGAGGGCTCTGTTTTTGGATG-TTTTTCT--GAGTTTTGTTAGGGTTTG
TGTCATGCTCAGAGAGATGAGACGGCAGCGACTCTCCGAAGATGAAATAAGGTTCTCCCCGCCTAG-GCCACATCCCGGC
GGTGCTTCTAGCTTCATCGGAGGGCGTGTGGAGCTTTGTATCCGACGGATCTCATGAGATTTGGTCGGCACTTGTCTTCG
ATGGATTCACGTGAATCCGGTCTTC------GTTCGTCTGTTTCCCCGTGTCT---ACATGTTGGATTCTTCCGATCTAC
GCTTTTCTTCATCAGTGATGGTTGCTGTTCTGGTGTGCTGGTCCTGTAGGGCCTTAACACGACAACTTCCAGACTGTCTA
CTACCACAAGGTTTGTCCAACTC---------------CGATGATGGCGGCACGCCTTCGGCTCGCTCTAGTGCTTGTAG
TCGTCCCTAGGTGGTGTACGGATCTGGATGTAATG-TTT-A---CT---TCCGGTGTTCCTTGTACTACC--TTGACAGT
TGATGAATAGATGGTGAGTTTTCCTCGCAAAAAA----------------------------------------------
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>chr2D_252
--------------------------------------------------------------------------------
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-----------TAGGGTTTCTCCTGCCTCCCGTCCGCGCCGTCGCCGGTCTACCTCGG-TTCTGTGGTCTTAGGACCATG
GAGGCGTGATGGATCCTGGTCCTTGCCGGCGGGAGGGCTTCGTTTTCTGATG-TTTTCTTTTTAGTTTTGTTCGGATTTG
TGTCCTACTCAGAGATGCGAGGTGGAAGCGGCTCTCTGCGGATGGAATAAGGTACTCCCCGCCTAG-CCCCCGTTTTGAT
GATGTTTCTAACATCGTCGGAGGGTGTGTGGAGGTTTGTCTCCGGCGGTTCTCATGAGATTTGGTGGGCGTTTGTCTTTG
GTGGATCCACGTGGATCCGGTCTTCGTTCATTTGTGTTCG------TCTGTCT---ATAGGTTGGACACTTCCGATCTAC
ACTTTTCTTCATCAGCGGCGGTTGCTATTCTGGTGCGCTGGTCCTATGGGGCCTTAGCACGACGACATCCCGACTGTCTA
CTACAACAAGGTTTGCCCGGCTTCGATGA-GGAGG-GGCGATGATGGCGGTGCGCCTTCGCCTCGCTGTAGTGCCTGTAG
TCGTCGCTAGGTGGTCTATGGGCCTGGATGTATTTTTTT-A---CT---TCTGATGTTCTTTGTACTATC--TTAACAAT
TGATGGATAGATTGGAAGTTTTTTCTTGCAAAAGAAAA------------------------------------------
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>chr5A_280
--------------------------------------------------------------------------------
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----------------------------------------GCCGCCGGTCTGCCTCATCTCCTATGGTCCTTGGAGTATG
GAGGCGCGGTGGACCCCCGCCCTTGCCGGTGGGAGGGCTCCATTTTTAGATG-CTTTTCT--GAGTTTTGTTAGGGTTTG
TGCCATGCTCAAGAAGACGAGGCGGCGGCGACTTCTTGAAGATGGAATAAGGTCCTCCCCACCTAG-CCCT-GTCCCGGT
GATGTTTCAAGCATCGTCGGAAGGTGCGTGGAGGTTTGTCTCCGATGGATCTCATGGGATCGGGTTGCCGTTGGTCTTCA
GTGGATCCGACGGGATCCGGTCTTCGTTCGTCTACGTTTG------TGTGTCT---GTAGGTTGGATCCTTCCGATCTAT
ATTTCTCTTCATCGGCGTCGGTTGCTGTTCTAATGCACTGGTCCTATGGGGCCTTAGCACGATGACTTCCCGACTGTCTA
CTACAACAATGTTTGCCCGGCTCCGACGAGGGAGG-GGCGATGATGGCGGCACGCCTTCGGCTCGCTCCAGTGCTTGTAG
TCGTCACTAGGTGGTCTATGGACCTGGATGTAAAT-TTG-A---CT---TCTAGTGTTCTTTGTACTACC--TTGACAAT
TGATGAATAGATCAAAAGTTTTCTGCAAAAAAAAGAC-------------------------------------------
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>chr1D_280
--------------------------------------------------------------------------------
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----------------------------------------GCCGCCAGTCTATCTCGTCTTCTATGGTCTTAGGGCCATG
GAAGCGCAGTGGATCCTGGCCCTTGCCGACGGGAGGGCTCCATTTTCAAATG---TTTTT--GAGTTTTGTTAGGGTTTG
TGTCCTGCTCAGAGAGGCGAGGCGGTGGAGACTCTTTGGAGATGGAATAAGATCCTCCCCGCTTAG-CCCCAATCCAGGC
CGTGTTTCTAGCATCATCGGAGGGTGTGTGGAGGTTTGTCTCCGGGGGATCTCATGGGATTCGGTCAACATTTGTCTTCG
ATGGATCTACGTGGATCCGATCTTCCCTCATCTGTGTTCA------TGTGTCT---ACAGGTTGGATCCTTCTGATCTAA
GCATCTCTCTATCAGCAGAGGTTGTTGTCCTGGTGTGTTGGCCCTATGGGGCCTTAGCATGACGACTTCCCGACTGTCTA
CTACAACAAGGTTTGTCCGACTCCGATGAGGGAGG-G-CAATGACGGCGGTGCGCCTTTGGCTTGCTCCAGTGCTTCTAG
TCGTCGCTAGGTGGTCTACGAACCTGGATGTATTT-TT-----ACT---TCTGATGTTCTTTGTACTACT--TTGACATT
TGATGAATAGATTGAAAGTTTT----------------------------------------------------------
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>chr7A_280
--------------------------------------------------------------------------------
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----------------------------------------GCCGCCGGTCCGCTTCGTCTCCTATGGTTTTAGAACCATG
AAGGCGCGGCGAATCCCGGCACTTGCCGGCGAGAGGGCTCCGTTTTTACGTTTTTTTTTT--CTGTTTTATTAGGGTTTG
TGTCATGTTCAGGAAGATGAGGCAGG-GATGATTTTTTGAAGAGGAATAAAGTTCTCCTCACCTAG-TCTC--TCCTGGT
GGTGCTTCTAGCATCTTCAGAGGGCGTGTGGAGGTGTATCTCCGACGGATCTTGTAGGATTCGGTCGGTGTTTGTCTTAG
ATGGATCCGCTTGAATCCGGTCTTTGTTCTTCTATGTCAG------TATGTCT---GCAGGTTAGATCCTTTCGATCTAC
GATTCTCTTAATCGGCGGCGGTTGCTGTTCTGGTGTGCTGGTCCTATTGGGCCTTAGCACGACGACTTCCCGACTGTCTA
CTACAACAAGATTTGTCCGACTCCGATGATGGAGGAG-CGATGACACCGGCGCGCCTTTGACTCGCTCTAGTGATTGTAG
TCGTCGCTAGATGGTCTACGGACCTAGATGTATTT-TTT-A---CT---T------------------------------
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>chr7D_280
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----------------------------------------GCCGCAGGTCCGCCTCGTCTCCGGTGGCCCTAGGGCCATG
GGGGCGCGGTGGATCCTGTCAAGGACCGGCGGGAGGGCTCCGTTGTTAGTCGTCCA-TTCA--AGATTTGTTAGGCTTTA
TGTCCTACTCGGGAAGACGAGAAGGCAGCGGCTCCCTGAAGATGGAATAAAGGTCTCCCCGCCTAG-TCCCCGTTCCGGT
GGTGCGTCTAGCATCGTTGGTGGGCGTGTGGAGGTATGTCTCGGGTGGATCT---------------------ATCCTCG
GTGGATTTGCTCGGATCTGGTTGTGGTTCGTCTATGTTCG------TGTGTCT---TCAGGTTGGATCCTTTCGATCTAC
GTTATTCTTCATCAGCGGCGGTTGCTGTTCTGGTGCACTGGTCCTACGGGGCCTTAGCACGATGACTTCCCGACTGTCTA
CTACAACAAGTTGTGCCCGACTCCGGCGAGGGTGG-GGTGATGATGGCGGCACGCCTTCGGCTCGCTTCAGTGATTGTAG
TCGTCGCTAGGTGGTCTACGGATCTAGATGTAATT-TTT-ATTATT---TCTAGTGTTCGTTGTACTACC--ATGATAGA
AGATGAATAGATTGAAAGTTTTCTCGCAAAAAAA----------------------------------------------
--------------------------------------------------------------------------------
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>chr3B_291
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GCCTCGACTCCGGTGGCCCCAGGGCCATG
GAGGCGCGGTGGATCCTGACAAGGGCCGGCGGGAGGGCTCCGTTTTTAGTCG-TTTTTTT--CAATCTCGTTAGGGTTTG
TGTCCTATTCAGGAAGGGGAGACGGCGGCGGCTCCATGAAGATGGAATAAAGGTCACCCCGCCTAG-CCCCCGTTCCGGC
GGTGCGTCTAGCATCATTGGTGGGCGTGTTGAGGTGTGTCTCCGGCAGATCT---------------------ATCTTTG
GTGGATTTGCTCGGATCTCGTCGTTGTTCGTCTACGTCTG------TGTGTCT---TCGGCTTGAATTCTTCC-ATCTAC
GTTATTTTTCATCGGCGGCGGTTGCTGTTCTGGGGTGCTGGTCCTATGGGGCCTTAGCACGACGACTTCCCGACTGTCTA
ATACAACAAGTTGTGTCCGGCTCCGGCGATGGAGG-GGCGATGATGGCGGCACGCCTTCGGCTCGCTTCGGTGCTTGTAG
TCGTCGCTAGGTGGTCTACGAATATGGATGTAATT-TTT-A---TT---TCTGATATTCGTTGTACTGCC--ATGATTGA
AGATGAATAGATTGAAAGTTTTTTCGTAAAAAAAAAAC------------------------------------------
--------------------------------------------------------------------------------
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>chr5D_317
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATG
GAGGCGCAGTGGA-CCCGTCCCTTGCCGGCGAGAGGGCTTAGTTTTTAGGTG-CTTCTTCA--AGTTCTGTTAGGGTTTG
TGCCATGCTCAGGAAGACGAGACGACAACGGATTCCTGAGGATGAAATAAGGTTCTCGCCGCCTATCCCCT-GTCCCGGT
GGTGCTTCTAGCGTCGTCGGAGGGCGTGTGGAGGTGTGTCTCCGACGGATCTCGCGGGATTCGGTCGGTGGTTGTATTTG
GTGGATTTGCTCGGATTTGGTCTTTCTTCGTCTTTGTTCA------CGTGTCT---TCAGGTTGGATTCTTCCGATCTAA
TATTCTCTTCATTGGCGGCGGTTGTTGTTCTGGTGCGTTGGTCCTATAGGGCCTTGGCAGAACGACTTTCCGACTGTCTA
CTACAACAAGTTGTACCTGACTCCGGCGAGGGAGGGG-CGACAATGGC-GTGCACCTTCAGCTCGTTTCAGTGCTTGTAG
TCGTCGCTAGGTGGTCTATGAATCTGGATGTAATT-TTT-A---TTATTTCAGGTGTTCGTTGTACTGCC--ATGATTGA
AGATGAATAGATCAAAAGTTTCTTGCAAAAAAAA----------------------------------------------
--------------------------------------------------------------------------------
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>chr1D_386
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------TAGGGATTG
TGTCCTGCTCGAAGAGGAGAGGCGACAGTTGCTCTTTGAAGATGGAATAAGATTCTCCCTGCCTAG-TCCTCGTCCCGGT
GGTGTTTCTAGCATCGTCGGAGGGTGTGTGGAGGTTTGTCTCTGGCGGATCTTGCGGGATTCGGTCGGCATTTATCTTTG
GTGGATCCACATGGATCATGTCTTCGTTCGTCTATGTTTG------TGTGTCT---ACAGGTTGGATCCTTCCGATCTAC
GCTTCTCTTCATCAGCTACGGTTGCTGTTTTTGTGTGCTTGTCCTATGGGGCCTTAGCACGACAACTTCTCGACTGTCTG
ATACAACAAGGTTTGCACGTCTCCGATGAGGGAGGGG-CGAAGACGACAACATGCCTTCGGCTCGCTCCAGTGCTAGTAG
TCGTCGTTAGGTGGTCTACGGACCTAGTTGTATTT-TTTTA---CT---TCTAGTGTTATTGGTACTACC--TTGACAGT
TGATGAATAGATAGAAAATTATTCTCGCAAAAAAAACAGCAG--------------------------------------
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>chr3B_1049
--------------------------------------------------------------------------------
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---------------------------------------------------CCTGACTGAAACGCCATGGAGCGACAGGA
CGCTGAGCAGGCCTTCATTTAAAGCAGTTG--------AAAGAGAGCAAAGCACTTTGTCGTCCGAGGAACATCTTTAAC
AGAACGCGGAAGGATATTGAGACAGTACACAACACACAGCACAGACTGTTCCCTAGTATGGCTCGTCTGACACAATGATG
TACTCCCTCCATTCCACAATGTAGTGCTTCCTCTATCTACGTGCTTCAACTTTGACCGTAAATTTAACTATCAAGACCGA
TTGCGGCGGGAGCAAAAATTATATCAGTGAATTCGTATTCGAAAGAAGTTTTCAATTATATAATTTTTTCTCCCGCCGCA
GTTGGTCTCGTTGGTTAAATTTATGGTCAAAGTTGGACCTCGGGAAGCGCGGGCGCACTATATTTTGGAATGGAGGGAGT
ACGTACCTAGCATCATTGCACCACCTTCTCTTTGGAGCTGGCAATCTGGTTTCTCATCTCTGCCACAAAGAAAAGGAAGC
TTCACACTCTGTC-CCTACAACAAG--------GGAAGGGCTCAAGCTGGGCGCCTACAAATAATCTCCTGAGCACCTGT
ACAAACATGGCGCAGTGTCTCTCCCCATGGCATGGACAACCATACGTGTAAGTTCGAGCAGCCGGAACTAATCCAATAAG
CATACATACATCGATTGACCACC---------------------------------------------------------
GTTGCCATGGCTGCTGCGTCCTTCGCTACCTACCTCGAGACGCCTAGAGAGCTCCGGGTGCTGGGGTTCCGGGCGCCGCC
CCCGTCTCCGGTCACCGGCGTTCTATCCAACGGTGGCTCTGGATCCCCTGAGTACGGCGAGTGCCCCGACGGCAACGAAG
ATGACGAGGTCGGCAGGTTCCTGCGTCGCTCCGCCAGGGTCCTGGTGCTGCGGCTGCCCGAGAGGGCCATCCCACGGAAG
AAGAAGAAGAAGAGTGATAAGGCGGTGTGGGCTCCCCCAGTCATCGACATGCGCCTGCTGGCCTCGCTGG------GTGG
GCCGGCGGTGGAGGCTCTGAGGTCGGCGGCCGTCGCGCTTGGCTGCTTCCAGGTGGTTGGGCATGGGGTCAATGAGTGCT
TGGTCTCAGCTGCGGCGGGGAGGGCGAGTTCGCCTACGCCGGAGGAGGCCGGTGGAGAAGA---------TGGTGAGGAG
CTGTGGTGGTCACCGAGCGAAGGAGACCAGTTGAGGTGCCAACTTGCCCATTTCATTGGAAGGCAACTAATCAAAGGACT
CTATATGATGCTAACCCCTGGTTTTGCTGTGTCCAGGAAGGGAGCAGACGATCTGTTCACCCAGCTGGAGCAAACCGCAG
CCAAACTCATGGACGCCCTGCGGCGGGACAGCGTTGGCGCCACCGATTCCCTGGCCGGAGCTGACACGAACCGCTCGCAA
CTCTGCATCCGCACGCACCACCGCCGGCAGTGCGATGGCGGCAGCGGCTCTGTTGGCCCCATCACTATCAGCGAGGACGA
CATGCTCAGGATGCTGATCAAGAGCTCACGCCGCCCACGGGCTCTCGCTCTCCACCTCTGCCCCGGCGCCTCCACGTTCC
ACGTCTTCTCCCGGCAGCGGGGATGGTCCAGGTTCCGCCCCCTCGGCGGCGCCGTCGTGGTCACCGTCGGAGACCAGCTT
CAGGTGACGCACCAA--TCTTGAGCGTGACCTTTTTTTGAGACGAAAACCGACTGACCTTGCAAATGCACGCTGCATCAT
CA---CAATCATACATTGTCTTACGGTTTACCTGCTTCGCGCTCCACGTATGCAGGCATGGAGCAGTGGACTCTACAAGA
GCGTGGCCGGGAAACCGGCTTACAGCAACGACGATCTCGGAGCAGACCGCGGCTGTGATGTCGTCATCTCGGCGGAGTAC
CTCCACTCCTGCTCTTCGGCTGGCATGGAGA---ACGAGCCCCCGGACGCGGATGCCGGGAAGATCATTCAGTTGAATGT
GCAGATCATTGTAGCAGCTTGCCTTGTACTCCTTTACGGCAAAAACAACATATTTGACATGTGACCGAAATTAATTCACG
AAATAAACTGTCCTTAAAAAAATTTCACACCTCCGACCCTATCATGTAGCGCCCGACAGCCAGGCGCCACACTGCACTGT
GCAGCGTCTGAACGTAAGGCGCTACACACCTAACAAGCGTCGCACCTCGGACTGCCTGAAAATTGCTAAGTTAGTATGCA
ACGCCTAAAAGCTAGGCGTCACACTATACAGTGTAACGCCTAGCATCTAGGCGTTGCATGTACCACCTACACGTTCGCCT
TTCGCAACAGTTGCATGCATGTGCCTACGCCTCATCACATGTACACTGCTCCATAGTCCAGTGGACCTTTGATTGCACCG
ATCGATTGACCACCAGGCCATGCAAAAGCGGAGGCCGATTAACCAACACGGGTGGGTCGGACACATGCATGTGAGCGCGC
TTGCATCGGAGAAATCACCATGCACCCCGGCCGGCCTTACGTACGTGCGGGAACGTCAACCACACGATCCAGCGGGCGTT
TGACTGACCAGATCGATTGATTACCAAGCCATGCAGAAGCGGGGGCGATTAGTCAACACCGGCGGCTCGGACACATGCAT
GCGGGGGAAATCACTAGTGGCCACTAGTGCAACGCCTAGTCTCTCAGTCGTTGCACACTGACTTAGTAATTTTCAAACTG
CTCGAGGTGCGATGCTTGCCAGGTATGTAGCGCCTTTCAGTCAGGCGCCGCATAGTATAGTGTGGCGCCTAGTTGTCGGG
CGCTACACGAAAAGGTCAGCGGAGCGAATTTTTTTTAAGAACGGTTCATTTTATGAATTCTTTTTGACCACAGGTCAAAT
TTGTCATTTCTGCCCTCCTTTACCACTTTCTCCTATCATGCTTGTGTACCATTTGGTCTTGAGAGGCTGCAGCAGGACAT
GTTGCCCTGAAAATGCAGCTC----TTTACTTCAAGTTCAGCTCGACTTGTGGAAATGGAACCAGCGTGTCAGTTTGGGT
GAGAATATGAGCATGTTGGTTTGATGCCAAAAATTAGCATGCCAAATAGTGGCTAGTGCTTGATTGGTTACCAAGTTTAC
TTGCCAACCTCACAAGAAGTTACCAATTTTTGGCAACTTTTGATATTGCCAATTGTTGGCAATGCCAAATGTTGGCATCA
GACCAATTATCCTCTATTATTTAGCACCC-----AAAGGATAGGGTAGGAAGCGAGAACCTCGTTGGGGCTCTC------
--ACGCGACCACACAGGAGCACAAAACA-TTAAGTCAGGTGTTTACACATCTAAGTATCACCTTACACTAGAGTCAAGAG
TCGTCCGCTACAGAAAGGATTAACACGACTACAAAACATTTACTACTGTACACACTATTTTTCTATAATTAACAGCGACA
GGCAGAAACATCTTCACAAGAACACACTAGGCCGCATTCACAAC-TTGCCCACAAACAGAAAACTACTGCTGAGCTGGAT
CAAAAAGATGAGGTTAACTCACGCTTCAGCTCTCATGGCAAAGGATTTCTACGATACGGTACGCCCATAACATACTGAAG
CAAGGTAGAGATTCTTGGACCATTTCTCCTGCAATGACACAA--GGGCACAATTTGTCACAAGAATTTCACAAGATAAGA
ATTACAGACGTTATCATTAAGTAGTGCAAGTGTGGACCTTCACATGCTGACTGGGGAAAGCAGATGTTCTCAGTGTCTCT
TGAGTTTCATCAGTAGGCTTCCTTCTTGGTACACTTAAGATCAATGCAGTCTGATCCCAAGTCGCAGCAACTGCTGTTAT
TCGGTAACCACTATCCCACCTCTTATGGACTCCCTCACTAGGGTACAAGAAGTCCAGCTCAACAACCTGGAAAATAAATG
CATGACAAACAAGGAATGCAAAATAAACAAAATAACTGAACTTAGCTTGGCAGTGTCGAAGTAAA--CAAACACCACCAG
TGCAAATGATGA-TACCTGTTCCGAAAACCCTGCATTGCGGGACATAACAATCGCCCATTTATTCCCAGCAGTTGCCATG
GAAGTCACATAGAAACCATCACGCCATTTCTTGTTTATCCAC
>chr3A_1072
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACAGGA
CGCTGAGCAGGCCTTCATTTAAAGCAGTTCAATTGTTCAAAGAGAGCAAAGCACTTTGTCGTCCGAGGAACATCTTTAAC
AGAACGCGGAAGGATATTTAGACAG--------------CACAGACTGTTCCCTAGTATGGCTCATCTGACACAATGATG
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AGCATCATTGCACCATCTTCTCTTTCGAGCTGGCAATCTG--------------CCACAGAGAAAAGGAAGC
TTCACACTCTGTC-CCTACAACAAAGCCAGGACGGAAGAGCTCGAGCTGGG----------------------CACTTGT
ACAAATATGGCGCAATGTATTTCTCCATGGCATTGCC--------------------------------AATCCAAGAAG
CATATATACATTGATTGACCACCTGGTCACTGCATCCGTCGCTACTGGAGTACCTATCTTGAGCTGCCTAGAGGGCTCCG
GGTGCGATGGCTGCTGCATCCTTCGTTACCTACCTCGAGACGCCTAGAGAGTTCCGGCTGCTGGGGTTCCGGGCGCCGCC
GCCGTCTCCGGTCACCGGCGTTGTGACAAACGGTGGCTCTGGATCACCTGAGTACGGTGAGTGCCCCGACGGCAACGAAG
ATGACGAGGTCGGCAGGTTCCTGCGTCGCTCCGCCAAGGTCCCGGTGCTGCGGCTGCCGGAGAGGGCCATCCCGCGGAAG
AAGAAGAG------TGATAAGGCGGCGTGGGCTCCCCCAGTCATCGACATGCGCCTGCTGGACACGCCGGATGGCAGTGG
TCCGGTGGTGGAGGCTCTGAGGTCGGCGGCCGTCGCGTTTGGCTGCTTCCAGGTGGTTGGCCATGGGGTCAATTTGTGCC
TGGTCTCTGCTGCGGCGGGGAGGGCGAGTTCGCCTACGCCGGAGGAGGCCGGTGGAGAAGA---------TGGTGAGGAG
CTGTGGTGGTCACCAAGCGAAGGAGACCAGTTGAGGTGCGAACTTGCCCATTTCGTCGGAAGGCAACTAATCAAAGGACT
CTATATGATGCTAACCCCTGGTTTTGCCGTGTCCAGGAACGGGGCAGCCGATCTGTTCACCCAGCTGGAGCAAACCGCAG
CCAAACTGGTGGATGCCTTGCAGCGGGACAGCGTTGGCGCCACCA------TGGTCAGAGCTGACAGGAACGGCTCGCAA
CTCTGCATCCGCACGCACCACGGCCGGCAGTGCGATATC---------------GGCCCTATCACTATCAGCCAGGACGA
CATCCTGAGGATGCTGATCAAGAGCTCGCGCTGCCCGCGTGCTCTCGCTCTCCACCTCTGCCCCGGCGCCTCCACGTTCC
ACGTCTTCTCCCGGCAGCGGGGATGGTCCAGGTTCCGCCCCCTCGGTGGCGCCGTCGTGGTCACCGTCGGAGACCAGCTT
CAGGTGACGCACCAGTCTCTTGAGCGTGACCCTTTTTTCAGACGAAATCTGGCCGATCTTACAAATGCACGCTGCATCAT
CATCACAATCGTACATTGCCTTCCGGTTTACCTGCTTCGCTCTCCACATATGCAGGCATGCAGCAGTGGACTCTACAAGA
GCGTGGCCGGGAAACCGGCTTACAGCGACGGCGATCTCCGAGCAGAACGCGGCTGCGACGTCGTC---TCGGCGGAGTAC
CTCCACACCTGCTCTTCGGCTAGCATGGAGAG---CGAGCCCCTGGACGCGGATGCCGGGAAGACCATTCAGTTGAATGT
GCAGATCATTGTAGCAGCTTGCCTTGTGCTCCTTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------ACTACTTTCTCCTGTCATGCTTGTATACGATTTGGTCTTGAGAAGCTGCAGCAGAACTT
GTTGCCCTGAAAATGCAGCTCGGTTTTTATTTCAAGTTCAGCTCGGCTTTTGGAAATGGAATTGGTGTGTCAGTTTTGGC
GAGAATATTACTCCCTCTATAAACTAATATAAGAGCGTTTAGATTACTACTTTAGTATTCTAAACGCTCTTATATTAGTT
TACGGAGGGAG---------------------------------------------------------------------
-----------------TATTTAGCACGGGACCAAAAGGATAGGGTAGGAAGCAAGAACCTCTTTGGGGCTCTCACACGA
CCACACGACCAGACAGAAGCACGAAACATTTAAGTCAGGTGTTTAAACATCTAAGTATCACCTTACACTACAGTCAAGAG
TCGTCTGCTACACAAA-GATTAACACGACTACAAAACATTTACTACTGTACACTATG---TTCTATAATTAACAGCGACA
AGCAGAAACATCTTCACAAGAACACGCTAGGCCGCATTCAGAACTTTGCCCACAAACACGAAACTACCACTGAGCTGGAT
CAAAAAGATGAGGCAAACCCGCACTTCAGCCCTCATGGCAAAAGATTTCTACGATACGGTACGCCCATAACATACTGAAG
CAAGGTAGAGATTCTTGGACCATTTCTCCTGCAATGACACAAAAGGGCACAATTTGTCACAACAATTTCACAAGATAAGA
ATTACAGACGTTATCAGTAAGTAGTGCAAGTGTGGACCTTCACATGCTGACTGGGGAAAGCAGATGTTCTCAGCGTCTCT
TGGGTTTCATCGGTAGGCTTCCTTCTTGGTACACTTAAGATCAATGCAGTCTGATCCCAAGTCGCAGCAACTGCTGTTAT
CCGGTAACCACAGTCCCACCTCTTATGGACTCCCTCACTAGGGTACAAGAAGTCCAGCTCAACAACCTGGAAAATAAATG
CATGACAAACAAGGAATGCAAAATAAATAAATAAAATGAACTTAGCTTGGCAGTGTCCAAGTAAAGACAAACACAACCGG
TGCAAATGGTGATTACCTGTTCGGAAAACCCTGCATTGCGAGACATAACAATCGCCCACTTATTCCCCGCAGTTGCCATG
GAAGTCACATAGAAACCATCACGCCATTTCTTGTTTATCCAC
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----------SS--S--S--S-----S---S-----------------S----------------------
---S----------S-----------S------------------------S-----------------SS---------
---------------------S-----------------------------S-----S----------------------
--------------------------------------------S-----S-------------------------S---
------------S------------------------------------S-SSSSS--S--------S------------
--------------S------------------------------S--S-S-------------------------S---
----S---------------------------------------------------------------------------
---------S------------------------------S---------S-------S----------SSS-----S--
----------S---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------S--------------
---------S--------------------------------S-------------------------------------
----------------------S-----------S----------------S---S-SSS-SS---S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-------------S---------------------------------S--------------------------------
------------------------------------------------------S--------S-----------S----
--S------S----------------------------------------------------------------------
------------S-------------SS----------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S----------------------------------------S-------------
------------------------------------------------------------------------SS-S----
--SS---------S-S----------------------------------------------------------------
-------------------------------------------------------------SSSSSSSSS----------
--------------------------------------------------------------------------------
-S-----------------------------S------------------------------------------------
-S----------------------------------------------------------------------------SS
-----------------------------------------S-------------------------------------S
--------------------------------------------------------------------------------
----------S------------S--------------------------------------------------------
-------------------------------------SSSS--SS--S--S----S---------------S--------
-----------------------S-------S-S----------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------SS-------------------------S--------------------
---------S--S-------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S---------------------------------S---
----------SS---------------------------------------------S--S---------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
-----S-----------------S--------------------SS-----------------------S----------
----------------------------------------------------------------------------S---
-----------------------------------------------------S--------------------------
----------------------S---------S---------------------------------------S-------
-------------------------------------------SS-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
----------------------------------------------------------------S---------------
------------------------------------------
>forward_69
-------------------------------------------------ACCAATACAGCACCTCACGG-----------
--------------------------------------------------------------------------------
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------------------------------------------
>reverse_1057
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TCACAAACTTGCCTCCCCTG--------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------
>forward_85
-----------------------------------------------------------------ACGGACTGAGTTGCC
AACAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1058
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CACAAACTTGCCTCCCCTGA-------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>forward_199
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CTGCTCGTGCGTACTCAACT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------
>reverse_2309
--------------------------------------------------------------------------------
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--------------------------------------------------------------------GATGGTGAGGAG
CTGTGGTG------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_1648
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----------------------------ACAAGGGAAGAGCTCAAGCC--------------------------------
--------------------------------------------------------------------------------
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>reverse_2914
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---------------------------------TCTTCGCTCTCCACGTATGC---------------------------
--------------------------------------------------------------------------------
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>forward_2640
--------------------------------------------------------------------------------
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------------------------------------------------------------ATCACTATCAGCCAGGACGC
--------------------------------------------------------------------------------
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>reverse_5185
--------------------------------------------------------------------------------
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----------------------------------------------------------------TCCAGCAGTTGCCATG
GAAG--------------------------------------
