>input_sequence_44330
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-------------------------------------------------------ATGGGTGGCTACGGCGACTTGTTCG
AGAAGGCCAAGCCCTACATCGCCATGATCTGCTTGCAGTTCGGCTATGCCGGCATGAACGTCATCACCAAGGTCTCGCTC
AACGGCGGCATGAGCCACTACGTGCTCGTCGTGTACCGCCACGCCTTCGCCACCGTCTCCATCGCGCCATTTGCCCTAAT
TCTCGAGAGGTA----TACGTAT---------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTAGACACGAACGATCCATGGACGAGCTAGGGCCGACCAGATAGT
GTGCATGCATTTTCTTCTTCTTTGCTACATGCATGGTTCACTGGCCTGAATTGAAACTGATGGTACGATGAACTTGATC-
TGAAATGGCAGAAAGGTGAGGCCGAAGATGACGTGGTCGTCCTTCCTCCAGATCTTCGTGCTGGCACTGCTCGGGTTAGT
TCTCCTGTCATTTTGT-------GCACCCAGCCTAAGTACTTTAAGAACGATGACATGAGTGGACACTCCAATACGGGGA
CTCGACTCTTTTGTCAAGAAACAAAAGGTGTCCGCCAAATGTTCC-TTTTTACAGCAGCTAGCTGCATGTACGCCAATTT
------TTTTTTTGTCAGCTTTCCTGAAATACCAAT-----------GCTAATGAACCTTATGCATGTTGTTGA------
----------------------------TTACTGCAGGCCTGTGATTGACCAGAACTTCTACTATGTGGGTCTCAAGTAC
ACCGGCCCGACCTTCGCATGCGCCATGAGCAACATCCTTCCCGCCATGACCTTCGTGATGGCCTTCATCTTCAGGTA---
---------------------------------------TATAC-------ATGCATGATG--CATGCGTCTCTTCTGG-
--GAATCTGAGATGAATATTAGCGTGACCGCGCCGTTGGAGCTAGCAAAACATTATTTGACATCTTTTGGATGGTGTCCG
AAAAT-ATCATAGGATGGAGAAGGTGGACCTGAGAAATTTGCGGTGCCAGGCGAAGGTGGCGGGGACGGTGGTGACGGTG
GCCGGCGCGATGCTGATGACGCTCTACAAAGGCCCGCTGATGCGGATGGCGTGGACGA---GCCACGGACAGGCCCACGG
CGGCGAGGCCCCGGC---------CGTCGATCCCACGGGCAGGGAGTGGTTCCTCGGCTCGCTCTTCATCATCATCGCCA
CCCTCGCCTGGGCCTCGCTCTTCATCCTCCAGGCTCACACCCTGAAGCAGTACTCGGCGCCGCTCTCCCTCACCACGCTC
ATCTGCTTCGTCGGCACCCTCCAGGCCATCGTCGTCACCTTGGCCATGGAGCACCGCCCCTCCGTCTGGACCATAGGCTT
CGACATGAACCTCCTCGCCGCCGCATACGCCGTCAGTACACTTCTCTGCTCACCAC--GCATGCGTCTTGTC---TCCTC
A-------------GCCAAATCTCATAGTA-------TATCGTATGACTGATGTTGCAGGGCATCGTGACATCGAGCATA
GCGTACTACGTGCAAGGCCTGGTGATCCAGAAGACCGGGCCGGTGTTCGCCTCGGCGTTCAGCCCACTGATGATGATCGT
GGTGGCCGTGATGGGCTCCTTCATCCTCTCCGAGAAGATATACCTGGGGGGCGTCCTCGGCTCCGTCCTCATCGTCATCG
GGCTCTACTCCGTGCTCTGGGGAAAGCACAAGGAGACCCAGGCGGAGTCCGCGGCCCTGCGGGAGGCGCTGCCTATGGCC
ATGGCCTCCTACACCTCCAAGGTGACCGGAGACGCCGCGTCGGCCGGACACGATCCGGAGTGCGAGAAAGCCAACGGAGC
AGCCAAGCCATCCTCCAACGGACACGGAGCTAGTGCAGTCTGA-------------------------------------
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------------------------------------
>chr3D_1_TraesCS3D01G325400
TTCGAATTAGTTGCATGTTACTACATGTGTTACCCAATTTTCTGACCGTTCTGATTTTTTGTAAATTTAGGGTTTAGGGT
TGAAAACAATATTGTAACCCGACATTTTTATTATTCAACAATGCCAAGCAAAACTACTGAACAAATTGGTTAGAAAAA-C
AAAATAAAAACACGAGGTCGTCTGAAATGAGTCTGCCTTC-CGGCAAACTCTCCAGAAACCTACCGAATGTCAT------
---------------------------------------------------------TTTTGGTGAAAGCTTACAAAACA
TAACATAAATTCAAGCATCAAATTAGC-----------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------TAACACGAAAAACGTCACAGTATCT
TTCTGTTTGGCAACCACTAGCTGGCCACTGGCAATTGTTTCTGGAACTGCAGGGGTGGCAATCAACCAAGCATGTATGCT
--TAGTTACAAAATCAAGGTTGCAGAACACTGTTCTTCGTGACATTGGAAAGACATGTGATGATTTCTTTGCCTTCCAAC
ACGTAACATTTGCTTCCCACTCTCATGTCAAATAGGACAAAAATTGATGGTTTGAGACCTACGACGTGTGATGCTACAGC
ACTACCCCAACCAGAGAAGCCGTTGAGATCTCCTTGTTCACCAGGTGGTCTTCATTTGCTTCCAGAAACCCATCAGCTGG
ATAGCACCAGATTAACATGGCAGAAGGTAATGAGAGTGTCCTCCTTCGACTGACAGATGATCCCAACAATGCGTCCAATG
AAGCCACTCGGTCGTGGACATGGCATACGTCTGCACCGAAATGCTTTACTGGGAAGCAGGAAGAAGAGAGCAAATAATTG
CTTTTAATAATGCCCGGAATGCCCCTACGGCGTGCATATAAATCCAGCAGGGAGCTCTGCATATTTCCTTCAACTCAAGG
TCTAGCTTGGCCTCTCTTGCTCCTTGAGTTCCCTAACCAGAAGCTTCTAGGCTTTAGCCTCTAGCCCTAGCTAACTTATC
CTCTAGTTAACCAAGGCTTTTGCAGCCAGCAAGAAGTACCATCTATATCATCACCATGGGTGGCTACGGCGACTTGTTCG
AGAAGGCCAAGCCCTACATCGCCATGATCTGCTTGCAGTTCGGCTATGCCGGCATGAACGTCATCACCAAGGTCTCGCTC
AACGGCGGCATGAGCCACTACGTGCTCGTCGTGTACCGCCACGCCTTCGCCACCGTCTCCATCGCGCCATTTGCCCTAAT
TCTCGAGAGGTA----TACGTAT---------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTAGACACGAACGATCCATGGACGAGCTAGGGCCGACCAGATAGT
GTGCATGCATTTTCTTCTTCTTTGCTACATGCATGGTTCACTGGCCTGAATTGAAACTGATGGTACGATGAACTTGATC-
TGAAATGGCAGAAAGGTGAGGCCGAAGATGACGTGGTCGTCCTTCCTCCAGATCTTCGTGCTGGCACTGCTCGGGTTAGT
TCTCCTGTCATTTTGT-------GCACCCAGCCTAAGTACTTTAAGAACGATGACATGAGTGGACACTCCAATACGGGGA
CTCGACTCTTTTGTCAAGAAACAAAAGGTGTCCGCCAAATGTTCC-TTTTTACAGCAGCTAGCTGCATGTACGCCAATTT
------TTTTTTTGTCAGCTTTCCTGAAATACCAAT-----------GCTAATGAACCTTATGCATGTTGTTGA------
----------------------------TTACTGCAGGCCTGTGATTGACCAGAACTTCTACTATGTGGGTCTCAAGTAC
ACCGGCCCGACCTTCGCATGCGCCATGAGCAACATCCTTCCCGCCATGACCTTCGTGATGGCCTTCATCTTCAGGTA---
---------------------------------------TATAC-------ATGCATGATG--CATGCGTCTCTTCTGG-
--GAATCTGAGATGAATATTAGCGTGACCGCGCCGTTGGAGCTAGCAAAACATTATTTGACATCTTTTGGATGGTGTCCG
AAAAT-ATCATAGGATGGAGAAGGTGGACCTGAGAAATTTGCGGTGCCAGGCGAAGGTGGCGGGGACGGTGGTGACGGTG
GCCGGCGCGATGCTGATGACGCTCTACAAAGGCCCGCTGATGCGGATGGCGTGGACGA---GCCACGGACAGGCCCACGG
CGGCGAGGCCCCGGC---------CGTCGATCCCACGGGCAGGGAGTGGTTCCTCGGCTCGCTCTTCATCATCATCGCCA
CCCTCGCCTGGGCCTCGCTCTTCATCCTCCAGGCTCACACCCTGAAGCAGTACTCGGCGCCGCTCTCCCTCACCACGCTC
ATCTGCTTCGTCGGCACCCTCCAGGCCATCGTCGTCACCTTGGCCATGGAGCACCGCCCCTCCGTCTGGACCATAGGCTT
CGACATGAACCTCCTCGCCGCCGCATACGCCGTCAGTACACTTCTCTGCTCACCAC--GCATGCGTCTTGTC---TCCTC
A-------------GCCAAATCTCATAGTA-------TATCGTATGACTGATGTTGCAGGGCATCGTGACATCGAGCATA
GCGTACTACGTGCAAGGCCTGGTGATCCAGAAGACCGGGCCGGTGTTCGCCTCGGCGTTCAGCCCACTGATGATGATCGT
GGTGGCCGTGATGGGCTCCTTCATCCTCTCCGAGAAGATATACCTGGGGGGCGTCCTCGGCTCCGTCCTCATCGTCATCG
GGCTCTACTCCGTGCTCTGGGGAAAGCACAAGGAGACCCAGGCGGAGTCCGCGGCCCTGCGGGAGGCGCTGCCTATGGCC
ATGGCCTCCTACACCTCCAAGGTGACCGGAGACGCCGCGTCGGCCGGACACGATCCGGAGTGCGAGAAAGCCAACGGAGC
AGCCAAGCCATCCTCCAACGGACACGGAGCTAGTGCAGTCTGATCAATCGATTCCAACTGCTTCCAAGTGCTAACTGC--
---------------------AAATGTCTCGTCACTGACGTTGCATGCACTAGGGCCGTGTGCGCTGCATGCAAGGGGAG
AGTGGAATAATTTTGCGCCGTGCCTTTTATTTTTGTCCTCTTGTATGATTTCCACAACCAACGACTATAGTACTCCAGTA
CGCCTTGTATTTTTCT-----TCTTCTTTTTTTTATCGGGGGAGAAAGAAATGTTGTGCTCCGGCAA-GGGGCATGTACC
GATGTACGTGTTGGTGTAAGAGAATTTTGAGTGTTTTTGTGATCCCGGCTTAATTTCGAAATAAATATCAGTTTGGAAAA
A-GTAGTTCAATTCTGTGATAAATATCAGCGGGTTGTGACAACATCTAGGGTTCCTCAAATCATGAAATATCTCACGTCG
GGTAATTGACAAACTTGAAAGGCAAAATCCTTTATGGTGAAATTCGCGTGGTATAGCCCGAAAGAATTGAAGGTTTTTGG
AACTGAACGAAGCAGCTCGCTCGCGTCGCTCCCAGGGGGGCGGCACGGGCGAAACCTA---GCCGCCGCCGCCCCCGTTT
TCCTCACCTCCACCCCAGCTCCCCTCGCCGCCGCCAGGTGAATCCGACGGGCAAAGCCCGCTCGGCATTCGGCGGCGGCG
GGGACTTCTCCTCGCGAGACGCGTAGCGGCGGCCCTGGACGACGCGAGGCGACTGGCGGCGGCGGCGGCGTCTCGCCGGC
GCAGGCAAGCCGGGGCGGCGGCCCCGGGCATGGTGGCGGCGCCGCTCTCTCCTCTCCTCCCTCCCTGTGGGTCGTGAGGG
GTGGTGCTGGGCCAGCCGCCGCGGATCTGGCGCTAGGAGGCTGGATCCGTCCGTGGGGCTGCCCAGGCGTGTGGCTCCGG
TGGCTGCACGTCCGGCTGGTTGAGCTGCGGTGGTGGCGGTGTGCTGCAGCTCCTGGATGGCGGCGCGGCGGCGCCGCGTA
GGTGGATGTGCTGCGGCGGTCGTGGGGAGTGGTCCC
>chr3A_1
TTCAAATTATTTGTGTGTTACTACATGTGTTATCAAATTTTCTGATCATTCCGA-TTTTTGTAAATTTATGGTTTAGGGT
TGAAAAAAATATTGTAACCCGGCATTTTTATTATTCAACAATGCCAAGCAAAACTACTGAACAAATTGGTTAGAAAAAAC
AAAATAAAAACACAAGGTCGTCTGAAATGAGTCTGCCTTTGCGGCAGACTCTCCAGAAAACTACCGCACTCTCCAAAAAA
CTACCACATGCCATTTTTGGTGAAAGCTTACCGAAAAAGGTTTTTTTACCCAAAAAGTTTTGGTGAAAGCTTACAAAACA
--ACATAAATTCAAGCATCAAATTAAAACAACAACAAACACAACAACGAAGCCTTTAGTCTCAAACAAGTTGGGATAGGC
TAAAGGTGAAACCCATAAAATCTCGCGACCAACTCATGGTTCTGGCACATGGATAGCAAGCTTCCACGCATCCTTGTCCA
TAGCTAGTTCTTTGTTGATACTCCAGTCCTTCAGATCTCTTTTTACGGACTCGTCCCATGTCAAATTCGGTCTACTCCGA
CCTCTCTTGACATTACCCGCACGCTTTAGCCGTCCTCTATGCACTGGAGCTTCTGGAGGCATGCGCTGAATATGTCCAAA
CCATCTCAGACAATGGTGGACAAACTTCTCTTTTATTGATGCTACCCCAACTCTATCTCGTATATCATCATCTCGGACTC
GATCCTTCCTCGTGTGGCCACACATCCACCTCAACATGCGCATCTCCGCCACACCTAAGTGTTGAACATGTCGCCTTTTA
GTCGGCCAACACTCAGCGCCATACAACATCGCGGGTTGAACCGCCGTCCTGTAGTTAACACGAAAAACGTCACAGTACCT
TTCTGTTTGGCAACCACTAGCTGGCCACTAGAAATTGTTTCTGGAACCAC-GGGGTGGCAATCAACCAAGCATGTATGCT
TATAGTTACAAAACCAAGGTTGTAGAACACTGTTCTTCGTGACATTGGAAAGACATGTGATGATTTCTTTGCCTTCCAAT
ACGTAACACTTGCTTCCCACTCTCATATCAAATATGACCAAATTTGATGGTTTGA-ACCTACGACGTATGATGCTACAGC
ACTACCCCCACCACAGAAGCCGTTGAGATCTCCTTGTTCGCCAGGTGGTCTTCATTTGCTTCCAGAAACCCATCGGCTGG
ATAGCACCAGATTAACATGGCAGAACGTAAT--GAGTGTCCTCCTTCGACTGACAGATGATCCCAACAATGCATCCAATG
AAGCCACTCGGTCGTGGACATGGCATACGTCTGCACCGAAATGCTTTACTCGGAAGCAGGAAGAAGAGAGCAAATAATTG
CTTTAAATAATGCCCGGAATGCCCCTACGGCGAGCATATAAATCCAGCAGGGAGCTCTGCATATTTCCTTCAACTCAAGG
TCTTGCTTGGTCTCTCTTGCTCCTTGAGTTCCCTATCCAGAAGCTTCTAGGCTTTAGCCTCTAGCTCTAGCTAACTTATC
TTCTACTTAACCAAGGC-TTTGCAGCCAGCAAGAAGTACCATATATATCATCACCATGGGTGGCTACGGCGACTTGTTCG
AGAAGGCCAAGCCTTACATCGCCATGATCTGCCTGCAGTTCGGCTACGCCGGCATGAACGTCATCACCAAGGTCTCGCTC
AACGGCGGCATGAGCCACTACGTGCTCGTCGTGTACCGCCACGCCTTCGCCACCGTCTCCATCGCGCCATTTGCCCTAAT
TTTCGAGAGGTA----T---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTAGACACGAACGATCCATGGACGAGCTAGGGCCGACCAGATAGT
GTGCATGCATTTTCTTCTTCTTTGCTACATGCATGGTTCACTAGCCTGAATTGAAACTAATGGTACGATGAACTTGATC-
TGAAATGACAGAAAGGTGAGGCCGAAGATGACGTGGTCGTCCTTCCTCCAGATCTTCGTGCTGGCACTTCTCGGGTTAGT
TCTCCTGTCATTTTGACTTTTGAGCACCCAGCCTAAGTACTTTAAGAAGGGAGACATAAGTGGACACTCCAATATGGAGA
CTTACC-CTTTTGTCAAGAAACAAAAGGTGTCCGCCAAATGTTCTTTTTTTCCAGCAGCTAGCTGCATGTACGCCA-TTT
------TTTTTTTGTCAGCTTGCCTGATATACTAACGTGTAACATGAGCTA---AACCCTATGCATGTTGTCGA------
----------------------------TTACTGCAGGCCTGTGATCGACCAGAACTTCTACTATGTGGGTCTCAAGTAC
ACTGGCCCGACCTTCGCATGCGCCATGAGCAACATCCTTCCAGCCATGACCTTCGTGATGGCCTTCATCTTCAGGTA---
---------------------------------------TATACTCCGTACATGCATGATG--CATGCATCTCTTCTGA-
--GAATCTGAGATGAATACTAGCGTGATCGCGACGTTGGAGCTAGCAAAACATTTTTTGACATTTTTTGGATTGTGTCCG
AAAAAAATCATAGGATGGAGAAGGTGGACCTGAGAAAGGTGCGGTGCCAGGCGAAGGTGGCCGGGACGGTGGTGACGGTG
GCCGGCGCGATGCTGATGACGCTCTACAAGGGCCCGCTGATGCGGATGGCGTGGACGA---GCCACGGACAGGCCCACGG
CGGCGAGGCCCCGGC---------CGTCGATCCCACGGGCAGGGAGTGGTTCCTCGGCTCGCTCTTCATCATCATCGCCA
CCCTCGCCTGGGCTTCTCTCTTCATCCTCCAGGCTCACACCCTGAAGCAGTACTCGGCACCGCTCTCCCTTACCACGCTC
ATCTGCTTCGTCGGCACCCTCCAGGCCATCGTCGTCACCTTGGCCATGGAGCACCGCCCCTCCGTCTGGACCATCGGCTT
CGACATGAACCTCCTCGCCGCCGCATACGCCGTCAGTACACTTCTCTACTCACCATATGCATGCGTCTTGTC---TCCTC
ATACATCGATCGATCGCATGCAAGATCTCATATGTAGTATCGTATGACTGATGTTGCAGGGCATCGTGACGTCGAGCATA
GCATACTACGTGCAAGGCCTGGTGATCCAGAAGACCGGGCCGGTTTTCGCGTCGGCCTTCAGCCCGCTGATGATGATCGT
GGTGGCCGTGATGGGCTCCTTCATCCTCTCCGAGAAGATATACCTGGGCGGCGTCCTCGGCTCCGTCCTCATCGTCATCG
GGCTCTACTCCGTGCTCTGGGGAAAGCACAAGGAGACGCAGGCAGAGTCTGCGGCTCTGCGGGAGG------------CC
ATGGCCTCCATCAACTCCAAGGGAGACGGAGACGCCGTACA---CGGGCACGATCCTGAGTGCGAGAAAGCCAACGGAGC
ACCCAAGCCATCCTCCAACGGACACGGAGCTAGTGCAGTCTGATCAAGAGATTCCAACTGCTTCCAAGTGCTAACTGCGG
GTGCGCGCGCGCGTCTGAACGAAATGTCTCGTCACTGACGTTGCATGCACTAGGGCTGCATG------------------
------ATAATTTTGCGCCGTGCCTTTTATTTTTGTCCTCTTGTATGATTTCCACAACCAACGACTATATTACCCCAGTA
CGCCCTGTACTTTTGTTCTTCTGTTTTA----TTATCGGGGGAGAAAGAAATGT---GTTCCGGCAAGGGGT--------
-ATGTACGTGTTCGTGTAAGAGAATTTTGAGCGTTTTTGTGATCCCGGCTTAATTTCGAAATAAATATCAGTTTGAAAAA
ATATAGTTCAATTCTGTGATAAATATCAGCTGGTTGTGACAACATCTAGGGTTCCTCAAATCATGCGACATCTCACGTCG
GGTAATTGACAAACTTGAAAATCAAAACCCCGTGTGGTAAAATTCGCGTGGTAT--------------------------
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------------------------------------
>chr3B_379
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-----------------------------------------------------------------------ATGTATGCT
--TAGTTACAAAACCAAGGTTGCAGAACACTGTTCTTCGTGACATTGGAAAGACATGTGATGATTTCTTTGACTTCCAAT
ACGTAACATTTGCTTCCCACTCTCATGTCAAATAGGACAAAATTTGATGGTTTGAGACCTATGACGTGTGATGCTACAGC
ACTACCGCAACCAGAGAAGCGGTTGAGATCTCCTTGTTCACCAGGTGCTCTTCATTTGCTTCCAGAAACCCATCAGCTGG
ATAGGACCAGATTAACATGGCAGAAGGTAAT--GAGTGTCCTCCTTTGACTGACAGATGATCCCAACAATGCATCCAATG
AAGCCACTCGGTCGTGGACATGGCATACGTCTGCACCGAAGTGCTTTACTGGGAAGCAGGAAGAAGAGAGCAAATAATTG
CTTTAAATAATGTCCAGAATGCCCCTACGGCGTGCATATAAATCCAGCAGGGAGCTCTGCATATTTCCTTCAGCTCAAGG
TCTAGCTTGGTCTCTCTTGCTCCTTGAGTTCCCTAACCAGAAGCTTCTAGGCTTTAGCCTCTAGCCCTAGCTAACTTATC
TTCTAGTTAACCAAGGC-TTTGCAGCCAGCAAGAAGTACCATATATTTCATCACCATGGGTGGCTACGGCGACTTGTTCG
AGAAGGCCAAGCCCTACATCGCCATGATCTGCTTGCAGTTCGGCTATGCCGGCATGAACGTCATCACCAAGGTCTCGCTC
AACGGCGGCATGAGCCACTACGTGCTCGTCGTGTACCGCCACGCCTTCGCCACCGTCTCCATCGCGCCATTTGCCCTAAT
TTTCGAAAGGTA----TATATACACATATATATACTCCCTTCGTTTTTAAATATTTGTCTTTTTAGAGATTTTAAATGGA
CTATCACTTACGGATGTATATAGACATACTTTTGAAGTGTGGATTCATTCATTTTGCTCTGCATGTAGTCATTTATTGAA
ATCTCTAGAAAGACAAATATTTAGAAACGGAGGGAGTAGACACGAACGATCCATGGACGAGCTAGGGCCGACCAGATAGT
GTGCATGCATTTTCTTCTTCTTTGCTACATGCATGGTTCACTGGCCTGAATTGAAACTGATGGTACGATGAACTTGATC-
TGAAATGGCAGAAAGGTGAGGCCGAAGATGACGTGGTCGTCCTTCCTCCAGATCTTCGTGCTGGCACTGCTCGGGTTAGT
TCTCCTGTCATTTTGT-------GCACCCAGCCCAAGTACTTTAAGAACGGAGACATAAGTGGACACTCCAATATGGGGG
CTCGGCTCTTTTGTCAAGAAACAAAAGGTGTCCGCCAAATGTTATA-TTTTTCAGCAGCTAGGTGCATGTACGCCAAAAA
AATGTATTTTTTTGCCAGCTTTCCTGAAATACTAACGTGTAACATGAGCTAATGAACCTTATGCATGCTGTTGA------
----------------------------TTATTTCAGGCCTGTGATTGACCAGAACTTCTACTATGTGGGTCTCAAGTAC
ACCGGCCCAACCTTCGCATGCGCCATGAGCAACATCCTTCCTGCCATGACCTTCGTGATGGCCTTCATCTTCAGGTA---
---------------------------------------TATAC--------------ATA--CATGCATCTCTTCTGAT
GAGAATCTGAAAAGAATAGTAGTGCGACGGTGCCGTTGGATCTGGC-AAACATTATTTGACAGTTTTTCGATCGTGCCCG
AAAAAT-TCATAGAATGGAGAAGGTGGACCTGAGAAAGGTGCGGTGCCAGGCGAAGGTGGCCGGGACGGTGGTGACGGTG
GCCGGCGCGATGCTGATGACGCTCTACAAGGGCCCGCTGATACGGATGGCGTGGACGA---GCCACGGGCAGCCCCACGG
CGGCGAGGACCCGGC---------CGTCGACCCCACGGGCAGGGAGTGGTTCCTCGGCTCGCTCTTCATCATCATCGCCA
CCCTCGCCTGGGCCTCTCTCTTCATCCTCCAGGCTCACACCCTGAAGCAGTACTCGGCGCCGCTCTCGCTCACCACGCTC
ATCTGCTTCGTCGGCACCCTCCAGGCCATCGTCGTCACCTTGGCCATGGAGCACCGCCCCTCCGTCTGGACCATCGGCTT
CGACATGAACCTCCTCGCCGCAGCATACGCCGTCAGTACACTTCTCCACTCACCAC--GCGTCTCATCTCCTCAATCGTC
ATACATCGATCGCAGCCGAATCTCATCGTG---------TCGCATGACTGATGTTGCAGGGCATCGTGACGTCGAGCATA
GCGTACTACGTGCAAGGCCTGGTGATCCAGAAGACCGGGCCGGTGTTCGCGTCGGCGTTCAGCCCACTGATGATGATCGT
GGTGGCCGTGATGGGCTCCTTCATCCTCTCCGAGAAGATATACCTGGGCGGCGTCCTCGGCTCCGTCCTCATCGTCATCG
GGCTCTACTCCGTGCTCTGGGGAAAGCACAAGGAGACCCAGGCGGAGTCCGCGGCTCTTCGGGAGGCGCTACCCATGGCC
ATGGCCTCCTGCAGCTCCAAGGTGACCGGAGACGCCGCGTCGGCCGGACACGATCCGGAGTGCGAGAAAGCCAACGGAGC
AGCCAAGCCATCCTCCAACGGGCACGGAGCTAGTGCGGTCTGATCAATCGATTCCAACTGCTTCCAAGTGCCAAGTGC--
---------------------AAATGTCTCGTCACTGACGTTGCATGCACTAGGGCCGTGTGCGCTGCATGCAAGGGGAG
AGTGGAATAATTTTGCGCCGTGCCTTTTATTTTTGTCCTCTTGTATGATTTCCACAACCAACGGCTATACTACTCCAGTA
CGCCTTGTATTTTTCT-----TGTTTTC----ATATCGGGGGAGAAAGAAATGTTGTGTTCCGGCAA-GGGT--------
-ATGCACGTGTTCATGTAAGAGAATTTTGAGTGGTTTA-TGATCCCGACTTAATTTTGAGATACATATCAGTTTGAAGAA
ATGTCGTTTAATTCAGCGATTAATATC-----------------------------------------------------
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------------------------------------
>chr1A_1025
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-------------------------------------------------------------------------------G
ACAAGGCCAAGCCTTACATCGCCATGATCTCGCTGCAGTTCGGCTACGCCGGCATGAACGTCCTCACCAAGGTCTCCCTC
AACGGCGGGATGAGCCACTACGTGCTCGTCGTGTACCGCCACGCCTTCGCCACACTCGCCATTGCACCCTTCGCTCTCTT
CCTCGAAAGGTA----TAGCTAGCTACTCAATTACTAGTGTACACATGTATTAA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TATTAGTGGTATTTTTAT------CTAACTCGTGAAACTTGACA
TGAAATGGCAGGAAGGTGAGGCCGAAGATGACGTGGTCCATCTTCTTCCAAATCTTCGTCCTTGCGCTGCTCGGGTTAGT
GCATGCCTGGCT--------------------------------------------------------------------
--------------------------------------------------------AGCTACCTGCAAAAATCATCTGA-
-----------------------------------------------------------TATGCATGTCTGAAATGACAC
GCCCATCTCACCCTC-TTCTTGACCTCTTG-CTGCAGACCGGTGATCGACCAGAATTTCTACTACGTGGGCCTGAAGTAC
ACCGGTCCGACGTTCGCCTGCGCGATGAGCAACATCCTGCCGGCGATGACCTTCGTCATGGCGGTGATCTTCAGGTGCAA
TTTCACTACCAGCTTACTTTGCA----TGCCGTGCATCATATGCAT------------ATA--CATGCGCACGTGGAACG
AGAAACCATTGCTAACATGGA-------------------------------------------TTTTGCATGATGTTCG
G----T-ACATAGGATGGAGAAGATAGAGTTGAAGAAGGTGCGGTGCCAGGCCAAGATCTTCGGGACTGTGGTGACGGTG
GCCGGCGCGATGCTCATGACGCTCTACAAGGGCCCCCTCATGCACCTGCCATGGACCAACGGCCACGCGCAGCCCAGCGG
CGGCGAGGCCTCAGGTGCCGCCGGCGTCGACCCCACCGCGAGGGAGTGGTTCCTGGGCTCCCTCTTCATCATCATCGCCA
CCCTCGCCTGGGCCTCGCTCTTCATCCTGCAGACCCACACCATCAGGAAGTACACCGCGCAGCTCTCCCTGACCACGCTC
ATCTGCTTCATCGGCACCATACAGGCCATCGCCGTCACCTTCGTCATGGAGCGCCGCGTCTCCGTCTGGACCATCGGCTT
CGACATGAACCTCCTCGCCGCCGCCTACGCGGTACGATCACTTACCACTGTCCTCTTCATCGCCATGACCTCTTCCATTA
CCAGTTCTTGACCAGTTTTGGTGATATT-------------------------TTGCAGGGCATCGTGACGTCGAGCATC
GCGTACTACGTGCAGGGGTTGGTGATCCAGAAGACGGGGCCGGTGTTTGCGTCGGCGTTCAGCCCGCTGATGATGATCAT
CGTGGCCGTCATGGGGTCCTTCATCCTGTCCGAGAAGATATACCTCGGGGCCGTGCTGGGCGCCGTGGTGATCGTGGTCG
GGCTCTACGCCGTGCTCTGGGGCAAGCACAAGGAGA--------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------
>chr1D_1025
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
ACAAGGCCAAGCCATACATCGCCATGATCTCCCTACAGTTTGGCTACGCCGGCATGAACGTCCTTACCAAGGTCTCTCTC
AACGGCGGGATGAGCCACTACGTGCTCGTCGTGTACCGACACGCCTTCGCCACACTCGCCATTGCACCCTTCGCTCTCTT
CATCGAGAGGTATAGCTAGCTAGCTACTCAATTACTAGTGTACGCATGTATTG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------GTGGTATTTTTTTATCTAACTAGCTTGTGAAACTTGACA
TGAAATGGCAGGAAAGTGAGGCCGAAGATGACGTGGTCCATCTTCTTCCAAATCTTCGTCCTTGCGCTGCTCGGGTTAGT
GCATGCTA-GCT--------------------------------------------------------------------
--------------------------------------------------------AGCTACCTGCAAAAATCATCTGA-
G-----------------------------------------------------------ATGCATGTCTGAAATGACAC
GCCCATCTTACCCCTGTTCTTGATTTCTTTACTGCAGACCGGTGATCGATCAGAATTTCTACTACGTGGGGCTGAAGTAC
ACCGGCCCGACGTTCGCCTGCGCGATGAGCAACATCCTGCCGGCGATGACCTTCGTCATGGCGGTGATCTTCAGGTACAA
TTTCACTACCAGCTTACTTTGTA----TGTCGTGCATCATATGC--------------ATA--CATGCGCACATGGAACG
AGAAACCATTGCTAAC----A-------------------------------------------TTTTGCATGATGTTCG
G----T-ACATAGGATGGAGAAGATAGAGTTGAAGAAGGTGCGGTGCCAGGCCAAGATCTTCGGAACGGTGGTGACGGTG
GCCGGCGCTATGCTCATGACGCTTTACAAGGGGCCCCTCATGCACCTGCCATGGACCAACGGCCACGCGCAGCCCAGCGG
CGGCGAGGCCCCGGGTGCCGCCGGCGTCGACCCCACCGCGAGGGAGTGGTTCCTGGGCTCCCTCTTCATCATCATCGCCA
CCCTCGCCTGGGCCTCGCTCTTCATCCTGCAGACCCACACCATCAAGAAGTACACTGCCCAGCTCTCCCTCACCACCCTC
ATCTGCTTCATCGGCACCATCCAGGCCATCGCCGTAACCTTCATCATGGAGCGCCGCGTCTCCGTCTGGACCATCGGCTT
CGACATGAACCTCCTCGCCGCCGCCTACGCAGTACGACCACTTACCATTGTCCACTTCGTGGCCATGATCTCTTCCATTA
CCAGTTCTTGACCGGTTTTGCTGGTATT-------------------------TTGCAGGGCATCGTGACGTCGAGCATC
GCGTACTACGTGCAGGGGCTGGTGATCCAGAAGACGGGGCCGGTGTTCGCGTCGGCGTTCAGCCCGCTGATGATGATCAT
CGTGGCCGTCATGGGGTCCTTCATCCTGTCCGAGAAGATATACCTCGGGGCCGTGCTGGGCGCCGTGGTGATCGTGGTCG
GGCTCTACGCCGTGCTCTGGGGCAAGCACAAGGAGACGCAGG--------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------
>chr1B_1025
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
AGAAGGCCAAGCCTTACATCGCCATGATCTCGCTGCAGTTCGGCTACGCCGGCATGAACGTCCTTACCAAGGTCTCCCTC
AACGGCGGGATGAGCCACTACGTGCTCGTCGTGTACCGACACGCCTTCGCCACACTCGCCATTGCACCCTTCGCTCTCTT
CATCGAGAGGTATAGCTAGCTAGCTATTCAATTACTAGTGTACACTTGATCATATATAGA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCTTTGCTAGCCCACATGTATTAGTGGTATTTTTAT------CTAACTTGTGAAACTTGACA
TGAAACGGCAGGAAGGTGAGGCCGAAGATGACGTGGTCCATCTTCTTCCAAATCTTCGTCCTTGCGCTGCTCGGGTTAGT
GCATGC----CT--------------------------------------------------------------------
--------------------------------------------------------AGCTACCTGCAAAAATCATCTGAA
G-----------------------------------------------------------ATGCATGTCTGGAATGCCAC
GCCCATCTTACCCCTGTTCTTGATTTCTTTACTGCAGACCGGTGATCGATCAGAATTTCTACTACGTGGGGCTGAAGTAC
ACCGGCCCGACGTTCGCCTGCGCGATGAGCAACATCCTGCCGGCGATGACCTTCGTCATGGCGGTGATCTTCAGGTGCAA
TTTCACTACCAGCTTACTGACTTTGGGTGCCGTGCATCATATGC--------------ATATCCATGCGCACGTGGAACG
AGAAACCATTGCTAACG-----------------------------------------------TTGTGCATGACGTTTG
G----T-ACATAGGATGGAGAAGATAGAGTTGAAGAAGGTGCGGTGCCAGGCCAAAATCTTCGGGACGGTGGTGACCGTG
GCCGGCGCGATGCTCATGACGCTCTACAAGGGCCCCCTCATGCACCTGCCATGGACCAACGGCCACGCGCAGCCCAGCGG
CGTCGAGGCCCCGGGTGCCGCCGGCGTCGACCCCACCGCGAGGGAGTGGTTTCTGGGCTCCCTCTTCATCATCATCGCCA
CCCTCGCCTGGGCCTCGCTCTTCATCCTGCAGACCCACACCATCAAGAAGTACACCGCCCAGCTCTCCCTCACCACCCTC
ATCTGCTTCATCGGCACCCTCCAAGCGATCGCCGTCACCTTCGTCATGGAGCGCCGCGTCTCCGTCTGGACCATCGGCTT
CGACATGAATCTCCTCGCCGCCGCCTACGCGGTACGATCACTTACCATTGTACGA--------CATGATCTCTTCCATTA
CCATTTCTTAACCGGTTTTGGTGGTATT-------------------------TTGCAGGGCATCGTGACGTCGAGCATC
GCGTACTACGTGCAGGGGCTGGTGATCCAGAAGACGGGGCCGGTGTTCGCGTCGGCGTTCAGCCCGCTGATGATGATCAT
CGTGGCCGTCATGGGGTCCTTCATCCTGTCCGAGAAGATATACCTCGGGGCCGTGCTGGGCGCCGTGGTGATCGTGGTCG
GGCTCTACGCCGTGCTCTGGGGCAAGCACAAGGAGACGCAGG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr5D_3227
GAACTGTAAACCAGCTC---------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------GCTCGCGTCGCTCCCAGGGGGGCGGCACGGGCGAAACCTA---GCCGCCGCCGCCCCCGTTT
TCCCCACCTCCACCCCAGCTCCCCTCGCCGCCGCCAGGTGAATCCGACGGGCAAAGCCCGCTCGGCGTTTGGCGGCGGCG
GGGACTTCTCCTCGCGAGACGCGTAGCGGCGGCCCTGAACGACGCGAGGCGACTGGCGGCGGCGGCGGCGTCTCGTCGGC
GCAGGCAAGCCGGGGCGGCGGCCCCGGGCATGGTGGTGGCGCCGCTCTCTCCTCTCCTCCCTCCCTGTGGGTCGTGAGGG
GCTGTGCTGGGCCAGCCGCCGCGGATCTGGCGCTAGGAGGCTGGATCCGTCGGTGGGGCTGCCCAGGCGTGTGGCTCCGG
CGGCTGCACGTCCGGCTGGTTGAGCTGCGGTGGTGGCGCCGTGCTGCAGCTCCTGGATGGCGGCGCGGCGGCGCCGCGTA
GGTGGATGTGCTGCGGCGGTCGTGGGGAGCGGTCCC
>chr7D_3240
CAG------------TC---------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------GCTCGCGTCGCTCCCAGGGGGGCGGCACGGGCGAAACCTAGCCGCCGCCGCCGCCCCCGTTT
TCCCCACCTCCACCCCAGCTCCCCTCGCCGCCGCCAGGTGAATCCGACGGGCAAAGCCCGCTCGGCGTTCGGCGGCGGCG
GGGACTTCTCCTCGCAAGACGCGTAGCGGCGGCCCTGTACGACGCGAGGCGACTGGCGGCAGCGGCGGCGTCTCGCCGGC
GCAGGCAAGCCGAGGCGGCGGCCCCGGGCATGGTGGCGGCGCCGCTCTCTCCTCTCCTCCCTCCCTGTGGGTCGTGAGGG
GCGGTGCTGGGCCAGCCGCCGCGGATCTGGCGCTAGGAGGCTGGATCCGTCGGTGGGGCTGCCCAGGCGTGTGGCTCCGG
CGGCTGCATGTCCGGCTGGTTGAGCTGCGGTGGTGGCGGCGTGCTGCAGCTCCTGGATGGCGGCGCGGCGGCGCCGCGTA
GGTGGATGTGCTGCGGCGGTCGTGGGGAGCGGTCCC
>SNPs
---S-----S---SS-----------------S-S----------S-S---S--S--------------S----------
------S--------------S----------------------------------------------------------
-------------S-------------------------S------S------------S------S-SSSSSS------
--------------------------------------------------------------------------------
SS-----------------------SS-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
-----------------------------S-S---------------SS-S-----------------------------
-------------S-----------------------------------------------------------------S
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
-------------------------------SS---------------------------------------S-------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
----------S---------------------------------------------------------------------
S----------------S------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------SS--S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------SS-----S----------------S-----
----S---------------------------------------S------S----------------------------
--------------------------------S--S--------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------------------------------------------------------------------------S-
------------------S--------------------------------------------S----------------
----S--------------------------------SS----------------------S------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-----------------------------------------------S--------------------------------
--------------------------S-------------------------------------------S---------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S--------------S--S------
----------S--S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
----------------------S--S-SSSSS--------------------------S------------SSSSSSSSS
S-----------S--------------------------------------------------------------S----
------------------------------S----------------------------------SS-S-----------
--------------------SS-----S--SS-S----S---------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS--------------------------------------------------------------
---S--------------------------------------------------------------S-------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
-S-------------------------------------------------S----------------------------
S--------------------------------------S----------------------------------------
-----------------------------S------
>forward_220
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CCGGCAAACTCTCCAGAAAC--------------------
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------------------------------------
>reverse_2235
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------CGGGGA
CTCGACTCTTTTGT------------------------------------------------------------------
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------------------------------------
>forward_910
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------CAACCACTAGCTGGCCACTG--------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------
>reverse_2522
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------CGCCATGACCTTCGTGATGG-------------------
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------------------------------------
>forward_2245
--------------------------------------------------------------------------------
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-----------------------------------------------------------------ACTCCAATACGGGGA
CTCGA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------
>reverse_4158
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------TGG
AACTGAACGAAGCAGCT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
