>input_sequence_44309
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-------------------------------------------------------------------------ATGAAGA
GCTGGGACGCCGGTCCTTCCTCCTCCGGCAGCTCGCCGGAGAAGCAGGCACGCCCCTCCAAGCAGGGGCGTGATGAAGAC
GGCGACGAGCTCGCCGTCGAGGATCGCCGCCCCCACCTCAACACTCGAGTCAAGAGACCGCGGCTCTCCATCGAATCGGA
AGACGAGCAAGATTCTTCCTCCG---GGAGCTCGCCGGAGAAGCAGGCACGCCCCTCCAAACAGGGGCGTGATGAAGACG
GCGACGAGCTCGCCGTCGAGGATTGCCGCCCCCACCTGCGGGAGCGGCTCTCCTTGGACACGGAGGGAGACCAAGGTACG
GAGCTGTCCCCAAGCCTACCCCTGCTGGAGGAGATGCCCCAGGACGTGATTGTGAGCGTTCTGAGGACCATCGGGGTCCG
AAGCGGGGTTCAGGTCAGCTCCTCTTGTTCGTATCTGCGAGAGTTCGTGATGAAGAATGCAGCCCCATGCTGCGGAAGGT
ATCTGCAGATCAAAGCTTGTAGAATCGAAGGAGACGCAACCATAGCTACACTGAGCACGGATTTGCTATGCAAAGTCATG
TCCAAGCTTGACCCTTTTGCAATGTCAGCCCTGGGAGGATCCTGTTCGGCTTTCAGGTGTTTGCTCGCCTCACCACCCAC
GCGTGGTTTGATTGAAGATTTTGGAGAGAAGCGCATTCCCCTTGGTGCTCTGACGGTAACTCCAATCAGCCCATATCCTG
TTCTACTTTCTTCAATGCTCCCCGCTAGGCAGAGGCCTGCAAGCGATCTGTTCGCTGCCTTTTGGCGTAGATTCGCAGCA
GAAAGGGTGATAGGGAGAGTAGAGATATCAGACTGTAGAGATGGCTTGATTCTGCTCAAGGGGAGAGCCATCAGGCGTTT
TGTTGTGTGTGCTCCACTGGCGGCCAACATGTACGCGAGGCTACTGCCACAGCTCTCCAATGACGGTGATCATGTTTACA
TGTCTGCTTCAGTTCTTCGAGATAAGAAGGCTGCCATAGAGTTCTCGGTTACTGTTCTTATGGGTGATCTCCAGAGCGCC
AACGTGACAATTAACCAGTACCAATCAAAGACAGGCCAATGGAGTTCCAGGCGCTGCCCGTGGCTAACTCCTGCAACATT
GCAGTCGGAGATTAAGCAACCGTCTGTTCTGTGCAAAAACACTATATGGTTCCTGCAGCCGATGCTGCAACTGATCTCTG
TCGACCCAGACAAGTTAACAGTTGGCACGCTGCCCTTTCCGCCCCTTGACGGCATTTCAACTGTCAACCATGCTCTCCTG
GAGCGATCTCAGGGATCAATTTGCCTAGTGATGATCACAGATAACAGAGTAATGGTCTTCGAGCTGACAC-TGATGGCGA
CGCATGGAGCTTATTCAAGCAGTTTCACGGTCCTCCTGATGGATGCCGGCTTATTGGAACAGGTTTTCAAAAAATCCTGG
TGCATTCTGGTGAAAGGCTGCGATACATTGACATTGGGGATGGTATTTTCAAAGACGTGTCCCTGGTCTTCAACGTTGTC
AGACAAGCTTGGTGTTACGATGTTCCATACCCACCTAGGACAGACTTGTTTCGTAGGCTACAGAGAGTTGGTGAGCCTCT
TCTTCTTTCCATTTGACTCTTTCTATTTTTCTGATACAAAGTTCTGTTCAAATTTGTGACAATTGTCAGTCTTAATGAGG
AATTCTCTGTTTTGGTTAACCAGGGACTGCATTGGAGGTCAAGGAGCACGAAGGGCTGA---------------------
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>chr6D_1_TraesCS6D01G036600
GAGTTAGTGGCGCATGAGGAGGATGAGCTCGCCCTTTTCGCTCCATCATGACATCGCAAGGAGGAGGAGCATTAGAGGGC
CAAGGCGGAGCGGCTCGCGATGATAATTGTTAGAAAAATATATTAAA---TATTTTTGGAAATAATAATAAATAAGTTCG
ATAGAGGCAACGAGCAACAG-CCACATGAGCTGGACGATATGCAATACGAGTAAGACAAGCTCGTCCCTT----------
---------TTATGGTACGGTCCATCGAGACAAACCGTGAGGGAAGATGAAGAGAGGGCGGAGGAGGAGCGGACTGTGGC
GAGACATTGAGGCGGACTACCCCTGCCACTC-AGGTTCCTGAGCACTTCGTCGACCACGTGCGATTAACATGAACTTTGT
TTAACACCTGAACTTTTTTTTTGTAAACATGAACTTCACAAAAATATGATTTTTTTC---TGTTTACATTTTAAAAATTG
TCTAGTAATATTTTATAAATTATACTAAAGAAAATCTTTTTGAAATAAATATAAAATATAAAATAAATTTGTTTTATGGC
AAGTCACTTCATTGTGTAACTAAGAGCAGACTTAAATTGTTTCGTACAGAATAACTAC----------------------
-------------------------------------------------------------TTATAAGTAATCTCCCTGC
ACCGCGCTGCAGGCGTGGTTAGCAATCTCCAGATCATCATTAAAGAAATTAATCTCCCCACACAAAAAATATCTACTATC
CAGTATAATTATAATTAATCTGTTTTCCTTACCGTACATTTTTCGCGCTAAAACTATTATCCTTAATCTGTTTTTCTTAC
ATTTTTTTAGAGAAGACAATCTGCTTATGC--AGGATGGGCCGTACTGGG-CTGGTTAATGGCGAAACGGGGCCCTAAAG
AAGTTGGATCCGGCGAAACAGAGGCCGATCGGAAAATTATAAATTCTGCAGCCTTCGGCGTCTGCAACGATTTCCCTCCA
CTGCGTAACAGATTGTAGTTCCCAAATTCTCCATATCCCCGAGAAACCAAGAATTGCAAGAATAATTCCGACGATGAAGA
GCTGGGACGCCGGTCCTTCCTCCTCCGGCAGCTCGCCGGAGAAGCAGGCACGCCCCTCCAAGCAGGGGCGTGATGAAGAC
GGCGACGAGCTCGCCGTCGAGGATCGCCGCCCCCACCTCAACACTCGAGTCAAGAGACCGCGGCTCTCCATCGAATCGGA
AGACGAGCAAGATTCTTCCTCCG---GGAGCTCGCCGGAGAAGCAGGCACGCCCCTCCAAACAGGGGCGTGATGAAGACG
GCGACGAGCTCGCCGTCGAGGATTGCCGCCCCCACCTGCGGGAGCGGCTCTCCTTGGACACGGAGGGAGACCAAGGTACG
GAGCTGTCCCCAAGCCTACCCCTGCTGGAGGAGATGCCCCAGGACGTGATTGTGAGCGTTCTGAGGACCATCGGGGTCCG
AAGCGGGGTTCAGGTCAGCTCCTCTTGTTCGTATCTGCGAGAGTTCGTGATGAAGAATGCAGCCCCATGCTGCGGAAGGT
ATCTGCAGATCAAAGCTTGTAGAATCGAAGGAGACGCAACCATAGCTACACTGAGCACGGATTTGCTATGCAAAGTCATG
TCCAAGCTTGACCCTTTTGCAATGTCAGCCCTGGGAGGATCCTGTTCGGCTTTCAGGTGTTTGCTCGCCTCACCACCCAC
GCGTGGTTTGATTGAAGATTTTGGAGAGAAGCGCATTCCCCTTGGTGCTCTGACGGTAACTCCAATCAGCCCATATCCTG
TTCTACTTTCTTCAATGCTCCCCGCTAGGCAGAGGCCTGCAAGCGATCTGTTCGCTGCCTTTTGGCGTAGATTCGCAGCA
GAAAGGGTGATAGGGAGAGTAGAGATATCAGACTGTAGAGATGGCTTGATTCTGCTCAAGGGGAGAGCCATCAGGCGTTT
TGTTGTGTGTGCTCCACTGGCGGCCAACATGTACGCGAGGCTACTGCCACAGCTCTCCAATGACGGTGATCATGTTTACA
TGTCTGCTTCAGTTCTTCGAGATAAGAAGGCTGCCATAGAGTTCTCGGTTACTGTTCTTATGGGTGATCTCCAGAGCGCC
AACGTGACAATTAACCAGTACCAATCAAAGACAGGCCAATGGAGTTCCAGGCGCTGCCCGTGGCTAACTCCTGCAACATT
GCAGTCGGAGATTAAGCAACCGTCTGTTCTGTGCAAAAACACTATATGGTTCCTGCAGCCGATGCTGCAACTGATCTCTG
TCGACCCAGACAAGTTAACAGTTGGCACGCTGCCCTTTCCGCCCCTTGACGGCATTTCAACTGTCAACCATGCTCTCCTG
GAGCGATCTCAGGGATCAATTTGCCTAGTGATGATCACAGATAACAGAGTAATGGTCTTCGAGCTGACAC-TGATGGCGA
CGCATGGAGCTTATTCAAGCAGTTTCACGGTCCTCCTGATGGATGCCGGCTTATTGGAACAGGTTTTCAAAAAATCCTGG
TGCATTCTGGTGAAAGGCTGCGATACATTGACATTGGGGATGGTATTTTCAAAGACGTGTCCCTGGTCTTCAACGTTGTC
AGACAAGCTTGGTGTTACGATGTTCCATACCCACCTAGGACAGACTTGTTTCGTAGGCTACAGAGAGTTGGTGAGCCTCT
TCTTCTTTCCATTTGACTCTTTCTATTTTTCTGATACAAAGTTCTGTTCAAATTTGTGACAATTGTCAGTCTTAATGAGG
AATTCTCTGTTTTGGTTAACCAGGGACTGCATTGGAGGTCAAGGAGCACGAAGGGCTGAGGAGCGCAAAGGGCGGACCTA
AACAGAAGCCTCTTGAGAAGGCCACAAGCAGTTCTATCTCCTATTATTAGTCCCTTAGATACTGTAACTCGGCACCGTAG
AATGTTGTTTTGACTGTTGTTAAACGATGATGTGTTCCTTGCA-TTTTTTTGCGATGCGAGGATGTGTCCCTTATTTTGG
GGGAGGGATTATTAATAGAGCTATCAAGTCTCAACTGAGAGACA-----ATTTTGTTTAACTATACTTGATTCTGTGGCG
CTTTTCTTTCTCATGCTGTAAATTTTGTGTGTTGATTAATGTGATTTTGATTACAATGCTAAATCCAAATGTAAGTTTTC
CAGCAAAGGTTATGTCAATTTTGTTTTGTATTTCAAAAACATATACAAGGCTATTTCAGCAAATATGATGTCAAAATTGA
AATGTATACAAAGGTATTGCAGCAAAGGTGATGTTAAATTTTTGTACAAAGCTATCTCAGCAAAGGTGATGTCTGAATTT
TGTATTCCACATCATATACAAGCTTAGATGATCACAAGATATTCAGCCTGGGGTCGAGTCCTGATGAGGCTCCCCAAGGT
TCTCATTTTTTCATCATCAATTTACAATAATAATGTGGTTGATTTCATCCTCAGTATCTCATATATACAAGTAATTGCCA
TTTACAGTAACAAGGCTTCTTTGCTGTACAGCCAAAAGACCAAAATATTAGCCAGTTGCGTTGTTTTCTCTTCCCCTGTT
CTTGTGCTCTACAGACTGGCTACCGCCATCAGCTCCGAGCCATGGCCGCTGCGGAATCGATCTGAAACCGAGTCGTCGCG
CACCTTCGGCCTCGACCCTCCCGCTGTGGCACAG----------------------------------------------
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--------AAAGAAGACGACGGCTATACAAATGTGGTTGTTGTCGAACTTGACCTACAAGCCAGGGC----ACACCATTT
TCTCCATTCATTCATAAGCACAACACCTATAGGGAGGGCATGATGTGCATCTCCAATACCTGATCCACAAGGTTAAAAAA
GTT
>chr1A_1
GAGTTAGCGGTGCATGAGGAGGATGAGCTCGCCCTTTTCGCTCCATCATGACATCGCAAGGAGGAGAAGCGTTGGAGGGC
CATGGCGGAGTGGCTCGCGATGATAATTGTTAGAAAATATACTAAAGATTTATTTTTTGAAATAATAATAAATAAGTTCG
ATAGAGGCAACCGAGCTCGATCCACATGAGATCGACGATATGCAATACGAGTAGGAGTTAGCGGAGCATGATAGGACAAG
CTCATCCTCTTACGGTACGGTCCATCAAGAGAAACCATGAGGAAAGATGAGCAGACGGCGGTGGCGGAGTGGACTGTGGC
GAGACATCGAGGCAGACTACCTTTGCCAGCTTAGGTTCCTGAGCACTTCGTCGACCACGTGCGATTAACATGAACTTTGT
TTAACACCTGAACTTTTTTG--GTAAACATGAACTTCACAAAAATATGATTTTGTTTATTTGTTTACAATTTAAA-----
-----TAATATTTTATAAAATATACTAAAGAAAACCTTTTGAAAATAAATATAAATAATGAAATAAATTTGTTTTATGAC
AAGTCACATCATTGTATAACTAAATGCAGACTTAAATTGTTTTGTACTCCCTCCGTCCCGAAATAAGTGTCTCAATTTTG
TATTAGCTCTCGTACAAATTTGTACTAAGCTCAAGACACTTATTTTGTGACGGAGGGAGTATTATAAGTAATCTCCCTGC
ACCGCGCTGGAGGCGTGGTGAGCGATCTCCAGATCATCATTAAAAAAATTAATCTCCCCACACACAAAAAATCTAATATC
CAGTGTAATTATAATTAATCTGTTTT-CTTACAGTACATTTTTCTCGCTAAAACTATTATCCTTAATCTGTTTTTCTTAC
ATTTT-TTAGAGAAGACAATCATCTGTTTGTGAGCATGGGCCGTACTGGGCCTGGTTAATGGCGAAACGGGGGCCTAAAG
AAGTTGGATCCGGCGAAACAGAGCCCGATTCGAAAATTATAAATTCTGCAGCCTTCGGCGTCTTCAACGATTTCCCTCCA
TTGCATAACAGATTGTAGTTCCCAAATTCTCCATATCCCCAACAAACCAAGAATTGCAAGAAGAGCTCCGACGATGAAGA
GCTGGGACGCCGGTCCTTCCTCCTCCGGCAGCTCGCCGGAGAAGCAGGCACGCCCCTCCAAACAGGGGCGTGATGAAGAC
GGCGACGAGCTCGCCGTCGAGGATCGCCGCCCCCACCTCAACACTCGAGTCAAGAGACCGCGACTCTCCATCGAATCGGA
AGACGAGCAAGATTCTTCCTCCTCCAGGAGCTCGCCGGAGAAGCAGGCACGCCCCTCCAAACAGGGGCGTGATGAAGACG
GCGACGAGCTCGCCGTCGAGGATCTCCGTCCCCACCTGCGGGAGCGGCTCTCATTGGACACGGAGGGAGACCAAGATACG
GAGCTGTCCCCAAGCCTATCCCTTCTGGAGGAGATGCCCCAGGACGTGATTGTGAGCGTTCTGAGGACCATCGGGGTCCG
AAGCGGGGTTCAGGTCAGCTCCTCTTGTTCGTATCTGCGAGAGTTCGTGATGAAGAATGCAGCCCCATGCTGCGGAAGGT
ATCTGCAGATCAAAGCTTGTAGAATCGAAGGAGACGCAACCATAGCTACACCGAGCATGGATTTGCTATGCAAAGTCATG
TCCAAGCTTGACCCTTTTGCAATGTCAGCTCTGGGAGGATCCTGTTTGGCTTTCAGGTGTTTGCTCGCCTCACCACCCTC
GCGTGGTTTGATTGAAGATTTTGGAGAGAAGCGCATTCCCCTTGGTGCTCTGACGGTAACTCCAATCAGCCCATATCCTG
TTCTACTTTCTTCCATGCTCCCCGCTAGGCAGAGGCCTGCAAGCGATCTGTTCGCTGCCTTTCGGCGTAGATTCGCAGCA
GAAAGGATGATAGGGAGGGTAGAGATATCAGACTGCCGAGATGGCTTGATTCTGCTCAAGGGGAGAGCCATCAGGCGTTT
TGTTGTGTTTGCTCCACTGGCGGCCAACATGTACGCGAGGCTACTGCCACAGCTCTCTAATGACGGTGATCATGTTTACA
TGTCTGCTTCAGTTCTTCGAGACAAGAAGGCTGCCACAGAGTTCTCGGTTACTGTTCTGATGGGTGATCTCAACAGCGCC
AACGTGACCATTAGCCAGTACCAATCAAAGTCAGGCCAATGTAGTTCGAGGCGCTGCCCGTGGCTAAATCCTGCAACATT
GCAGTCGCAGATTAAGCAACCGTCTGTTCTATGCAAAAACAGTATATGGATCCTGCAGCCGATGCTGCAACTGATCTCTG
TCGACCCATACAAGTTAACTATTGGCACGCTGCCCTTTCCGCCCCTTGACGGCATTTCAACTGTCAACCATGCTCTCCTG
GAGCGAGCTCAGGGTTCAATTTGCCTAGTGATGATCGCAGATAACAGAGTAATGGTCTTCGAGCTGACACCTGATGGCGA
CACATGGAGCTTGTTCAAGCAGTTTCAGGGTCCTCCTGATGGATGCCAGCTTATTGGAACAGGTTTTGGAAAGATCCTGG
TGCATTCTGGTGAAAGAATGCGATACATTGACATTGGGGATGGTATTTTCAAAGACGTGTCCCTGGTCTTCAACGTTGTC
AGACAAGCTTGGTGTTACGATGTTCCGTACCCACCTATGACAGACTTGTTTCGTAGGCTACAATGAGTTGGTGAGCCTCT
TCTTCTTTCCATTTGACTCTTTCTATTTTTCTGATACAAAGTTCTGTTCAAATTTGTGACAATTGTCAGTCTTAATGAGG
AATTCTCTGTTTTGGTTAACCAGGGACTGCATTGGAGGTGAAGGAGCACGAAGGGCCGAGGAGCGCAAAGGGCGTACCTA
AACAGAAGCCTCTTGAGAAGACCACAAGCAGTTCTATCTCCTATTATTAGTCTCTTAGATACTGTAACTCGGCACCGGAG
AATGTTGTTTTGACTGTTGTTAAACAATGATGTGTTCCTTGCATTTTTTTTGCGATGCGAGGATGTGTCCCTTATTTTGG
GGG--GGATCATTAATAGAGCTATCAAGTCTCAGAGAATTTTCTTTGCCATTTTGTTTAACTATACTTGATTCAATGGCG
CTTTTCTTTCTCATGCTGTAAATTTTGTGTGCTGATT-ATGTGATTTTGATTACAATGCTAAATCCGAATGTAAGTTTTC
TAGCAAAGGTCATGTCAATTTTGTTTTGTATTTCAAAAGCATATACAAGGCTATTTCAGAAAATATGATGTCAAAATTGA
AATGTATACACAGGTATTGCAGCAAAGGTGATGTTAAATTTTTGTACAAAGCTATCTCAGCAAAGGTGATGTCTAAATTT
TGTATTCCACATCATATACAAGCTTAGATGATCACAACATATTCAGCCTGGGGTCGAGACCTGATGAGGCTCCCCAAGGT
TCTCATTTTTTCATCATCAATTTACAGTAATGATGTGGTTGATTTCATCCTCAGTATCTCATATATACAAGTAATAGCCA
TTTAAAGTAACAAGGCTTCTTTGCTGTACAGCCAAAAGACCAAAATATTGGCCAGTTGTGTTGTTTTCTCTTCCCCTGTT
CTTGTGCCCTACAGACTGGCTGCCGCCATCAGCTCCGAGCCGTGGCCGCTGCTGAATCGATCTGAAACCGAGTCGTCGCG
GTTGCAACTGTATTATCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAAAGAAGACGACGGCCATACAAATGTGGTTGTTGTCGAACTTGACCTACAAGCCGGGTGGGGTACACCATTT
TCTCCATTCATTCATAAGCACAACACCTATA----GGGCATGATGTGCATCTCCAATACCTGATCCACAAGGTTAAAAAA
GTT
>SNPs
-------S--S-------------------------------------------------------S---S--S------
--S-------S--------------------------SSSSS-S--S----------S----------------------
-----------SSSSSS-SS----------S-S--------------------S--SSSSSSS-SS-S-S----------
------------S-------------S---S-----S-----S-------SS---S-----S--S----S----------
-------S-----S-------SS-----SSS-------------------------------------------------
-------------------SSS-------------------------------S--S-----------S------SSSSS
SSSSS--------------S--------------S-----SS-------------SS--S------------------S-
-------S-------S-------SS-----------------S----SSSS-SSS-S-----------------------
--------------------------------------------------------------------------------
---------S---------S---S--------------------S-------------------S----S-----S----
----S---------------------S-----S-----------S-----------------------------------
-----S---------------SS--SS-SS----S-------------------------------------S-------
-----------------------S-----SS--------------------------------S----------------
S---S-----------------------------------S-S-------------------S-SS--------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------S-----------------
----------------------S---------------------------------------------------------
-----------------------SS---S-----------------------S----------------------S----
------------------S----S--------------------------------------------------------
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---------------------------------------------------S-----S----------------------
-----------------------------S----------------S-------------------------------S-
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-------------S------------------------------------------------S-----------------
------S----------S-----------------SS-------------------------------------------
--------S------------------------------------------------S----------------------
----------------------S-------------S---------------------S------------S-S------
--------S----S----------------S----------S-----S-------------------S------------
-------S----------------------S----------S-------S------------------------------
--------S----------SS-----------------------------------------------------------
------S-------S---------------------S-------------------------------------------
-S----------S--------------S-------------------S-------------------SS---S-------
----------------SS--------------------------------------------------------------
--------------------------S----------S------------------------SS----------------
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---------------------------------------S----------------S-----------------S-----
--------------------S-------------------------------S------------------------S--
-------------------------S------------------------------------------------------
---SS----S-----------------------SSSS-SSSS-S-----------------------------SS-----
-------------------------------S-----S----------------------------S-------------
S---------S---------------------------S--------------------S--------------------
----------S---------------------------------------------------------------S-----
-------------------------------------S--------------------S---------------------
--------------------------S----S-------------------------------------------S----
----S--------------------------------------------S--------S---------------------
-------S-------------S-------------------S----------S---------------------------
SSSSSSSSSSSSSS-S-S--SSSSSSSSSSSSSS----------------------------------------------
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-----------------------S--------------------------------------S--SS-------------
-------------------------------SSSS---------------------------------------------
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>forward_342
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--GACATTGAGGCGGACTACCC----------------------------------------------------------
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>reverse_2191
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------------------------------ACAGGCCAATGGAGTTCCAG------------------------------
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>forward_1045
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-----------------------------------------------------------------AACGATTTCCCTCCA
CTGCG---------------------------------------------------------------------------
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>reverse_2282
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-----------------------------------------CTATATGGTTCCTGCAGCCGA------------------
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>forward_2208
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----------------------------AGACAGGCCAATGGAGTTCC--------------------------------
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>reverse_3702
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---------------------CGCTGTGGCACAGAAAGAAG---------------------------------------
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