>input_sequence_44295
--------------------------------------------------------------------------------
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---------------------------------------------------------------ATGGACAACTTGTGGCA
TCTCGGAGATGAGTTCCGTGGGCAATCAAAGGTGGTGGAGGACCGCCAATGGTCTCTCATGACATCAAAGCTTGCTGAGA
TCACAAAGTCAAAGGCTGAGAGGATGAATGACTTTGAGTATGCACGGATGAACACCGTCCCTGATGTCAAGCAATGGGAT
AAGCTATCCTACCACCAAGAAGACAACAAGATGGACCACCTCAATCTTGGCCTGATGAACCTGGATCTTAAGATGAATGA
TCTCAAGATGAACGAGGCTGCCATGAAGTACCCTTTCCGCAACATGGCCTATAACATGAATCCGATGTACCCCAAGGGAA
ACAACGGTAATGTCAATTCGTTCAAGATGAATGTTGGGGTCAACAAATATCCCAATAATCAGAATGGGAAGGAAACAAAC
GGCAAACACAATGGTGGTAACAACAACAATGGAGGCAACAGCAACAACAACTCTGTTGACAAGCGCTTCAAAACATTGCC
AACAAGCGAGATGCTACCGAGGAATGAAGTTCTTGGTGGATACATCTTTGTCTGCAACAATGATACCATGCAGGAGGATC
TCAAGAGACAGCTTTTTGGTATGTGCTACTATGTATCCTTGTAAATCATTTCATATTCCATCTCGCACAGTTATATGTAA
ATTACTCTGTTACTCATGGTTTGTTCTGTTCTGCAGGCTTGCCAGCAAGATATCGTGATTCAGTCCGAGCCATCACTCCT
GGTCTACCTCTTTTCCTCTACAACTACACGACCCATCAGCTACATGGGGTGTTTGAGGTGTGCGATTGTTTCATTTTCTA
ATAACCACAAGCCTCCTTATTCGAATGGAATTGCAAGCCTCTTCATGAATACCTTGTAACAGTTCTATTTGTCATACATA
AATGCTTATATCATTTGCATGGATAGCTTTATGTGCTGTTTATGAATTTCCTTTTA------------------------
-------GATGAAAAGTTTTAGCTAGTGTTTTCTTGGAACTGAATTAAATAGGAAATGCCATTCTGGTGGTCTAGATACT
CTACCATATGCAATCAAGAACTTGAACTTTCCTGTTC---TTCTTTCTTCTAGCTGTAATAAAACATGGTAGGCTACCAA
ATTTATTCCTGTGCTTCTAAGCCAACTTTCTCCTGATGTTATTTCCCTATTAGCCAAACGTGCTTATGTGGCCCTTCCCG
TATTGCCCGGCTGAAATTAGAAGCGTACATGTTCTCAAAATTCCATTCCAAATGCACATGCATCTCGGTTGAAATCTAGC
AG--ATTATAGTGCTTGTTCTTCAGCATTCTTATCAGATTTTCTTGTGTCTCAGGCTGCCAGTTTTGGAGGATCAAACAT
TGATCCCACTGCTTGGGAAGATAAGAAGTGCAAAGGTGAATCCAGATTCCCAGCACAGGTAATTAATTTCTAAGGTTGAC
ATTTGTTCATAAAATATTAGGCTTGTTTATAGAATATCAAGCTTGTTTTACATGATCTGACATACTCATCCATCATATCA
GGTGAGGATCCGCATTAGAAGGCTTTGCAAGGCCTTGGAAGAGGATGCTTTCAGGCCAGTGCTGCACCACTATGATGGTC
CTAAATTCCGCCTGGAGCTCTCCATAGCAGAGGTATATATACCTTACTCCAGCTGCTGTCATGATAATAGATGCTTGAGT
AAGACTTGTGGACTGAA-CATTCTCATCTCAATTTTGCAGACACTGTCACTGCTAGACCTGTGCAAGACAGAAGACGCCT
GA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------
>chr1B_1_TraesCS1B01G329600
GACGCGCTTCCGCTTTCCCCATTTCTCACCTCTCGCATGTTCGGTAGCGGCGCCGCACCCGCCTGGCCTCGCACGGTTCG
CCTCACGCGGCGCTACCGTCGCGGCCGCGGTCTCGTTCCTTCCGCCCGCGCCTCGCTTTCCTGGCGTGTCGCACTCCTGA
GCCCCCTTCCTGGACTCCAG----------GCTGCCTCCCTGCCCCGCCACAGA----TAGGAAGGGGTGGTAGATCTGG
GCTTGGGGAGTAGCGTTCCGCGAAATTCGGTTCAAAGCTCTCGTAGATCTGGATGATAGTTGTGATTTGGCGTCCTTCTG
GGTGACGGATTGGTGTATAGAATTTTTTTAAATTTTGTGCGGTTGAAAGATAGATTTATGGTATTACGAAGCTTGGTCTA
AGTTGATAGTCGTCATGACTCATGAGCATGAATTGAAATGGTCAGTGTTAGTTCCATTTGTTCCGTAGAGAGTTTGTATG
ATCATAGTTGAGCGATGGTA-GCGCATCAGCGCGGGATCAGAAAGCGAGGAGTGTGGATTGTGTTCATGGGAGAAGTACA
ACAGGATTTAGGGCTAGAGGGGCTAGAGCGTGGACGGAAGGGGGACAGCGTATTCTGGCAGCCTGTTGTTGCTGTCGAAA
CTTGCCCGCCTGGATGCACTATTCTTGGTGGGCTATTATTGAT-TGTCAAAAAGTTCTCTCGCTGATTTTGGTTGGGTTC
AGTTTTATTGCTCGTTGAGGTGTAAATATAGGTTTGTAGCTCAGCATTTTGTTTCCTGAAGTAGCGGTCTAGTCTGATTC
TGAAGTTAGATAGCAGCTCTGAAAA-AATTAT-TTTCTTAT-----AATTGCAACATGCATGAAGTTATTTGTAATTTTT
GAGTTGTCTGGGAGATAAGTTGCTCCAATATCATTATGTCCTGTGGTGCATTTATTTTTCGTAAGCTTGATATTTTTACC
AGTGTTGTTTGTCACCTGATATATGTTAATCCTTTCTTGCGTGCAGAGAGCTTGAACTGAGCTATGGACAACTTGTGGCA
TCTCGGAGATGAGTTCCGTGGGCAATCAAAGGTGGTGGAGGACCGCCAATGGTCTCTCATGACATCAAAGCTTGCTGAGA
TCACAAAGTCAAAGGCTGAGAGGATGAATGACTTTGAGTATGCACGGATGAACACCGTCCCTGATGTCAAGCAATGGGAT
AAGCTATCCTACCACCAAGAAGACAACAAGATGGACCACCTCAATCTTGGCCTGATGAACCTGGATCTTAAGATGAATGA
TCTCAAGATGAACGAGGCTGCCATGAAGTACCCTTTCCGCAACATGGCCTATAACATGAATCCGATGTACCCCAAGGGAA
ACAACGGTAATGTCAATTCGTTCAAGATGAATGTTGGGGTCAACAAATATCCCAATAATCAGAATGGGAAGGAAACAAAC
GGCAAACACAATGGTGGTAACAACAACAATGGAGGCAACAGCAACAACAACTCTGTTGACAAGCGCTTCAAAACATTGCC
AACAAGCGAGATGCTACCGAGGAATGAAGTTCTTGGTGGATACATCTTTGTCTGCAACAATGATACCATGCAGGAGGATC
TCAAGAGACAGCTTTTTGGTATGTGCTACTATGTATCCTTGTAAATCATTTCATATTCCATCTCGCACAGTTATATGTAA
ATTACTCTGTTACTCATGGTTTGTTCTGTTCTGCAGGCTTGCCAGCAAGATATCGTGATTCAGTCCGAGCCATCACTCCT
GGTCTACCTCTTTTCCTCTACAACTACACGACCCATCAGCTACATGGGGTGTTTGAGGTGTGCGATTGTTTCATTTTCTA
ATAACCACAAGCCTCCTTATTCGAATGGAATTGCAAGCCTCTTCATGAATACCTTGTAACAGTTCTATTTGTCATACATA
AATGCTTATATCATTTGCATGGATAGCTTTATGTGCTGTTTATGAATTTCCTTTTA------------------------
-------GATGAAAAGTTTTAGCTAGTGTTTTCTTGGAACTGAATTAAATAGGAAATGCCATTCTGGTGGTCTAGATACT
CTACCATATGCAATCAAGAACTTGAACTTTCCTGTTC---TTCTTTCTTCTAGCTGTAATAAAACATGGTAGGCTACCAA
ATTTATTCCTGTGCTTCTAAGCCAACTTTCTCCTGATGTTATTTCCCTATTAGCCAAACGTGCTTATGTGGCCCTTCCCG
TATTGCCCGGCTGAAATTAGAAGCGTACATGTTCTCAAAATTCCATTCCAAATGCACATGCATCTCGGTTGAAATCTAGC
AG--ATTATAGTGCTTGTTCTTCAGCATTCTTATCAGATTTTCTTGTGTCTCAGGCTGCCAGTTTTGGAGGATCAAACAT
TGATCCCACTGCTTGGGAAGATAAGAAGTGCAAAGGTGAATCCAGATTCCCAGCACAGGTAATTAATTTCTAAGGTTGAC
ATTTGTTCATAAAATATTAGGCTTGTTTATAGAATATCAAGCTTGTTTTACATGATCTGACATACTCATCCATCATATCA
GGTGAGGATCCGCATTAGAAGGCTTTGCAAGGCCTTGGAAGAGGATGCTTTCAGGCCAGTGCTGCACCACTATGATGGTC
CTAAATTCCGCCTGGAGCTCTCCATAGCAGAGGTATATATACCTTACTCCAGCTGCTGTCATGATAATAGATGCTTGAGT
AAGACTTGTGGACTGAA-CATTCTCATCTCAATTTTGCAGACACTGTCACTGCTAGACCTGTGCAAGACAGAAGACGCCT
GATCGGCTTCGGAACATGGTTGTGGTTGCTCTGTGGTTCTTTTTAGTAAATATCATCCCTGTAAGTTGTGGAAGATGTTT
TCACAATGATCTGTTCCGTCCTTCGTCCATGAAAGCGCAAGCTGTTGGTTGGTGGTTGCATTTCCCCCAGAAAGGACCTG
GTACTCGGAAGAAGTAGGCCTCTAAAGATGTGAGCCTGTCTGTGTCGGTGCCGTCTGTCCGTAATCTTGGTGATGTGTAT
GTTCTTCTTCATATTTATGTATTTGTAGTGCAGTATGCCCGCCGTCAGCGGGGAAACCCCGAAAGACGGGGGATACTGTT
GTGATGCATCATGAATGCCCCAAAGTGAGGGCGGGTGATGTTGGGAGTGTACCCTTGTTGTCTTTGTACCTTACCTTGGT
TTGGAAAGCTGGAACCTTGCATTTGACTTGATGCTGCTGTTTCTGTGCCGCCTGTGTTG---------GAAACCTTGCAA
TTATACTCGTTGCTGCTCTTGACA----------TGTTGCTTTGTTTGCCGGTTTGGCCCCTTGAT-GACGCTGTCGCTG
TACACGTTGTCCA--TCTTGTTGCTTTCACGTACACGAATGTAGTTATGTACTTCTCT----------------------
-------GTTTCTAAATATAACATCTTTTAGAGATTTCAATATGGACTACATATGGATGTATATAGACGCATTTTAGAGT
GTAGATTCACTCATTTTGCTCCGTATATTGTATATATTGAAATCTCTACAAATGTAGCCTTCAATATATTGTATATATTG
AAATCTTTACAAATGTAGCCCCTTACTGAAATCTCTAAAAAGACTCATATTTGTGTAGTATATATTGAAATCTCTACAAA
TGTAACCTTTTATTGAGATCTCTAAAAAGACTTGTATTTAGAAACGGAGGGATTAGGTGCTAAAAATGGTCACCTGCTTA
GCTGATGCACAGCTGAGGATTGGTGAGCTGAAGTGGTTACATCGCTAGCTAGATCAAGGTTGTGTTGTAGGTGCACCAAA
ACTTAAGTGTGAA
>chr1D_3
CGCGC---TCCGCTCTCCCCGTTTCTCACCTCTCGCGTGTTCGGTAGCGGCGCCGCGCCCGCCTGGTCTCGCCCGGTTCG
CCTCACGCGGCGCTCCCGTCGCGGCCGCGGTCTCGTTCCTGCCGCCCGCGCCTCGCTTTCCTGGCGTGCCGCGCGCCAGA
GCCCACCTCATGGGCTCCAGGCTGCCGCTGGCTGCCTCCTTGCCCCGCCAGAGTAAGGTAGGAAGGGGTGTCAGATCTGG
GCTTGGGGAGTAGGGTTCCGCGAAATTCGGTTCAAAGCTCTCATAGATCTAGATGATAGTTGTGATTTGGCGTCCTTCTG
GGTGACGAATTGGTGTATAGAA---TTTTTAATTTCGTGCGGTCGAATGATAGATTTATGGTATTACGAAGCTTGGTTTA
AGTTGAAAGTTGTCATGAA-------CATGAATTGAAATGGTCAGTGTTAGTTCCATTTGTTCCGTAGAGAGTTTGCATG
ATCATAGTTGAGCGATGGTAAGCGC-----------ATCAGAAAGCGAGGAGTGGGGATTGTGTTCATGGG---------
-------------------------------------------GACAGCGTATTCTGGCAGCTTGTTGTTGCTGTCGAAA
CTTGCCTGCCTGGATGCACTATTCTTGGTGGGCTATTATTGATTTGTCAAAAAGTTCTCTCACGGATTTCCGTT-GGTTC
AGTTTTATTGCTCGTTGAGGTGTAAATATAGGTTTGTAGCTCAGCATTTTGTTTCCTGAAGTAGTGGTCTAGTCTGATTC
TAAAGTTAGATAGCAGCTCTGAAAAAAAATTAGTTTCTTAT-----AATTGCAACATGCATGAAGTTATTTCTAATTTTT
GTGTTGTATGGGAGATATGTTGCTCCAATATCATTATGTCCCACGGAG----------------------------TACC
AGTGTTGCTTGTCACCTGATATATGTTAATCCTTTCCTACGTGCAGAGAGCTTGAACCGAGCTATGGACAACTTGTGGCA
TCTCGGAGATGAGTTCCGTGGGCAATCAAAGGTGGTGGAGGACCGCCAATGGTCTCTCATGACATCAAAGCTGGCTGAGA
TCACAAAGTCAAAGGCTGAGAGGATGAATGACTTTGAGTATGCACGGATGAACACCGTCCCTGATGTGAAGCAATGGGAT
AAGCTATCCTACCACCAAGAAGACAACAAGATGGACCACCTCAATCTTGGCCTCATGAACCTGGATCTTAAGATGAATGA
TCTCAAGATGAACGAGGCTGCCATGAAGTACCCTTTCCGCAACATGGCCTATAACATGAATCCGATGTACCCCAAGGGAA
ACAATGGTAATGTCAATTCATTCAAGATGAATGTCGGGGTCAACAAATATCCGAATAATCAGAATGGGAAGGAAGCAAAC
GGCAAACACAATGGTGGTAACAACAACAATGGAGGCAACAGCAACAACAACTCTGTTGACAAGCGCTTCAAAACATTGCC
AACAAGCGAGATGCTACCGAGGAATGAAGTTCTTGGTGGATACATCTTTGTCTGCAACAATGATACCATGCAGGAGGATC
TCAAGAGACAGCTTTTTGGTATGTGCTACTATGTATCCTTGTAAATCATTTCACATACCATCTCACACAATTATATTTAA
ATTACTCTGTTACTCATGGTTTGTTCTGTTCTGCAGGCTTGCCAGCAAGATATCGTGATTCAGTCCGAGCCATCACTCCT
GGTCTACCTCTTTTCCTCTACAACTACACGACCCATCAGCTACATGGGGTGTTTGAGGTGTGCGATTGTTTCATTTTCTG
ATAACCACAAGCCTCCTTATTCGAATGGAATTGCAAGCCTCTTCATGAATACCTTGTAACAGTTCTATTTGTCATACATA
AATGCTTATATCATTTGCATGGA-------------------------------TA------------------------
-------GATGAAAAGTTTTAGCTAGTGTTTTCTTGGAACTGAATTAAATAGGAAATGCCATTCTGGTGGTCTAGATACT
CTACCATATGCAATCAAGAACTTGAACTTTCCTGTTC---TT---TCTTCTAGCTGTAATAAAACATGGTAGGTTACCAA
ATTAATTCCTGTGCTTCTAAGCCAACTTTCTCCTGATGTTATTTCCCTATTAGCCAAACGTGCTTCTGTGGCCCTTCCCA
TATTGCCTGGCTGAAATTAGAAGCGTACATGTTCTCAAAGTTCCATTCCAAATGCACATGCATCTCGGTTGAAATCTAGC
AG--ATTATAGTGCTTGTTCTTCATCATTCTTATCAGATTTTCT--TGTCTCAGGCTGCTAGTTTTGGAGGATCAAACAT
TGATCCCACTGCTTGGGAAGATAAGAAGTGCAAAGGTGAATCCAGATTCCCAGCACAGGTAATTAATTTCTAAGGTTGAC
ATA--------------------TGTTTATAGAATATCAGGCTTGTTTTTCATGATCTGACATATTCATCCATCATATCA
GGTGAGGATCCGCATTAGAAGGCTTTGCAAGGCCTTGGAAGAGGATGCTTTCAGGCCAGTGCTGCACCACTATGATGGTC
CTAAATTCCGCCTCGAGCTCTCCATAGCAGAGGTATATATACCTTGCTCCAGCTGCTGTCATGATAATAGATGCTTGAGT
AAGACTTGTGGACTGAAACATTCTCATCTCAATTTTGCAGACACTGTCACTGCTAGACCTGTGCAAGACAGAAGACGCCT
GATCTGCTTCGGAACATGTTTGTGGTTGCTCTGTGGTTCTTTTTAGTAAATATCATCCCTGTAAGTTGTGGAAGATGTTT
TCACAATGATCTGTCCCGTCCGTCGTCCATGAAAGCGCAAGCTGTTGGTTGGTGGTTGCATTTCCCCCAGAAAGGACCTG
GTACTCGGAAGAAGTAGGCCTCTAAAGATGTGAGCCTGTCTGTGTCGGTGCCGTCTGTCCGTAATCTCGGTGATGTGTAT
GTTCTTCTTCATATTTATGTATTTGTAGTGCAGTATGCCCGCCGCCAGCGGGGAAACCCCGAAAGACGGGGGATACTGTT
GTGATGCATCAGGAACGCCCCAAAGTGAGGGTGGTTGATGTTGGGAGTGTAT-CTTGTTGTCTCTGTACCTTACCTTGGT
TTGGAAAGTTGGAACCTTGCATTTGACTTGATGCTGCTGTTTCTGTACTGCTGCCAGTGTTGGAAGTTAAATCCTTGCAA
TTTTACTCGTCGCTTCTCTTGGCAATTGGCATGCTGTTGCTTTGGTTGCCGGTTTGGCCTCTTAGACGACGCTGTCGCTG
TACACGTTGTCCA--TCTTGTTTTCGCT--GTACAGGAACGTAGCTATGTACTTACTCCGTT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------
>chr1A_9
--------TCCGCTTTCCCCGTTTCTCACCTCTCGCGTGTTCGGTAGCGCCGCCGCACCCGCCTGGCCTCGCCCGGTTCG
CCTCACGCGGCGCTCCCGTTGCGGCCACGGTCTCGATCCTCCGCCGCGCGCCTCGCCGTCCTGGCGAGTGGCACTCCTGA
GCCCCCTTCCTGGACTCCAG----------GGTGCCTCCTTGCCCCGCCACGGA----TGGGAAGGGGTGGCAGATCTGG
GCATGGGGAGTAGCGTTCCGTAAAATTCGGTTCAAAGTTCCCATAGATCTAGATGATAGTTGTGATTTGGCGTCCTTCTG
GGTGACGAATTGGTCTATAGAA---TTTTTAATTTTGTGCGGTTGGAAGATAGATTTACGGTATTATGAAGCTTGGTTTA
AGTTGAAAGTTGTCATGAA-------CATGAATTGAAATGGTCGGTGTTACTTCCATTTGTTTTGTAGAGAGTTTGTATG
ATCATAGTTGAGCGATGGTAAGCGCACCAGCGCGGGATCAGAAAGCGAGGAGTAGGGATTGTGTTCATGGGAGAAGTACA
ACAGGATATA---------GGGCTAGAGCGTGGACGGAAGGG-GACAGCGTATTCTGGCAGCTTGTTGTTGCTGTCGAAA
CTTGCCCGCCTTGATGCACTATTCTTGGTGGGCTATTATTGAT-TGTCAAAAAGTTCTCTCACTGATTTCGGTTGGGTTC
AGTTTTATTGCTCGTTGAGGTGTAAATATAGGTTTGTAGCTCAGCATTTTGTTTCCTGAAGTAGCGGTCTAGTCTGATTC
TAAAGTTAGATAGCAGCTCTGAAAA-AAATTAGTTTCTTAGAATAGAATTACAACATGCATGAAGTTATTTGTAATTTTT
GTGTTGTATTGGAGATATGTTGCTCCAATATCATTATGTCCTATGGTGCATTTATTTTCGTAAGCAGGATA--TTTTACA
AGTGTTGTTTGTCACCTGATATATGTTAATCCTTTCTTGCGTGCAGAGAGCTTGAACTGAGCTATGGACAACTTGTGGCA
TCTCGGAGATGAGTTCCGTGGGCAATCAAAGGTGGTGGAGGACCGCCAATGGTCTCTCATGACATCAAAGCTGGCTGAGA
TCACAAAGTCAAAGGCTGAGAGGATGAATGACTTTGAGTATGCAAGGATGAACACCGTCCCTGATGTGAAGCAATGGGAT
AAGCAATCCTACCACCAAGAAGACAACAAGATGGACCACCTCAATCTTGGCCTCATGAACCTGGATCTTAAGATGAACGA
TCTCAAGATGAACGAGGCTGCCATGAAGTACCCTTTCCGCAACATGGCCTATAACATGAACCCCATGTACCCCAAGGGAA
ACAACGGTAATGTCAATTCATTCAAGATGAATGTCGGGGTCAACAAATATCCGAATAATCAGAATGGGAAGGAAGCAAAC
GGCAAACACAATGGTGGTAACAACAACAATGGAGGCAACAGCAACAACAACTCTGTTGACAAGCGCTTCAAAACATTACC
AACAAGCGAGATGCTACCAAGGAATGAAGTTCTTGGTGGATACATCTTTGTCTGCAACAATGATACCATGCAGGAGGATC
TCAAGAGACAGCTTTTTGGTATGC-CTACTATGTATCCTTGTAAATCATTTCACATACCATCTCACACAATTATATGTAA
GTTACTCTGTTACTCATGGTTTGTTCTGTTCTGCAGGCTTGCCAGCAAGATATCGTGATTCAGTCCGAGCCATCACTCCT
GGTCTACCTCTTTTCCTCTACAACTACACGACCCATCAGCTACATGGGGTGTTTGAGGTGTGTGATTGTTTCATTTGCTG
ATAACTACGAGCCTCCTTATTTGAATGGAACTGCAAGCCTCTTCATGAATACATTGTAACAGTTGTATTTGTCATACATA
AATGCTTATATCATTTGCATGGA-------------------------------TAGTTTCGTGTGCTGTTTCTGAATTT
CCTTTTAGATGAAAAGTTTTAGCTAGTGTTTTCTTGGAACTGAATTAAATAGGAAATGCCATTTTGGCGGTGTAGATACT
CTACCATATGTAATCAAGAACTTGAACTTTCATGTTCTTCTT---TCTTCTAGCTGTAATAAAACATGGTAGGTTACCAA
ATTTATTCCTGTGCTTCTAAGCCAACATTCTCCTGATGTTACGTTCCTATTAGCCAAACGTGCTTCTGTGGCCCTTCCGG
TTTTGCCTGGCTGAAATTAGAAGCGTACCTGTTCTCAAAGTTCCATTTCAAATGCACATGCGTCTTGGTTGAACTCTAGC
ACAAATTATAGTGCTTGTTCTTCAGCATTCTAATCAGATTTTCTTGTGTCTCAGGCTGCTAGTTTTGGAGGATCAAACAT
TGATCCCACCGCTTGGGAAGATAAGAAGTGCAAAGGTGAATCCAGATTCCCAGCACAGGTAATTAATTTCCAAGGTTGAC
ATA--------------------TGTTTAT----TATCAGGCTTGTTTTTCATGATCTGACATATTCATC-ATCATATCA
GGTGAGGATCCGCATTAGAAGGCTTTGCAAGGCCTTGGAAGAGGATGCTTTTAGGCCAGTGCTGCACCACTATGATGGTC
CTAAATTCCGCCTCGAGCTCTCCATAGCAGAGGTATATATACCTTACTCCAGCTGC---CACGATAATAGATGCTTGAGC
AAGACAGGTGGACTG-AACATTCTCATCTCAATTTTGCAGACACTGTCACTGCTGGACCTGTGCAAGACGGAAGACGCCT
GATCTGCTTTGGAACATGGTTGTGGTTGCTCTGTGGTTCTTTTTAGTAAATATCATCCCTGTAAGTTGTGGAAGATGTTT
TCACAATGATCTGTTCCGTCCGTCGTCCATGAAAGCGCAAGCTGTTGGTTGGTGG-TGCATTTCCCCCAGAAAGGACCTG
GTGCTTGGAAGAAGTAGGCCTCTAAAGATGTGAGCCTGTCTGTGTCGGTGCCGTCTGTCCGTAATCTCGGTGATGTGTAT
GTTT---TTCATATTTATGTATTTGTAGTGCAGTATGCCCGCCGCCAGCGGGGAAACCCCGAAAGACGGGGGATACTGTT
GTGATGCATCATGAATGCCCCAAAGTGAGGGCGGTTGATGCTGGGAGTGTATC--TGTTGTCTCTGTACCTTACCTTGGT
TTGGAAAGTTGGAACCTTGCATTTGACTT-ATGCTGCTGTTTCTGTACCGCTGCCAGTGTTGGAAGTTGAAACCTTGCAA
TTTTACTCGTTGC-----------------------TTGCTTTGTTTGCCGGTTTGGCCTCCTGAT-GACGCTGTGCCCA
AAATACACGCTCCGTTCATCTTTCTTTCACGTTCAGTGGCTTAGGTAATCTTCATTTGGATGATGTATGAATGTACTCCC
TCTCCCCGTTACCAAATATAAGTCTTTGGAGAGATTCCACTAAACCCTAAACC------------------TTTTAAAGT
GTAGATTCACTCATTTTGCTCACTATGTAGTTCA----------------------------------------------
-----------------------TAGTGAAATCTCTATAAAGACTCAAGGTTGTGTA-----------------------
--------------------------------------------------------------------------------
---GATGCAGAGCTGAGAATTGGTGAGCTGAAGTGGTTACATTGTTGGCTAGATCAAGGTTGTGTTGTAGGTGCACCAAA
TCTTATAGT----
>SNPs
SS---SSS------------S---------------S-----------------------------------S-------
--------------S-------------------------S---------------------------------------
---------------------------------------S-------------------------------S--------
------------------------------------------S-------S-----------------------------
-------S--------------SSS----S-----------------------------------------------S--
------S---S-------SSSSSSSS------------------------------------------------------
--------------------------S---------------------------S-------------------------
-------S--SSSSSSSSS-----------------------S-------------------S-----------------
-------------------------------------------------------------S-------S----------
--------------------------------------------------------------------------------
-S--------------------------S-SS------------------------------------------------
-S-----S---------S------------------------S---------------SSSS-SSSSSSSSSS-------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
-------------------------------------------------------------------S------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
-------------------S--------------S-----------------S---------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--S-------S----S----------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
--------------------------------------------------------------------------------
------------------------------------------SSS----------------------------S------
-----------------------------------------------------------------S--------------
-------S-------------------------------S----------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--SSSSSSSSSSSSSSSSSSSSS----------------S---------S--------------S---------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
---------------------S----------------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------S-----------------------------------
----------------------------------S----------------S-----------S----------------
--------S-------------------------------------S----SSSSSS-----------------------
--S-----------S------S-------------------------------------S--------------------
----------------------S------------S---S----S---------S-SS----------------------
----------S-S--------SSSS--SS-------S--S--SSSS---S-SSSSSSSSSSSSSSSSSSSS-----S---
---------------------SS---S-S--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--S-----------S---------SSS-------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS------S-------S------------------------S-S-S---------------------------------
S----SSSSSSSS
>forward_37
-----------------CCCATTTCTCACCTCTCGCA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_1435
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACAAAC
GGCAAACACAATGGT-----------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>forward_1254
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ACCACCTCAATCTTGGCCTG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------
>reverse_2226
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATGTGGCCCTTCCCG
TATTG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_1958
--------------------------------------------------------------------------------
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---------------TGCATGGATAGCTTTATGTGCTG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2805
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----GGCTTCGGAACATGGTTGTG--------------------------------------------------------
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-------------
