>input_sequence_44280
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------------------------------------------------------------------------ATACTTCC
GCTCTCCAGGGTTCGTTTCCCCTCGGAGCCGAAACCCTAGCCGCCGCCGCCGAC------------GACCGCGAGCAGGC
TCAGATGGGAGGCAAGTGCCCGCACCGCAAGGTCAAAAAGCGCCGTCTCAACTGCAAGCAGGTGCGCCGCGGCAAGTTCC
TCGTCAAAGCCGACGACGCCGTCTACGACGAGCTCGTCAAGCTGGCCGACCAGGGCAAGGATTCCGAGGGCAAGGCGCTT
CCCGTCGACGAGGACCTCCCCGGCATGGGCCAGTTCTACTGCCTCCACTGCGAGTATGCCTCCCAACTCCACCACT---C
TGCTTCGATTTCCTCCATGTATATCGGATTAAAGCATCATGTCGTCCTTTTGTGGTGCTAGTGTGATGTTCTTGATGGTC
CTATTTAGATGCTGTTACAGACATAGTAGGGCGTTTTTGGGTCAATTAGGATGTGATAAATTGCACATGTTC--------
---TAGTATGTTGCTGCATATATGCTACAGGAAGCTGTAA---TATCTGTGTCTGAATACTTGGGGATCTATAGGTTGTT
TTGACAGTGCCTTAACTGAATCAAGATGGGTAGGTAGGCAACTGTACTTGTGAATCACTGTATCACACAATGATATGTTC
TGTGCCTG-TGAGGAGCTTCATTTCTCAGTTTCTCGT-ACAGCAATTTAACTCTATTTCCTTCTGATTATTTATACTACA
--TGTTCTGGTGGTGGCTGCAGTCGGTACTTCGCGGATGAGACCGTGAAGGAGGATCACTACCGCTCAAAGCGCCACAAG
AAAAGGTGATTCCCCTTGTTCTGAGTCAACTTATTAAAGCTTATGTTCAGTGTTATATGATGCACCAGAACTCCCTGAGC
TGGTGCACTTGCGTCGATGCCTGTATCCGTATCCAGTACCAATCTGAGGATCAGATTTGGAGAGATAATTTAAATATGCT
GGTGATAATTTAAAGAGCAATACATTGGCCCAGTGTGACAAAACCTAGCACATCCCACAGCCATGTCTCCTGTGCAGGAC
ACTTGCATATGAG---CCTTTCCTCTCTCATGACATGCACTGTGTTTGTGACTGCCCATCAATCAAGAGAAACCTATAAT
ACATGCACTGTGTTGCATGATGCTATAGCTGAACAGAGGAGACTCTGCTCTAAATTCTCTCACGCAGTGTTT-TGAAGTA
ACTGTTTATTTGAATCGTGTGTAAGTTTTA-ATGTTCAAGA---------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------GCCAACTTAGTTGTGTG
AATGTAATCCAGTTGCTAAGAAGCAAGAACATTGGCCATTGTTTCTAAAGAATTTTAGCCTGATGAAAGACCTTTAATTC
AGTCCCGCATAACTTGA------------------------------------------------------G--CTTGAA
AGGAACATACGAAGCTGTAGAAAGATCTTGATGTGTGA----------------AGTCTCCTATCTAATGACTACCTTTT
GATTCATGTAGGGTCAAGCAGTTGTCTGGACCAGCCCCACACACGCAAATAGATGCCGATCTCGCTGGTGGAATGGGAAT
GCCGGACAACGGCTTGAAGCTCATGTCTTCCTGAACTTTGTGATCGTTGTTTGATGTTTTTATTGCTGTTGCTATACATC
TGTACCAACTTTGCTTGATTTGTAACATGCAAATAGTCGCTTCGGTCGAAGAGGTTAGGATTATATATTTCTGTGTCTGC
CTCATGCTTGCCAGCTTTTATCTACATTGAGAACGAGTTACCTATCTGCGTCTGGGACAAAATGTCAATGATTTAGCAGC
AGATTATGTACTATGAATTGGAACTCC-----------------------------------------------------
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---------------
>chr4D_1_TraesCS4D01G038700
TCCTGCCGAATTCTATCAAAAGTGATGCAACCACAACCATGTTGTCCGTCTGACGGGAGCCAAAACTAAGGCTAGTCGGC
ATTAAACCAAATTCAAAGCAGAAGGCAAAACGCAAAGGGACAACAAAA-TAATGAAACCAGCAAAAAGCTAACTCTTGGC
ATTGCATAAAGACTTCAAAAGTTTTTACATGTTCCTTGTGAGGGCATGTACCTGGGTAATATGTTCTGCTATTTCCCCTT
TGCTCTTTCTGGCTAGCCGCATCACTCCATCATCGAGGGGTCTGCCGGATTCTACTCCGTTAGCCCATGCGCGAGTTGGG
GTGCCCCTGTTTTTTTTATGATTTAATTTCA-AAAAAATGTCCCCAAAATTCAAAAAAAGTGTTTGGG------------
---------ATTTCAAAAAATGTTCCAAATTTTGAAAAGAGTTCCCAGATTTTAAAAAATGTTCATGAATTTGAACAATA
TTAATCAGATTTCCTCTCAAAAAAATATTAATCAGATTTGAAAATATGTTCCGAATTTATTTATTTTATGAATTTT---A
AAAATGTTTCTAGATTTTAAAAATATTCTAGGATTTCAAAAAATGTTCCAAAATTTTAAAAATCTTTCCACATTTCAAAA
AATATTTGATTTTTCATAAAATATTCAAAAAATTGAAAACTAAAAAAAATAAGAAAAATGAAATGAAGAAG---------
-AACGAAAACCAAAAATTAAATAAAGAAACTAACAGAGAAAAAAAAGGAAAAAATGGTTTAGAGAAGGTTCAACCGGTGG
GACGGAATA---------GGCTGGCCCATATAGCAGGACAACTCTCGCGTTTCTTCCCCACGTCAT----GGAGAATAGA
ATTGGGCCCGATCGGACGGTTAGAAAAAT---------------------------------------------------
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---------GCAACTGCGCGCAGCTCTTCC-TTGGGGAACTGGGCTTCTCATTTGTGCAGACCATTGGCGATAACC-GGA
TTCACGCTCGGCCCAGTCAA-GCTCAAGCCTATACCAAACCCTCTCTCTCCTCCCGTCCTCCTCCTCTCTCCATACTTCC
GCTCTCCAGGGTTCGTTTCCCCTCGGAGCCGAAACCCTAGCCGCCGCCGCCGAC------------GACCGCGAGCAGGC
TCAGATGGGAGGCAAGTGCCCGCACCGCAAGGTCAAAAAGCGCCGTCTCAACTGCAAGCAGGTGCGCCGCGGCAAGTTCC
TCGTCAAAGCCGACGACGCCGTCTACGACGAGCTCGTCAAGCTGGCCGACCAGGGCAAGGATTCCGAGGGCAAGGCGCTT
CCCGTCGACGAGGACCTCCCCGGCATGGGCCAGTTCTACTGCCTCCACTGCGAGTATGCCTCCCAACTCCACCACT---C
TGCTTCGATTTCCTCCATGTATATCGGATTAAAGCATCATGTCGTCCTTTTGTGGTGCTAGTGTGATGTTCTTGATGGTC
CTATTTAGATGCTGTTACAGACATAGTAGGGCGTTTTTGGGTCAATTAGGATGTGATAAATTGCACATGTTC--------
---TAGTATGTTGCTGCATATATGCTACAGGAAGCTGTAA---TATCTGTGTCTGAATACTTGGGGATCTATAGGTTGTT
TTGACAGTGCCTTAACTGAATCAAGATGGGTAGGTAGGCAACTGTACTTGTGAATCACTGTATCACACAATGATATGTTC
TGTGCCTG-TGAGGAGCTTCATTTCTCAGTTTCTCGT-ACAGCAATTTAACTCTATTTCCTTCTGATTATTTATACTACA
--TGTTCTGGTGGTGGCTGCAGTCGGTACTTCGCGGATGAGACCGTGAAGGAGGATCACTACCGCTCAAAGCGCCACAAG
AAAAGGTGATTCCCCTTGTTCTGAGTCAACTTATTAAAGCTTATGTTCAGTGTTATATGATGCACCAGAACTCCCTGAGC
TGGTGCACTTGCGTCGATGCCTGTATCCGTATCCAGTACCAATCTGAGGATCAGATTTGGAGAGATAATTTAAATATGCT
GGTGATAATTTAAAGAGCAATACATTGGCCCAGTGTGACAAAACCTAGCACATCCCACAGCCATGTCTCCTGTGCAGGAC
ACTTGCATATGAG---CCTTTCCTCTCTCATGACATGCACTGTGTTTGTGACTGCCCATCAATCAAGAGAAACCTATAAT
ACATGCACTGTGTTGCATGATGCTATAGCTGAACAGAGGAGACTCTGCTCTAAATTCTCTCACGCAGTGTTT-TGAAGTA
ACTGTTTATTTGAATCGTGTGTAAGTTTTA-ATGTTCAAGA---------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------GCCAACTTAGTTGTGTG
AATGTAATCCAGTTGCTAAGAAGCAAGAACATTGGCCATTGTTTCTAAAGAATTTTAGCCTGATGAAAGACCTTTAATTC
AGTCCCGCATAACTTGA------------------------------------------------------G--CTTGAA
AGGAACATACGAAGCTGTAGAAAGATCTTGATGTGTGA----------------AGTCTCCTATCTAATGACTACCTTTT
GATTCATGTAGGGTCAAGCAGTTGTCTGGACCAGCCCCACACACGCAAATAGATGCCGATCTCGCTGGTGGAATGGGAAT
GCCGGACAACGGCTTGAAGCTCATGTCTTCCTGAACTTTGTGATCGTTGTTTGATGTTTTTATTGCTGTTGCTATACATC
TGTACCAACTTTGCTTGATTTGTAACATGCAAATAGTCGCTTCGGTCGAAGAGGTTAGGATTATATATTTCTGTGTCTGC
CTCATGCTTGCCAGCTTTTATCTACATTGAGAACGAGTTACCTATCTGCGTCTGGGACAAAATGTCAATGATTTAGCAGC
AGATTATGTACTATGAATTGGAACTCCATAGTGGTATTCTCATCAGCTTGAATACAAGCTATCTGTGGGCCCTTTATCGG
TTAGGTTAATTTCTGTGTGCTGTCAGCAGACAAGTGCAAATTGTAGTAGGCCCTCCTTTTCTGTAAAGATCTCTTGGGTT
ATCGATATATTACAGATCTCTGGGGTTATCGATATATGCGTGTAGCTCGTTGCCCTGGCAGCAGGCAGTGCCACTGCATT
TCATAGGTCCATTGTTCTGGCGGGGCGGTGCAATTAGAACAACTCCAACTCTCGTCGACCCAAAAGGACGGGCGATTTTG
TCTGCTTTTTATCCGTTTGGGTCGTCCGTCTTATTTATAATCTGTGTGATTTTGTTTGTTTTTTGTCTGTTTGGGTCATC
CGTCTTGTTTATAATTTGGGTCGGCAGTGCGTTTAATGTGCTGACCCATATTTGCTTGCGTGGT------------GTTT
TTGAACAAATATACACAAATTTTACATAGTTTTACAAGCAAACAAAAATAACATAGTTTCATAACCAAATAAATTTAGCA
TAG--TTTACCAGCCGAATAAAAATTAAATTATCTCAAATACA-T-T---AA--AAAAAGATACATCTATTGGTTGTCAA
CATGAGCTCACATATGCTCAACCAAATCATTTTGCAGCTGCATGTGAGTTTCTCAATCACGCATTTCATGATGAAATTGA
GTGAGGTGTGTAAACGTT---GTCG---CGCCTCCATGCTCACGCACAATATTCTCATCCTGAAATTGAAACCCTTGATT
ATAAATACATTTC-AAGCGCTCATCCTCTACGATCATATTATGCATGATCACACAAGCAGTCATCACCTCCCACAACTTC
TTAGTGCTTCAAGTTCTAGCAGGATACCAAACGATGTCCCATCGAGATTGAAGCACACCAAACGCACGCTCCCACATCCT
TCCTAGCACTCTCTTGCTCTTGAGCAAATCTCTTCCTCTTCTCACCGACAGGGTTGGAGATTGTCTTCACAATAGTGGTC
CACTGAGGATAGATA
>chr4B_1
TCCTACCGAATTCTATCAAACGTGATGCAACCACAACCATGTTGTCCAGCTGATGAGAGCCAGAGCTAAGGCTAGTCGGC
ATTAAACCAAATTCAAAGCAAAAGGCAAAAGGCAAAGGGACAAAAAAAATAATGAAACCGGGAAAAGGCTAACTCTTGGC
ATTGCATAAA----------------------------------------------------------------------
-------------------------------------------GCCGGATTCTACTCTATCAGCACATGTGTAGGGTGGG
GTGCCCCTTTTTTTTTAATGATTTTTTAGTTTAAAAAATGTCACCAAAATCTAAAACAAATGTTCAAACATTTGAAAAAA
TTATTTGGAATTTCGAAAAATGGTCCAAATTTTATAAATACCTCCCAGATTT--AAAAATGTTCATGAATTTGACCAATA
TTAATCAGATTTT---------------------------AAAATATGTTCCGAATTTTAAAAAAGATCCTGAATATCAA
AAGTTGTTCCTAAATTTTATAAGTATTCACGGATTA-AAAAAATATTCCAAAATTTCAAAATATAT--------------
----TTTTAATTTTTAAAAATTATTCAGGAAATTTCAAATG-AAATAAAAATGAAAAACGAAATGAATAATATAAGAAGA
AAAAGGAAACCAAAAAATAAGAAAT-----------------------AAAAAATGGTTCTATAAAGGTTCAACTGGTGG
GACGGAAAACCAGAAATGGGCTGGCCCATATAGCGGTACAGTTCTTGCGTTTCTCCCCCGCGTGTGACAGGGAGAATAGA
ATTGGGGCCGATCAGACGGTTAAAAAAAGCGGGAGCTCCTATTTGCCGCGTTCTGCGGCAAATACACGGCCCCTCGCAAG
CCGGCCCATTCAGTGCACATCGATATGATGGGGAAAAAATCGCAAAAAGGATAGTGCGCGTTGGTTGGGAATCGAACACG
TGGCTGCCTAATTGCGCTAGCTCGCTGCTAGCCACCAGGATCGAAGAGATTTGTAAACCAAAACACAACGGAACACTAAA
AGAAACTGATGACAGTATCAGACTTAACACAGTTCGACAAAATCCCGAATAATATTTTGAACATACGAACAATTTTTCAC
AAATACAACTTTTAGGAAATCGAAAAGTTTTTAAATTTGCCAAACATTTAGGACAATTCTTTAAAGCACAATTTTTTTTT
GAATTTTGAGATTTCGAAACAAAGAATAATTTCGAAATACCAAACAAATTTGAAGCACGGACATTGATTACATGAACAAA
AATTTGGAATCTGATTTTTTTTGAAACCCTTGATTTCTTTTGGTGTAAAACACGAATATTTTAAAAACACAAACCAGTTT
AGAATTATCAGAACAATGTTTTAAAAATCCTAGAATTTGTTTGAAAGGCAAACAAATCTTAAACATTTTCTTATTTCCGA
AACTTTTAAACATTTTTTGTAAAATGCGAACAATTTTATAATTTTGAGTATATTTTTCGAAAACTGTACTTTTTTGGAAA
CGCAAGTTTTTTTGAATATCTTGAGTTTTTTTGACAAAAATGAGAACAAAAGAAAAAATAAATTGAAAAACCAAAAAAAA
GAGCATAAAAAACAAAAAAAAAGAAAAGGAAAAAAAGAAAAACGAAAAGAAGAAGGAAAACAAAAAAGAAACTAGAAAAA
CCGGTTCAAGAAACTTCTGGAAGGTTCGCAAATCAGGCCAGGAACCATCCAGAAGGTTCCCCAAACTGGAAAATTGATCC
CACGTAGAAAGATGCTAACTGGGCCGGCCCAGGTATCATCGAACATGTGCAATAGGTCGACATTTGCTGCATTCTCCCAA
TTTTGAGAATCAATCCTTCTCTTAAAATGTTGAATTCATATTATTTTTTGCAATCTTAATTAGTTATGATTTTCAAAAAT
ATGGGTTCAAGATAAGATTCTGGAAGAAACTGGAGGGAGGACCGAAGATTCCGGGAGAATCGGCCGAAAGAATTGGGCTT
TCATAAAAAGCAACTGCGC---------CCTTTGGGGAATTGGGCTTCTCATTTGTGCAGACAATGA-CGATAACCGGGA
TTCACGCTCGGCCCAGTCAA-GC------CTATACCAAACCCTCTGTCCCTTCCCGTCCTCCTCCTCTCTCCATACTTCC
CCTCTCCAGGGTTCGTTTCCCCTCGGAGCCGAAACCCTAGCCGCCGCCGCCGAC------------CACCGCGAGCAAGC
TCAGATGGGAGGCAAGTGCCCACACCGCAAGGTGAAGAAGCGCCGTCTCAACTGCAAGCAGGTGCGCCGCGGCAAGTTCC
TCGTCAAAGCCGACGACGCCGTCTACGACGAGCTCGTCAAGCTGGCCGACCAGGGCAAGGATTCCGAGGGCAAGGCGCTA
CCCGTCGACGAGGACCTCCCCGGCATGGGCCAGTTCTACTGCCTCCACTGCGAGTATGCCTCCCAACTCTACCACTAGTC
TGCTTCGATTTCCTCCATCAGTTTCAAGCACAAAT------------------------------------GTGATGGTC
CTGTTTACATGCCGTTACAAAGATAGTACGGCGTTTTGGGGTCAATTAGGATGTGATTAGTTGCATATACTGTGAAGTAG
TATA--TATGTTGCTGCACATATGCTATGGGAAGATGTAATAGTATCTGTGTCTGAATACTTGTGGATCTATGGTTTGTT
TTGACAGTGCCTTGATTGAATCAAGATTGGTAGGTGGGCAACTGTACTTGTGAATCATTGTATCACACTATGATTTGTTC
TCTGCATG-TGAGGAACTTCATTTCTCAGTTTCTCAT-ACAGCAATGCAACTCTATTTCCTTCTGATTATTTATTTAGTA
CTTGTTCTGTTGGTGGCTGCAGTCGGTACTTCGCGGATGAGACCGTAAAGGAGGATCACTACCGCTCAAAGCGCCACAAG
AAAAGGTAATTCCCCTTGTTCTGAGTCAACTTATTAAAGCTTCTGTTCAGAGTTATATGATGCACCAGAGCCTCCTGAGC
TGGGGCACCTGCGTCGATGCCCGCATCAAA------TACCAATCCGAGAATCAGATTTGGAGAGATAATTTTAATATGCC
AGTGATCAAGT----AGCAATATGTTGGCCCAGCGTGACTAAGCCTAGCACATCCCACAGCCATGCCTCCTGTGCAGCAC
ACTTGCATATGACGTTCCTTTCCTCTCT---------CACTGTGTTGGTGATTGCCCATCAA-CAAGAGAAACC--TAAT
GCATGCACTATGTTGCATGATGCTATAGCTGAACAGAGGAGACTCTGCTCTAAATTCTCTCGCACAGTGTTGATGAAGTA
ACTGTTTAATTGAATCGCGTGTGAGTTTTAGATGTTCAAGA---------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------GTGAATTTTATTGCGTT
AATGTAATGCAGTTGCTGAGAAGTAAGAACATTGGCTAGTGTTTATTAAGAATTTTAGCCTGATGAAAGATTTTTAATTC
TGCTGGATTTAATTTGTGGACATAAG------CATAGCTCAAACATGTCTCCGGTTCTCCACGAATAACTTGACCTTGAC
AGAAACATATGAAGCTGTAGAAGGATCTTGATGTGTGTAAGTGGGCATTGTGTTAGTATCCTATCTAATCACTACCTTTT
GATTCATGTAGGGTCAAGCAGTTGTCTGGGCCAGCCCCACACACGCAAATAGATGCCGATCTCGCTGGTGGAATGGGAAT
GCCGGACAATGGCTTGAAGCTCATGTCTTCCTGAACTTCATGATCGTTGTTTGATGTT-TTATTGCTGCTGCTATACATC
TGTACCAACTTTGCTTGATTTGTAACTTGCAAATAGTCTCTTTGGTCGAAGAGGTTAGGATTTTACATTGCTGTATCTGC
CTCATGGTTGCCAACTTTTATCTAAATTGAGAACGAGTGACTTATCTGCGTCTGGGACAAAATGTCAATGATTTAGCAGC
AGATTATGCACTATGAATTAGAACTCCATATTGGTATTCTCATCAGCTTGAAAACAAGCTATCTGCAGGCCCTTCGTCGA
TTGCGTTAATTTCTACTTGCTGTCATCAGACAAGTACAAATTATAGTAGG---TCCTTTTCTGTTGATATTTCTTGGGTT
ATCGATATAT----------------------------------------------------------------------
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>chr4A_855
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-----------------------AAAAAG---------------------------------------------------
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---------GCAACTGCACGCAGCTTTTCCTTTGGGGAATTGGGCTTCCCATTTGTGCCGACATTGA-CGACAACC-GGC
TTCGCGCTCGGCCCAGTCAAAGC------CTATACCAAACCCCCTCTCTCTTCCCGTCCTCCTCCTCTCTCCATACTTCC
GCTCTCCACGGTTCG-TTCCCCTCGCAGCCGAAACCCTAGCCGCCGCCGCCGCCGCCGCCGCCGATCACCGCGAGCAGGC
TCAGATGGGAGGCAAGTGCCCACACCGCAAGGTCAAGAAGCGCCGTCTCAACTGCAAGCAGGTGCGCCGCGGCAAGTTCC
TCGTCAAGGCCGACGACGCCGTCTACGACGAGCTCGTCAAGCTGGCCGACCAGGGCAAGGATTCCGAGGGCAAGGCGCTG
CCCGTCGACGAGGACCTCCCCGGCATGGGCCAGTTCTACTGCCTCCACTGCGAGTATGCCTCCCAACTCTACCACT---T
TTCTTCGATTTCCTCCACCAGTTTCAAGCACAAAT------------------------------------TTGATGGTC
CTATTTACATGCTGTTACAAAGATAGTACGGCGTTTTTGGGTCAATTAGGATGCGATAAGCTGCATATATTGTGAAGTAG
TAGTAGTATGTTGCTGCACATATGATACGGGAAGCTGTAA---CATCTGTGTCTGAATACTTGGGGATCTATGGGTTGTT
TTGACAGTGCCTTGATTGAATCAAGATGAGTAGGCAGGCAACTGTACTTGTGAATCGTTGTATCACACTACGATTTGTTC
TCTGCCTGTTGAGGAACTTCATTTCTCAGCTTCTAGCAACTGGAACGCAATTCAAGTTCCTTCTGATTATTTAGTG----
CTTGTTCTGTTGGTGGCTGCAGTCGGTACTTCGCGGATGAGACAGTGAAGGAGGATCACTACCGCTCAAAGCGCCACAAG
AAAAGGTAA-TCCCCTTGTTCTGAGTGAACTTGTTAAAGCTTCCGTTCAGTGTTATATTATGCACCAGAACTCCCTGAGC
TGGTGCACTTGCGTCGATGCCCGCATCCAA------TACCAGTCTGAGAATCAGATTTGGAGAGATAATTTAAATATGCT
GG-------------------------------------------------ATCCCACAGCCACGCCTCCTGTGCAGCAC
ACTTGCATATGACGTCCCTTTCCTCTCTCATGACATGCACTGTGTTGGTGATTGCC-ATCAATCAAGAGAAACC--TAAT
ACATGCACTATGTTGCATGCTGCTATAGCTGAACAAAGGAGACTCTGCTCTAAATTCTCTCGCACGTTATTGGTGAAGTA
ACTCTTTATTTGAATCACGTGTAAGTCTTAGATGTTCCCAAATGATAAGTCCCACACGTGTGGCACGAATCAATCCGACC
CTGATGTTTTTTACAACTAAAGTTGACATCCAAAAACAAAAAACAAACCCCAAAAAACTGAAACTTGTCATCCGAAAAGA
AAGTTGCCATCCTCGCGTCACTAAACTTGCCATAAAAAACGATCGCAGTTGCCATGTGTTTGTGCCAATTTTATTGTGTT
AATGTAATACAGTTGCG--GAAGTCAGAACATTGGCCAGTGTTTATTAAGAATTTTAGACTGATGAAAGACCTTTAATTC
TGCTGGATTTGATTCATAGACATAAGCAGGCTCATAGCTCAAACATATTTCTGATTCTCCACGAATAACTTG--CTTGAA
AGAAACATACGAAGCTGTAGAAGGATCTTGATGTGTGTAAGTGGGCATTGTATTAGTCTCCTATCTAATCACTGCCTTTT
GATTCATGTAGGGTCAAGCAGTTGTCTGGACCAGCCCCACACACGCAAATAGATGCCGATCTCGCTGGTGGAATGGGAAT
GCCGGACAACGGCTTGAAGCTCATGTCTTCCTGAACTTTGTGATCGTTGTTTGATGTTTTTATTGCTGCTGCTATACATA
TGTTCCAACTTTGCTTGATTTGTAACTTGCAAATAGTTA-------------------GATTATACATTTATGTATCTCC
CTCATGCTTGCCAGCATTTATCTAAATTGAGAACGAGTTACCTATCCGCGTCTGGGACGGAATGTCAATGATTTAGCAGC
AGATTATGTACTATGAATTGGAACTCCATAGTGGTATTCTCATCAGCTTGAATACAATCTATCTGTGGGCCCTTTATCGG
TTAGGTTAATTTCTGTGTGCTGTCAGCAGACAAGTACAAATTGTAGTAGGCTCTCCTTTTCTGTAGAGATTTCTTGCGTT
ATCTATATAT---------------------------GCTTGTAGCTCGTTGCCCTGGCAGCAGGCCGTGCCAAAGCATT
TCATAGGTCCATTGTTCTGGCGAGGCGGTGCCATTAGAGCAACTCCACCG--CGTCGACCCAAATGGACG----------
---------------------------------------------GTGATTTTGTTTGCTTTTTGTTCATTTGAATTGTC
CGTCCTGTTTATAATTTGGGTCAGCAGTGCGTCCAACGTGCCGACCCATATTTACTCGTGTGGTTGGCTTGCTGTCGTTT
TTGAACAAATATACACACATTTTACATAGTTTCACAAGAAAACAAAAATAGCATAGTTTCACAATCAAATAAATTTAGCA
TAG--TTTACAAGCCGAATAAAAATTAAATTGTCTCAGATACA-TTTAAAAA--AAAATTATACATCTATTGGTTGCCAA
CATGAGCCCACATATGCTCAACCAAATCATTTTGTAGCTGCATTTGAGTTTCCCCCTCACGCATTTCATGATGAAATTAA
GTGAACTGTGCAAACATTGCCGCAC---CTCCTCCATGCTTAGGCACGTCATTCTCACCCTGAAACTGAAATCCTT-ATC
ATAAATACGTTTC-GAGCGCTCATCCTCTACGATCATATTGTGCATGATTACACAAGCAGTCATCACCTCCCACAACTTC
TTGGTGCTCCAAGTTCTAGCAGGATACCAAATGATGCCCCGTCGAGATTGCAGCACACCAAACGCACACT-CCACATCCT
TTCTAGCACTCTCTTGCTCTTGGGAAAATCTCTTCCTCTTCTCACCGACAGAGTTGGAGATTGTCTTAACAATGGTGGTC
CATTGAGGATAGATA
>chr5D_3115
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------------------------------------------------------------------------------TC
CGCCCTGTTTATTTTCTGGGTCGGCAGTGCGTCCAACGCGCCGACCCATATTTGCCGGCGTGGCCGCCG---------TT
TTCAACAAATATGCACACATTTTACATAGTTTCACAAGCAAACAAAAATAGGATAGTTTCACAACCAAATAAATTTAGCA
TAG-TTTTACAAGCCGAATAAAAATTAAGTTGTCTCAAATAAA-TGTG--AA--AAAAAGATACATCTATTGCTTGCCAA
CATGAGCCCACATATGCTCAACCAAATCATTTTGCAGCTGCATGTGAGTTTCTCAATCACGCATTTCATGATGAAATGGG
GTGAACTGTGCAAATGTT---ATCG---CTCCTCCATGCTTAGGCACAACATTCTCACCCTGAAACTGAAACTCTTGATC
ATACATACGTTCC-G--CGTTCACCCTCTACGATCATATTGTGCATGATCACACAAGCAGTCATCACCTCCCACAACTTC
TTGGTGCTCAAAGTCCTAGTAGGATACCGAACGATGCCACATCGAGATTGCAGAACATCAAAGGCACGCT-CGACGTCCT
TCCTAGCACTCTCTTGCTCTTGGGCAAATCTTCTCCTCTTCTCTCCGAGA--GTTGGGGATTGTCTTCACAATAGTGGTC
CACTAAGGATAGATA
>chr7D_3115
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------------------------------------------------------------------------------TC
CGCCCTGTTTATCATTTGGGTCGGCAGTGCGCCAAACACGCTGACCCATATTTGCCGGCGTGGCCGGCTGACCGCC-TTT
TTCAACAAATATGCACACATTTTGCATAGTTTCACAAGCGAACAAAAATAGCATAGTTTCACAACCAAATAAATTTAGCA
TAG-TTTTACAAGCTGGATAAAAATTAAATTGTCTCAAATACA-TGTG--AA--AAAAAGATACATCTATTGGTTGTCAA
CATGAGCCCACATATGCTCAACCAAATCATTTTGCAGCTGCATGTGATGTTCCCAATCACGCATTTCATGATGAAATTGG
GTGAACTGTGCAAACGTT---GCCG---CTCCTCCATGCTCAGGCACAACATTCTCGCCCTGAAATTGAAACCCTTGATC
GTAGATACGTTCCAG-ACGCTTATCCTCTACGATCGTATTGTGCATGATCACACAAGCAGTCATCACCTCCCACAACTT-
--GGTGCTCCAAGTCCTAGCAGAATACCGAACGATGCCCCATCGAGATTGCAGAACACCAAAGGCACGTT-CGACGTCCT
TCCTAGCACTCTCTTGCTCTTGGGAAAATCTTTTCCTCTTCTCTCCGACAGGGTTGGGGATTGTCTTCACAATAGTAGAC
CACCGAGAATAGATA
>chr2D_3180
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---------------------------------------------------------------T------------GTTT
TTGAACAAATATACACACATTTTGCATTGTTTCACAAGCAAAC--AAAAAAAATATTTTCACAACCAAATGAATTTAGCA
TAG-TTT-ACAAGCCGAATAAAAATTAAATTGTTTCAAATACA-TATT---A--AAAAAGATACATCTATTGGTTGTCAA
CATGAGCCCACATATACTCAACCAAATAATTTTGCAGCTGCATGTGAGTTTTCCAATCACGCATTTCTTGATAAAATTGG
ATGAACTGTGCAAACGTTGCCGCTC---CTCCTCCATGCTCAAGCACAACATTCTCACCCTGAAACTGAAATCCTTGATC
GTAAATACGTTCC-GGGTGCTCATCCTCTATGACCATATTGTGCATGATCACACAAGCAGTCATCACCTCCCACAACTTC
TTGGTGCTCCAAGTTCTAGTAGGATACCGAAAGATGCCCCATCGAGATTGCAGAACACCAAAGGCACGCT-CGACATCCT
TCCTAGCACTCTCTTGCTCTTGGGCAAATCTTTTTCTCTTCTCTCCGACAGGGTTGGGGATTGTCTTCACAATAGTGGTC
CACTGAGG-------
>chr2A_3181
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----------------------------------------------------------------------------GTTT
TTCAACAAATATTCACACATTTTGCATAGTTTCATAAGCAAACAAAAATAGTATAGTTTCACAACCAAACAAATTTAGCA
TAG-TTTTACAAGCCGAATAAGAATTAAACTGTCTCAAATACATTTT---AA--AAAAAGATACATCTATTGGTTGCCAA
CATGAGCCTATATATGCTCAACCAAATCATTTTGCAGCTGCATGTGAGTTTCTCAATCACGCATTTCATGATGAAATTGA
GTGAACTGTGCAAACGTTGCCGCTC---CTCCTCCATGCTTAGGCACAATATTCTCACCCTGAAACTGAAACCCTTGATC
ATAAATACGTTCC-GGACACTCATCCTCTACGCTCATATTGTGCATGATCACACAAGTAGTCATCACCTTCCATAACTTC
TTGGTGCTCCAAGTTCTAGCAGGATACCGAACGATGCCCCATCGAGATTGCAGAACACCAAAGGCACGCT-CGACATCCT
TCCTAGCACTCTCTTGCTCTTGGGCAAATATTTTCCTCTTCTCTCCGACAGGGTTGGGGATTGTCTTCACAGTAGTGGTC
CACTGAGGATAGATA
>chr3B_3181
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----------------------------------------------------------------------------GTTT
TCGAACAAATATACATACA---TGCATAGTTTCACAAGCAAACAAAAATAACATAGTTTCATAACCAAATAAATTTAGCA
TAGTTTT-ACAAGCCGAATAAAAATTAAATTGTCTCAAATACA-TTT---AA--AAAAAGATACATCTATTGGTTGCCAA
CATGAGCCCACATATGCTCAACGAAATCATTTTGCAGCTGTATGTGAGTTTTCCAATCACGCATTTCATGATGAAATTGG
ATGAACTGTGCAAACGTT---GCTG---CTCCTCCATGCTCAGGCACAACATTCTCACCATGAAACTGAAACCCTTGATC
GTAAATACGTTCTGG-ACGCTCATCCTCTACGATCATATTGTGCATGATCACA--AGTAGTCATCACCTCCCACAACTTC
TTGGTGCTCCACGTTCTAGCAGGATACCGAACGATGGCCCATCGAAATTGCAGAACACCAAAGTCACGCT-CGACATCCT
TCCTAGCACTCTCTTGCTTTTGAGCAAATCATTTCCTCTTCTCTCTGACAGGGTTGGGGATTGTCTTCACAGTAGTGGTC
CACTGAGGATAGATA
>chr6A_3181
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----------------------------------------------------------------------------GTTT
TTCAACAAATATACACACATTTTGCATAGTTTCATAAGCAAACAAAAATAGCATAGTTTCACAACCAAATAAATATAGGA
TAG-TTT-ACAAGCCGAATACAAATTAAATTGTCTCAAATACA-TTT---AAAAAAAAAGATACATCTATTGGTTGCCAA
CATGAGCCCACATATGCTCAAGCAAATCATCTTGCAGCTGAATGTGAGTTTCCCAATT-CGCGTTGGATGATGAAATTGG
GTGAATTGTGCAAACGTT---GCCGCTACTCCTCCATGCTCAGGCACAACATTGTCACCCTGAAACTGAAACCCTTGATC
GTAAATACGTTCC-GAGCGCTCATCCTCTACGATCATATTGTGCACGATCACACAAGCAGTCATCACCTCCCACAACTTC
TTGGTGCTCCAAGTTCAAGCAGGATACTAAACGATGCCCCATCGAGATTGCAGAACACCAAAGGCACGCT-CGACATCCT
TCCTAGCACTCTCTTGCTCTTGGGCAAATCTTTTCCTCTTCTCTCCGACAGGGTTGGGGATTGTCTTCATAATAGTGGTC
CACTGAGGATAAATA
>chr3D_3181
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----------------------------------------------------------------------------GTTT
TCGAACAAATATACATACATTATGCATAGTTTCACAAGCAAA---AAAAAACATAGTTTCATAACCAAATAAATTTAGCA
TAGTTTT-ACAAGCCGAATAAAAATTAAATTGTCTCGAATACA-TTT-----AAAAAAAGATACATCTATTGGTTGCCAA
CATGAGCCCACATATGCTCAACCAAATCATTTTGCAGCTGCATGTGAGTTTTCCAATCACGCATTTCATGATGAAATTGG
ATGAACTATGCAAACGTT---GCTGCTCCTTCTCCATGCTCAGGCACAACATTCTCACCATGAAACTGAAACCCTTGATC
GTAAATACGTTCTGG-GCGCTCATCCTCTACGATCATATTATGCATGATCACA--AGTAGTCATCACCTCCCACAACTTC
TTGGTGCTCCACGTTCTAGCAGGATACCGAACAATGCCCCATCGAGATTCCAGAACACCAAAGTCATGCT-CGACATCCT
TCCTAGCACTCTCTTGATCTTGGGCAAATCATTTCCTCTTCTCTCTGACAGGGTTGGGGATTGTCTTCACAGTAGTGGTC
CACTGAGGATAGATA
>chr5D_3204
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-------------------TTTTACATAGTTTCACAAGCAAACAAAAATAACATAGTTTCACAACCAAATAAATTTAAAA
TAGTTTT-ACAAGCCGAATAAAAATTAAATTGTTTCAAATACA-TTT---AA--AAAAAGATACATCTATTGGTTCTCAA
CATAAGCCCACATATGCTCAACCAAATCATTTTGCAGCTGCATGTGAGTTTCCCAATCACGCATTTCATGATGAAATTGA
ATGAAATGTGCAAACGTT---GCAGCTCCTCCGCCATGCTCAGGCACAAAATTCTCACCCTGAAACTGAAACCCTTGATC
GTAGATACGTTCC-G-ACGCTCATCCTCTATGATCATATTGTGCATGATCACACAATCAGTCATCACCTCCCACAACTTC
TTGGTGCTCCAAGTTCTAGCAGGATACCGAATGATGCCCCATCGAGATTGCAGAACACCAAAGGCACGCT-CGACGTCC-
TCCTAGCACTCTCTTGCTCTTGGGCAAATCTTTTTCCCTTCTCTCCGACAGGGTTGGGTATTGTCTTCACAATAGTGGTC
CACTGAGGATAGATA
>SNPs
----S---------------S--------------------------SS----S-S------S-S---------------
--------------------S---------S------------S---------------S-S----S-------------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------SS-S---S----S-SSS-S----
--------S-------S-------SS-SSSS-----------S-------SS----S--S----SSSS------------
--------------S-------S----------SS---S-SS----------SS--------------------S-----
------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------SSSS-SSSSSSSSSSS-S----
--SS----S---S------S--S-----SS-----SS-------S-----------S----SSSS-SSSSSSSSSSSSSS
SSSS---S-S----S-S---S------SS-----SS---SSS---S---S-S------S--------S--S---------
---S-S----------S---SS--SSSSSSSSSSSSSSSSSSSSSSSS-----------SSSSS----------S-----
-------S--------------------------S-S---SS---S--------S----S---SSS--------------
------S------S--------S-----S---------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------S-------------S----------------------S--SSS------------
-----------------------SSSSSS---------------------S-----------------------------
------------------------------------------------------------------S-------------
---------------------S--------------S-------------------------------------------
-------------------------------------------------------------------------------S
---------------------------------------------------------------------S----------
------------------SSS-S--SSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
-------S-----------S-S------S------------------------------S-----S--S--S--------
------------------S---------S-------------------------------------------S-------
-------------S-S-----------------------------------------S----------S-----S-----
-S-------------S------------------------------SS--------------------------SSSSS-
---------S----------------------------------------------------------------------
-------S----------------------------------S-------------------------------------
---------------------S-S----SSSSSSSS------------S-------------------------------
------S-SS-SSSS-------SS---------S-----S--S----------------------S-----------S--
------------S---------------------------------S----S----------------------SS----
---------S---------------------------------------------------S-S-------S--------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S--SS------S
--------S--------S-----S--------------S-----S-S---------------------------------
S-SSSSSSS---S---S---------------------------------------------------------------
--S-------------------S--------------S-------------------------------S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------S-----------S---S----------------------S--------S-----
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S---------------S-------------S----S---------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------------------------S------SS-----
----------------------S--------S------S--------S-SSS------------S-----SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-------SSS----SS-SS--
----S---------------------------SS--S-------------------S-----------------------
-----------------S--------------S-----------------------------------------------
----------S--------------------S------------------------------------------------
-------S------------------------------------------------------------------------
----SS----S------------------S------------S--------------S---------------------S
--------S-----S-----------------------------------------------------------------
--S-----S---------------------------S-------------S-------------------S---------
--------------------------------------------------------------------------------
---------------
>forward_281
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---------------------TCACTCCATCATCGAGGGGT---------------------------------------
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---------------
>reverse_2882
--------------------------------------------------------------------------------
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-GTGCCTGTGAGGAGCTTCAT-----------------------------------------------------------
--------------------------------------------------------------------------------
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---------------
>forward_2550
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------CGAGTATGCCTCCCAACTCC----------
--------------------------------------------------------------------------------
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---------------
>reverse_4574
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------CGTTTGGGTCGTCCGTCTTA-----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
