>input_sequence_44256
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-----------------------------------------AGCTCCTGCAAATCACACAGCTAGCAGAATGGGTAGAGG
CAGCTCGCTTGTATTGGTTCTCTTGGTGATCCTACTCCTCAACAACGACCACGCCTCAGCTGTAGAAACCTTAGCTTGGA
ATGATGCTGGCAGCACCACCACCACCACCATGCCTCCGTGGGTGCAACCCAGGGACCGGCAGCTGTTGGACTTGACGGTC
GGCGATATGCAGGTGGACATGGTGGTTGCCAAGGACGCGAGCGGTCACTTCAGCACTGTCAGCGAGGCCCTGGATGCAGC
TCGGCCGGTGAGAGGGAAGAGGTACGTGATATACATAAAGAGGGGAATATATCGTGAGGAGGTGGTGATAAGGAAGAACA
ACATAGCGTTGATTGGGGATGGAATCAATGAGACGGTAATCTCCGTCAACAAGAGTAGAAGTGGTGGCGGGTGGGCCTCG
TATGACACGGCCGTCGTTTGTAAGTGTTTCAAACAAGCTTTATTTGTTGCATGCTTACTAGTACTACTGCTGCTTAATTG
GCTCATCTCATTTTCTTGATTTTTTTATATTATAAGTCTTATTTTTCACTTCTTTCATTGGCTTAATATATAGTAGCTAT
ATATCTTGCATTGGCTCGACATAAGCTTAATTTATTTGCGCGCATGCATGCAGATGCCAAAGGCACAATGCTCATGGCGC
GTGACCTCACCATTGAGAATACGGCGGGCAGGGAGGCGGGTGCAGCAGTGGCTCTCAGGTCAGACTCCAAACATTCGGTG
TTCTATCGCTGCGAGTTCAAGGGATATGAGGACACGCTCCTCGCCGACTCCAATCGCCAGTTCTACCGGGAATGCATTAT
CTCCGGAACCGTGGACTTCACTTACGGCAATGCTAAGGCCGTGTTCCAGGAGAGCCTTCTCCTTGCACGTGCCCCGCTGA
AAGGAAAACACAATGTTATTACAGCCCAAGGCCGCGACGGTCCTGACGGTTCCTCAGGCTTCTCGTTCCAGAATTGCAGG
GTGACATCACATGAAGATCTCAACGGTGCCGAGACGTACTTAGGTAGGCCGTGGAGGAACCATTCCCATGTGGTCTTCAT
GCAGTCTTTCCTCGACGGCATCGTGCATCCCAGCGGATGGGTTCCATGGGACAAAGCAGACGGCAACGTCCCGCCTACAG
TTTATTACGGCGAGTTCGCGAACACAGGCCCTGGGGCAAACTTGAGCAAGCGTGTGCCCTGGCTCCACGTTATGGACGCT
GGTCAAGCTGAGCATTGCACGGGGAAGCGATTCATCCGTGGGGACGAGTGGCTCAACGCCACCGGAGTCGCGTACCAGCC
TGGGCTGTAGACGACTAGCTAGTACAAGCCGCACTCAAACACTTGTGTGCGTACGTGTCTATCTGCAAGTGCATGCGATA
AGTATCCAAATAAGAGTTGAGTGCATATATAGGCCGGCCGGGCCTAGTACTGCCTTAACTAGGTCTCAGTCGACATGCCT
ATGCTATGCATGCATGCATGCTTAATTGTGCCTCTGTGTGTGTATGGGAAGGAACTGGGGCATGTGCATCCTCCACATGG
CCTCGTCAGAAAAAATAATGTGTCTTTATTTCGTTTTGCATGTGTGTATTTGTCTTTTGTCTTCCACATGTCTCTGTCTG
TCTGTCGAGTGTCCTCTCTTGATTGTTGTCTCTACTTACTAATTTTCTATCATAACTAGATGATACCCCTGCGGGAATTT
ATAGTAATAACTTATCAAGAATAAA-------------------------------------------------------
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----------------------
>chr5A_1_TraesCS5A01G434700
CAGGCTTGCCGTCGCCATGGAGCACGGGGAGAAAGAGAGACAGAGGAGAGTAGAGTGGGCAAAGGGGGAGAATGAAGTGG
ATAAGGGACCCGTGCCGTTTTGACCGAGACGGTGCGTCCGTTGCCACTGTAGCATCGTCAGACGACGTGAGCTCGTGGGC
GTTAAGCCACGTCCTCAGAAACGGGCCCCACCTATCATAATAGAGGTTAAAATGCCCGAACAGATGGTTAGGTGTTTTCT
GCAAGTGATTAGGACCAAAATCAGTGTATTCTGGCACAAAATCGTAGAAGAGTCTTTTCTGCAACCCTAGGCTTCAATGT
GGTGGTTTTCTGCAATTCACTCCTCTAGGACCAAAATTAGTGTTTTCTGGTTCGTGTAGGCATAAACAAAAGGGAAAACA
AAGTAAAGTACAGAGTTCGCGGCAAATAAAACTAATGACACAGCTTGATCACATAA-AAAATAGTTCTTGATCACATAAA
AAGTAGTTCTAGTAAGTCTAGTATGTATGAACTATGAAGTGGATCTTAAAACTCATTGAACAGTTTTTCTGCTGGGGAAT
GAACTGCAGTAGAACAAAGCAAATCTTGCAGCAGTGGAAGATATGTTCAGCAAATCTTGCAGCAATTTTTGAGCAATCAG
CAGCTACCACTGAGCTCGAGCCGACGAGGTGCATGAGTTGGCTCGTTTCACCAGATATGTTACCGATCCGAGCCGACTAG
GAGACGGAGACGTGTTTAACTCCAACAGCACCTAACACTACACCTAGTAGTAGTACTTTACTGCTCGCATTGAATTTGAA
TGAACAGTGAAGGCCTCGATGCCGGCCTAACAAGGCAGCCATGTTCACTTTTGGAGCCCATGTGCCTTGTTTACTTAGGA
TTGGGCAGAATCAAAATATTCGGCTCTGTGTCCCGGAGAAATAGAAGGAGAGCCATGACCCATGAGCTTCTCTATTGCTA
CAGTATATATATGTATGGCCACGTACAATCCGATCTCAAGCAGCTCCTGCAAATCACACAGCTAGCAGAATGGGTAGAGG
CAGCTCGCTTGTATTGGTTCTCTTGGTGATCCTACTCCTCAACAACGACCACGCCTCAGCTGTAGAAACCTTAGCTTGGA
ATGATGCTGGCAGCACCACCACCACCACCATGCCTCCGTGGGTGCAACCCAGGGACCGGCAGCTGTTGGACTTGACGGTC
GGCGATATGCAGGTGGACATGGTGGTTGCCAAGGACGCGAGCGGTCACTTCAGCACTGTCAGCGAGGCCCTGGATGCAGC
TCGGCCGGTGAGAGGGAAGAGGTACGTGATATACATAAAGAGGGGAATATATCGTGAGGAGGTGGTGATAAGGAAGAACA
ACATAGCGTTGATTGGGGATGGAATCAATGAGACGGTAATCTCCGTCAACAAGAGTAGAAGTGGTGGCGGGTGGGCCTCG
TATGACACGGCCGTCGTTTGTAAGTGTTTCAAACAAGCTTTATTTGTTGCATGCTTACTAGTACTACTGCTGCTTAATTG
GCTCATCTCATTTTCTTGATTTTTTTATATTATAAGTCTTATTTTTCACTTCTTTCATTGGCTTAATATATAGTAGCTAT
ATATCTTGCATTGGCTCGACATAAGCTTAATTTATTTGCGCGCATGCATGCAGATGCCAAAGGCACAATGCTCATGGCGC
GTGACCTCACCATTGAGAATACGGCGGGCAGGGAGGCGGGTGCAGCAGTGGCTCTCAGGTCAGACTCCAAACATTCGGTG
TTCTATCGCTGCGAGTTCAAGGGATATGAGGACACGCTCCTCGCCGACTCCAATCGCCAGTTCTACCGGGAATGCATTAT
CTCCGGAACCGTGGACTTCACTTACGGCAATGCTAAGGCCGTGTTCCAGGAGAGCCTTCTCCTTGCACGTGCCCCGCTGA
AAGGAAAACACAATGTTATTACAGCCCAAGGCCGCGACGGTCCTGACGGTTCCTCAGGCTTCTCGTTCCAGAATTGCAGG
GTGACATCACATGAAGATCTCAACGGTGCCGAGACGTACTTAGGTAGGCCGTGGAGGAACCATTCCCATGTGGTCTTCAT
GCAGTCTTTCCTCGACGGCATCGTGCATCCCAGCGGATGGGTTCCATGGGACAAAGCAGACGGCAACGTCCCGCCTACAG
TTTATTACGGCGAGTTCGCGAACACAGGCCCTGGGGCAAACTTGAGCAAGCGTGTGCCCTGGCTCCACGTTATGGACGCT
GGTCAAGCTGAGCATTGCACGGGGAAGCGATTCATCCGTGGGGACGAGTGGCTCAACGCCACCGGAGTCGCGTACCAGCC
TGGGCTGTAGACGACTAGCTAGTACAAGCCGCACTCAAACACTTGTGTGCGTACGTGTCTATCTGCAAGTGCATGCGATA
AGTATCCAAATAAGAGTTGAGTGCATATATAGGCCGGCCGGGCCTAGTACTGCCTTAACTAGGTCTCAGTCGACATGCCT
ATGCTATGCATGCATGCATGCTTAATTGTGCCTCTGTGTGTGTATGGGAAGGAACTGGGGCATGTGCATCCTCCACATGG
CCTCGTCAGAAAAAATAATGTGTCTTTATTTCGTTTTGCATGTGTGTATTTGTCTTTTGTCTTCCACATGTCTCTGTCTG
TCTGTCGAGTGTCCTCTCTTGATTGTTGTCTCTACTTACTAATTTTCTATCATAACTAGATGATACCCCTGCGGGAATTT
ATAGTAATAACTTATCAAGAATAAAATTAGAAATATATGAGAATGATACTCTCCTGACATACCAAACCTAGCAACAAATG
AGGGTGCCTGCACATTACAGTGAGGAAGTATGAGGGTGCCTGCACATTACAGTGAGGAAGTATGTAAATGAGTGTTGCAT
TTAAACACACATGACAACAACTTAGAACTAATTAAAATTTATGGTTATTCGAAAGAAACATGGATTAAAAACTCTCAGTG
TCATATTTATGGGTGCCTTGATCTAATGCATTGCACATTTGCATAATAGAAAGTCACTTGGCAAAAGATGCTTGTTTGTA
ACCCATTATAAAAATGATGATGGCAAAGTCTTCCATCTCCTTTTTTCTTAAATACATTCATGAAGCAAATATAGTAGTGA
AAGTACTCATATGATCCCAAGCTCCAGTGATCCCTACAAATGTAATTTCATTATGAAAATTTGCATGCATGTAGACAAAA
CATCAAAGTTTCTTGCCAAAACAATTCAGATTTTTTTAAAAGTTTTGCCTTTTTTTTTGGATTTTACTGTTCATCCGAGA
TCACTGTAGCTCGGGATCACATACTCCACCTCATGTATAATTCATAGCTTTAGTTTGCGACTTCCCTAAAATAGGCTATC
AATCCTATGAAAAAAATAAGAAGACACACCGAGATTTCATAGCGGAGCAATTTGGATTTCTGATCACCTTTGGGAACAAT
TCAAATAGGAAGATCTCTCGAAAGAGTAAAGATTATTACATCCGGTAACCAATTAATGGCTTTGCCAATGCCTTCGATGT
AGCCTGCATAGCAAGCCAAAGAAACAGTATAAATGGGACATGAATGATTTGATTATCCCCAAGAAAATGATGCACATATA
CGATTAATATCTTATCTAATAAAAAATGAGATCAAGCCAATGTTATAGACGCCTTCAAATGAAATTGATGCAA-------
--------------------------------------------------------------------------------
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------------------------------TCTTGACTAATGCAAATTCAGATGAACAACACGCTAATGCCCCAGAGTAA
AGTACATAGAGCCAAATGTAAG
>chr5A_367
--------------------------------------------------------------------------------
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----------------------------------------------CTGGTTCGTGTAGGCATAAACAAAAGGGAAAACA
AAGTAAAGTACAGAGTTCGCGGCAAATAAAACTAATGACACAGCTTGATCACATAAAAAAATAGTTCTTGATCACATAAA
AAGTAGTTCTAGTAAGTCTAGTATGTATGAACTATGAAGTGGATCTTAAAACTCATTAAACAAATTTTCTGCTGGGGAAT
GAACTGCAGTAGAACAAAGCAAATCTTGCAGCAGTGGAAGATATGTTCGGCAAATCTTGCAGCAATTTTTGAGCAATCAG
CAGCTACCACTGAGCTCGAGCCGACGAGGTGCATGAGTTGGCTCGTTTCACCAGATATGTTACCAGTCTGAGCCGGCTAG
GAGATGGAGACGTGTTTAACTCCAACAGCACCT-ACACTACACCTAGTAGTAGTACCTTACTGCTCGCATTGAA------
TGAATAGTGAAGGCCTCGATGCCGGCCTAACAAGGCAGCCATGTTCACTTTTGGAGCCCATGTGCCTTGTTTACTTCGGG
TTGGGCAGAATCAAAATCTTCGGTTCTGTGTCCCGGAGAAAGAGAAGGAGAGCCATGACCCATGAGCTTCTCTACTGCTA
CAGTATATATATGTATGGCCACATACAATCCGATCTCAAGCAGCTCCTGCAAATTACACAGCTAGCAGAATGGGTGAG--
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----------------------
>chr4A_2708
CTA-----------------------------------------------------------------------------
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-----------------------------------------------------------------------CGGGAATTT
ATAGTAATAACTTATCAAGAATAAAATTAGAAATATATGATAATTATACTCTCCTGACATAACAAACCTAGCAACAAATG
AGGGTGCCTGCACATTACAGTG--------------------------------AGGAAGTATGTAAATGAGTGTTGCAT
TTAAACACACATGGCAACAACTTAGAACTAAGTAACATTTATGGTTATTA-AAAAAAACATGGAATAAAAACTC--AGTG
TCATATTTATGGGTGCCTTCATATAATACATTGCACATTTGCATAATACAAAGTCACTTGGCAAAAGATGCTTGTTGGTA
ACCCATTATAAAAATGATGATGGCAAAGTCTTCCGGCTCCTTTTTTCTTAAATACATTCATGAAGCAAATATAGTAGTGA
AAGTACTCATATGATCCCGAGCTCCAATGATCCCCACAAATGTAATTTCATCATGAAAATTTGCATGCATGTAGACAAAA
CATCAAAGTTTCTTGCCAAAAAAAATCAGATTTTCTTGAATTTTTTACTA-TTTTTTTCGATTTTACTGTTCATCTAAGA
TCATTGGAGCTCAGGATCACATACTCCACTTCATGTATAATTCATAGCTTTAGTCCGCGACTTCCCTAAAATAGGCTATC
AATCCTATGAG-AAAATAAGAAGACACACCGAGATTTCATAGCAGAGAAACTTGGATTTACGATGACCCTTGGGAACAAT
TCAATTAGGAACATCTCTTGAAAGAGTAAAGATTATTACATCCGTTAACCAATTAATGGCTTTGTCAATGCCTTCGACAT
AGCTTGCATAGCAAGCCAAACAAAAAATATAAATGGGACATGAACGATTTCATTGTCCCCAAGAAAATGATAAACATATA
TGATTAATATATTACCTAATAAAAAATGAGATCAAGCCAATGTTATAGACACCTTCAAATGAAATGATACATCAAAGTAG
CGAGAAAAATAGGACATGTTTGAAATCTTAGCTGGCTAATGCAATTCCATTTATAGATATGAGCAATCAATAAGTGTCTG
TGCAGTTTTACCGCAGGTATCTACACACATGTAGCCTTGCAAAAGTACACATCCTGTCCTGGGGGTTTCCATTGTGGCGA
GCACTTGACGTAGACATAAATAAGCAACTCTAGTGGCCCTGAAAAGGTAGAAGACACACTCATACATTTCTATTAGCAAT
ATTAAATGTGATGAAACAAATTGATGAAGCTAATATGTCTAAAGTCGATGCCAGTAGCAATAGACTGTTAAGAGAATGAA
TAGCAAGAAATATAAACCACCAGAGTGCAAATGAGATATGAAAATGAAAAAATCTTATAAATTTGGCATACCTTTCTTAA
CTATACTGTTGTCAGATACATCTAAAATGTAAATCCTGTGGCTAGGAAACTGATTTCATGCATGTGTATGCTAAGAAAGG
CATTATTCATAAGCCATCTCCGTCCATTATTTAATCTGCACGATTCATAGTTCTCACCCAGGACAACTTGAGGAGAAGAC
ATGCATGTGTACCACTGCGTACAACAAAAGGCTTGATTAACTAAGCCATGGGAGAAGGGATTGATAGATGTAGCATATCC
AAGAAAGGACATAATTGATGCAATCTTGAGTCTTGACTAATGCAAATTCAGATGAACAACACGCTACTGCCCCGGAGTAA
AATACAGAGAGCCAAATGTAAG
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----SS----------------
------------------------------------------------S-------------------------------
----------------------------------------------------------------SS--S------S----
----S----------------------------S----------------------S-----------------SSSSSS
----S-----------------------------------------------------------------------S--S
-----------------S-----S-----------------S--------------------------------S-----
----------------------S-------------------------------S--------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
----------------------------------------S---S----------------S------------------
----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
-------------S-----------------S---S-------------SS---S---------S---------SS----
-------------------S--S----S--------------------S---------------------------S---
----------------------------------SS--------------------------------------------
------------------S-------S-------S----------------S----------------------------
---------------------S--S---------S--S--SS----S-SSS-------S----------------SS---
---S--S-----S----------------S------------------------SS------------------------
----------SS-------------------------------S---S--S--------SS---S---S-----------
----S------S------S-------------------------S-------------------S------------SS-
---S----------------S---S-S-----------------S-----S---S----------------SS-------
S---------S---S-----------------------------------S--------------SSSSSSSS-------
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------------------------------------------------------------------S------S------
-S----S---------------
>forward_76
--------------------------------------------------------GGGCAAAGGGGGAGAATGAA----
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>reverse_1189
--------------------------------------------------------------------------------
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--------------------------------------------------------------------GACTTGACGGTC
GGCGATAT------------------------------------------------------------------------
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----------------------
>forward_1110
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--------------------------------------------------ACGCCTCAGCTGTAGAAACC----------
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----------------------
>reverse_2321
--------------------------------------------------------------------------------
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TGGGCTGTAGACGACTAGCT------------------------------------------------------------
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>forward_1208
--------------------------------------------------------------------------------
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--------------------------------------------------------------------GACTTGACGGTC
GGCGATAT------------------------------------------------------------------------
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----------------------
>reverse_2826
--------------------------------------------------------------------------------
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-------------------------AAGTATGAGGGTGCCTGCAC-----------------------------------
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----------------------
