>input_sequence_44250
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---------------------------------------------------------ATGGTCCGTGGCGTCCATTACGG
CGGCGCGTGCGCCGTCCTCCTGGCCGCCGCCGTCGCGCTCGGCCTCGGCGCCCGCGGCGGCGCGGCGCAGCTGGACGACA
AGTTCTACGACCGGTCGTGCCCCGGCGTGCACAAGATCGTGCGGCGGGTCCTGAGGGAGGCGCACAAGGCCGACGTCCGC
ATCTACGCCAGCCTCACGCGCCTTCACTTTCACGACTGCTTCGTCCAGGTACGCCACCAGCTGCATG----CTCCATGCA
AACCTTTCGGCGTTCGTCTGGGTCGTGCCC----CGTCCAAGGTTTTGAGTTTTGACACGTACGTCTTGCCGCGCGCGCG
TGTTTTCAGGGGTGCGACGGGTCGATTCTGCTGGACAACAGCACGAGCATCGTGTCGGAGAAGTACGCCAAGCCGAACAA
CAACTCGGTGCGCGGGTTCACGGTGGTGGACGACGTCAAGGCGGCGCTCGAGAAGGCCTGCCCCGGCGTCGTCTCCTGCG
CCGACATCCTCACCATCGCCGCCGAGGTCTCCGTCGAACTGGTACGTGAATACATGTGCTAATCTGCCGGCGATGTACGT
GTGCATGCATGTGTTCTTTTCACTGCTCACATTCATCAGCTTCATCATTGAAAAAAGGCAA------CATCGTGGTTCAC
GGGCCAGGAGCTGCCAATGTGGCAATGTG------AAGGTACTGGCTAAAAGGTGCAGCAGGTGTAGCCTAGCTCATATA
TGCCCGAGCCTGTGGCAATAATTCAGAAACCGTCGGTGCAAAATAATTGAGCTGCATGCAAACGATGGGTTACGTAGACT
GGAGAGATCGACAGCATCATTGCCTGAAGTATGCTGCTAGTTGTAAAGCGGGCTGGCACGTGGTTCCATGTCAATCAAAA
CCCGTAAAAGACAGAGCCTAGCTAGTACGAGGTGGGGATACAGCAAAGTCCACGTCGCACCGGCTGTCGATCGATCACAC
CAGCCCTTCACTTCGTGCCTCTCTTTAATCCAACAAGCATGG-----TCACATGCACGACGAACGTTCCCCTCGTTGCTC
ACGAGCGTTTGTTCCCAT--GCGCATGCATGCAGTCCGGAGGCCCCCGGTGGCGCGTCCCGCTCGGCCGGCGCGATGGCA
CCACGGCCAACCTCACCGCCGCCAACAGCCTCCTCCCGAGCCCCCGCAACAACCTCACCATGCTCCAGCGCAAGTTCGCC
GCCGTCGGCCTCGGCGACATCGACCTCGTCGCCCTCTCAGGTACGTAGTCAAACACCCAGACTCATCATCTGCTCTCCAT
GGCGCCGTGATTGATTCTGACGATCTTC----------------------------TTGGGTCGTGGATTGCAGGCGCGC
ACACGTTCGGGCGCGCGCATTGCCAGTTCGTGACGGACCGGCTCTACAACTTCAGCAAGACGGGCATGCCGGACCCGACG
CTGGACGGTGGCTACCGGGCGCTGCTCGCCGGGAGCTGCCCGCGGCGGCACGGGAACAGGTCGGCGCTCAACGACCTCGA
CCCGACCACGCCCGACGCCTTCGACAAGAACTACTTCACCAACCTCCAGGGCAACCGCGGGTTCCTCCAGTCCGACCAGG
AGCTGCTCGCGGCGCCCGGCGCGACAACGGCGGCGATCGTCGGCCAGTTCGCGAGCGACGAGAAGGCTTTCTTCAGGAGC
TTTGCCGCGGCCATGATCAACATGGGGAATATCAAGCCGCTCACGGGTGGGCAGGGGGAGGTTCGGAGGAACTGCAGGAG
AGTCAATGGAAGCTAG----------------------------------------------------------------
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>chr4A_1_TraesCS4A01G076700
GAAAAGGAAGCAGCAATTGTAGAGCACCAAAGCCGGACGCTGGCAGCAGGATTGATCTGGTCTATCTTACGGCACAAGGG
AACAAGAAGGCTCCTTGTCTGTCTTACAAAAATGCTAGACTTACGGAAACCAGCCTACGGATGGTAGTTACGGGATGGGG
TGTCGTAATCTCATTGATGCTCAACCCGTGAATTAAGCTGTGGGACCCAAATCGTGGTAAATCCTAAGTCTCCACCTCAT
CTCCGTAACAACTTCCCGTGAAAACTGCCAGTAGCTGTAGCAAAGTTGGTCTATCTTAGGATGCATGGGGTGTAGGTTCG
CCGGAGAAATCGGGTAGTTTGTCGGCTTTAGAGGGATGGCCCCGGGCGACGGCAAGCCTGGTTGAGGGAGCTCGTGGGGA
GGACGGGGCGGCGAGACGATCGCGGGACCGCCGCCGGCCGCAGGCGGAGGAGGCAGGCGGTTCGGCCTGGGGTGGAGGGC
GGCCAAAGGAGGAATAT---------------------------------------------------------------
--------------------------------GTTCACATCGTGGGGAGGAAGATGATGAACAGTTTTCTTCGGGAGGGA
AGTAGAAGAAGGAGATCTCACCGTTACACTTTTTCATCCAACGGATGGGATCAATTTGACTGACCCAAAAACCAAATTCA
GTAGCCATTCCCTTTGCTGGCACCGTATCATTGGCCGGTTAAAA------------------------------------
------------TTCAGGCGCGTCGATAGTAAACCGGGCTTGCTGCATGCATGCATGCATGCAAAGTGCTTTTGTTGGC-
------------------------------CTCTGAAAACGACGCTCTGACGGACTCCCACGAACAGCAAATGATTGAGT
TGAGCCATCCTTCGGATCCAAGCAAAGGGCCTCTCCGTGTCCGCGAGCACCAGGCCTGCCTATAAAGCCCGTG--CTCTT
CAGCTCGTGGGACTCCTCAGACCGGCCGTGAACCACCT-AGTCGGCACTTGCACACAAAGTGAGCCCCTGCACTGCACCT
GCAAAGAGCAAACACGTACGACGTGCTCGCAGACAGAGTCTACCAAGGCAGGCAAAGATGGTCCGTGGCGTCCATTACGG
CGGCGCGTGCGCCGTCCTCCTGGCCGCCGCCGTCGCGCTCGGCCTCGGCGCCCGCGGCGGCGCGGCGCAGCTGGACGACA
AGTTCTACGACCGGTCGTGCCCCGGCGTGCACAAGATCGTGCGGCGGGTCCTGAGGGAGGCGCACAAGGCCGACGTCCGC
ATCTACGCCAGCCTCACGCGCCTTCACTTTCACGACTGCTTCGTCCAGGTACGCCACCAGCTGCATG----CTCCATGCA
AACCTTTCGGCGTTCGTCTGGGTCGTGCCC----CGTCCAAGGTTTTGAGTTTTGACACGTACGTCTTGCCGCGCGCGCG
TGTTTTCAGGGGTGCGACGGGTCGATTCTGCTGGACAACAGCACGAGCATCGTGTCGGAGAAGTACGCCAAGCCGAACAA
CAACTCGGTGCGCGGGTTCACGGTGGTGGACGACGTCAAGGCGGCGCTCGAGAAGGCCTGCCCCGGCGTCGTCTCCTGCG
CCGACATCCTCACCATCGCCGCCGAGGTCTCCGTCGAACTGGTACGTGAATACATGTGCTAATCTGCCGGCGATGTACGT
GTGCATGCATGTGTTCTTTTCACTGCTCACATTCATCAGCTTCATCATTGAAAAAAGGCAA------CATCGTGGTTCAC
GGGCCAGGAGCTGCCAATGTGGCAATGTG------AAGGTACTGGCTAAAAGGTGCAGCAGGTGTAGCCTAGCTCATATA
TGCCCGAGCCTGTGGCAATAATTCAGAAACCGTCGGTGCAAAATAATTGAGCTGCATGCAAACGATGGGTTACGTAGACT
GGAGAGATCGACAGCATCATTGCCTGAAGTATGCTGCTAGTTGTAAAGCGGGCTGGCACGTGGTTCCATGTCAATCAAAA
CCCGTAAAAGACAGAGCCTAGCTAGTACGAGGTGGGGATACAGCAAAGTCCACGTCGCACCGGCTGTCGATCGATCACAC
CAGCCCTTCACTTCGTGCCTCTCTTTAATCCAACAAGCATGG-----TCACATGCACGACGAACGTTCCCCTCGTTGCTC
ACGAGCGTTTGTTCCCAT--GCGCATGCATGCAGTCCGGAGGCCCCCGGTGGCGCGTCCCGCTCGGCCGGCGCGATGGCA
CCACGGCCAACCTCACCGCCGCCAACAGCCTCCTCCCGAGCCCCCGCAACAACCTCACCATGCTCCAGCGCAAGTTCGCC
GCCGTCGGCCTCGGCGACATCGACCTCGTCGCCCTCTCAGGTACGTAGTCAAACACCCAGACTCATCATCTGCTCTCCAT
GGCGCCGTGATTGATTCTGACGATCTTC----------------------------TTGGGTCGTGGATTGCAGGCGCGC
ACACGTTCGGGCGCGCGCATTGCCAGTTCGTGACGGACCGGCTCTACAACTTCAGCAAGACGGGCATGCCGGACCCGACG
CTGGACGGTGGCTACCGGGCGCTGCTCGCCGGGAGCTGCCCGCGGCGGCACGGGAACAGGTCGGCGCTCAACGACCTCGA
CCCGACCACGCCCGACGCCTTCGACAAGAACTACTTCACCAACCTCCAGGGCAACCGCGGGTTCCTCCAGTCCGACCAGG
AGCTGCTCGCGGCGCCCGGCGCGACAACGGCGGCGATCGTCGGCCAGTTCGCGAGCGACGAGAAGGCTTTCTTCAGGAGC
TTTGCCGCGGCCATGATCAACATGGGGAATATCAAGCCGCTCACGGGTGGGCAGGGGGAGGTTCGGAGGAACTGCAGGAG
AGTCAATGGAAGCTAGAGTGACCGAGTGAGGAAGCGTGGTTTAGCTTGTACCATGTGTACCATATCTGTGTCATGCATGC
AAGCATGTACGTACGTACTACATTGTTGAACCTCTTTAATTTATTCGAAAAGTCTATTTTAAACAATACTTCAATTTATG
AATTTGTATGTGATTTACGCCCGAGATACTAACATGAGTCATGTATTAACAAGTATTGCATATTTATAGCTAACTGCTAT
GCAAGCTAAGGGCATCTACGACGCCAACCCGTAAACCTCTAG-----------ACCGCGCTGTCTGTATCATGGAAGCCA
TCCAACGCCGACCTGTATCGGTCGGCGGAGTGGTCCGAACGTGATTTTTCTCGCAAACCTGAGACATAAGTGGGGAA---
--AATTTGCGGGAGTCCGGACCGATCCCAATCCCGTTTCT-GACCGTCCTAGCCCACCAAAAAC--ACCTCCA-----CC
TCC---CATGCGCGCATCCCGCCCAGTGCCAGGCTGCCAGCTGCCCGCATTCATGCTGCTATAGAGCGCGCCGCTCCGCA
TTGAAGGCAGCTCAGGGCGGACGCGACGTCTCACTGCCTCCGT-CATCGAAGCGGCTCGCCGGTCAA-GGGCGCCGCCCG
CTGCATGTCTGGCTGAACAGGCCTCCTCGCCGGATTCATACACCTCCATTAACCC-CGCGTGGAAGCCGAGAAACCTACT
CCGTCCACATGTCCGTTCATAAGC-GGGCCGACATTAAACGCAA-CATCGGCCGAGCTCCTCTCGCCCGCCCTCTATTTA
AACGAGGCCAGACGTCGGGCAAAAACCACACCCCTTCGCCGCTCCCCCCATCTCCTCCTTCAC--------CACTCTTCT
AATGGATTCCGAAGAGTAGTTCTCCAGCATAC-AAGTCGGCTGGG-TGGCCCGCCGAGCCGGCCGGATATGTCCGAGGCA
GCTCGCTGCTCCACCTCCCACGCCTAA-CCCGCCGGAGCAAGTTGGCCCTCCAAGCCGACGCGTGGTTCAGCAACTCGTC
GCTCCAGACCCACACGATG
>chr4D_443
GGCGTC--------------------------------------------------------------------------
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------------------------------------------------GGCGGCGGGCGGTTCGGCCTGGGGTGGAGGGC
GGCCAGATGAAGAACAGGTTTAGATCTGCCCCTGTACTTTGTTATGTTTCCGTAATATAAGGTTCAGGCCGGTGTAAGCC
CGCCGTTGACGCGTCAAAAAAAAAAAGAACAAGTTCAGATGGTGGGGAGGAAGATGATGAACAGTTTGCTTCAGGAGGGA
AGTAGAAGAAGGAGATCTGACCGTTAC--TTTTTCATCCAACGGTTGGGACCAATTTGACTGACCCAAAGAAC-------
-----------------------------------------AAA------------------------------------
------------ATCAGGCACGTGGATAGTAAACCGGGCATGC--------TGCATGCATGCAAAGTGCTTTTGTTGGCA
TATACGCATACCCCACCTGCATGAACTGGCCTCTGAAAACGACGCCCTGACGGACTACCATGAACAGCAAATGATTGA-T
TGAGCCATCCTTCGGATCCAAGCAAAGGGCCTCTCCGTGTCCGTGACCACCAGGCCTGGCTATAAAGCCCGTGTGCTCTT
CAGCTCGTGGGACTCCTCAGACCGGCCGTGAACCACCTAAGTCGGCACATGCACACACAGTGAGCCCCTGCAC-----CT
GCAAAGGGCAAACACGAACGACGTGCTCGCAGACAGAGTGTACCAAGGCAGGCAAAGATGGTTCGTGGCATCCATTACGG
CGGTGCGTGCGCCGTCCTCCTGGCCGTCGCCGTCGCGCTCGGCCTCGGCGCCCGCGGCGGCGCGGCCCAGCTGGACGACA
AGTTCTACGACGGGTCCTGCCCCGGCGTCCACAAGGTCGTGCGGCGGGTGCTGAGGGAGGCGCACAAGGCCGACGTCCGC
ATCTACGCCAGCCTCACGCGCCTCCACTTCCACGACTGCTTCGTCCAGGTAAGCAACCAGCTGCATGTGTGCTCCATGCA
AACCTTACGGCGTTCGCTTGGGTCGTACGTGCTTCGTCCAAGGTTTT------TGACACGTCCGTC-TTGCGCGCGCGTG
TGTTTTCAGGGGTGCGACGGGTCGATTCTGCTGGACAACAGCACGAGCATCGTGTCGGAGAAGTACGCCAAGCCGAACAA
CAACTCGGTGCGCGGGTTCACGGTGGTGGACGACGTCAAGGCGGCGCTCGAGAAGGCCTGCCCCGGCGTCGTCTCCTGCG
CCGACATCCTCACCATCGCCGCCAAGGTCTCCGTCGAACTGGTACGTGCATACATGTGCTAATCTGCCGGCGATGTACGT
GTGCATGCATGTGTTCTTTTCACTGCTCACATTCATCAGCTTCATCATTGAAAAATGGCAA------CATCGTGGTTCAC
GGACCAGGCGCTGCCAATGTGGCAATGCGGCTGGCAAGGTACTAGCTAAAAGGTGCAGTAGGTATAGCCTAGCTCATATA
TGCCAGAGCCCGCGGCAATAATTCAGAAACCGTCGGTGCAAAATAATTGAGCTGCATGCAAACGATGGCTTGCGTAGACT
GGAGAGATCGACAGCATC----------GTATGTTGCTAGTTGTAAAGCGGGCTGGCACGTGGTTCCATGTCAATCAAAA
ACCGTAAAAGACGGAACCTAGCTAGTACGAGGTGGGGATATGGCAAAGTCCACATCGCACCGGCTGTCGATCGATCACAC
CAG-CCTTCACTTCGTGCCTCTCTTTAATCCAACAAGCATGGCATGGTCACATGCACGACGAACGTCCCCATCCTTGCTC
ACGCGCGTTTGTTCCCAT--GCGCATGCATGCAGTCCGGAGGCCCCCGGTGGCGCGTCCAGCTCGGCCGCCGCGACGGCA
CCACGGCCAACCTCACCGCCGCCAACAGCCTCCTTCCCAGCCCCCGCAACAACCTCACCATGCTCCAGCGCAAGTTCGCC
GCCGTCGGCCTCGACGACACCGACCTCGTCGCCCTCTCAGGTACGTAG---AACACCCAAACTTCTCGATCATCAGTTCA
TCACCATCCTATCCATCGAACTCGACGTGCCCCCCGTGGTTGATCCAGGATCTTGTTTGGGTCGTGGATTGCAGGCGCGC
ACACGTTCGGGCGCGCGCAGTGCCAGTTCGTGACGGACCGGCTCTACAACTTCAGCAAGACGGGCATGCCAGACCCGACG
CTGGACGGGAGCTACCGGGCGCAGCTCGCCGGGAGCTGCCCGCGGCGGCACGGGAACAGGTCGGCACTCAACGACCTCGA
CACGACCACGCCCGACGCCTTCGACAAGAACTACTTCACCAACCTCCAGGGCAACCGCGGGTTCCTCCAGTCCGACCAGG
AGCTGCTCGCGGTGCCCGGCGCGACCACGGCGGCGATCGTCGGCCGGTTCGCGAGCGACGAGAAGGCTTTCTTCAGGAGC
TTTGCCGCGGCCATGATCAACATGGGGAATATCAAGCCGCTGACGGGCGGGCAGGGGGAGGTTCGGAGGAACTGCAGGAG
AGTCAATGGAAGCTAGAGTGACCGAGTGAGGAAGCGTGGTTTAGCTTGTACCA--TGTACAATTTCTGTGTCATGCATGC
AAGCATGTACGTAC----TACATTGTTGAACCTCTTTAATTTATTCAAAAAGTCTATTTGTGAACATACTTTAATTTATG
AATTTGTATGTGATTTACACCCGAGATACTAACATGGGTCATGTATTAACAAGTACTGCATATTTATAG-----------
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>chr4B_504
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--------------------------------------ATTGTGTGGAGGAAGATGATGACCAGTTTTCTTCATGAGGGA
AGTAGAAGAAGGTGATCTAACCGTTAC--TTTTTCATTCAACGGTTGGGATCAAATTGACTGACCCAAAAAAC-------
-----------------------------------------AAATTCAGTAGCCATTCCCTTTGTTGGCACCGTATTATT
GCCAGGTTAAAATTCAGGCGCGTCGATAGTAAACCGGGCTTGC--------TGCATGCATGCAAAGTGGTTTTGTTGGCA
AATAGGCATACCCCACCTGCATGAACTGGCCTCTGAAAACGACGCCTTGACGGACTCCAATGAACGGCAAATGATTGA-T
TGAGCCATCCTTCGGATCCAAGCAAAGGGCCTCTCCGTGTCCGTGAGCACCAGGCCTAGCTATAAAGCCCGTG--CTCTT
CAGCTCGTGGGACTCCTCAAACCCGCCGTGAACCACCT-AGTCGGCACATGCACACACAGTGAGCCCC------------
-------GCAAACACGTACGACGTGCTCGCCGACAGAGTTTACCAAGGCAGGCAAAGATGGTTCGTGGCGCCCATTACGG
TGGTGCGTGCGCCGTCCTCCTGGCCGCCGCCGTCGCGCTCGGCCTCGGCGTCCGCGGCGGCGCGGCGCAGCTGGACGACA
AGTTCTACGACGGGTCCTGCCCCGGCGTCCACAAGATCGTGCGGCGGGTGCTGAGGGAGGCGCACAAGGCCGACGCGCGC
ATCTACGCCAGCCTCACGCGCCTCCACTTCCACGATTGCTTCGTCCAAGTAAACCACCAGCTGCATGCATGCTCCATGCA
AACCTTTCGGCGTTGGTCTGGGC----CGTGCTTCGTCCAAGGTTTTGAGTTTTGACGCACCCATCTTTGCGCGCGCGTG
TGTTTTCAGGGGTGCGACGGGTCGATTCTGCTGGACAACAGCACGAGCATCGTGTCGGAGAAGTACGCCAAGCCGAACAA
CAACTCGGCGCGCGGGTTCACGGTGGTGGACGACGTCAAGGCGGCGCTCGAGAAGGCCTGCCCCGGCGTCGTCTCCTGCG
CCGACGTCCTCGCCATCGCCGCCAAGGTCTCCGTCGAACTGGTGCGTGCATACAA-------------------------
------------GTTCTTTTCACTGCTCACATTCATCAGCTCCATCGAATTAACTTGAGAAAAGCAGCATCGTTGTTCAC
GGGCCAGGCGCTGCCAATGTGGCAATGTGGCTGGCAAGGTACTAGCTAAAAGGTGCAGTAGGTATAGCCTAGCTCATATA
TGCCCGAGCCTGTGGCAATAATTCAGAAACCGTCGGTGCAAAATAATTGAGCTGCATGCAAACCATGGCTTACGTAGACT
GGAGAGATCGACAGCATCATTGCCTGAAGTATGTTGCTAGTTGTAAAGCGGGCTGGCACGTGGTTCCATATCAATCAAAA
CCCGTAAAAGACAGAGGCTAGCTAGTACGAGGTGGGGATATAGCGAAGTCTACATCGCACCGGCTGTGGATCGATCACAC
CAA-CCTTCACTTCGTGCCTCTCTTTAATCCAACAAGCATGG-----TCACATGCACGACGAACGTCCCACTCGTTGCTC
ACGCGCGTTTGTTCCCATGCGCGCATGCATGCAGTCCGGAGGCCCCCGGTGGCGCGTCCCGCTCGGCCGGCGCGACGGCA
CCACGGCCAACCTCACCGCCGCCAACAGCCTCCTCCCGAGCCCCCGCAACAACCTCACCATGCTCCAGCGCAAGTTCGCC
GCCGTCGGCCTCGACGACACCGACCTCGTCGCCCTCTCAGGTACGTAGTTAAA-ACCCAAACTTCTCGATCATCAGTTCA
TCACCATCCTATCCGTCGAACTCGACGTGCT--CCGTGGTTAATCCGGGATCTTGTTTGGATCGTGGATTGCAGGCGCGC
ACACGTTCGGGCGCGCACAGTGCCAGTTCGTGACGGATCGGCTCTACAACTTCAGCAAGACGGGCATGCCGGACCCGACG
CTGGACGTGGGCTACCGGGCGCAGCTCGCCGGGAGCTGCCCGCGGCGGCACGGGAACAGGTCGGCGCTCAACGACCTCGA
CCCGACCACGCCCGACGCCTTCGACAAGAACTACTTCACCAACCTCCAGGGCAACCGCGGGTTCCTCCAGTCCGACCAGG
AGCTGCTCGCGGCGCCCGGCGCGCCCACGGCGGCGATCGTCGGCCGGTTCGCGAGCGACGAGAAGGCTTTCTTCAGGAGC
TTTGCCGCGGCCATGATCAACATGGGGAACATCAAGCCGCTCACGGGTGCGCAGGGTGAGGTTCGGAGGAACTGCAGGAG
AGTCAATGGAAGCTAGAGTTACCGAGTGAGGAAGCGTGGCTTAGCTTGTACCA--TGTACA---TCTCTGTCATGCATGT
AAGCATGTACGTAC----TACATTGTTGAACATCTTTAGTTTATTCGAAAAGTCTATTGTAAACAATACTTCAGTTTATG
AATTTGTATGTGATTTACGCCCGAGATACTAACATGGGTCTTGTATTAACAAGTATTGCATATTTATAGCTAACTGCTAT
GCAAGCTAAGGGCATCTTCCACGCTTACCCATAAACTTCTCGCAACCGTCCGAACCGCGTTGTCCGTATCATGGAAGACA
TCCAATGCTGACCTGTATCGGTTCACGGGACGGTCCGGACGTGATTTCTCTCACAAACCGGAGACAAAAGTGGAGAA---
--AGTTTGCGGGAGTCCGGACCGACCACAAGCCCGCTTCT-GACCGTCCTGGCCCATCAAAAAC--CCCTCCA-----CC
TCC---CGCGCGCGCATCCCTTCTGGC--------GCCAGCTGCCCGCATTCATGCTGCTATAGAGCGAGCCGCTCTGCA
TTGAAGGCAGCTCAGGGCGGACGCGATGTCTCACTGCCTCCGC-CATCGAAGCGGCTCGCCGGTCGA-GTGCGCCGCCCG
CTGCACGTTCGGCTCAACACGCCTCCTCGTTGTATTCATACGCCTCCATTAACCC-CGCGTGGAAGCCGAGAAACATACT
CCGTCCACACGTCTGTT---------------------------------------------------------------
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>chr1D_2974
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-----CTAAGGGCATCTCCAATGCCAATCCTCAAACCTCGCAACCGTT----------------TGAATCACGGAAGTCA
TTCAACACCGACTTGTATTGGTCCGTGGAGCAGTTCGGAAGCGATTTCTCCCGCAAACCGGAGACAAAAGTCGGGGA---
--GATTCGCGGGAGTCCAGACCGATCCGAAGCTCGCTTCT-GACCGCCCTGGCCCACCAAAAAT--CCCCCCC-----TC
TC-----GCTCCTGCATCCTGTCCGGC--------GCCTGTTGCCCGCATTCATGCCGCTGTAGAGTGTGCCGCTCC-CA
TTCAAAGCGGCTCAGGATGG-CACGACCTCTCACTGCCTTCGC-CATTGAAGCGGATCGCTGGCCGT-GGGCGCCGTCCG
CTGCACGCCCGGCTGAACACGCCTTCTCTCCGCATTCATACGCCTCCATTAAACC-CGCGTGGAAGCCGAGAAACCTACT
CCGGCCACACGCCCGTTCATGAGC-GGGCCGGCATTAAACGCAA-CGCCCGCCGAGCTCCTCCCGCCTGCCCTCTATTTA
AACGAGGCCAGACGCCGGGCAAGAATCGCACCTCTCCGCCGCTCCCCC-GTCTCCTCCTTCAC--------CACTCTCTT
GATGGCTTCCGAAGAGCAGTTCTCCAGCATAC-AAGCCGGCT-GG-TGGCCCGCCGAGCCGGCCGGATACGAGCGAGGCA
GCTCGCTGCTCCACCTCCTGCGCCTAA-CTCGACGGAACAAGTTGTCGCCCCAAGCCGGCGCGTGGTTCAGCAACTCGCC
GCTCTAGGCCCAC------
>chr5B_3010
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-----------------------------------------G-----------ACCGCGTTGTCCGGACCGCGGAAGCCA
TCCAACGCCGATCTGTATCGGTCCGCGGTGTGGTCCAGACATGATCTTTCCCGCAAACCGGAGACAAAAGTAGGGGA---
--GGTTTGCGGGAGTCCGGACCACTCCCAAGCCCGCTTCT-CACCGTCTTGGCCCACCAAAAAA--ATCCTCCCCCTCCC
GCA---CGCGC-----TCTCGCCCGGC--------GCCAGCTGCCCGTATTCATGCTGCTGTAGAGCGCACCACTCCGCA
TTGAAGACGGCTCTGGGCGGACGCGACCTCTCACTGCCTCCGCCGA-TGAACCGGCGCGCTGGCCGA-GGGCGCCGCCCG
CTACACAACCGGCTAAACATGCCTCGTCGCCGCATTCATACACCTCCATTAACCC-CGCGTGGAAGCCAAGAAACCTACT
CCGACCACAC---CGTTCAGGAGC-AGACCAGCATTAAATGCAA-CATCGGCCAAACTCCTACCGTCTGCCCTCTATTTA
AACGAGGGCAGACGCCGAGCAAGAAT-ACACGCCTCCGCCGCTCCTCCAATCTCCTCATTCAC--------CACTCTTCT
AATGGCTTTCGAAGAGCAGTCCTCCAACATAC-AAGCCAGCT-GGGTGGCCCACCGAGCCCATCGGATATGAGTGAGGTA
GCTCGCCGCTCCACCTCCCGCGCCTCA-CCCGATGGAGCAAGTTGCCG-CCCAAGCCGTCTCGTGGTACAACAAATTTCG
CCTCCAGGCCCACTCGATG
>chr2A_3028
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----------------------------------------------------------------------ATGGAAGCCA
TCCAACGCCGACCTGTATCGGTCCGCGGAGCGGTCCGGATGCGATTTTTTCCGCAAACCGGAAACAAAAGTGGGGGA---
--GGTTTGCGGGAGTCCGAACAGCTCTCAAGCCCGCTTTT-GACCGCCCTGGCCCATAAAAAAA--ACCTCACAT-----
-------GCGC-----TCCCGTCCGGC--------GCCAGCTGCCCGCATTCATGCCGCTATAAAGCGCACCGCTCCGCG
TTGAAGACGGATCAGGGCGGACGTGGCCTCTCACTGCCTCTGC-CATTGAAGCGATGCGCCGACCGA-GGACGCTGCTCG
CTGCATGCCCGACTGAACACGCCT-CTTGCCGCATTCATACGCCCCCATTAACCC-CGCGTGAAAGCCTAGAAACCTACT
CCGGCCACACGTCCGTTCATGAGC-GGGTCGGCATTAAACGCAA-CGCCAGCCAAGCTCCTACCATTCGCCCTCTATTTA
AACGAGGGCAGGCA-CTGGCAAGAACCTTACCCCTTCTCCACTCCCCCAATCTCCTCCTCCAC--------CACTCTTCC
GATGGCTTCCGAAGAGCATTTCTCCGACATACAAAGCCGGCTGGG-TGGCCCGCCGAGCCGGCCGGATACAAGCGAGGTA
GCTCGCTGCTCCG-CTCACGCGCCTCA-TTCGACGGAGCAAGTTGCCGCCCCAAGCCACCACGTGGTTCAGCAACTCGCC
ACTCTAGGCCCACTCGATG
>chr2A_3028
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----------------------------------------------------------------------ATGGAAGCCA
TCCAACGCCGACCTGTATCGGTCCGCGGAGCGGTCCGGATGCGATTTTTTCCGCAAACCGGAAACAAAAGTGGGGGA---
--GGTTTGCGGGAGTCCGAACAGCTCTCAAGCCCGCTTCT-GACCGCCCTGGCCCATAAAAAAA--ACCTCACAT-----
-------GCGC-----TCCCGTCCGGC--------GCCAGCTGTCCGCATTCATGCCGCTATAAAGCGCACCACTCTGCG
TTGAAGACGGCTCAGGGCGGACGTGGCCTCTCACTGCCTCTGC-CATTGAAGCGACGCGCCGACCGA-GGACGCTGCTCG
CTGCATGCCCGACTGAACACGCCT-CTTGCCGCATTCATACGCCCCCATTAACCC-CGCATGAAAGCCGAGAAACCTACT
CCGGCCACACGTCCGTTCATGAGC-GGGTCGGCATTAAACGCAA-CGCCAGCCAAGCTCCTACCATTCGCCCTCTATTTA
AACGAGGGCAGGCA-CTGGCAAGAACCTTACCCCTTCGCCACTCCCCCAATCTCCTCCTCCAC--------CACTCTTCC
GATGGCTTCCAAAGAGCAGTTCTCCGACATAGAAAGCCGGCTGGG-TGGCCCGCCGAGCCGGCCGGATACAAGCGAGGTA
GCTCACTGCTCCG-CTCACGCGCCTCA-TTCGACGGAGCAAGTTGCCGCCCCAAGCCACCACGTGGTTCAGCAACTCGCC
ACTCTAGGCCCACTCGATG
>chr3D_3030
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------------------------------------------------------------------------GGAAGCCA
TCCAACGCTAATCTGTATCAATCCGTGGGACAGTCTGGACGCGATTTTTCCAGAAAACCGAAGACAAAAGTGGGGGA---
--AATTTGCGGGTGTGTGGACCGCTCCCAAGCCCGCTTCT-GGCCGTCCTAGCCCATCAAAAAT--CCGCCCC-----CT
CCCGCGCGTGC-----TCCCGATCGGC--------GCCAGCTGCCCGCATTCATGCTGATGTGGAGCGGGCCGCTCCGCA
TTGAAGACGGCTACGGGAGGATGCGACCTCGCACTGCTTCCGCCCATTGAAGTGGCGCACCGGCCGA-GGGCGCCGTCCG
CTGCACGCCCGGCTGAACACGCCTCTTCGCCGCATTCATACTCCTCCATTAACTC-CGCGTGGAAGCCGAGAAACCTACT
CCGGTCACACTTCCGTTCATGAAC-GGGCCGACATTCAACGCAA-CACCGGCCGAACTCCTATCGTCCACCCTCTATTTA
AATGAGGACAGACGCGGGCCAAGAACCATATCCCTTCGCCGTTCCCCCAATCTCTTCCTTCAC--------CAATCTTCC
GATGGCTTTCGAAGAGCAGTTCTCCGGCATAC-AAGCCGGCTGGG-TGGCCCGCCGAGCCCGCCGGATACGAGCGAGGCA
GCTCCCTGCTCCACCTCCCGCGCCTCA-CCCGACAAAGCAAGTTGCTGCCCCAAGCC-GCGCATGCTTCAGCAACTCGCT
GCTCCAGGCCCACTCGATG
>chr7D_3030
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------------------------------------------------------------------------GGAAACTA
TCTAGCGACGACCTGTATCGGTCTGCGGGGCAGT-TGGATGCGATTTCTCCCGCAAAACGGGGACAAAAGTGGGAGA---
--GGTTTGCAGGAGTCTGGAACTATCCCAAGCCCGCTTCT-AACCGTCCTGGCCCACTAAAAAT--CCCTCCC-----GC
TCC---TGCGCCCGCATCCCACCCGAC--------GCTAGCTGCCCACATTCATGCTACTGTAGAGCGCGCTGCTCCGCA
TTGAAGGCGGCTCAGGGCGAACGAGACCTCTCACCGCCTTTAC-CATTGAAGCGGCTCGCCGGCCGA-GGGCGCCGCCCG
CTGCACGCCC-----GACACGCCTCCTCGCCGCATTCATACGCCCCCATTAACCC-CGCGTTGAAGCCGAGAAACCTACT
CCGGCCACACGTCCGCTCATGAGC-GGGCCGACATTAAACGCAAACGCCGGCCGATCTCCTCCCGTCCGTCCTCTATTTA
AACGAGGTCAGACGCGGGGCAAGAATCTCACTCCTCCGCCACT-CCCCCATCTCCTCCTTCAC--------CACTCTTCT
GATGGCTTCTGAAGTGTAGTTCTCCGGCATAC-AAGGCGGCTGGG-TGGTCCGCTGAGCCCGCCGGATACGAGCGAGGCA
GCTCGCTGCTCCACCACCCGCGCCTGG-CCCGACGGAGCAAGTTGCAGCCCCAAGCCAGCGCGTGGTTCAGCAACTCACC
GCTCCAGGCCCACTCGATG
>chr7B_3030
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------------------------------------------------------------------------GGAAGCTA
TCTAGCGACGACCTGCATCGGTCCGGAGCGGTTCAAATGC---ATTTCTCCCGCATC---GGGACAAAAGTGGAGGA---
--GGTTTGCAGGAGTCTGGACCGATCCCAAGCCCGCT-CT-AACTGCCCTGGCCCA-CAAAACC--CCCTCCT-----GC
TCC---TACGCGCGCATCCCACCCAAC--------GCTAGTTGCCTACATTCATGCCGTTGTAGAGCGTGCCGCTCCGCA
TTGAAGGCGGCTCAGGGCGGACGAGACATCTCACCGCCTTTGT-CATTGAAGCGGCTCGCCGGCCGA-GGGCGCCGCCCG
CTGCACGCCCGGCTGAACACGCCTCCTTGCCGCATTCGTACGCCCCCATTAACCC-CACGTTGAAGCCGAGAAACCTACC
CCGGCCATACGTCC-CTCATGAGGGGGCCCGACATTAAACGCAA-CGCCGGCCGATCTCCTCCCGTTCGTCCTTTATTTA
AACGAGGCCAGATGTCGGGCAAGAATCGCACCCCGCCGTCGCT-CCCCCATCTCCTCCTTCAC--------CACTCTTCT
GATGGCTTCTGAAGAGTAGTTCTCCGGCATAC-ACGGCGGCTGGG-TGGTCCGCCAAGCCCGTCGGATACGAGCGAGGCA
GCTCGCTGCTCCACCACCCGCGCCTGG-CCCGACGGAGCAAGTTGCAGCCCCAAGCCAGCGCGTGGTTCAGCAACTCGTC
ACTCAAGGCCCACTCGATG
>chr6B_3030
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------------------------------------------------------------------------GGAAGTCG
TCCAACGTCGACCTGTGTCGGTCTCCGGGGTGGTCTGGACGTGATTTCTCCGGCAAACCGAAGACAAAACTGGAAAA---
--GGTTTGCTGGAGTCCGGACCGATCCCAAGCCCGTTTCTTGACCGCTCTGGCCCACCACCAAC--CCCACTC-----CC
TCCACTCGCGCGCGCACGCCGTCTGGC--------GCCAGCAGCCTGCATTCATGCCGCTGTAGAGCGCGCCGCTCCGCA
TTGAAGGCGGCTTAGGGCGGACACGACCTCTCACTACATGCGC-CATTGAAGCGCCGCACCGACCGA-GGGCATCGCCTG
TTGCACACCCGGCTGGACACGCCTCCTCGCCACATTCATACGCCTCCATTAAACTTCACGTGGAATCCGAGAAACCTACT
CCGGCCACACATTTGTTCATGAGC-GGGCCGGCATTACATGCAA-TGCCGGCCAAGCACCTCCCGTTCGCCCTC-----A
AACGATGCCAGACGTCGGGCAAGAATCGCACCCCTCCGCCGCT-CCCCCATCTCCTCCTTCAC--------CACTCTTCT
GATGCCCTCCGAAGACCAGTTCTCTAGCATAC-AAGCCGGCAGGG-TTGCCCGCCAAGCTCACCAGATACGAGCGAGGCA
GCTCACAGCTCCACCTCCCTCGTCTAG-CCCGACGAAGCCAGTTGCCG-CCCAAGCCGGCGCGTGGTACAACAACTCGCC
GCTCCAG------------
>chr1D_3031
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-------------------------------------------------------------------------GAAGCCA
TCCAACGCGGGCCTGTATCGGTCCGCGGAGTGGTCCGGACGCGGTTTCTCCCGCAAACCGGAGACAAAAGTGGGGGA---
--GGTTTGCGGGAGTCCAGACTGATCCCACGCCCGCTTTT-GACCGCCCTGGCCCACTAAAAAC--CTCTCCCACGTCCC
GCG---CGCGCATCCCCCCCCCCCGGC--------GTCATCTG-CCGCATTCATGCCGCTGTAGAGCGCGCCGCTCCGCA
TTGAAGGCAGCTCAAGGCGGACGCGACCTCTCACTTCCTCCAC-CATTGAAGCGGCGG----------------------
----ACACCCGGCTGAACACGCCTCCTCGCCGCATTCATACGCCTCCATTAACCC-TGCGTGGAAGCTGAGAAACCTACT
CTAACCACACGTCCGCTAATGAGC-GGGCCGACATTAAACGCAA-CGCCGACCGAGCTCCTCCAGTCTGCCTTCTATTTA
AACGAGGCCAGACGCCGGACAAGAACCACACCCTTCCGCCGCTCCCCCCATCTCCTCCTT-AC--------CATTCTTTC
AATGGCTTCCGAAGAGCAGTTCTCCAACATAC-AAGCCGGCTGGG-TGGCCCGCCGAGACGGCTGGATACGAGCGAGGCA
GCTCCCTGCTCCACCTCTCGCGCCTAACCCCGACGGAGCAAGTTGTCGCCCCAAGCCGTCGCGTGGTTCAACAACTCGCC
GCTCCAGGCCCAC------
>chr4D_3041
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---AACACAGAACTGTATCGGTCCACGGGACGGTCCGGACGT-GTTTCTCCCGCAAATTGGAGACAAAAGTGGAGCGGGA
GGGGGTTGCAGGAGTCCAGACCGATCCCAAACCCGTTTCT-GACTGCCCTGGCCTACCAAAAAC--TCCCCCT-----CC
AGTGCAAACTTTT------CGTCCGGC--------GTCAGCTGCCCGCATTCATGCCACTGTAGAGCGCGCCGCTCCGCA
TTGAAGGCGGCTCAGGGCGGACGCGACCTCTCATTGCCTCCGC-CATAGAAACGGCGCGCCGGCCGAGGGGCGTCGCCCG
CTGCATGCCTGGCTGAACACGCCTCCTCGCCGCATTCATACGCCTCCATTAAACC-CGTGTGGAAGCTAAGAACCCTATT
TCGTCCACACGTCTGTTCATGAGC-GGGCCGACATTAAACACAA-CGCCGGGCAAGCTCCTCCTGTCCGCGCTCTATTTA
AACGAGGCCAGACGCCGGGCAAGAATCGCACCCCTCCGCCGCTCTCCC-ATCTCCTCCTTCACCATTTTCTCACTCTTCC
GATGGCTTCCGAAGAGCAGTTCTCCGGCATAC-AAGTCGGCTGGG-TGGCCCGCCGAGCCCGCCGGATACTAACGAGCCA
GCTCGCTGCTCCACCTCCCTCTCCTAG-CCCGACGGAGCCAGTTGCCGCCCCAAGCCGGCGCGTGGTTTAGCAACTCACC
GCTCCAGACCAACTCGATG
>chr1A_3050
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------------CTGTATCGGCCCGCGGCACGGTTCGGACGCGATTTCTCCCGCAAACCAGAGAAAAAAGTGGGGGA---
--GATTTGCAGGAGTCCGGATTGATCCCAAGCTCGCTTTT-GGTTGCCTTGGCCCACCAAA-----------CCCCTCCC
TCC---CGCGTGCACATCCCGTCCCGC--------GCCAACTGTCCACATTCATGCAGTTGTAGAGCGTGCCGCTCCGCA
TTGGAGGCGGCTCAGGACGGACGCGACCTCTCACTGCCTCCGC-CATTGAAGCGGCTAGCCGGCCAA-GGGCGCCACCCG
CTGCACGCCCAAGTGAACACGCCTCCTCGCCGCTTGCATACGTCTCCATTAACCC-CAAGTGGAAGCTGAGAAACCTACT
CCGTCCACACGTTTGTTCATGAGC-GTGCCGACATTAAACGCAA-CACCGACCAAGCTTCTCCCATCCACCTTCTATTTA
AACGAGGCTAGACGTCGGGCAAGAACCACACCCCTTCGCCACTCCCCCCATCTCCTCCTTCAC--------CACTCTTCT
GATGGCTTCCGAAGAGCAGTTCTCCGGTATAC-AAGCCAGCTGGG-TGGACCGCCGAG---GCCGGATATGAGCGAGGCA
GCTCGCTGCTCCACCTC---------------------------------------------------------------
-------------------
>chr3A_3118
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-----TTGCGGGAGTCCGGACCGTTCCCAAGCCCGCTTCT-GACCGTTCTAGCACAGCAAAAAATGCCTCCTC-----CT
CCAGCGCGTGC-----TCCCCTCCGGC--------GCCAGCTGTCCGCATTCATGCCGCTGTAGAGCGCGCCGCTCCGCA
TTAAAGACGGCTCAGGGCAGACATGACCTCGCACTGCCTCTGC-CATTGAAGCGGTGCACCGACTG-GGGGCGCCGTCCG
CTGCATGCCTGGCTGAACACGCATCCTCGCCGCATTCATACACCTTCATTAACCC-CGCGTGGAAGCCGAGAAACCTACT
CCGGCCACACGTCTGTTCATGAGC-GGGCCGGCTTTAACTGCAA-TGTAGGCCAAACTCCTACCGTCTGCCCTCGATTTA
AACGAGGGCAGACGTGGGGCAAGAACCACACCCTTTCGCCGCT-CCCCAATCTCCTCCTTCAC--------CACTCTTCT
GATGGCATCCGAAGAGCAGTTCTCCGGTATAT-AAGCCGACTGGG-TGGCCCACCGAGCCCGCTAGATACGAGCAAGGCA
GCTCGCTGCTCCACCTTCCGCACCTCACCCGGCGGAG-------------------------------------------
-------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---S-------------------------
-----S-S--S---S-S---------------------------------------------------------------
-------------------------------------S--S-------------------------------S-------
------------------S--------SS---------------S--------------------------S-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
-------------------------------------------SSSSSSSS-----------------------------
---------------------------------------------S--------------S-----------------S-
-------------------------------------------S--------------S---------------------
------------------------------------------------S--------S---------------SSSSS--
------S--------------------------------S----------------------S-----------------
---S----------------------------------------------------------------------------
-----------S----S-----------S--------------------S------------------------------
-----------------------S-----S---------------------S----------------------------
--------------------------S-SS-------------------------------S------SS--------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S------------------------S-------------------------------
-------------------------------------------------------S------------------------
--------S----------------------------------S--------------S----S----------------
--------------------------------------------------------------------S-----------
---------------------------------S----------------------------------------------
----------------------------------------S------------S--------------------------
---S--------------------------------------------------------------S-------------
---S-----------------------------------------------------------------------S----
--------------------------------------------------------------------------------
-------------S-----S-----------------------------S---------S---SS--SSSSSSSSSSSSS
SSSS-SSSSSS-SSS--SS--SSSSSSS----------------------------------------------------
-------------------S------------------------------------------------------------
--------S-------------S---------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S-------------------S----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------SS-----S--S----------------
--------------SSSS--------------------------------------------------------------
------------------------------------S-------------------------------------------
-----------------S-S----------S---------S------------------S--------------------
-----------------------S-------------S---------------------S------S-------------
------------------------------S-------------------------------------------------
--------------------------SSSSSSSSS---------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------S-----------------------------------------------
---------S----------S-----------------------------------------------------------
----------------------S---------------------------------------------------------
-----S-----------------------------------------------------------------SS-------
-------------------S-------------------------S-S-S--------S---------------------
-------------S-----
>forward_329
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---------------------------------------------------------------------GTGTAGGTTCG
CCGGAGAAA-----------------------------------------------------------------------
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>reverse_2482
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-GCGCCGTGATTGATTCTGAC-----------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>forward_332
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------------------------------------------------------------------------TAGGTTCG
CCGGAGAAATCG--------------------------------------------------------------------
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>reverse_2506
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-------------------------TTCTTGGGTCGTGGATTGCA-----------------------------------
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>forward_2484
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----------------------------------------------------------------ATCATCTGCTCTCCAT
GGCG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3391
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------------------------------TCCCGTTTCTGACCGTCCTA------------------------------
--------------------------------------------------------------------------------
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-------------------
