>input_sequence_44210
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-------------------------------------------------------TTTTAAAAGAGGTTGTGTGCATCAT
CCAATCAACCCTCTCTCTCTCTCCTCCTAGCTAGCTAGCTTGTTCATCTTGTTCTTCCAAGTCTTCCTGCTAGGTCTCTC
TTCGGGGATATGAGTGGGAACAACTTTGGGGACAGCATGGGGTGGGGCAGATCGTCCGGCTCCAGGAAGGGCAAGAGAGG
CGGCAGCAGCAGCGGCGGCAGTGGCGCCGACAAGCCGAAGCAGCCGCAGCGGGGGCTCGGCGTGGCGCAGCTCGAGAAGA
TTAGGTTACAGAGCGAAATGGCTGAGTACTTCCATCCTCTTGGTGGTCAGCCACCCAGCTTGATCCACAGAACGGCCAGC
CTCAATTTGGTGAGTGAAGACACATCTTGCAAAGCTGAAGTGAACATATGTGTATATGCGTATTTTGTGTGTATGGATTT
GCTTGCGATTTTCGTAAGATTGGGCGTTTCTGATTCCTTGCGTCTTTGGAATGGATCTATCGAGCAGGAGGATACGCGGG
CGTCAACGTCCTCGCTCTCATCGTCCCCATCGTCCCCCTTCCATGCTACCGCCGTCTCGTCGGCCTTCCCGGTCCATCCG
AATTTTGGGGTAGGCTGTCATCTTTTCCCCTTCATGTTGTTTTAGGAACAAATTAATTGGTATACGAAAAACTGGATATA
GGT-------------ATATATATGTGGAAGC-AGTAGAAACAACTGTTGATCTTCTTTTTTTTGCGAGTGAAAAAAAAA
CTATGG----------AAATGAGATTTTGAGCTTCTTT-GTGATAAAC-----AGTGAAGAAACTAGTTGTCTTTGAATT
GTTTCAAAG-AAAAACGAGCAATCATTCTTGAA-----------------------------------------------
-------------------------------TTAATTTGAGATTTGTTTCCAGTTAGGTGTGCTAGCTCTACGCGTTCTC
TTGCTTCTTCCCTCGTTATTAATTTG---------TACTTATTTTCTCCTTGATCATAGATATCGTCATTATCGCGTTAT
CTAAGCAGTTATTCTGACAAGGATCTCGTCCGTACTGTTTTCATGATACGAAAAATCTACATGAGATCAAACTTTCTCTG
ACATCATCTT-------ATTATCATCAGCTTTCGTGCTGTATGTATCTTGTTTGTTCTTCCATATGCACGTGAGCTATAT
ATCAAGATCTCTTACGATATCTCCGGCCTTATCATGTACAGATGGCATATGGGGAGAGAGGAGACGCTCGATATGGTGAA
TTCCAGACTCCCATCGTAAGGTACTGCACACAACTTCATTAATCCTTGAATTTACCCGGAATAACAAGCTACAACTCCAT
TACTCCTTGAATTTACCCGGAATAACAAGCTATA-----------------------------------------GCTCC
AACTAACAACTGCAACATCTGCATATGCCTGCCAACCAGATCACCAAGCAGCAGCACTATCTACGGGCCACCACATTACG
CACATCCTGGTGTCACATTGCCACTGTTTGCACCAGAGGTATGTCTCTCTACATGCAGATCATGGAGACAGATGGACGAG
TGTTGAATGGCTGATCAAAAAGCATTATACACTGCGAAGTTATCTTTTTAACTCATGTGGTTCTTAACCATTTTTATTTT
CTGTAGGAATCTACCCGTCTGAGAAGGCACCATGACCGGAGCCGGTCAGCTGATTCGACGAGTATGAATTCCGATGATCC
AGAAGACGTGGATCTCGAGCTCAAGCTATGATCCTCAAGTG---TTCTTCT---CCTTACGTTCATCTCTCCTCTGATCT
TATACGACAGTTCCTTTCTTTAGCCTGCATGGGGTTTTCCTTCCTTGTGGTGCA--------------------------
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>chr3D_1_TraesCS3D01G269300
TGAAAAGTCGTCGTGCTAAAGCCACATATAAGACCAGCGCAACAGAACAGCAATCGGCGCCGATGAAGAGAAGCTTAGAT
CGTAAGGATCAAACCTGTAGTTACACGAACACAGATGAACGAAGACAG----------GATCCACCGAAGACAAACGCCA
ATTGAATCCTGTGAGATCCATTGGAGACAAACCTCCACACGCCCTCCGAAGATGCTAGAATCACCACCGG-GACGGGACT
AAGAGGGAAGAA-TTTATTCCATCTTCAAAGAGCTGTCGTCGCCTCTACTAATTTTGTTGTTGATTCCAAATGATATCGA
GAGAACGAAAAGTCAACAAAAAACTGCCTCTACTTGTGTTCACGCCAGAACACGTACGTAGCAAAATTTATGAAGAACCA
ATGCTTTATTTATCGGAAATCATAAAATTT-TATGTTAGATTTTTAAGCACGACAAATCTGATGTTTTGGATGACAAATT
ATGTTGTCGCGTGCATAGCAATTTCCTTCAGCAAAGGTGGACAATCCCGACAAAAAACGAGTATGTCAAAAATTTACCAT
GCTTGCTAAAGAAAATTTTCATGCTTGCGAAAACATAATTTACCATCCAAAACATCAGATTTTCCATGCTTAAAAATCTG
ACATTTGTAGGGAATTATTTATTAGCAGATTTCCTGCTATATTTGTTGTGGTGGTATTGAATAGTGACTTAAAGAAGAGT
ATCTAAGTGCAAATTACTCTCCTAAGTAACCAAGGAGACAATTGATGGCAAAGATCCTAGGAGATCAGCACCTAACTAAT
TAAAATGCATTGCCCGCTTTTAAAATTCCTGGATTTTTATTTCAAGCGATAGGGTTTTGGGGCACATGGTGTTCACTATA
TTCAAAAGATGGCCATGCCACTAGAATACTAGATGAAATTTTAAAATTTGAGGCAAG-AAAAGCTTGGGAGAGCAAGTCT
CCCTTTTAATAAAGAGTAGGGATATATTGGCCTGCAA-GAGATCTCTCCCTTTCATTTTAAAAGAGGTTGTGTGCATCAT
CCAATCAACCCTCTCTCTCTCTCCTCCTAGCTAGCTAGCTTGTTCATCTTGTTCTTCCAAGTCTTCCTGCTAGGTCTCTC
TTCGGGGATATGAGTGGGAACAACTTTGGGGACAGCATGGGGTGGGGCAGATCGTCCGGCTCCAGGAAGGGCAAGAGAGG
CGGCAGCAGCAGCGGCGGCAGTGGCGCCGACAAGCCGAAGCAGCCGCAGCGGGGGCTCGGCGTGGCGCAGCTCGAGAAGA
TTAGGTTACAGAGCGAAATGGCTGAGTACTTCCATCCTCTTGGTGGTCAGCCACCCAGCTTGATCCACAGAACGGCCAGC
CTCAATTTGGTGAGTGAAGACACATCTTGCAAAGCTGAAGTGAACATATGTGTATATGCGTATTTTGTGTGTATGGATTT
GCTTGCGATTTTCGTAAGATTGGGCGTTTCTGATTCCTTGCGTCTTTGGAATGGATCTATCGAGCAGGAGGATACGCGGG
CGTCAACGTCCTCGCTCTCATCGTCCCCATCGTCCCCCTTCCATGCTACCGCCGTCTCGTCGGCCTTCCCGGTCCATCCG
AATTTTGGGGTAGGCTGTCATCTTTTCCCCTTCATGTTGTTTTAGGAACAAATTAATTGGTATACGAAAAACTGGATATA
GGT-------------ATATATATGTGGAAGC-AGTAGAAACAACTGTTGATCTTCTTTTTTTTGCGAGTGAAAAAAAAA
CTATGG----------AAATGAGATTTTGAGCTTCTTT-GTGATAAAC-----AGTGAAGAAACTAGTTGTCTTTGAATT
GTTTCAAAG-AAAAACGAGCAATCATTCTTGAA-----------------------------------------------
-------------------------------TTAATTTGAGATTTGTTTCCAGTTAGGTGTGCTAGCTCTACGCGTTCTC
TTGCTTCTTCCCTCGTTATTAATTTG---------TACTTATTTTCTCCTTGATCATAGATATCGTCATTATCGCGTTAT
CTAAGCAGTTATTCTGACAAGGATCTCGTCCGTACTGTTTTCATGATACGAAAAATCTACATGAGATCAAACTTTCTCTG
ACATCATCTT-------ATTATCATCAGCTTTCGTGCTGTATGTATCTTGTTTGTTCTTCCATATGCACGTGAGCTATAT
ATCAAGATCTCTTACGATATCTCCGGCCTTATCATGTACAGATGGCATATGGGGAGAGAGGAGACGCTCGATATGGTGAA
TTCCAGACTCCCATCGTAAGGTACTGCACACAACTTCATTAATCCTTGAATTTACCCGGAATAACAAGCTACAACTCCAT
TACTCCTTGAATTTACCCGGAATAACAAGCTATA-----------------------------------------GCTCC
AACTAACAACTGCAACATCTGCATATGCCTGCCAACCAGATCACCAAGCAGCAGCACTATCTACGGGCCACCACATTACG
CACATCCTGGTGTCACATTGCCACTGTTTGCACCAGAGGTATGTCTCTCTACATGCAGATCATGGAGACAGATGGACGAG
TGTTGAATGGCTGATCAAAAAGCATTATACACTGCGAAGTTATCTTTTTAACTCATGTGGTTCTTAACCATTTTTATTTT
CTGTAGGAATCTACCCGTCTGAGAAGGCACCATGACCGGAGCCGGTCAGCTGATTCGACGAGTATGAATTCCGATGATCC
AGAAGACGTGGATCTCGAGCTCAAGCTATGATCCTCAAGTG---TTCTTCT---CCTTACGTTCATCTCTCCTCTGATCT
TATACGACAGTTCCTTTCTTTAGCCTGCATGGGGTTTTCCTTCCTTGTGGTGCAATAAGTTTCTGAATTGGTGCCACTAG
CTAGAACCAAGGATTTGCCAGCTTGTGTAATGCGCAAAAGATAAAAAGAGAGGAATAGCAATTCACATTATTTTTTACGT
CAAGACATGATGTTGTATGGGTATGGCCATATGGATGCAAGTCGTTTTGATTGTACTACTATACAAACATAGATGTGTTG
ACTCTTGCCCTGAAACTGCATGCTAGCATACACTGACACAGTTTCGTACATGATTGCTATTAATTTATGCTATGCAATTT
TCATCACTGCTGAGCTCAGAGAGAATGTTCATATGCGCATGAGCACTTGCATCGCAGACCTTTTTTT----ATCCAGAGG
CACAAGATGGAAATAGAATAATAACCCACTTTATCGATGCACTATCTCATGCACAGCTGTATTTTGTACTACTACATGTA
ATGCAGCCTGTGTAAGCTGTTCCATTATTAGTTGTTTGGTGTCCTTATAATCAACAGAAGATCTATGATCTCTCTGTGAG
TGTGTATGTCAGTGTCTGGTGACTCTGGTCATGTGTCGATCTGGCTATGGATCTAGTGGATGATAATACATATGCATATC
TATTAATTTTAATTAATTACAGGTAGTATTTTGTC---------------------------------------------
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--GTGCTTTCAGTTATACCAGGTGGATATATCCATGAGATTTGATCCTTGGCGACGTCTCTGTATAG--TGTACATTTAA
TCTGCTAAAGAGTTTTGAAACATATATAT--TACTACCTCTGTACCAAAATATAAGACGTTTTGGTAGGCCA-TTTTATA
GCCTACCAAAGTGTCTTATATTTTT--TATACGGAGGTAATACTTTGGAAAAAGCAAACTGATAAAGGGT--CATGGTTT
CAAACGGTTAATTAAGATATTGTTATATGTCTGGCATGTAACATAATTATAACAAATTCATGGATAATGTGTATGTGTTA
TAGACATCTTAGAAATGCAGATCCACACAA-TGCAGGTGGGAGTGTGCCTCGGTTAACTTTTCCAGGGGATATCA
>chr3A_3
--AAAAATCGTCATGCTAAGGCCACATG--GGACCAACGCAGCAGAATAGCAATCAACACCGATGAAGAGAAACTTAGAT
CGGAAGGATCAAACTTGTAGTTACATGAACA----------AAGACAG----------GATCCACCGAAGACAAACGCCG
ATTGAATCCCGTGAGATCCACCGGAGACAAACCTCCACGCGCCCTCCGAAGATGCTAGAATCACCATCGG-ACGGGCACT
AAGCAGGAAAAACTTTATTCCATCTTCAGAGAGCTGTCGTCGCCTCTACTAATTTTATTGTTGATTCCAAATGATACCAA
GAGATCTAAAAGTCAACAAAAAACTACCT---------------------CACGTACGTAGCAAAATTTATGAAGAACCA
ATGCTTTACTTATCGGAAATCATAAAATTT-TATGTCAGATTTTTAAGCACGACAAATCTGACGTTTTGGGTGACAAATT
ATGTTGTCCCCTGCATAGCAATTTCCTTCAGCAAAGGTGGATAATCCCGACAAAAACTGAGTATGAAAAAAATTTAG---
-------------------CATGCTTGTGACAACATAATTTACCATC-AAAACATCAGATTTTCCATGCTTAAAAATCTG
ACATTTGTAACGAATTATTTATTAGCAGATTTCCTGCTATATTTATTGTGGTAGTATTGAATAGTGACTTAAAGAAGAGT
ATCTACTTGCAAATTACTCTCCTAAGTAACCAGGGAGACAATTGATGGCAAAGATCCTAGGAGATCACCACCTAACTAAT
TAAAATGCATTGCCCGCTTTTAAAATTCCTGGATTTTTATTTCAAGCGATATGGTTTTGGGGCACATGGTGTTCACTATA
TTCAAAAGATGGCCATGCCACTAGAATACTAGATGTAATTTTAAAATTTGAGGCAAGAAAAAGCTTGGGAGAGCAAGTCT
CCCTTTTAATAAAGAGTTGGGATATATTGGCCTGCAAGGAGATCTCTCCCTTTCATTTTAAAAGAGGTTGTGTGCATCAT
CCAATCAACC--CTCTCTCTCTCCTCCTAGCTAGCTAGCTTGTTCATCTTGTTCTTCCAAGTCTTCCTGCTAGGTCTCTC
TTCGGGGATATGAGTGGGAACAACTTTGGGGACAGCATGGGGTGGGGTAGATCGCCCGGCTCCAGGAAGGGCAAGAGAGG
CGGCGGCAGCAGCGGCGGCAGTGGCGCCGACAAGCCGAAGCAGCCGCAGCGGGGGCTCGGCGTGGCGCAGCTCGAGAAGA
TTAGGTTACAGAGCGAAATGGCTGAGTACTTCCATCCTCTTGGTGGTCAGCCACCCAGCTTGATCCACAGAACGGCCAGC
CTCAATTTGGTGAGTGAAGACACATCTTGCAAAGCTGAAGCGAACATATGTGTATATGCATATTTTGTGTGTATGGATTT
GCTTGCGATTTTCGTAAGATTGGGCGTTTCTGATTCCTTGCGTCTTTGGAATGGATCTATCGAGCAGGAGGATACGCGGG
CGTCAACGTCCTCGCTCTCATCGTCCCCATCGTCCCCCTTCCATGCTACCGCCGTCTCGTCGGCCTTCCCGGTCCATCCG
AATTTCGGGGTAGGCTGTCATCTTTTCCCCTTCATGTTGTTTCAGGAAGAAATTAATTGGTATAAGAAAAACTTGATATA
GGTACTCGTTATATGTATATATATGTGGAAGC-AGTAGAAGTAAGTACTGATCTTCATCTTTTGCGAGTGAACAAGTACT
GATATTCTTTTCACCAAAGTGAGATTTTGAGTTTTCTTCGTGATAAAC-----AGTGAAGAAACTACTTGTCTTTGAATT
GTTTCAAAACAAAAATGAACAATCATTCTTTCCCGATTTTGAAATGTTGCAAAGCCTGGGGTGAAAAAAGGGGAGAAATG
ATGTGGTTACAGGATGCAATTTCCTCTTCAGTTAATTTTAGATTTGTTTCCAGTTAGGTGTGCTAGTTCTGCCTGTTCTC
TTTCTTCTTCACTCGTTCTTAATTTGTACTACTACTACTTATTTTCTCCTTGATCATAGATATCGCCATTATCGCGTTAT
CTAAGCAGTTATCCTGACAAGGATCTCGTCCGTACTGTTTTCATGATACGAAAAATCTACATGATT--AAACTTTCTCTG
ATCACGTCATTTGTTTAATTATCATCAGCTTTCGTGCTGTATGTATCTTGTTTGTTCTTCCATATGCGCGTGAGCTACAT
ATCAAGATCTCTTACGACATCTCTGGCTTTATCATGCACAGTTAGCATATGCGGAGAGAGGAGACGCGCGATACGGTGAA
TTCCAGACTCCCATCGTCAGGTACTGCACACAACTTCA-----------------------------------------G
TAGTCCTTGAATTTACCCGGAATAACAAGCTACA-----------------------------------------GCTCC
AACTAACAACTGCAACATCTGCATATGCCTGCCAACCAGATCTCCAAGCAGCAACACTATCTACGGGCCACCACATTACG
CGCATCCTGGTGTCACATTGCCACTGTTTGCACCAGAGGTATGTCTCTCTAGATGCAGATCATGGAGACAGATGGACGAG
T--TGAATGGCTGATCAAACAGCATTATACACTGCGAAGTTATCTTTTTGACTCATGTGGTTCTTAACCATTTTTATTTT
CTGTAGGAATCTACCGGTCTGAGAGGGCACCATGACCGGAGCCGGTCGGCTGATTCGACGAGTATGAACTCCGACGATCC
AGAAGACGTGGATCTCGAGCTCAAGCTATGATCCACAAATG---TTCTTCTCCTTCTTACGTTCATCTCTCCTCTGATCT
TATACGACAGTTCCTTTCTTTAGCCTTCATGGGGTTTTCCTTCCTTGTGGTGCAATAAGTTTCTGAATTGGTGCCACTAG
CTAGAACCAAGGATTTGCCAGCTTGTGTAATGCGCAAAAGATAAAAAGAGAGGAATAGCAATTCACATTATTTTTTACGT
CAAGACATGATGTTGTATGGGTATGGCCATATGGATGCAAGTCGTTTTGATTGTACTACTATACAAACATAGATGTGTTG
ACTCTTGCC-TGAAACTGCATGCTAGCATACACTGACACAGTTTCGTACATGATTGCTATTAATTTATGCTATGCAATTT
TCATCACTGCTGAGCTCAGAGAGAATGTTCATATGCGCATGAGCACTTGCATCGCAGACCTTTTGTT--TTATCCAGAAG
CACAAGATGGAAATAGAATAATAACCCACTTTATCAATGCACTATCTCATGCACAGCTGTATTTTGTACTACTAGATGTA
ATGCAGCCTGTGTAAGCTGTTCCATTATTAGTTGTTTGGTGTCCTTATAATCAACAGAAGATCTATGATCTCTCTGTGAA
TGTGTATGTCAGTGTCTGGTGACTCTGGTCATGTGTCGATCTGGCTATGGATCTAGTGGATGATAATACATATGCATATC
TATTAATGTTAATTAATTACAGGTAGTATTTTGTCATGCA----------------------------------------
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---TGCTTTCAGTTATACCAGGTGGATATATCCATGAGATTTGATCCTTGTCGACGTCTCTGTATAGTATGTACATTTAA
TCTGATAAAGAGTTTTGAAACATATATAT--TACTACCTTTGTATCAAAATATAAGACGTTTTTGTAGGCCA-TTTTATA
GCCTACCAAACCGTCTTGTATTTTTTTGATACGGAGGTAATACTTTGGAAAAAGCAAACTGATAAAGGGTCAC--GGTTT
CAAACAGTTAATTAAGATATTGTTATATGTCTGACATGTGACATAATTATGACAAATTCATGGATAATTTGTATGTGTTA
TAGACATCTTAGAAATGCAGATCCACACAA-TGCAGGTGGGAGTGTGGCTCGGTTAACTTTTCCAGGGGATATCA
>chr3B_4
---AAAGTCGTCGTGCTAAGGCCACATA--AGACCAGCGCAGCAGAACAACAATCACCGCCGATGAAGAGAAACGTAGAT
CG-AAGGATCAAACTGGTAGTCACAAGAACA----------CAGAGGAACGAAGAAATGATCCATCGAAGACCGCTGACC
GAATCTGCA----AGATCCACCAGAGACAAACGTCCACATGCCCTCCGAAGATGCTAAAATCATCACCGAAACGGGGACT
AAGCAGGAAGAACTTTATTTCATCTTCAGAGAGCCGTCGTCACCTCTACTAATTTTGTTGTTGATCCCAAATGATA-CGA
GAGGTCGAAGAGTCAAGAAAGAACTGCCTCTACTAGTGTTAATGCCAGCACATGAACGTAGCAAAATTAATCAAGAACCA
ATGCTTTATTTATCGGAAATCTTAAAAATCATATGTTGGATTTTTAAGCACGACAA---TGACCTTTTGGATGAC-AATT
ATGTTGTTGCGTGCATAGCAATTTCCTTCAGCAAAGATGGATAATCCCGACAAAAAACGAGTATGTCAAAAATTTACAAT
GCTTGCTAAATAAATTTGTCATGCTCGTGACAACATAATTTACCGTCCAAACCATCAGATTTTCCATGCTTCAAAATCTG
GCATTTGTAGCGAATTATTTATTAGCCGATTTCCTGCTATATTTGTTATTGTAGCATTGAATAGTGACTTAAAGAAGAGT
ATCTACGTGCAAATTACTCGCCAAAGTAACCAAGGAGACAATTGATGGCAAAGATCCTAGGAGATCACCACCTAACTAAT
TAAAATGCATTGCCCGCTTTTAAAATTTCTAGATTTTTATTTCAAGCGATAGGGTTTTGGGGCACATG-TGTTCACTATA
TTCAAAAGATGGCCATGCCACTAGAATACTAGATGTGA-TTTTAAATTTGAGGCAAG-AAAAGCTTGGGAGAGCAAGTCT
CCCTTTTAATAAAGAGTTGGGATATATTGGCCTGCAAGGAGATCTCTCCCTTTCATTTTAAAAGAGGTTGTGTGCATCAT
CCAATCAACC--CTCTCTCTCTCCTCCTAGCTAGCTAGCTTGTTCATCTTGTTCTTCCAAGTCTTCCTGCTAGGTCTCTC
TTCGGGGATATGAGTGGGAACAACTTTGGGGACAGCATGGGGTGGGGCAGATCGTCCGGCTCCAGGAAGGGCAAGAGAGG
CGGCAGCAGCAGCGGCGGCAGTGGCGCCGACAAGCCGAAGCAGCCGCAGCGGGGGCTCGGCGTGGCGCAGCTCGAGAAGA
TTAGGTTACAGAGCGAAATGGCTGAGTACTTCCATCCTCTTGGTGGTCAGCCACCGAGCTTGATCCACAGAACGGCCAGC
CTCAATTTGGTGAGTGAGGACACATCTTGCAAAGCTGAAGCGAACATATGTGTATATGCGTATTTTGTGTGTATGGATTT
GCTTGCGATTTTCATAAGATTGGGCGTTTCTGATTCCTTGCGTCTTTGGAATGGATCTATCGAGCAGGAGGATACGCGGG
CGTCAACGTCCTCGCTCTCATCGTCCCCATCGTCCCCCTTCCAGGCTACCGCCGTCTCGTCGGCCTTCCCGGTCCATCCG
AATTTTGGGGTAGGCTGTCATCTTTTCCCCTTCATGCTGTTTTAGGAACAAATTAATTGGTATACGAAAAACTGGATATA
GGT-------------ATCTATATGTGGAAGCAAGTAGAAACAAGTCTTGATCTTCTTTTTTTGCGAGTGAAAAAAAAAA
CTATGG----------AAGTGAGATTTTGAGCTTCTTT-GTGAATTGTGATAGAGTGAAGAAACTAGCTGTCTTTGAATT
GTTTCAAAACAAAAATTAGCAATCATTATTGAA-----------------------------------------------
-------------------------------TTAATTTGAGATTTGTTTCCAGTTAGGTGTGCTTGCTCTACCCGTTCTC
TTGCTTCTTCCCTAGTTATTAATTTG---------TACTTATTTTCTCCTTGATCATAGATATCGTCATTATCGCGTTAT
CTAAGCAGTTATTCTGACAAGGATCTCGTCCGTACTGTTTTCATGATACGAAAAATCTACATGAGATCAAACTTTCTCTG
ACATCATCTT-------ATTATCATCAGCTTTCGTGCTGTATGTACCTTGTTTGTTCTTCCATATGCACGTGAGCTATGT
ATCAAGATCTCTTACGATATCTCCGGTCTTATCATGTACAGATGGCATATGGGGAGAGAGGAGACGCTCGATATGGTGAA
TTCCAGACTCCCATCGTAAGGTACTGCACACA-CTTCA-----------------------------------------T
TAATCCTTGAATTTACCCGGAATAACAAGCTACAACTCCATTATTCCTTGAATTTACCCGGAATAACAAGCTATAGCTCC
AACTAACAACTGCAACATCTGCATATGCCTGCCAACCAGATCACCAAGCAGCAGCACTATCTACGGGCCACCACATTACG
CGCATCCTGGTGTCACATTGCCACTGTTTGCACCAGAGGTATGTCTCTCTACATGCAGATCATGGAGACAGATGGACAAG
T--TGAATGGCTGATCAAAAAGCATTATACACTCCGAAGTTATCTTTTTAACTCATGTGGTTCTTAACCATTTTTATTTT
CTGTAGGAATCTACCCGTCTGAGAGGGCACCATGACCGGAGCCGGTCGGCTGATTCGACGAGTATGAATTCCGACGATCC
AGAAGACGTGGATCTCGAGCTCAAGCTATGATCCTCAAATGTTCTTCTCCT---TCTTACGTTCATCTCTCCTCTGATCT
TATACGACAGTTCCTTTCTTTAGCCTGCATGGGGTTTTCCTTCCTTGTGGTGCAATAAGTTTCTGAATTGGTGCCACTAG
CTAGAACCAAGGATTTGCCAGCTTGTGTAATGCGCAAAAGATAAAAAGAGAGGAATAGCAATTCACATTATTTTTTACGT
CAAGACATGATGTTGTATGGGTATGGCCATATGGATGCAAGTCGTTTTGATTGTACTACTATACAAACATAGATGTGTTG
ACTCTTGCC-TGAAACTGCATGCTAGCATACACTGACACAGTTTCGTACATGAGTGCTATTAATTTATGCTATGCAATTT
TCATCACTGCTGAGCTCAGAGAGAATGTTCATATGCGCATGAGCACTTGCATCGCAGATCTTTTTTTATTTATCCAGAGG
CACAAGATGGAAATAGAATAATAACCCACTTTATCAATGCACTATCTCATGCACAGCTGTATTTTGTACTACTACATGTA
ATGCAGCCTGTGTAAGCTGTTCCATTATTAGTTGTTTGGTGTCCTTATAATCAACAGAAGATCTATGATCTCTCTGTGAG
TGTGTATGTCAGTGTCTGGTGACTCTGGTCATGTGTCGATCTGGCTATGGGTCTAGTGGATGATAATACATATGCATATC
TATTAATGTTAATTAATTACAAGTAGTATTTTGTCGTGCTTTCAGTTATTTTTTTTTTTTTTGGAAAAGGGGCCGCGCCC
CAGCCTCTGCATCAGAATGATGCATACGGCTCATATTATTAATAATACGAAACCAATCTCAAAAGTACAGAAAGGTCATA
GTGCAAATTAAAACAAAATCTGCAAGTAAGAAAAGCTGAAAGCCACAACCGGCTGGCAAAACTATAGGATCACTCTATCC
TATTACATGACCGCCATCCAAACCGGTTGAAAATATCCCGAGCTACCATCTCCCATCGGGTAGACGCAGTAACCAAACGC
TCCCTGGCCTCCGTCGGAGTGAGTAGCGACCACATACGGATGAACGCTGTGGCTCTGAAAACAACCAGTGGTGGTTTCGA
CGTCCTGCAACTTGGCCGCTCTCACAGAGCACCGTAGTTGAATGTCGTCGACGTCCGGCTGCTCCTGCAACCGCCCGCTG
ATCCGCCTCCCCTGGGAGACAGGGTCCGGGATGCCACCAAAAGCGATGACCTCATCGCGAGAAGCCCTGCACAGGGAGAG
ACCACCTGCCCCTCCCCCCACAGCGACGCCCTGAGCCGCCGTCACCGGCGCAGAAGTAGTAACCGACGTTACTGCCTGCC
GCGTGAACACCGGCGATCCGCCAGCAGTCGCCGGCTCCGGAGCGGCCCGGCCGCCGCGCACCGAAGCGTGGGCAGAATCT
GCAGAGGCCCCACCCAGCCCTCCCAACGCTGTGGGGGCCGGTGAGGCATGTACCCCCAGTCCGGACGCACCAACGGCTGC
GAGAAGCGGCGTCGACGCCTCCCTAGCCGTGTCGGCCGGCGAAAACACCTCATGCCTGCTGGACCCGTCCACGGCCTTCC
GGGCCGAGGTGAGCGAAAGAGCAGCGCTGGTCCTGACCATACTCCTGGCTAGCTCCACCGAGTCGTCCAGAATAGTCAAG
TCCAGCCGCGGAACAGGTGGTGACGGAGAAGGAAGCACCTCCTGAACAGTCAGTCTGTCCTCCAAAGTCGTCAAATCCTC
CGGCATCACCGGTGGCACGTGCTCAGACGGATCATCCAACTCCACACGATCACTCCAAAGACGCGAAGGTGCAGAGAAAG
CCCCAACAGAACCAAGCTGAAGCATATTGGATGGTGCCGAGCCCGTAGTTTTCCCCCTAGCAGACTCAGTTGGTTTAGGC
GATTCCACGGGCCTGGAATCCCTGTCACCGTCACCGGGTGCATCCTCTCCCCGGTGCCCAGAAGCGCCACCCCCCTCAGA
GGTATCCATAGGTAGCAACTCCTCAAAATCCTGAAACAAGTCCGGGTCCTCATACTCGACATTCAACATGTAAGCAAACC
CCTCATAACACCATCTGACCACATCTGGCAAGAACTGAATGTTGGCCACGCTAATCAACAGACGAGCAACACCGTGAGCA
CGAGTAAAAGGCATGTCCACCTGCTCAGTCTTACCGAGCAAGGACCCCAAGCTCCACGTGACAAAAAAATCATCCAATGG
TTCGGACGGTGCCCCCGAAAAGCGAACCCAGATCTGAGTCAGTGATGTGCCCTGCGGCTCCTTCTTCTTCCACTCATCAA
ACTGCAACACAAAGCTAGTTCCAGTAACTCGACTCATGCCAAACTTGAGGATCCTCTTCTGATCCTCTTTAGATGGAAAA
TCCACTTTATAAGAATTATCAGAAAGCTTCAACAAGGACCAGTTGAAATTTCCTGGAGCCAACTCCCGTAACTGCTGAAT
AATCTGGGCTTCGGTGAGCGGTCCGGTGACCACTTTGACCACCCCAGGGAAGGAGGTTTCAACTACCGGAGTCATCGAAG
CCACACTTGGTGACTCAAAGAACATCAACTCAGAGCAACATAGCCCGTAGATATTAAGCGTCGTTTTGGGCCCGAGAAGA
AGCGGACACTCAGCCCCCACATGCTTAGGTTTCCAACAAATCTCACATAACTCAGCAGAACAGTCCACCATGAAGTGACC
CGTCTCCCCACAGCGGAAACAAACTAATTTCTTCTTCTTAGCCGCCCACTTAGACAGCTTGTCACCTCCGGCCTTCTCTG
AGCCTTTATCAGACGTAGCATCCTCCGACTGTGGTACCATCGGGACAACCACATCAGCAAGAGCTTTAGCCGTCTCCACC
ACCGTCTGGTTCAGAGACGCCTCATCAGTGGCCATGTCAGAAAGGTCCGAGTCGGCACCGGGCAAAGTACGCCCACCACG
TCCACCCCGGAAGCGTCCTCGCCCACCACGGAAGCGCCCTCGGAAGCGGCTGGGGCCAACCGCGCCCTCGACGAAATTCC
CCGGCGGTCCCTGAAAACCCTGGCCAGCATGACCCTGATCATTCCAAGCATAACCTCGCCCACCACCTGTGGACGACGAA
CCTCGGTGCAGTCCCTGACCATACGCGTCGTAGCCATCATCTCCCCATTGACCACGGGGAGGATTGCGGTGATCTCCCGC
GAAAGCACCCGTCCCACGGCCGGCAGCACCAAAGGCGGCACCACCACGGCCGGCAACCCCGTTAGGAGCGCCACCCTGAC
CAGCAGCCATTTGCCTAGGCCAGGGACGGTGCGGCTGTGGTGCGCCCGCATGAGTAGGCGGCACCCCCGCCCTGGCAGCG
ACCGGAGCAGCTGCCGCCGGTGCTTGAACCGCAGCCGGTGCTGCAGCCACTGCCGGAGTTGCAGCTGCTGCCGGTGGTGC
AGCCGCTGCCGGTGCTGCAGCCGCAACTGCGCCAGCCCCAACAACAGCCGGCCCGCCAGGCGCAGCTCTCGCGGGCGCCT
TCGCCGTGGTCGGCGCCCCCCTTGCCGGCGGCGGACCCTTGGGCGGCATACAGGCAGCAGCAGTCGCAGAAACCCTCCTG
ATCCTCCGAACTAGAGCCGAGGGGAAACCACAGAGACCCCGGCGGCGAACCCTAGCGCGCTCGTGGATCGACGAACGTGC
TCGTGCTTTCAGTTATACCAGGTGGATATATCCATGAGATTTAATCCTTGGCGACGTCTCTCTATAG--TGTACATTTAA
TCTGATAAAGAGTTTTGAAACCTATATATCTTACTACCTCTGTACCAAAATATAAGACATTTTGGTAGGCTATTTTTATA
GCCTACCAAAGTGTCTTATATTTTT--GATACGGAGGTAATACTTTGGAAAAAGCAAACTGATAAAGGGT--C--GGTTT
CAAACAGTTAATTAAGATATTGTTATATGTCTGGCATGTAACATAATTATAACAAATTCATGGATAATT-GTATGTGTTA
TAGACATCTTAGAAATGCAGATCCACACAAATGCAGGTGGGAGTGTGCCTCGGTTACCTTTTCCAGGGGATATCA
>SNPs
SS-----------------S--------SS-----------S-------------SS---------------S-------
--S-----------S----------S-----SSSSSSSSSS--------------------------------------S
---------S----------SS-------------------------------------------------SSS------
---SS-----------------------S-----------------------------------------------S---
----S-----------------------------S-----S-S-----S-------------------------------
--------------------------------------------------------------S-----------------
-----------------------------------------S-----------------------------------S--
----------S---S--S---------S--S-------------------------------------------------
----------S-----------------------------------------S---------------------------
-----S-------------------------------------------------------------S------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
-----------------S--------------------------------------------------------------
----------SS--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-S----------------SSSSSSSS---------
------------------S-------------------------------------------------------------
--------S------S----------------------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
--S-----------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
-SS-----------------------------------------------------------------------------
------------------------S----------------------S--------------------------S-----
--------------------------------------S---------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
---------------------------S---------------------------------------------SS-----
-----S--------------------------------------------------------------S-----------
---------------------------------------------------------------------------
>forward_234
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GCTAGAATCACCACCGGGAC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>reverse_1993
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GCGTTCTC
TTGCTTCTTCCC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>forward_369
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------TCTACTTGTGTTCACGCCAGA-------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>reverse_2374
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ACCCGGAATAACAAGCTACAACT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>forward_1051
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TGTGCATCAT
CCAATCAACCC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>reverse_2562
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-ACATCCTGGTGTCACATTGC-----------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>forward_1052
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TGTGCATCAT
CCAATCAACCCT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3130
--------------------------------------------------------------------------------
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---------CTGAAACTGCATGCTAGCATACA------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
