>input_sequence_44175
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--------------------------------------------ACCAAATACCTTATGGAGGTCCTAATGACAACTACT
ATGGCTTACATGCCACGATGGATGTGTATGGCCACAAACTAAAACCAGGCCAGTGGAGTACGGCTGGAATTTGGGTTAGT
CATCATGGAGACGGTGCTACGTCAAGCTTTAATTCGATTCAAGCTGGCTGGCATGTAAGGATCATCCCCCCTGCATC---
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---TAGACATTTCCTTTGAATTCGAACCTCAACATGCTGAGTAGTAGTCAATTGCTACAAGCATTCTACTGCAATAATAA
AGACATGACCTTGGCTCCATTCCAGCTTAGAAAAACATCGGAAACATCACAAATAATACATATGTATTGAACTAGATGCA
TGGGCTACACGACCCAACCCCCAAAACAACTAAATTACAATTGTATTTTTCTTCCAGTATGATGTGTAATCCATCACTAA
AAAATAGCTGCTAGTCCTAGAAAATTATCTAAAAACCATCTGTTGTTTTAACATCAATGGAACTATTTGGGAAGAAAACT
CGCCAAATATTTATTTGTTCTTACATTCGTATGCGAGAGAATGTTTTTCACTTGTACACCTTATTTTACAGATTTATCTA
GAGCGTTATGGCGACTGACGTCCTCACTTCTATACCCAATGGACGGTAATGTGATAATGTTGCTATGAGTAATCAGCTGA
CAAGTGATCTCACTCTAAATGGAAACATCATACCATATCATGTTTTTGACCAATGCATGCACATGCATGGTACAGAGAGA
CGGACATGAAGCAACTGGATGCTTCAACATGGATTGCCCTGGCTTCATACGAGCGAATGGCGCTGCCATATCTCCAGGTG
ATGCTATACAACCAGTTTCTGATGTTCCCCATGGGCACATACAGAGTATCACAGTACGAGTGCTTAAGGTGCGAGTGTCA
TCTTTTTTTGTATTTTACATTACATTGTCATGCTATTTTTAATGCCAATAGTTTCCTCATTAAGTCATATCACATGGACG
ATAGTACTTTAGCCTGGATTGTACTCAAATGCGTACAAAATGGTGTGACTTTCTCTATTGATTAACATAGTTTTACTTAA
CTCGAATACTAAACAATCGCAGGACAAAAAAAGCGGAGACTGGTGGGTGTACTATGGCTTCAATAGCGTTCCTACGGGGG
TGGGATACTTCCCAAAGTCATTGTTCAGCTACCTGGCAAATAAGGCAAACCAGTTGGCATTTGGTGGTGCCGTGGTTGCC
CATAGGGCGGCTTCAACTCCTTCGATGGGTAGCGGTTCCTTCCCTAATGGTGGTCAAGGGCGCGCTGCTTCTTTCACTAA
CCTTGGTATCATTGACAAGGAGGGGAACACCAAGCCCATCATGGCAGACTTCCCCACGTTGGTTACTAATAACAAATGCC
ACTCTATTACTCCTATCAATCATGCTGCATGCCTTTATGGCGGTCCTGGAGGTTGTGTGAGATAAGATGTAAGAACCTTT
TATTGAGCTAGCTCGCTCCATATTGTTACTCGCCTAATGAAATAACATGGAGGAGATGACAAATTATGCAAAGACTGTCC
ACTTCTTTACATTGTATTACACTAACATTACTTACTTGCTTACATCGATTTTGAAAAATAGTTCACAAAAATTCAAAACC
AATTATCGATTTCGCAAATAGATCATGCATTTAAAAAATCTAGA-AAAAGTAAAATGAAAGACAAAAAAATAGAAAAGGG
AAAAAGGGGAAATGAAAAAGCCACGAACTGGGGAAATAAA----------------------------------------
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>chr5A_1_TraesCS5A01G504200
AAGCTTATTTTCCCGGGGAATTGGCGGAATGACTTGCACACTTTCACAACTAGAGTTGCCATTTACTTTATTTTTGTTTT
AGCTATTTATCATACAAAAAATTAGATTGAAGTAGGCATCTGTATGCAAGTAAATTATAGTGAAACTAGTGGAATGTACC
TTGAAAAAAGTTATTTG--GTTATTTTTGGGCATTCATATGAGTTGTAAGTTAATTCAATTCACCACTACAATTACAATA
ATGTAGCATTCAAAATATTTAAAAAAATGAGCATATCCAATATCTACATCTTGATGAAGCATGAAGTTTCTTAGTGAAAA
TAGTTCTATTAACTGTCCTAATTTATGGGTAAGGATATATGTATTTGCCAACATAATACTGAGGACATTGTGGTATGTGG
CTCGCTGCGTAGCTATGGGCTGATTGATATCTCTCTTTCCACCCACCCCATATCAATGTATTATAGCGGTGTTTCTTGTT
TAGTTTCTAGAACAATTTCCATTAGAGAATGTTCCATCCGAAATCATACAGACTACATGGGTGTTTACTTTTGTCTTAAT
TATTTGGTGCATCTAAAATCAATTTATAGTAGCCTGGTTGTGGATTTATACAAGAATTATAAGTTTTCACTATTCTAAAA
GATGCCATGAAGATTTTTAGAGGAACACAAAGTGATTTCCACTAGAAAAACAAAAAGATATATGAGAAAGATTGGGCACA
CAACATTTCTTCTTGACATGTTAGTGACAAAAGTAGATTAGTTAGC-CTAATTGTGTTTGGATCCATGTAGTAACTCGAA
CAAACTATTTGTAGCTTGCAAGCGGCTCTTCTAACGATTTCATGTATCCCCATAGAGAATAGCCCCCCTTGATTTTGAAA
AAAC-AAAAAAGTTTAAGCATTCTCCATTTGTACAATGTTATGATTGTATGTTTTCCTCATCCCTTTTCCTAGTTGTTGT
GTATGTCGTTTATATGGGAGCTTTCATTGTGCAGTTTGCGGTACACCAAATACCTTATGGAGGTCCTAATGACAACTACT
ATGGCTTACATGCCACGATGGATGTGTATGGCCACAAACTAAAACCAGGCCAGTGGAGTACGGCTGGAATTTGGGTTAGT
CATCATGGAGACGGTGCTACGTCAAGCTTTAATTCGATTCAAGCTGGCTGGCATGTAAGGATCATCCCCCCTGCATC---
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---TAGACATTTCCTTTGAATTCGAACCTCAACATGCTGAGTAGTAGTCAATTGCTACAAGCATTCTACTGCAATAATAA
AGACATGACCTTGGCTCCATTCCAGCTTAGAAAAACATCGGAAACATCACAAATAATACATATGTATTGAACTAGATGCA
TGGGCTACACGACCCAACCCCCAAAACAACTAAATTACAATTGTATTTTTCTTCCAGTATGATGTGTAATCCATCACTAA
AAAATAGCTGCTAGTCCTAGAAAATTATCTAAAAACCATCTGTTGTTTTAACATCAATGGAACTATTTGGGAAGAAAACT
CGCCAAATATTTATTTGTTCTTACATTCGTATGCGAGAGAATGTTTTTCACTTGTACACCTTATTTTACAGATTTATCTA
GAGCGTTATGGCGACTGACGTCCTCACTTCTATACCCAATGGACGGTAATGTGATAATGTTGCTATGAGTAATCAGCTGA
CAAGTGATCTCACTCTAAATGGAAACATCATACCATATCATGTTTTTGACCAATGCATGCACATGCATGGTACAGAGAGA
CGGACATGAAGCAACTGGATGCTTCAACATGGATTGCCCTGGCTTCATACGAGCGAATGGCGCTGCCATATCTCCAGGTG
ATGCTATACAACCAGTTTCTGATGTTCCCCATGGGCACATACAGAGTATCACAGTACGAGTGCTTAAGGTGCGAGTGTCA
TCTTTTTTTGTATTTTACATTACATTGTCATGCTATTTTTAATGCCAATAGTTTCCTCATTAAGTCATATCACATGGACG
ATAGTACTTTAGCCTGGATTGTACTCAAATGCGTACAAAATGGTGTGACTTTCTCTATTGATTAACATAGTTTTACTTAA
CTCGAATACTAAACAATCGCAGGACAAAAAAAGCGGAGACTGGTGGGTGTACTATGGCTTCAATAGCGTTCCTACGGGGG
TGGGATACTTCCCAAAGTCATTGTTCAGCTACCTGGCAAATAAGGCAAACCAGTTGGCATTTGGTGGTGCCGTGGTTGCC
CATAGGGCGGCTTCAACTCCTTCGATGGGTAGCGGTTCCTTCCCTAATGGTGGTCAAGGGCGCGCTGCTTCTTTCACTAA
CCTTGGTATCATTGACAAGGAGGGGAACACCAAGCCCATCATGGCAGACTTCCCCACGTTGGTTACTAATAACAAATGCC
ACTCTATTACTCCTATCAATCATGCTGCATGCCTTTATGGCGGTCCTGGAGGTTGTGTGAGATAAGATGTAAGAACCTTT
TATTGAGCTAGCTCGCTCCATATTGTTACTCGCCTAATGAAATAACATGGAGGAGATGACAAATTATGCAAAGACTGTCC
ACTTCTTTACATTGTATTACACTAACATTACTTACTTGCTTACATCGATTTTGAAAAATAGTTCACAAAAATTCAAAACC
AATTATCGATTTCGCAAATAGATCATGCATTTAAAAAATCTAGA-AAAAGTAAAATGAAAGACAAAAAAATAGAAAAGGG
AAAAAGGGGAAATGAAAAAGCCACGAACTGGGGAAATAAAAATAAGAAAAAAGCAATTGTTTCACAAACGGGTGGGATAG
CCTACTAGTTGTGTGTTCGAAGCCGGTCGCGTGCATATTTGTTGGGAGTTT-ACAGAAAATAGAATAAGATATTGGCCGG
CCTAGATAAGAGTGCCTTCAGCGCTAGTTAACGAAATGCACGTTAACGGGAGCTGAAGGTGCCGAATAGGAAATACCCAG
CAAATGCACAAGCCCGCTCCCAATGTGTCCTGGTGCAGAGAACATTTTTT-------------TTCATTTTTTTCTCTTT
TGTTTCTTTTCCTTTTCTTTTCTGTTTTTATATTTTGGTTCTTAAAATAAATTTCATCATTACGAAAGTGTTGTAGTTTT
T-----ATTTTTTTAACAAATTCAAGAAAATGTTCCAGGATTTCAAAAGTTGTTCAATTTTTTTTAAATGTGTGA--GAA
TTTTTAAAAATGTTCGTGAATTACAAAAAAATGTTCTAAATTTCAAGAAGGTTCTTGAATTCAAATAAATCATACAAATT
TAAAAAAGTTCATGGATTTCCAAAACAAATGGCGAATATGTAAATTGTTGCCTAGAAGCGGGATCGAGGAAGCGGGAGTT
CTGGCACTCCAAAAGCAAGAACCAGGAAATGACAATATGGTGACCATGGCATCACCCTGGATGGAAGCGATGATGGCAGT
GCCCTGGGTGTAACCGGCAGCGGCTTGTGAGCTAGTCGGCCATATGAACGATGTCGGTGCCCAGCACGGAACCGGCCGTG
GTGGTGGTCGCCATGCTGAGGTCGTGGCCATGGGACTGGTGCATGAGGTGAAGTCGGTTAGTGTCGACCGGTCGTGGGCA
AGGCAACGCCACCCGTGGCGCCGCAACACAGCAGTTATTGGCAATGCCTGTAGAGGCGAAGCATAGGTCACAATGACCAA
ATGTGGGGACACGGCGATGCAGGACGCGGCCGCCTCATGGAAGATTTAGGGCTGGCCGTGTTAGCACCACTACCCCAACT
GGACCTGAAGCCCATGAGAAG
>chr4B_1
AAACTTATTTTCCCGGGGAATTGGCGGAATGACTTGCACACTTTCACAACTAGATTTGTCATTTACTTTATTTTTGTTTT
AGCTGTTTATCATAAAAAA-ATTAGATTGAAGTAGGCATCTATATGCGAGTAAATTATAGGAAAACTAGCAGAATGTACC
TAGAAAAAAGTTATTTGGTGTTATTTTTGGCCATTCATATGAGTTGTAAGTTAATTCAATTCACCACTACAATTACAATA
ATGTAGCATTCAAAATA--TAAAAAAATGAGCATATCNNNNNNNNNNATAT-----------------------------
-------------------------------------------------------------------TTGTGGTATGTGG
CTCGCTGCATAGCCATGGGCTTATTGATATCTCTCTTTCCACCCACCCCATATCATTGTATTATAGCGGTGTTTCTTGTT
TAGTTTCTAGCATAATTTCCATTAGAGAATGTTCCATCCAAAATCATACAGACTACGTGGGTGTTTACTTTTGTCTTAAT
TATTTGGTGCATCTAAAATCAATTTATAGTAGTCTGGTTGTGGATTTATACAAGAATTATGAGTTTTCACTATTTTAAAA
GATGCCATGAAGATTTTTAGAGGAACACAAAGTGATTTCCACTAGAAAAACAAAA-GATATATGAGAAAGATTGGGCACA
CAACATTTCTTCTTGACATGTT-GTGACAAAAGTAGATTAGTTAGCACTAATTGTGTCTGGATCCATGTAGTAACTCGAA
CAAACTATTTGTAGCTTGCAAGCGGCTCTTCTAACGATTTCATGTATCCCCATAGAGAATAGCCCCCCTTGATTTTGAAA
AAAAAAAACAAGTTTAAGCATTCTCCATTTGTACAATGTTTAATTGC-ATGTTTTCCTCATCCTTTTTCCTAGTTGTTGT
GTATGTTGTTTATATGGGAGCTTTCATTGTGCAGTTTGCGGTACACCAAACACCTTATGGAGGTCCTAGTGACAACTACT
ATGGCTTACATGCCACGATGGATGTGTACGGCCACAAACTAAAACCAGGCCAGTGGAGTACGGCTGCAATTTGGGTTAGT
CATCATGGAGACGGTGCTACGTCAAGCTTTAATTCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTAGACATTTCCTTTGAATTCGAACCTCAACATGCTGAGTAGTAGTCAATTACTACAGGCATTCTACTGCAATAATAA
AGACGTGACCTTGGCTCCATTCCAGCTTAGAAAAACATCGGAAACATCACAAATAATACTTCTGTATTG-ACTAGATGCA
TGGGCTACACGCCCCAACCTCCAAAACAACTAAATTACAATTGTATTTT-CTTCCAGTATGGTCTGTAATCCATCACTAA
AAAATAGCAGCTAGTCCTAAAAAATTATCTAAGAAACATCAGTTGTTTTAACATCAATGGAACTATTTGGGAAGAAAACT
CGCCAAATATTTATTTGTTCTTACATTCGTATGTGAGAGAATGTTTTTCACTTGTACACCTTATTTTACAGATTTATCCA
GAGCGTTATGGCGACTCACGTCCTCACTTCTATACCCAATGGACGGTAATGTGTTAATGTTGCTATGAATAATCAGCTGA
CAAGTGATCTCACTCTAAATGGAAACATCATACCATATCATGTTTTTGACCAATGCATGCACATGCATGGTACAGAGAGA
CGGACATGAAGCAACTGGATGCTTCAACATGGATTGCCCTGGCTTCGTACGGGCGAATGGCGCTGCCATATCTCCAGGTG
ATGCTATACAACCAGTTTCTGATGTTCCCCATGGGTACATACAGAGTATCACACTACGAGTGCTTAAGGTGCGAGTGCCA
TCTTTTTTTATATTTTACATTACATTGTCATGCTATTTTTAATGCCAATAGTTTCCTCATTAAGTCATATCACATGGACG
ATAGTACTTTAGCCTGGATTGTACTCAAGTGTGTACAAAATTGTGTGACTTTCGCTATTGATTCACATAGTTTTACTTAA
CTCGAATACTAAACGATCGCAGGACAAAAAAAGCGGAGACTGGTGGGTGTACTACGGCTTCAATAGCGTTCCTACGGGGG
TGGGATATTTCCCAAAGTCATTGTTCACCTACCTGGCAAATAAGGCAAACCAGTTGGCATTTGGTGGTGCTGTGGTTGCC
CACAGGGCGGCTTCAACTCCTCCGATGGGTAGCGGTTCCTTCCCTAATGGTGGTCAAGGGCGCGCTGCTTCTTTCACTAA
CCTTGGTATCATTGACGAGGAGGGGAACAGCAAGCCCATCATGGCAGACTTTCCCACGTTAGTTACTAATAACAAATGCC
ACTTTATTACTCCTATCAATCATGCTGCATGCCTTTATGGCGGTCCTGGAGGTTGTGTGAGATAAGATGTAAGAACCTTT
TATTGAGCTAGCTCGCTCCATATTGTTACTCGCCTAATGAAATAACATGGAGGAGATGACAAATTATGCAAAGACTGTCC
GCTTCTTTACATTGTATTACACCAACATTAATTACTTGCTTACATCAATTTTGAAGAATAGTTCACAAAAATTCAAAAC-
AATTATAAATTTTGCAAATATATCATGCATTTCAAAAATAAAAATAAAAGTAAAATGAAAGACAAAAAA-TAGAAAAGG-
-AAAAAGGGAAATGAAAAAGCCACAAACAGGGGAAAGAAAAATAAGAAAAAATCAATTGTTTCACAAACGGGTGGGATAG
CCTACTAGTTGCGTGTTCGAAGCCGGTCGCGTGGATATTTGTTGGGAGTTTTACAGAAAATAGAATGGGATATTGGCCGG
CCCAGATAAGAGTGCCTTCAGCGCTAGTTAACGAAATGCACGTTAACGGGCGTTGAAGGTGCCGAATAGGAAATACCCAG
CAAATCCACACGCCCGCTCCCAATGTGTCCTGGCATAGAGAACATTTTTTTTTTCATTTTCTCTTCATTTTTTTCTCTTT
TGTTTCTTTTCCTTTTATTTTCTGTTTTTATATTTTGGTTCTTAAAATAAATTTCATCATTACAAAAGTGTTGTAATTTT
TTTTTAATTTTTTTAACAAATTCAAGAAAATGTTCCAAGATTTCAAAAGCTGTTCATTTTTTTAAAAAAATGTGTGTGAA
TTTTTAAAAATGTTCATGAATTACAAAAAAATGTTCTTTATTTCAAGAAGGTTCTTGAATTCAAATAAATCATACAAATC
TAAAAAAGTTCATGGATTTCCAAAACAAATGGCGAATATGTAAATTGTTGCCCAGAAGCGGGATCGAGGAAGCGGGAGTG
CTGGCACTCCAGAAGCAAGAACCAGGAAATGACAATATGGTGCCCGTGGCATCACACTGGGTGGAAGCGATGATGGCGGT
GCCCTAGGTGTAACCGGCAACGGCTTGTGAGCTGTCAGCCGTAA-GAACGATGTCGGTACCCAGCATGGAACCGGCCGTG
GTGGTGGTCGCCATGCTGAGGTCGTGGCCATGGGACAGGTGCACGAGGTTGAAGT-------------------------
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>SNPs
--S---------------------------------------------------S---S---------------------
----S---------S----S---------------------S-----S------------SS-------SS---------
-S----------------------------S-------------------------------------------------
-----------------SS------------------SSSSSSSSSS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
--------S----S-------S---------------------------------S------------------------
----------S-S--------------------------S----------------S-----------------------
--------------------------------S---------------------------S-------------S-----
-------------------------------------------------------S------------------------
----------------------S----------------------------------S----------------------
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---S----S-------------------------------SSSS-SSS---------------S----------------
------S-------------------------------------------S-----------------S-----------
----------------------------S-------------------------------------S-------------
--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
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-----------------------------------------------------S-----S--------------------
----S------------------------------------------------------S-S-------S----------
-----------S-------S-----------------------------S-----------S-S----------------
--------S----------S------------S--S----S---------------------------------------
---------------------------------S--------------------------------------------S-
----------------S------------------------------------S--------------S-----------
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----------------------------------------------S----S----------------------------
-----------------------------------S-----------------S-----------------------S--
---------S----------------------------------------------------------------------
----------------------------S--S---------S-----------S---------S----------------
--------------S---------------------------------------S-------------------------
-------S-------------------S------------------------------------------S---------
--S------------------S----------------------------------------------------------
----------------S------------S---------------------S--------S-------------------
---S----------------------------------------------------------------------------
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S---------------------S-------S---------------S--------S-----------------------S
------SS----S-------S-----------S------SS-S--------------------------S---------S
S----S------------------S---S-------S---------------S---------------------------
-----------S---------------------S--------------------------------SS------------
--S-----------------------------------------------S-S---------------------------
-----S----S----------------------SSS--------------------------------------------
----------------S----------------------------------------------S-----------S----
-------------------------------------S-----------S------S------SS---SS----S-----
---------------S---------------------SS----------------------------------------S
----------------------------------------------------S--------------------------S
-----------S------------------------------S--S---------S----S----------------S--
-----S-------------S-------------SSSS-S-SSS-S-------------S-------S-------------
------------------------------------S------S-----SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_456
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------------------------------------TTCCACCCACCCCATATCAA------------------------
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>reverse_1452
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-----------ACCCAACCCCCAAAACAACT-------------------------------------------------
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>forward_1177
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-------------------------------------TTCAAGCTGGCTGGCATGTA-----------------------
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>reverse_3011
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--------------------------------------------------AGCTGAAGGTGCCGAATAGG----------
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