>input_sequence_44108
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--------------------ATGGCGCCCAACCACCGCCCCCGCGACCTGCTCCTTCTCGCCGCGGCGCTCCTGCTCTCC
GCCTCCTGCGCCGCCGCCGCCGACTTCGAGTACTGCAGTGAGTGCTCCGAACTCTCCTTTTGCGGCTAAATCATCCCCGT
TTTGACTTCTGAGATTCCGGCGGATTGTGTGTGCGATGCGAGCTTCTGTTGGTGTTTGGTTCCGCAGAAAAGGGGCGCCA
CTATCCGGTGAAGGTGAGAGGTGTGGAGATCGTCCCCGACCCCGTCGTGCGCGGCGAGCCCGCCACCTTCAAGATCTCCG
CCTCCACCGGTAAGATTTCGTCGAATAGCCTGAACTCGTTGCGACTGGGCTTGTGAATTGCGACGCCGTGTGCTCATGAC
TGCTGTCGGGCAACTTGAATCTA---------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GCTTGTTAGTAGAGTACTCCCTCTTATTGGCTTATTGTTGGTAGCAGCCTACCCC
AGAGTTTAGATCGGTGTCTCCGTGTGTATGTGGTAGTCAGATCAAATCGATGCACTTTAGCTTGTTTTTT-GATGTATCA
ATTTTTTCGAA------GAATCAAATTAGTGCCTTGCTGAAGGCTTCGCTGGCGCTATCCATGTACTGTTATATGTGAAT
TTAGTCATGTGCGCGGTAACATTTCAAGTTTTCAACCATGAATTGGAGTTTTGTGAAGGACCTAATGTGGTGTGTT--AG
AAACTGAGAATTGGGGAATATGTCTCTTTAGGTGTTTCTGTAAGACTTCTTTGGAGTTTGGACAA---GGCAGCTGGTAC
TGTCTTTCTATATTTTTCACCTGGATGTTTGGACTGTGGAACGTCCAATTTTTGTTGGCTGCAAATTGCAGTGATGCGTG
CATGTTTGTCGGCCTTACTTTCATCACTCCCCTCTGTTTGTCGATGCTTGTATTTGAGTTTGCCGAGGGTTCCCGAGTCT
CTTAAAATTCACCTCACATGTCTACCGAAATGGTTTGTAGCCTTGTAGGAGTATGTCCCAGTTAGTTGTTCTGATAGCCA
AGAGGTGAAAGAAATGTGAGTTCTAACATGTGGTTCCTGCAAAACACTTTATAGATTCCATTCTG-----AGTACCATGG
TA-----GGCTTTAACATTTAAATTATTATGACGGGGATCTGGCAGGGTTTCTGCTGAAATATAATTTCTTTTTGTCTGT
TGGGTCTAGTCTATCCTGGATCTGCTACTAGTGTCTGCACACGCACACACACGCATGAACGGCATGTACCCATATTTCAC
TGTATTTTTCTGTAACTAGAATGTTTGTTTTTTCTAGTTGCTTCCGTCCTCTGAATCTCCCTGATACATTTTTACCATTG
TTTACACCTGACAGATAAAACCATCACCAAAGGGAAGCTGGTGGTAGATGTGTGGTACTTCTTTTTCCACGTCGATTCAG
AGACTCATGACTTGTGTGCTGGGACTCCCTGTCCCGCAACAGGCGAATTCGAACTAACCAGCGAACAGACCTTGCCATCT
TACACCCCGCCAGTAAGCATACCCGCAGTGCACACTCAATTTCGGTGCTGAAC-TTGTCTAGATATTTTCCCTTGTAGTG
CTTTGAGATAGACGAGAGGCTCAATAGGTCGCCGCAAGTAAGATCACATCCAGGCATCCTGACGTTTTGTGTTGCTGTGA
TGTGCTTCAGGGTTCTTACAGCCTCCAGATGAAGCTGATGGGAGACAAGAACGAGGAGCTGACCTGCATCTCGTTCGGGT
TCAGCATCGGGTTCGTCACGCCTGTCGCCGTTATGTGA------------------------------------------
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-----------------------------------------
>chr5B_1_TraesCS5B01G428200
TTCAAAAAAACAGCTATTTAAAAAAGCATGGTAAAAGATCTATTTCAGGATCAATCTAGTAATATCAATTGAATATTGTT
CATAATGGATTCTTTCTAT----------AAACATACCTATATTTGTTATGCACATATTATATTATGGAATTTTTTTGCG
AGAAACTTCTAATCTATTCATCTTCAATCATGGCAGTACAAAGAACAACAGAGGTAATAAAAATTACAACCAAGTCCGTG
GACTACCTAGCGACGACTATATTATATTATGGATTAAAGGGGACAATATACGATTATAAAGTTAGACAAATAAATCAAGA
ATCAAATCATGGGCTTATTACAATTTGAAGGTGATTCACTCGAATGCACTTGCATCTCTCTTTGTAAGTCAAGGAAAAAC
TAGTATGGTTAACATATTTTTTTTGCGGGTGGGTATGGTTAATATATGTTCTAACCATTGGGCATGACATCCAATCAATC
TTCAGATAGGATTCAAGCAATATACGAAAGGATGTTAACAAAAGAAATTATATTCACCGTAACTCCTTCCGGAGACTCAA
GCTATAAATCCAAATTTTTAAAAGTGCCAATCTACTGGAGGAAATCTTATCTATCCGTCCTTAAAAGGTATGAAATCGAA
ACTACCATAAGGATATGAATATTTTGAAGAGAGTGCAAACACATAATTTAATTTTGAGCTCATGTCATCAACATCTAAAA
CAGATACGGAGTATTATTTGTTTGCTTTGAGCATGTGAGAGAAACAGACAAGCTT-------------------------
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-------------------------GTAAAGTCAACTGAAGGCCTCCACCCGGTCCAAACTAAGCCCAACCGAGTGCACA
CACATATCTCTGTCTCCGTTATTGAGTGCTCACCGACGCGACTCGTGTCCACCGGCTCCGTCTAGTCGCGGCACCCTTCA
CCTCAAAAGAAAAAAGAAAAAAAAGTGCTCACCGATGCGGCTCGTGTCCACCTGCTCCGTCTAGTCGCGACACCCGCACA
TCTGGTTCGCAGTCGCAGCGATGGCGCCCAACCACCGCCCCCGCGACCTGCTCCTTCTCGCCGCGGCGCTCCTGCTCTCC
GCCTCCTGCGCCGCCGCCGCCGACTTCGAGTACTGCAGTGAGTGCTCCGAACTCTCCTTTTGCGGCTAAATCATCCCCGT
TTTGACTTCTGAGATTCCGGCGGATTGTGTGTGCGATGCGAGCTTCTGTTGGTGTTTGGTTCCGCAGAAAAGGGGCGCCA
CTATCCGGTGAAGGTGAGAGGTGTGGAGATCGTCCCCGACCCCGTCGTGCGCGGCGAGCCCGCCACCTTCAAGATCTCCG
CCTCCACCGGTAAGATTTCGTCGAATAGCCTGAACTCGTTGCGACTGGGCTTGTGAATTGCGACGCCGTGTGCTCATGAC
TGCTGTCGGGCAACTTGAATCTA---------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GCTTGTTAGTAGAGTACTCCCTCTTATTGGCTTATTGTTGGTAGCAGCCTACCCC
AGAGTTTAGATCGGTGTCTCCGTGTGTATGTGGTAGTCAGATCAAATCGATGCACTTTAGCTTGTTTTTT-GATGTATCA
ATTTTTTCGAA------GAATCAAATTAGTGCCTTGCTGAAGGCTTCGCTGGCGCTATCCATGTACTGTTATATGTGAAT
TTAGTCATGTGCGCGGTAACATTTCAAGTTTTCAACCATGAATTGGAGTTTTGTGAAGGACCTAATGTGGTGTGTT--AG
AAACTGAGAATTGGGGAATATGTCTCTTTAGGTGTTTCTGTAAGACTTCTTTGGAGTTTGGACAA---GGCAGCTGGTAC
TGTCTTTCTATATTTTTCACCTGGATGTTTGGACTGTGGAACGTCCAATTTTTGTTGGCTGCAAATTGCAGTGATGCGTG
CATGTTTGTCGGCCTTACTTTCATCACTCCCCTCTGTTTGTCGATGCTTGTATTTGAGTTTGCCGAGGGTTCCCGAGTCT
CTTAAAATTCACCTCACATGTCTACCGAAATGGTTTGTAGCCTTGTAGGAGTATGTCCCAGTTAGTTGTTCTGATAGCCA
AGAGGTGAAAGAAATGTGAGTTCTAACATGTGGTTCCTGCAAAACACTTTATAGATTCCATTCTG-----AGTACCATGG
TA-----GGCTTTAACATTTAAATTATTATGACGGGGATCTGGCAGGGTTTCTGCTGAAATATAATTTCTTTTTGTCTGT
TGGGTCTAGTCTATCCTGGATCTGCTACTAGTGTCTGCACACGCACACACACGCATGAACGGCATGTACCCATATTTCAC
TGTATTTTTCTGTAACTAGAATGTTTGTTTTTTCTAGTTGCTTCCGTCCTCTGAATCTCCCTGATACATTTTTACCATTG
TTTACACCTGACAGATAAAACCATCACCAAAGGGAAGCTGGTGGTAGATGTGTGGTACTTCTTTTTCCACGTCGATTCAG
AGACTCATGACTTGTGTGCTGGGACTCCCTGTCCCGCAACAGGCGAATTCGAACTAACCAGCGAACAGACCTTGCCATCT
TACACCCCGCCAGTAAGCATACCCGCAGTGCACACTCAATTTCGGTGCTGAAC-TTGTCTAGATATTTTCCCTTGTAGTG
CTTTGAGATAGACGAGAGGCTCAATAGGTCGCCGCAAGTAAGATCACATCCAGGCATCCTGACGTTTTGTGTTGCTGTGA
TGTGCTTCAGGGTTCTTACAGCCTCCAGATGAAGCTGATGGGAGACAAGAACGAGGAGCTGACCTGCATCTCGTTCGGGT
TCAGCATCGGGTTCGTCACGCCTGTCGCCGTTATGTGAACCAAATATGTGCCGCGAACCAAACACACCCTTGGACCTTGG
TTGCAGTTGCAAAGAGCTAGCACACCAC------GTATGTATGTACCCGCAGAACTG-------TCTGAATCACCCCGAG
TGAGAGAACCTGTGTTGGACTGAGCCGTTTTATTCAGAGTTGCTGCCAGTGCGTGTTTTTTGATTGTTGAATGTCAGGTT
TGTGTGTGTC-TACATGTGTGGTTGGACTCGGCGGTTGCTTTGGACGAATCATGGGCGTTTTGGGTGATTGGTTGGGGCC
GGTGCCGCATTCATCCTG---TGATGGCCCGACAAGGGCGTTCATCTGTGGAGGACCTGTCGTGGGTTGCTGCTAGCACG
CTGTCCACCCAGGCAGAGA---TAGCGCCGCACTGTCAAGCACCTAAATGCTTTGTCTATGTAGTACTCTGATGAAAGC-
--TCCTTTCTTTCTTCTGCTCTGATGATTTTGTTATATCTGATGGCTCATCGCTTAGTTATAATACGCACAAATACATGT
TAAGCATGAGTCCCCACCACTGGTGCATCAACGATCATATGCGACAAGAAAGGGCGCAATA-TTGGCTACGCAGTCGTCC
TCGTATGGTAGAGTACTAGCTAAATACCCGTGGGTCATAATGGAACAATAAATGAAATCTACGCAATATTCCACAACAGC
AAAAGGGTACACATAG-----ATACAAATGAAAGAATCGTTATAGTTTGGAACCATGCGTGTTGAGCGTGT---------
----CGGCAAACACGTCGTGAGAAACACCGACATCTTCCACACAT-TTCCTCCTCTGTCACACAAACCAATCAAACATTT
GAAAATTGTGGGGATCTTAAACTTGAGTAAATGATACTTCCTCCGTCCGAAAATACTTATCATCAAAATGAATAAAAGGG
GATGTATCTAGATGTATTTTAGTTCTAGATACATCCTTTGTTGTCCATTTTGATGACAAGTATTTTGGGACGGAGGGAGT
AGTAGCAATCTACTTTGAGCGTAGCATAACATGAAGAAACG
>chr5D_6
AAAAAT-----AGCTATTTAAAAAATCATGGTAAAAGATATATTTCAGGATAAATCTAGTAATATCAATTGAATATTGTT
CATAATGGATTTTTTCTATAATAATTGTCAAACATACCTATATTTGTTATGCACATATTATATTATGGA-----------
--------------------------------------------------------------------------------
---------------------------------TTAAAGGGGCCAACATACAATTATATAGTTAGACAAATAAATTGAGA
ATCAAATGATGGGCTTATTACAATTTGAAAGTGATTCACTCGAATGCACTTGCATCTGTCTTCTCAAGTCAAGGAAAAAC
TAGTATGGTTAACAATTTTTTTTTGCGAGTGAGTATGGTCAATATATGCTCTAACCATTGGGCATGACATCCAATTAATC
GTCAGATAGGATTCAAGCAATATACCAAAGGATGTTACCAAAA-AAATTGTATTCACCGCAACTCCTTCTCGAGACTCAA
GCTAAATC-CCAAATTTTAAAAAGTGCCAACCTATTGGAGAAAATCTTATATATGGGTCCTT--AAGGTATGAATTCGAA
ACTACCATAAGAATATGAATATTTTGAAGAGGTGACAAAAACAAATCTTTTTT---AGCTCATGGCATCAACATCTAAAA
CAGATACGGAGTATTATTTGTTTGCTTTGAGCATGTGAGAGAAACAGACAAGCTTGTCAAGTCAACTTTTTTAGGGAAAA
CCAAGTTTTTATTCATCATAAGCCACAATGTGTGGGATACAGTTCAGGTCGTGGGAATCACCAAACCAAAGTGACGTCCC
GGACCTAGTGACAAAGCAAACTTGGCTAAACCATGTGCCTCAAAGTTGACGGCACGACCTTCAAAAGTAAAATTACACTG
GAATAACAACGCTCTAACATTAATGTTGCTAATAATGGCCCCATAGGTACCACGATTGAAGTTCTTGATATCTTCCACCA
CTTGTTTCGAGTCTGAAGCAACAATGAATTGTTGAATATGGAGATCCTCCGCCAAATATATTGCTTCTCTACATGCGATA
TCTTCTAATGTGGCATGGTCATCAACTCCCTGAATGATTAGAGCGGAACTTCCGAGGAAATTGCCATCTCTATCTCGACA
CACCGCAGCTACTGAGCCTCCTCTTCCTTGTCAGACGCCAGCGTCCACGTGAATCTTTGTGAAGCCCTGAGGGGGAGCTC
GTGATCGTTGGTTGACGGTTTGTGGAACCACCGATGATGGTTGTTTATCTTTGATTATATCGAGCTCAACAATAAACCTC
GTGACGGAGTGAGTTCCTTGAGGGCTCTGGAAGACACCTTCTGAATCACCTTGCGTCTAGCCGACCAAATCGCCCAAAGG
GTGACTGATAGTTTCATAAACAAATCATGTGATAATGAATCCCTGAGTGTAAACAGCCAATGCTTTGCGTTCGGTTCAGT
GGTTGTTGCTATCGTTTCAGCCAACTCGTTGTCTATCAATGCCCACGTGCATCTTGAGACTGTGCATTCGACTAGTGAGT
GTTTCCAAGAATCCTCCATCCCGCAGAAACCGCGTGCACTCGTATCAGTCATGTTTTTGCGCGCTCTAATGTCATTTGTC
GAAATTGATTGTCGGGCGAGTCTCCATAAGAACATCCGGATCTTCGCCGGTACTTGTGTCTTCCACGCACCCTTCCAACT
ACCCTCCTCCTTCCGGATCTTCGCCCGTACTTGTGTCTTCCACATACCCTTCCAACTACCCTCCTCCTTCGCCGAGCTAG
AGGAGTCGGCCAAACCTTCGAGCTAGGCGGATCCTATTTAGCGCTTCAGCGCCCGTTGGCAAACGACCGCCTAAAGGCGC
TTCTAATTGCGCTCGGCCCATCTTGCCATTCTTTTTTGTTATCTAAACCAAAAAAATGAGGAGCGCGCTTGGAAGGACTG
GTCTAGGTGTCGCTGCACTAACCACCACACATAGGTACATCTAAAAAAAACCACACATAGGTCATCTCACGTGATCAGTT
CCCCCTTCTCCCCTCTTTACTTCTACGTCATTTTTTTCTTTTTTCTTTTTTATTTGGAACGATTTTGTTTGGTTTTTTTA
TTCTTTGCTAAATTGAATGAACTTTTTTATAAATTTCTGAACTTTTTTCAAAACCGATGAACTCTTATCGAATTTGATGA
ACTTTTTTTTGAATGCGATAAACTCTATTTTTCTAAATCAATGAACTTTTTTTTGTACTGGATGATCGAAGGCCTTAGTT
GGGCTTAGTTGTCTAGTGGTGGTTCGTAAAGTCAACTGAAGGCCTCCGCCCGGTCCAAACTAAGCCCAACCCAGTGCACG
CCTAATCAGGCCCACACACATAAATGTCTCTCTCTCTATTGACCGTGTCCCACTTCCTCAACGACCCGA-----------
----------------------------------------CTCGTGTCCACCTGCTCCGTCTAGTCGCGACACCCGCACA
GCTCTGGT----TCGCAGCGATGGCGAGCCACCGCCGCCTCCGCGACCTGCTCCTCCTCGCCGCGGCGCTCCTGCTCTCC
GCCTCCTGCGCCGCCGCCGCCAACTTCGAGTACTGCAGTAAGTGCTCCGAACTCTCCTTTCTCCGCTAAACCATCCCCGT
TTTGACTCTCGAGATTCC-GCGGATTGTGTATGCGATGCGAGCTTCTATTGGTGCTTGGTTCCGCAGATAAGGGGCGCCA
CTATCCGGTGAAGGTGAGCGGCGTCGAGATCGTCCCCGACCCCGTCGTGCGCGGCCAGCCCGCCACCTTCAAGATCTCCG
CCTCCACCGGTAAGATTTCGTCGAATAGCCTGAACTCCTTGCGATCTCGCTTGTGAATTGTGACGCGGTGTGCTCATGAC
TGCTGTCGAGCAACTTGAATCTA---------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GCTTG--------------------------------------------------
-----TTAGATCGGTGGCTCCGTGTGTATGTAGTAGTCAGATCAAATCGATGCACTTTTGCTTGTTTTTTTGAGGTATAA
ATTTTTTCGAGGAAGAGGAATCAAACTAGTGCCCTGCTGAAGGTCTCGCTGGCGCTATCCATGTACTGTTACATGTGAAT
T-AGTCACGTGCGCGGTAACATTTCAA--------CCATGAATTGG------------GGCCTACCATGGTGTGTTAGAG
AAACTGAGAATTGGGGAATATGTCTCTTTATGTGTTTCTGTAAGACTGCTTTGGAGTTTGGACAAAAAGGCAGCTGGTAC
TGCCATTCTATTTGCACCTG--GGATGTTTGGATTGTGGAACATCCAATATTCGTTGGACTCAAATTGCAGTAATGCGTG
CATGTTTATTGGCCTTACTTTCATGACTTCCCTCTGTTTGTCGGTGCTTGTATGTGAGTTTGCCGAGGGTTCCCGAGTCT
CCTAAAATTCACCACACATGTCTACCGAAATGGTTTGTAGT--------AGTATGTCCCAGTTAATTGTTCTGATAGCCA
AGAGGTGAAGGAAATGTGAGTTCTAACATGTGGTTCCTGCAAAACACTTTATAGATTCCATTTCGTAGTTAGTACCATGG
TCGCTAGGGCTTTAATATTGAAATTGTTATGATGTGGATCTGGCAGGGTTTCTGCTGAAATATAGATTCTTTTTATCTGT
TGGGTCTAGTCT-TCCTAGATCTGCTACTAGTGTCTGCACACGCACACACACAC-------GCATGCACCCATATTTCAC
AGTATTTTTCTGTAACTAGAATGTTTTTTTTTTCTAGTTGCTTCCTTCCTCTGAATCTCCCTGATACATTTTTACTGCTG
TTTACACCTGACAGATAAAACCATCACCAAAGGGAAGCTGGTGGTAGATGTGTGGTACTTCTTTTTACACGTCGATTCAG
AGACTCATGACTTGTGTGCTGGGACTCCCTGTCCCGCAACGGGCAAATTCGTACTAGCCAGCGAACAGACTTTGCCATCT
TACACCCCACCAGTAAGCATACCCGCAGTGCACATTCAGTTCCGGTGCCGAACTTTGTCTAGATATTTTCCCTTGTAGTG
CTTGT-GACAGACAAGGGGCTCAATAGGTCGCTGCAAGTAACATCACATCCAGACATCCTGACGTTTTGTGTTGTTGTGA
TGTGCTTCAGGGTTCTTACAGTCTCCAGATGAAGCTGCTGGGGGACAAGAACGAGGAGCTGACCTGCATCTCGTTCGGGT
TCAGCATCGGGTTCGTCGCGCCTGTCGCCATTATGTGACCCAAATATGTGCCGCGAACCAAACGCAC-------CCTTGG
TTGCAGTTGCAAAGAGCTAGCACACCAC------GTATGAATGTACCTGCAGAACTCTCTGAAATCTGAATCACCCCGGG
TGGGAGAGCATGTGTTGGACTGAGCCGTTTTAT------------------CGTTTGTTCTGAGTGTCGAATGTCGGTTG
TGTGTGT--TTTACATGTGTAGTTTGTCTCGGCGGTTGCTTTCGACGAATCATGGGCGTTTTGGGTGATTAGTTGGGGCC
GGTGCCGCATTCATCCTG---TGATGGCCCGACAAGGGCGTTCATCCGTGGAGGACCTGTCGTGGGTTGCTGCTAGCACG
CTGTCGTGGGTTGCT-----------GCCGCACTGTCAAGCACCTAAATGCCTTTGTCCAT--GTACTCTGATGAAAGC-
--TCCTT--TTTCTTTTGCTTTGATAATTTTGTTATATCTGGTGACTCGGCGCTTAGTTATAATACGCACAAATACATGT
TAAGCGTGTGTCCCT---ACCGGAGCATCAACACTCGTATGCGACAAGAAAGGGCGCGGCGTTTGGCTATGCAGTTGTCC
TCCTATG--------CTAGCTAAATACCCGTGCGTCATAAC-GAACAATAAATGAAATCTACGCAATATTCCA-AACAGC
AAAAGGGTAATACATACATAAATACAAATGAAAGAATCATTATAGTTTGGAACCATGCGTGTTGAGAGCGTGACTCTCGT
GTGACGTCAAATACGTCGTGAGAAACACCGACATCTTCCACATGTGTTCCTCCTCTGT----------------------
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>chr5A_951
CCTGCCG-------------------------------------------------------------------------
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----------------------------------------------------------GTCTAGTCGCCACA-CCGCAGA
GCTTTGGT----TCGCAGCGATGGCGACCGACCGCCGCCTCCGCGACCTGCTCCTCCTCGCCGCGGCGCTCCTGCTCTCC
GCCTCCTGCGCCGCCGCCGCCGACTTCGAGTACTGCAGTGAGTGCTCCGAGCTCTCCTTTCGCGGCTAAATCGTCCCCGT
TTTGACTTTTGAGATTCC-GCGGATTGTGTATGCGATGCGAGCTTCTGTTGGTGTTTGGTTCCGCAGAAAAGGGGCGCCA
CTATCCGGTGAAGGTGAGCGGCGTGGAGATCGTCCCCGACCCCGTCGTGCGCGGCGAGCCCGCCACCTTCAAGATCTCCG
CCTCCACCGGTAAGATTTCGTCGAATAGCCTGAACTCCTTGCGATTTGGCTTGTGAATTGTGGCGCGGTGTGCTCATGAC
TGCTGTCGGCCAACTTGAATCTACTCCCTCGGTTCCTAAATATTTGTCTTTCTAGACATTTCAAATGACTAGTACATACG
GATGTATGTAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTCCGTATGTAGTCACTTGTTGAAATGCCTAGAAAGA
CAAGTATTTAGAAACGGAGGGAGTAGCTTGTTAGTAGAGTACTCCTTGTTA-TGGCTTATTGTTGGTAGCAGCCTACTCC
AGAGTTTAGATCGGTGTCTCCGTGTGTATGTGGTAGTCAGATCAAATCGATGCACTTTTGCTTGTTTTTT-GATGTGTCA
ATTTTTTCGAGC------AATCAAATTAGTGCCCTGCTGAAGGTTTGGCTGGCCCTATCCATGTACTGTTATATGTGAAT
T-AGTCATGTCCGCGGTAACATTTCAAGTTTTCAACC--GAATTGGAGTTTTGTGAAGGACCTAATGTGGTGTGTT--AG
GAACTGAGATTTGGGGAATATGTCTCTTTAGGTGTTTTTGTAAGACTTCTTTGGAGTTTGGACAA---GGCAGCTGTTAC
TGTCTTTCTATATTTTGCACCTGCATGTTTGGATTGTGGAACGTCCAATATTTGTTGGCCGCAAATTGCAGTAATGCGTG
CATGTTTATCGGCCTTACTTTCACGACTTCCCTGTGTTTGTCGATGCTTGTATTTGAGTTTGCCAAGGCTTCCTGAGTCT
CTTAAAATTCATCTGACATGTCAACCGAAATGGT--------TTGTAGGAGTATGTCCCAGTTAGTTGTTCTGATAGCCA
ATAGGTGAAAGAAATGTGAGTTGTAACATGTGTTTCCTGCAAAACACTTTATATATTCCACTTCATAGTTAGTACCATGG
TCGCTAGGGCTTTAATATTGAAATTTTTGTGATGTGGATCTGGCAGGGTTTCTGCTGAAATATAGATTCTTTTTGTCTGT
TGGGCCTAGTCTATCGTGGATCTGCTACTAGTGTCTGCACACGCACACACACGCATGAGCGGCATGCACCCATATTTCAC
AGTATTTTTCTGTAACTAGAATG-TTTTTTTTTCTAGTTGCTTCCTTGCTCTGAATCTCCCTGATACATTTTTACTATTG
TTTACACCTGGCAGATAAAACCATCACCAAAGGGAAGCTGGTGGTAGATGTGTGGTACTTCTTTTTCCACGTCGATTCAG
AGACTCACGACTTGTGTGCTGGGACTCCCTGTCCCGCAACGGGCGAATTCGTACTAGCCAGCGAACAGACTTTGCCATCT
TACACCCCACCAGTAAGCATACCCGCAGTGCACATTCAGTTTCGGTGCCGAACT-TGTCTAGATATTTTCCCTTGTAGTG
CTTGT-GACAGACAAGGGGCTCAATAGGCCGCTGCAAGTAAGATCACATCTAGACATCCTGACGTTTTGTGTTGCTGTGA
TGTGCTTCAGGGTTCTTACAGTCTCCAGATGAAGCTGCTGGGAGACAAGAACGAGGAGCTGACCTGCATCTTGTTCGGGT
TCAGCATCGGGTTCGTCGCACCTGTCGCCATTATGTGAACCAAATATGTGCCGCGACCCAAACACAC-------CCTTGG
TTGCAGTTGCAAAGAGCCACCATGGTCCACGGATGTATGTATGTACCTGCAGAACTCTCTAAAATCTGAATCACCCCGAG
TGGGAGAGCATGTGTTGGACTGAGCCGTTTTATTCAGAGTTGCTGCCAGTGCGTGTTTTCTGAGTGTTGAATGTCGCTTG
TGTGTGTGTTTTACATGTGTGGTTGGGCTCCGCGGTTGCTTTCGACGAACCATGGGCATTTTGGGTGATTGGTTGGGGCC
GGTGCCGCATTCATCCTGTTGTGATGGCCCGACAAGGGCGTCCATCCGTGGAGGACCTGTCGTGGGTTGCTGCTAGCACG
CTGTCCACCGAGGCAGAGAAGATAGCGTCGCACTGTGAAGCACCTAAATGCTTTGTCTATGTAGTACTCTGATGAAAGCG
GCTCCTT--TTTCTTCTGCTCCGATGATTTTGTTATCTCTGATGACTCAGCGCTTAGTTATAATACGCACAAATAGATGT
TAAGCATGTGTCCCT---ACTGGAGCATCAACACTTGTATGCGACAAGAAAGGGTGCGGCGTT-GGCTATGCAGTTGTCC
TCCTATG--------GTAGCTAAATACCCGTGCGTCATAACGGAACAATAAATGAAATCTACGCGATATTCCACAACAGC
AAAAGGGTAATACATACATAAATACAAATGAAAGAATCGCTATAGTTTGGAACCATGCGTGTTGAGAGCGTGACTCTCGT
GTGACGTCAAATAAGTCGTGAGAAACACCGACATCTTCCACATGT-TTCCTCCTTACAACCAAGCAAACA-CAAATCATT
CAAACTTGTGGGAATCTTAAAGTTGATAAA--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>SNPs
SSS--SSSSSS--------------S-------------S-----------S----------------------------
-----------S---------------------------------------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---S----S------S----------------SS---
-------S---------------------S---------------------------S----SSS---------------
--------------SS-----------S---S-------S--------S--------------------------S----
S------------------------S-----------S-----S-----S---------S---------SS---------
----S-SSS---------S-----------S---S-----S---------S---SS------SS----------S-----
-----------S-------------------SSSS----S---S-SS--SS--SSS--------S---------------
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-----------------------------------------------S-----------------------S-------S
-SS-SSSSSSSSSSSS-SSSSSSSS--SSSSSS-SSSSSSSSS-------SS-SS-SS-SS-S-SS--SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
S--SSSSSSSSS--------------S--S---S-----S---------------S------------------------
------------------------------------------------------------S-------------------
--------S---------S-----------S-------------------------------------------------
------------------S--S----------------------------------------------------------
-------------------------------------S------S-S-------------S-----S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S-S---S-------------------------S--
----------------------------------------------------------S---------------------
----------S----------------------S---------S------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S----------------S---------------S---------S------------S-------
-------S----------------S---S---------------------------------------------------
----------------------------------------SS--------------------------------------
--------------------------------------------------------------SS----------------
-S-------------S---S-----S------S-S-----------------------------SS--------------
----------------------------------------------------------S-------S-------------
S-------------------------S------------------S-----------------------------S----
--------------------------------------------------------------------------------
----------------------------------------S----------S----S-------------S---------
--------S-------------------------S---S---------S-------------------------------
---SSS--S----S--S---------------S--------------------S--------------------------
---------------------S---------------S------------------------------------------
-----------------S-----------S-------------------------------------SSSSSSS------
-----------------------------------------------S--------S-----------------------
--S----S-S-------------------------------------------------S---S-----------S-S-S
---------S----------------S---------------S-------------------------------------
----------------------------------------------S---------------------------------
---------S----------------------------------------------------------------------
-------SS-----------------------------------S----S------------------------------
--------S-----SSSS-----S--------SS--S--------------------SSSS--------S-----S----
--S----SSSSSSSS-----------------S-------S---------------------------------------
---------SSSSSSS--------------------------------------------------S-S-----------
------S----S------------------------------SS--------------SS--SSS-SSS-S----SSS--
S---S-------S--------S----SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_440
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--------------------TTTTGCGGGTGGGTATGGTT----------------------------------------
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>reverse_3629
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----------------------------CCCCTCTGTTTGTCGATGCT--------------------------------
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>forward_2941
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CGACTGGGCTTGTGAATTGC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>reverse_4334
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GAGAGGCTCAATAGGTCGCC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>forward_4249
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CCTTGCCATCT
TACACCCCG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>reverse_5508
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GGACGGAGGGAGT
AGTAGCA----------------------------------
