>input_sequence_44060
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---------------------------------------GCTTATAAACGCAATTAGTGCACATACGGGGAGCATCAGAC
TGTCTGAGTGCAAGCATGAGACTCCAAATCTGTTCTCTCGCCGTCCTCCTGCTCCCTCTCCTTCTCGCCTCAGCCACCGA
TTTCGATTTCTTCTACCATGTCCAGCAGGTAAACTAACTAATCAT-TTATGAACTTTTGATTGCTCTATCGTGTGTGTGT
G---------TCTGAACTGTGGCTGACCGTTCCTGAATGCAGTGGCCCGGCTCGTTCTGCGACACGACGGGCGGCTGCTG
CTTCCCGGGCAACGTGAAGCCGGCGGCGGACTTTGGCATCCACGGCCTGTGGCCCAACTACGCCGCGTGCCGCCCCGCCG
GCGATACCAACAGGACCAGGTGCTGGCCGGACTTCTGCAACGCCGGCGACACCTTCAACCCGTCGCTGGTGCGTATAAAT
AACCGCATGCCACTCTTCATCTCCAGAAGTTCCCTCTGTAATCTGTCGGCGAATGCGTTGCAGATCAGCGACCTGAGGAG
CGACATGGACCGGAACTGGGGGACGCTGTCGTGCAGGAGCAACGACAGCACGGCCTTCTGGAGCCACGAGTGGAGCAGGC
ACGGCACCTGCTCCAACATGGACCAGCACGCCTACTTCCTCGCGGCGCTCCGGTACAAGGCCCGCTTCAACCTCACCCGC
ATCCTCCTCGACGCCGGGATCGCGCCGTCGGAGGAGAGGACGTACTGCGTGGGCAGCATCCGGGACGCCATCGGGGAGGC
GACGGGGTCGGCGCCTGGCATCGAGTGCAACCGGAACGCGCGCAACGAGACGCAGCTGTACCAGGTGTACCAGTGCGTCG
ACCTCGCCGGCACCGGCCCCGTCCCCTGCCCGGCGGTGCCGATGCAGAGCCGCTGCACCGACCAGGTCAAGTTCCCCGCG
TTCTAGCTGGAGCCCAGGGCATGTGACGCGGTAACCTTTCAATGCCGGCCGGCCGGCCGGCGCTGCACAATGTTTGACGG
GGCGAACGGCAGCGCGCGGTCGTTTTCACTGTAGTCTTACTAAGTCTCGGTTGATGCTATATCACGAGATCTTGCATTGA
GATCTGTATAATTTTTTCGACTGAGATATAGCTACACCCTTTAACTATTTTGTCTTTCGCTTAGATTCCAAAAGCTCGCC
ATACATTGTTCCCGTTCATTCGCGGTAACAGGTAATTAAGTATTTTTTTGATAAGGGATGAATTTTATATTGATTTAATA
TGAAGCATCAAGAGGACGCACCTACTACATACTCCCTCGTTTTTAAATAGAGAAAAGTATACTTTCGAGTCAATCACATC
GGTGGTGCTTGAACTTGATGCAAACGGTCACTTTGATGCTAGAACTTACGGCATACATCAAACTCGTGTAACAACTTGGC
TCGTGCGTGCAACACGGACCCCGGCTTCGCACACGCCGAGTTCAGTACAAGGATTTGGATCCCGAGCAGACATTTTTTCT
CGCGGGGCACCGAAAACGAAATACCGTAAAAATTTCGTACGGAATTTGAATTTCAAATTTGGATTTGAATTCTTTTGCCT
TACTATATGTTGAAAATGAAAACTAATTCACCAGCAAACACATTGTGGCGCGTTGGTTAGCGTTATCTATGCTACTAGTT
GCCTTCGGTTGGAGGGTTCAAATCCCGCCGAGGTCATATTTTTTTGCCGTGGAGGGTTGGGTGCCACTGCTCGGCCTTGG
ACAACACGCGAGAGTGCAAGCCAGATGTTCGATGAAATGGCTCA------------------------------------
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>chr2A_1_TraesCS2A01G157300
AATTGTATTTGTTAACGGAGGGGATATAAAGGTTCATCAGAAGTACAAAAAACCAGAAACATGATAAAGAAAT----ACA
TTAAGATCTCTGAACCACCATCGAAACTGTCATCGTTAGAATGAGCTATTGACACTGTCACCGCTTCTATATCAGAGCCG
ACTTGACCTTGTCGATGACAGTCGAAAAGTCATTGTGTACATGTCCCTAAGGACCATCGCCCCAGAGCTATACTCGTCGC
CATAGAACCCTTAAATTGATCCAAGAAACATGACATCAAATTTCACCGTGGGAATGTACGGTTGGAAACCCTAACTTTAC
TGCCTCGAAGAGCCGGCAGGAAGATACATTGAAGATGTGTCTAATCAGTACCAACAGACAAACTTGAGGAGGATAGGAGC
ACGGAAGACCGACTCGACAATGAAGCGCCGCCATCAGCCCGATCGCCATGTAGAGGAGAGGCGGATCCACCAGCTCGCTT
GTGGAGATCGCACAGAAAAAACATTTTCTTTCCGTATTGTTGTCAAGAAATTCGAGTGCAAAACCAACCCTACCGACACT
ACAATCCAGAGATCCGCCTGTCTAATTAGTAACTACTACTACATCCATTCTGCAGGGTTCTACTATATTGCTGCCAAACT
GTAAAGGGACCAATGATCGTAGCCTCATAACAAAGATCTGGCTCTTTCATCAAACTCTGAACTTTGTCTTAATTACTCAA
TGAACCAGATCAATTATGGCCCATGGTCTAAAAGTATTTTGGAAGTGCCAGCTTTTGGTCCTCGTGAATCTCGTGCCCGT
ATGGTCGAGTCGGGATCCTGCATGCG------------------------------------------------------
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---------CTGCAGCGCTCGTTCTGAACTTCTGATCCCGCATAGGAT--TAATTAGGTGTTGCC--------GTATGAA
CATTAGTCCAAACAAATCTTTTTATACTACTTTAGG--ATCGCACATTTCGGTCGGTGCCCTGCCCAATTCGCCATGTCG
TTACGGTCCTAATATATGCGATTGTAGTCCTCACCCTGTGCTTATAAACGCAATTAGTGCACATACGGGGAGCATCAGAC
TGTCTGAGTGCAAGCATGAGACTCCAAATCTGTTCTCTCGCCGTCCTCCTGCTCCCTCTCCTTCTCGCCTCAGCCACCGA
TTTCGATTTCTTCTACCATGTCCAGCAGGTAAACTAACTAATCAT-TTATGAACTTTTGATTGCTCTATCGTGTGTGTGT
G---------TCTGAACTGTGGCTGACCGTTCCTGAATGCAGTGGCCCGGCTCGTTCTGCGACACGACGGGCGGCTGCTG
CTTCCCGGGCAACGTGAAGCCGGCGGCGGACTTTGGCATCCACGGCCTGTGGCCCAACTACGCCGCGTGCCGCCCCGCCG
GCGATACCAACAGGACCAGGTGCTGGCCGGACTTCTGCAACGCCGGCGACACCTTCAACCCGTCGCTGGTGCGTATAAAT
AACCGCATGCCACTCTTCATCTCCAGAAGTTCCCTCTGTAATCTGTCGGCGAATGCGTTGCAGATCAGCGACCTGAGGAG
CGACATGGACCGGAACTGGGGGACGCTGTCGTGCAGGAGCAACGACAGCACGGCCTTCTGGAGCCACGAGTGGAGCAGGC
ACGGCACCTGCTCCAACATGGACCAGCACGCCTACTTCCTCGCGGCGCTCCGGTACAAGGCCCGCTTCAACCTCACCCGC
ATCCTCCTCGACGCCGGGATCGCGCCGTCGGAGGAGAGGACGTACTGCGTGGGCAGCATCCGGGACGCCATCGGGGAGGC
GACGGGGTCGGCGCCTGGCATCGAGTGCAACCGGAACGCGCGCAACGAGACGCAGCTGTACCAGGTGTACCAGTGCGTCG
ACCTCGCCGGCACCGGCCCCGTCCCCTGCCCGGCGGTGCCGATGCAGAGCCGCTGCACCGACCAGGTCAAGTTCCCCGCG
TTCTAGCTGGAGCCCAGGGCATGTGACGCGGTAACCTTTCAATGCCGGCCGGCCGGCCGGCGCTGCACAATGTTTGACGG
GGCGAACGGCAGCGCGCGGTCGTTTTCACTGTAGTCTTACTAAGTCTCGGTTGATGCTATATCACGAGATCTTGCATTGA
GATCTGTATAATTTTTTCGACTGAGATATAGCTACACCCTTTAACTATTTTGTCTTTCGCTTAGATTCCAAAAGCTCGCC
ATACATTGTTCCCGTTCATTCGCGGTAACAGGTAATTAAGTATTTTTTTGATAAGGGATGAATTTTATATTGATTTAATA
TGAAGCATCAAGAGGACGCACCTACTACATACTCCCTCGTTTTTAAATAGAGAAAAGTATACTTTCGAGTCAATCACATC
GGTGGTGCTTGAACTTGATGCAAACGGTCACTTTGATGCTAGAACTTACGGCATACATCAAACTCGTGTAACAACTTGGC
TCGTGCGTGCAACACGGACCCCGGCTTCGCACACGCCGAGTTCAGTACAAGGATTTGGATCCCGAGCAGACATTTTTTCT
CGCGGGGCACCGAAAACGAAATACCGTAAAAATTTCGTACGGAATTTGAATTTCAAATTTGGATTTGAATTCTTTTGCCT
TACTATATGTTGAAAATGAAAACTAATTCACCAGCAAACACATTGTGGCGCGTTGGTTAGCGTTATCTATGCTACTAGTT
GCCTTCGGTTGGAGGGTTCAAATCCCGCCGAGGTCATATTTTTTTGCCGTGGAGGGTTGGGTGCCACTGCTCGGCCTTGG
ACAACACGCGAGAGTGCAAGCCAGATGTTCGATGAAATGGCTCAATAAAACAAGAGAAATACCGCCGCGTGAACAAAGAC
CAGTCAAACCCGTACTAAGTCAGCAACAATACCGGGTCAGCCGAGACAAGAGACTGAAGTTCTCTGGTTTTAAAAGTCAA
TGGTGCAAGTTGACGGATAAAATTTAGATTCCGCAAAGAGTTGAGGGACTAAAAGTATATTTTTCTCTTATAAATATAAG
AGCAACTCTAACGCGGCGACCCAAATGGAAACACGTTTTGTCCGCTTTTTGTCCGTTTGGATCGGTCAGGCGAACATGTG
CGTCCGCATTTTTATATGGGTCGGCTTGACCGCCCAACGAGAGACGGGCCCAAATTTGTCGGCATAGAAAAAAACAAGTC
ATAGAAATAAACATAATTAAACACTAAAGTGGCCGGTCAACCGCCGGTCAAAGCCCACTTAAATCTAATGTGGCACCCCA
GCTCAGAG-AGACCAGAACACCCTGTATTCCAGCCCAGAGATC-----AAGTCTTCTGAAATACGGCATTACTTAGCATA
GAACAAATCAGCTCTTTATTACAATCGATAT-GGATACAAAGGTTACGATATAACAAGGAATTACACCGGCACAGCGACA
CTACGCTTGACACGGTTGCTCTATGCAAGCAGCAGAACAACTCGAAA------------------CTGCGGAACA-----
------------G-CGACGACGGTGATGGACTCCACTCCGCAGGGACTCTGGCTGGGACACGGT--CTAGCTAGCACGAA
CGGTGACCTC----GACAAGCAATCAATCA----CGACATCACCTACAATCTGGCATGACACGCCAGGTCAGTACATTGA
ATGTACTTGCAAGCTCACAACAACC-AA-AGCAATCAAGACAAACAACAGCATGGCATTTACAGGTTA----------GA
ACATGATACCACTAGAACAACATAAGATGAGCATGGCATAAATATATTGAACATAACACATCTAGCATCATATGAAATGA
-----TCATAGCAATGTCACTCATGATATGCACAA-GATGATTCTAGCCTGCGGCATGCTTATCATGATTTACTT
>chr2D_3
--TTGTATTTGTTAACAGAGGAGATATAAAGGTTTATCAGAAGTACAAAACACCACAAACATTAAGATCTCTGAACCACA
TTAAGATCTCTGAACCATCACCGAAACTGCCTCCGTTAGAACGAGCTATTGACGATGTCGCCGCTTCTATATCAGAGCTG
GCCTGACGTTGTCGATGACAATCGAAAAGTCATTGTCCACATGTCCCTAAGGACCATCACCCCAGAGCCATACTCATCGC
CATAGAACCCTTAAATCGATCCAAGAAGCATGACATCAAATTTCACGATGGGAATGCACGGTTGGAAACCCTAACTTTAC
TGCCTCGAAGAGCCGGCAGGAAGATACGTCGGAGCTCTGTCTAATCAGTCCCAACAGACAAACTTGAAGAGGATAGGAGC
ATGGAAGACCGACTCGATAATGAAGCGCTGCCATCAGTCCGATCGCCAT--AGAGGAGAGGCGGATCCACGAGCACGCTC
GTGGAGATCGCGGAGAG----CATTTTCTTTCTGTATTGTTGTCAAGAAATTCCAGTGCAAGACCAACCCTACCGACACT
GCAATCCAGAGATTTGCTTGTCTAACTA---------ACTACATCCATGCCGCAGGGTTCTACAATATTGCTGCCAAACT
TTAAAGGGACCAATGATCGTAGGCTCATAACACAGATCAGGCTCTTTCATCAAACTCTGAACCTTGTCTTGATTTCTCAA
TAAACCAGATCAATTATGGCCCATGGTCTAAAAGTATTTTGGAAGTGCCAGCTTTTGGTGCTTGTG--TCTCATGCCCAT
ATGGTCGGGTCGGGATCATGCATGCGCTGCAGTGGCCGATCCAGGAATTCAACTTTGGGTGTTCAAAAAAAAAATTCACC
CTAACAAAGAAGTGCATTTGTCCACGGCAACACAAATTGTTCACAATAGGATCAATATCTTGGGAGAAGATTTTTTATTT
ATTTTACAAAGAGCTATATATCTCTAAAACCAAAGATAATGAAATTTCAGATTGGAACTTTGGACTGAGCTTTTTTAGGG
GTATTTAACTGTGCTTAGAGCATCTACAACCGGGTATCCTAAACCCGCATCAAACGTCCGGGCACATCCGCCACGTGGGA
CTGACGGTATTTAAGCCAATCGCCGGCACCGAAACCCTACCCATCCACACTTCCGCCCTTTTGTCCGCCGACACCGCTAC
TTTCCACTCGCCGTCCATATCCTGGACATCTCCGACGAGAGGCATAGTTAGCTAGTGTGTGCGTAGCATGTAGGATTTCT
TTTGCATGGTTTGCATGGTCACTGTCCGCGGAGACGCCCGGTCATGTCCGCGGATGTTTGAGGGGTCGGATTTACGTCCA
GTTGTAGATGCTCTTAATATCTCTCGTGCGTGAGGGCAGAGGTGGCTCGTTGCTGCTCTTGGGCTACTGGTTAGTTAGGT
CTGGTTAGTGGCCGATGGATTAATATTGGTCGGTTTGCCACATGAGAGCTGCTGTGTAGTCTCTCAAAGTATGCCACTCT
GTCTTTTTTGCCATATATATCTATAAATAGGAATTTTGTGCAGCAAATTTTGGGTGTACAGTACACCCTTGACAAATACT
GGATCCGCCCTGCAGGGCTCGTTCTGAACTTCTGATCCCGCGTAGGATCTTAATTAGGTGATGCCGTATGATTGTATGAA
CATTAGTCCAAACTAATCTTTCTATACTGTATTCAGGAATCGCACTTTTCTGTCCGTGCCCTGCTCA-----CCATGTCG
TTACGGTCCTAATAT--GCGATTGTAATCCTCACCC--------TAAACGCAGTTAGTGCAAAGACTGGAAGCCTCAGAC
TGTCTGAGAGCAAGCATGAGACTCCATTACTGTTCGCTCACCGTCGTCCTGCTCCCTTTCCTCCTCGCCTCAGCCACCGA
TTTCGATTTCTTCTACCATGTCCAGAAGGTAAACTGACTAAATTAATTCTGAACATTTTATTGCTCGATCGTGGTTGTGT
GTGTCTGAACTCTGAACAAAGGCTGACCGTTCCTGAATGCAGTGGCCCGGCTCGTTCTGCGACACGACGGGCGGCTGCTG
CTTCCCCGGCAACGTGAAGCCGGCGGCGGACTTCGGCATCCACGGCCTGTGGCCCAACTACGCCGCGTGCCGCCCCGCCG
GCGAGACCAACAGGACCAGGTGCTGGCCGGACTTCTGCAACGCCACCAACACCTTCGCCCCGTCGCTGGTGCGTATG---
-ACCGCATGCCACTCTTCATCTCCAGAAGTTCCCTCTGTAATCTGTCGGTGAATGCGTTGCAGATCAGCGACCTGAAGAG
CGACATGGACCGGAACTGGGGGACGCTGTCGTGCAGGAGCAACGACAGCACGGCCTTCTGGAGCCACGAGTGGAGCAGGC
ACGGCACCTGCTCCAACATGGACCAGCACGCCTACTTCCTCGCGGCGCTCCGGTACAAGGCCCGCTTCAACCTCACCCGC
ATCCTCCTCGACTCCGGGATCGTGCCGTCGGAGGAGAGGACGTACTGCGTGGGCAGCATCCGGGACGCCATCGGGGAGGC
GACGGGGTCGGCGCCCGGCATCGAGTGCAACCGGAACGCCCGCAACGAGACGCAGCTGTACCAGGTGTACCAGTGCGTCG
ACCTCGCCGGCACCGGCCCCATCCCCTGCCCGGCGGTGCCGATGCAGGGCCGCTGCACCGACCAGGTCAAGTTCCCCGCG
TTCTAGCTGGAG-CCAGGGCATGTGACGCGGTAACCTTTCGTTGCCGGCCGGCGCTGCACTCGTTTCAGAGGG-------
-----ACGGCAGCGCGCGGTCATTTTCACTATAGTTTTGCAAGTCTTA-GTGGATGCTTATCCATGAGATCTCACATTGA
GATCTGTAT-----------------------------------------------------------------------
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>chr2D_3180
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--------------------------------------------------------------------TGTGGCACCCCA
GCTCAGAG-AGACCGAAAAACCCCGTATTCCAGCCCAGAGATC-----AAGTCTTATGGAATACGACATTGCTTGGCATA
GAACAAATCAGCTCTTTATTATAATCGATGT-GGATATAAGGGTTCCGATATAACAGGGAATTACATCGGCACGGCGACA
CTACGCCTGCCATGGTTGCTCTATGCAAGCAGTAGAACAACTCAAAGCCGCGGAATGACTACTAGCAGCGGAACA-----
------------A-CGACGACGGTGATGGACTCCACTCTACAGGGACTCTGGCTGGGACACGAT--CTAGCTAGCACGAA
CGGTGACCTC----GACAAGCAATCAATCA----CGGCATCACCTGCAATCTGGCATGACATGCCAGGTCAGTACATTGA
ATGTACTTGCAAGCTCACAACAACC-AA-AGCAATCAAGACAAACAACGGCATGACATTTACAGGTTAAAGCAATGATGA
ATATGATACCACTAGAACAACATAAGACGAGCATGGCATAAACATATAGAACATAACACATCTAGCATCATATGAGATGA
-----TCATGGCAATGTCACTCATGATATGCACAA-GATGATTCTAGCATGCAACATACTTATCATGATTCACTT
>chr4B_3180
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--------------------------------------------------------------------TGTGGCACCCCG
GCTCAGAG-AGACCGAAACACCCCGTATTCCAGCTCGAAGATC-----AAGTCTTCTGGAATACGGCACTGCTTGGCATA
GAACAAATTAACTCTTTATTACAATCGACAT-GGATACAAGGGTTCCTATATAACAGGGAGTTACATCGGCACGGCGACA
CTACGCGTGCCATGGTTGCTCTATGCAAGCAGCAGAACAACTTGAAG------------------CAGCGGAATGACTAC
TAGCAGCAGAACATCAATGATAGTGATGGAGTCCACTCTGCAGGGACTCTGGCTAGGACACGAT--CTAGCTAGCACGAA
CGGTGACCTC----GACAAGCAATCAATCA----TGGCATCACCTGCAATCTGGCATGACACGTCAGGTCAATACACTGA
ATGTACTTGCAAGCTCACAACAACC-AA-AGCAATCAAGACAAACAACAACATGGCATTTACAGGTTAAAGCAATGATGA
ACATGATACCACTAGAACAACATAAGATGAGCATGGCATAAACATATTGAATATAATACATCTAGCATCATATGAAATGA
-----TCATGGCAATGTCACTCATGATATGCACAA-GATGATTCTAGCATGCAGCATACTTATCATGATTTACTT
>chr6A_3180
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--------------------------------------------------------------------TGTGGCATCCCG
GCTCACAA-AGACCGCAACACCCTATATTCCAGCCCAAAGATC-----AAGTCTTCTGGAATACGACACTGCTTGGCATA
GAACAAATCAACTCTTTAATACAATCGATAT-GGATACAGGGGTTCCAATATAAAAAGGAATTAAATCGGCACGTCGACA
CTACACCTGCAAGGGTTGCTCTATGCAACCAGCAGAACAACTTGAAG------------------CAGCGGAACA-----
------------T-TGATGATGCCGATGGACTCCACTCCGCAGGGACTCTGGCTGGGACATGAT--CTAGCTAGCACGAA
TGGTAACCTC----GACAAGCAATCAATCA----CGGCATCACCTACAATCTGGCATGACACGCCAGGTCAGTACATTGA
ATGTACTTGCAACCTCACAACAACC-AAAAGCAATCAAGACAAACAACAACATGGCATTTATAGGTTAAA-CAATGATGA
GCATGATATCACTAGAACAACATCAGATGAGCATGGCATGAACATGTTGAACATAACACATCTAGCATCACATGGAATGA
-----TCATGGGAATGTTACTCATGATATGCACAA-GATGATATTAACATGCAGCATACTTAACATGAT------
>chr7B_3180
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--------------------------------------------------------------------TGTGGCACCCCG
GCTCAGAG-AGACTGGAACACCCTGTATTCCAACCCAAAGATC-----AAGTCTTCCGGAATACAGCACTGCTTGGCATA
GAACAAATCATCTCTTTATTACAATCGATAT-GGATGCAAGGGTTTCGATATAACACGGAATTACATCAGCACGGCGACA
CTACGCCTGCCATGGTTGCTCTACGCAACCAGCAGAACAACTCGAAG------------------TAGCGGAACA-----
------------T-CGACGACAGTGATTGGCTCGACTCCGCAGGGACTCTGGCTGGAACGCTTATCCTAGCTCACCAACG
AGGGATCCACGGCAAACAAACAAGCAGACA----CGATATGACCTGCAAACTGGCATGACACGCCAAGTCAGTACATTGA
ATGTACTTGCAAGCTCAGAACAACC-AA-AGCAATCAAGACAAACAACAACATGGCATTTACAGGTTAAAACAATGATTA
ACATGATACCACTAGAACA-CATAAGATGAGCATGGAATAAACATATTGAACATAACACATCTAGCATCAT-----ATGA
AATGATCATGGTAATGTCACTCATGATATGCACAA-GATGATTCTAGCATGCATCATACTTATCATGATTTACTT
>chr1D_3180
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--------------------------------------------------------------------TGTGGCACCCCG
GCTCAGAGGAAACCGGAACGCCCCGTATTCCAGCCCAGAGAT------AAGTCTTCTAGAATACGGCACTGC-TGGCATA
GAACAAATGAGCTCTTTAGTACAAATATACGGGGATACAAGGGTTCCGATATAATAGGAAATTACATCGGCCTGACGGCA
CTACGCCTGCCAAGGTTGCTCTATGCTAGCAGCAGAACAACTCGTAG------------------CAGCGGAATAACTCC
TAGTAGGAGAACAATGACGACGACGATGGACTCCATTCTGCAGGGACTCTGGCTTGAACATTTATCCTAGCTCCCAAACT
CAAGATCCTC----AACAAACAAGCAAGCAGACTAGGCATGACCTAGAAACTGGCATGACACGCCAGGTCAGTACATTGA
ATGTACTTGCAAGCTCACAACAACC-AGAGGCAATCAAGACAAACAACAACATGGCATTTACAGGTTAAA-CAAGCATGA
GCATGATACAACTAGAACAACAT-----------GGCATGTACAAGGTGAACATGATACCGCTAGAACATT-----ATCA
ACATGGCATGAACATATTACTCAAGACATGAACAATGATGGTACTAGCATGCAACATGCT---------------
>chr5B_3180
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--------------------------------------------------------------------TGTGGCACCCCG
GCTCAGAG-AGACCAGAACACCCCGCATTCAAGCCCAGAGATC-----AAGTCTTCTGGAATACGACACTGCTTGGCATG
GAAGAAATCAGCTTTTATTAC---------------------------AAATACTCGGGGAATATCTCAGCACGATGACA
CTACACATGCGTAGGTAGCTCTATGCTAGCAGCAGAACAACTCGAAG------------------CAGCGGGATAACTTC
TAGCAGCGGAACT-CGACGACAGCGGTGGACTCCACTCCACAGGGACTCTGGCTGGAACGCTTATCCTAGCTCGCAAACT
CGGGATCCTT----GACAAGCGAACAATCA----CGGCATGA--CGCAAACTGGCATGACACGCCAGGTGAGTACTTTGA
ATGTACTCGCAAGCTCACAGCAACCAAA-AGCAATCAAGACAAATAACAACATGGCATTTACAGGTTAAA-CAATGATGA
GCATGATACCACTAGAACAGTATAAGATGAGCATGGCATGAACATGTTGAACATAACACATCTAGCATCAT-----ATGA
-----GCATGGCAATGTCACTCATGATATGCACAT-GATGATACTAGC---------------------------
>chr5B_3180
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--------------------------------------------------------------------TGTGGCACCCCC
ACTCAGAG-AGACCAGAACACCCCGTATTCCAGCCTAGAGATC-----AAGTCTTCTGGAATACGGCACTGCTTGGCATG
GAACAAATCAACTTTTTATTACAAATACTCGGGG-TACAAAGGTTCGAGTATTACAATGGAATATCTCGGCATGATGATA
GTACGCTTGTGAAGGTAGCTCTATGCTAGCAGCAGAACAACTCAAAG------------------CAGCGGAATAACTTC
TAGCAGCGGAACA-GGATGACAACGATTGCCTCCACTCCGCAGGGACTCTGGCTGGAATGCTTATCCTAGCTCGCAAACT
CGGGATCATC----AACAAGCAAGCAATCA----CGA-----------------CATGACACGCCAGGTGAGTACTTTGA
ATGTACTCGCAAGCTCACAACAACC-AAAAGCAATCAAGACAAACACCAACATGGCATTTACAGGTG-AA-CAATGATGA
GCATGATACTACTAGAACAACATAAGATGAGCATGGCATGAACATGTTGAACATAACACATCTAGCATCAT-----ATGA
-----GCATGGCAATGTCACTCATGATACGCACAT-GATGATACTA-----------------------------
>chr5B_3180
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--------------------------------------------------------------------TGTGGCATCCCG
GCTCAGAG-AGACCGGAACACCCCGCATTCAAGCGCAGAGATC-----AAGTCTTCTGGAATACAGTAGTGCTTGGCATG
GAAGAAATCAGTTTTTATTAC---------------------------AAATACTCAGGGAATATCTCGACACAGCGACA
CTACGCCTGCAAAGGTAGCTCTATGCTAACAGCAGAACAACTCGAAG------------------TAGAGGGATAACTTC
TAGCAGCGGAAC-TCGACGACAGCGATGGACTCCACTCCGCAGGGACTCTGGCTGGAACGCTTATCCTAGCTCGCAAAAT
CGGGATCCTC----GACAAGCAAACAATCA----TGACATGA--TGCAAACTGGCATGACACGCCAGGTGAGTACTTTGA
ATGTACTCGCAAGCTCATAGCAACC-AAAAGCAATCAAGACAAATAACAACATGGCATTTACAGGTTAAA-CAATGATGA
GCTTGATACCACTAGAACAATATAAGATGAGCATGGCATGAACATGTTGAACATAACACATCTAGCATCAT-----ATGA
-----GCATGGCAATGTCACTCATGATATGCACAG-GATGATACTAGCATGAAGCAT------------------
>chr4D_3180
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--------------------------------------------------------------------TGTGGCACCCTG
GCTCAGAGGAAACCGGAACGGCCCGTATTCCAGCCAAGAGAC------AAGTCTTCTGGAATACGACATTGC-TAGCATA
GAACAAATCAACTCTTTATTACAAATACTCGGGGATACAAGGGTTCCGATATAACCAGGAATTACATTGGCATGGCGACG
CTACACCTGCCAAGGTTGCTCTATGCTAGCAGCAGAACATCTCATAG------------------CAGCGGAATAACTTC
TAGCAGCGGAACAACGACGATGGTGATGGACTCCACTCCGGAGGGACTCTGGCTGGAACACTTATCCTAGCTCGCCAAAA
AAGGATCCAC----GACAAACAAGTAAGTAGACAAAGCATGACCTGCAAACTGGCATGACACGCCAGGTTAGTACATTGA
ATGTACTTGCAAGCTCACAACAACC-AGGAGCAATCAAGACAAACAACAACATGGCATTTACAGGTTAAA-CAATGATGA
GCATGATACAACTAGAACAA-----------CATGGCATGTACAACTTGATCATGATACAACTAGAACAAG-----ATCA
ACACGTCATGAACATATTACTCAAGACATGAACAATGAGGATACTAGCATGCAACATGCT---------------
>chr3A_3182
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----------------------------------------------------------------------TGGCACCCTG
GCTCAGAG-AAACGAGAACACCCCATATTCCAGCCCATAGATCGAGAGAAGTCTTCTAGAATACGACACTTCTTAGCATA
GAACAAA-CGGCTCTTTATTTCAGTCTATAT-AGGTACAAGGGG----------------ATCACATCGTCATAGCGACA
CTACGCCTACCATGGTTGCTCCATGCAAGATGCAGAATGACACGACG------------------CAGCGGAATAACTAC
TCGCAGCGGAACATCGACGACGGTGATGAACTCCACTCCGCAGGGACTCTGGCCGGAATGCTTATCCTAGCTCGAAAACA
AGGAGTCCAC----GACAAACAAGCAACCAAATCCGGCATGACCTGCAAACTGGTATGACACGCCAGGTCAGTACATTGA
ATGTACTTACAAGCTCACAGCAACC-AAGAGCAATCAAGACAGACGACAGCATGGCAATTACAGGTTAAA-CAATGATGA
ACATGATATCACTAGAACAACATCAGATGGGCATGGCATGAACATGTTGAACATAACACATCTAGCATCAT-----ATGA
AATGAGAATGGAAATGTTACTCATGATATGCATAG-GATGATACTA-----------------------------
>SNPs
SS--------------S----S------------S---------------S----S------S-SS-SSSSSS-------
-----------------S--S--------S-SS--------S-----------SS----S------------------S-
S-S----S------------S---------------SS--------------------S---------S------S----
----------------S----------S------------------SS--------S-----------------------
---------------------------S-S-S--S-S------------S-----------------S------------
-S---------------S----------S--------S-----------SS-------------------S---S----S
-----------SS---SSSSS-----------S--------------------S-------S------------------
S------------SS--S-------S--SSSSSSSSS-----------S-S------------S----------------
S---------------------S---------S-----S-----------------------S-------S---S-----
-S---------------------------------------------------------S--S---SS----S-----S-
-------S---------S--------------------------------------------------------------
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---------------S-------------------------S------------------S-------------------
-------------S-------S------SSS--SS----------S----S---S---------S--SSSSS--------
---------------SS---------S---------SSSSSSSS--------S--------S-S--S--S---S------
--------S-----------------SSS------S---S-----S-----------S----S-----------------
-------------------------S---------S-----SSSS---S-----S---S-------S------SS-----
-----------------SSS------------------------------------------------------------
------S--------------------------S----------------------------------------------
----S---------------------------------------SS-S--------SS------------------SSSS
S------------------------------------------------S--------------------------S---
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------------S---------S---------------------------------------------------------
---------------S-----------------------S----------------------------------------
--------------------S--------------------------S--------------------------------
------------S---------------------------SS-----------SSSS-SSSSS-SSSSS-S-SSSSSSSS
SSSSS----------------S--------S----S--S-S-SSSS-SS--S------SSSS--S-------SS------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
----------------------------------------------------------S-----------S---------
---------------------------------------------S--------------------S-------------
---------S--S---------------------------------S-------------------S-------------
------------S-------------------------------------------------S-----------------
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------------------------------------------S-------------------------------------
---------S--------------------------------------S---S----------------------
>forward_787
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-----------------------------------------------CCAGCTTTTGGTCCTCGTGA-------------
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>reverse_3533
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------------AGTGCAAGCCAGATGTTCGA------------------------------------------------
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>forward_2988
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--------TTCCCGTTCATTCGCGGTAA----------------------------------------------------
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>reverse_3983
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--------------------------------------------------------------ATCTAATGTGGCACCCCA
GC------------------------------------------------------------------------------
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