>input_sequence_44057
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---------------------------------------------------------------------ATGTCAGACAT
TCTTGCAGTAGCTCTAGGAGGAGCTGCAGGAGGTTTGGCATTAGTTGGTGCCATCACACTCATTGTAGTGCTATGCCTAC
GGCACCGCAGAAGGAATTCAGATTCTTCAGAGAGTAATTCGTCGGGTCAAGCTCTTTCAGGTACCGCTCAAGTTAGTTTT
TGAGGGGCTTTTAATTTCGGTGTTTTTCAGCTGGTGTCAAATTAGCATTTTACCTTAAAAGACTACTTTTGTTGTGTACT
CTAGACGTGCAAGGAGCAAGATGTATGACACTGGAGGAACTAAGGTCTGCTACAAATAACTTCAGCAGCTCGAATCTCGT
CGGACATGGAATGTTTGGAGAAGTATACAACGGTTTGCTACAGGATG---------------------------------
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------------------------------------------------------GCACAATTATAGCGGTTAAAAGGCGG
CATTCTCCTCCTAGCCAGGAGTTTCTTCATGAGGTGCCAAAATTTTCTC----------------CTAGAGTAGTGGCAT
GTTGTAAGAAATCAAAACCTTGCTTCCTGAGATCAAAACCAATACATGAACTCATGGTTGTTGGTGGCCTTTTCTCCCTA
GGTTAATTACCTGTCGTCGATCCGTCGTCACCCCAACCTTGTAAATCTCTTGGGGTATTGCCAGGACAATGGCATGCAGA
TGCTTGTTTATCAGTATGTCCCCAATGGCAGCATTTCTACGCATTTGCATGGTGATTTTTTCATTGTGTGTTTCCTATTT
TTAGGTCTGATGTACAAGAAGAGCATCAGAAGTGCTAATTTTTCCTTTCTTTCTGCCATCCCTCTACAGGCAACGGCAAT
TCTCCAACGGTGAGGCTAGAATTCAAGCAGAGACTTGCTATTGCTCATGGAACCGCTAAGGGTAAGTTTACATCGGCACC
AACTCCACATTTCCATTGTTGGCAGAGGCATGTTTTCATAACTACATTATGAATTGCCTCATTTTCAGTCACAA-AGTTA
TACAAGGAATCTTAATAGTATAATGACCTTTCCTGTTACTGTTACTCAGGGTTGAGTCACCTGCATTCCATGACCCCTCC
TGCTGTTCACATGAACTTCAAAACTGCTAATGTCCTGGTGGATGCGGATTTCGTACCAAAAGTTGCTGATACTGGCATCC
GAGGCCTACTTGATCGACTAGGCAATGCTGGGCCGCCTTCAATGATATTCAATGATCCATTCGTCGACCCCCGGTAATGA
CTGATCT-------------------------------------------------------------------------
------------------------TGATAGTAGCAAATTTACCGGCATCCATTGCTTGATTTTAATGGGGATTTGTTGCA
TGACCAGGGGGAAGGAGTCCATGATTTTTTCCATACAGAGTGATGTCTACAGTTTTGGTGTGTTCCTTGTGGAGTTGATC
AGTGGAAGGACGGCTGCGTCTGATCAAGGCATTATTGAATGGGTAAATTCTACTGATTCCTGATGATTGTTCAATTTTTC
TTTTCCATATCATTCTCATAATATCTATCATCATACCAGAGCCAAGGTTTCAGTTTGCTTACTATCCATCTCTGATATGC
AGGTTCAAAACTTTCAAGAATCAAGTGATATCTCTACAATAGCAGATAGGAGAATGACCAGTGGCTTTACCCCACAAGGC
ATGAAGGAATTGTTGCGCTTGGCATTGCGGTGCGTGAACCCGACAAGCGAGAATCGTCCGTCGATGAGCCTGGTGGAAGC
TGAGATACACCGGATACGCAAGCAGGAGATCAGGAGGACGACAGGCATGCCAGTGGGCGACACAACTGTGACCCTAGGCA
GCCAGCTCTTCACATCACCAAGATGA------------------------------------------------------
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----------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G477400
TTATCTGCATGATTGCTGTGGAATTTGTTGATATAGCTTATTTGCTATAGATCATACTGCGTGCTTTTTATTCTTATT-A
TGTACTGTAGCACGTATACATGGAGCAACAGTTATACTTTTTTTTTTTTTGCGCATAGAGCAACAGTTAATACTTCTAAA
GG------------------------------------------------------------------------------
-------------------------------------------------------CATTGCTGGTTTGCAAGCACTACTG
CAGAGGAAGCTTTCGCATACCCCTTTTGTATGAGCGACGAAGCGTTCCTGTTATATATAGTGCTGTAGTGGACAGTTTTT
GTGTGTGTGTGTGTGTGTATATGATCATGCATTGTCAACCAAATAGAAGAATATGCAGCGCAGATTATTGTATTTGGGAG
GCTCTTTGCATACCATGGGAATTTTATTAGTGCTAGTCATGGTGCGAAATATTTGAATATTGCAACGGCCGAGGAAATAA
AAGGCAAAAGGCGCAAGCCGCAACGCCACGTAATTGTATGAGAATTCACGAGGCTCTTTAAATTACATGAGAATTTAGTA
CGTGTCATAGCGCGAATTTTTTTGA-----------------ATTATCGCAATGGTTGTGCGCGTTATCTGTTCAATAAA
AAGGAAACCGATAAAAGGC-AAAAGGCGCGAACTGCCAGGCCACTTAATACTCAGTTCTGAATGTCAACATGTTTGCATT
GTTCCATCTGATATT------------------------------TT-GTTTTCCTTTCGCTGATTTATGTGCTAATAAT
TGCTTGGTCTGTGCTGCTTACGTCGTTGTCGGAATGCACTTTTCTATTTCACAACTGCTCATATTCATCTCTCATCTAAC
CGGTCCATCCATACATGACACATATGTTCCATTTTGTATTCTGCAATTGTTTTGTTCACTTTGTATTGTTGCGCTGCCGA
TTCAGCAATATGTCGGTTATTGTTATTGCTTGTTCAAAGTTAAGTTCAGATAAATTAAAAGCACTACACTATTTAGGTTG
CA----TCTGCATCGCCGCTGCTACAAAA--ATTACTAGCCTGTTCTGAAGGAGGAGATTTCATACTAGATGTCAGACAT
TCTTGCAGTAGCTCTAGGAGGAGCTGCAGGAGGTTTGGCATTAGTTGGTGCCATCACACTCATTGTAGTGCTATGCCTAC
GGCACCGCAGAAGGAATTCAGATTCTTCAGAGAGTAATTCGTCGGGTCAAGCTCTTTCAGGTACCGCTCAAGTTAGTTTT
TGAGGGGCTTTTAATTTCGGTGTTTTTCAGCTGGTGTCAAATTAGCATTTTACCTTAAAAGACTACTTTTGTTGTGTACT
CTAGACGTGCAAGGAGCAAGATGTATGACACTGGAGGAACTAAGGTCTGCTACAAATAACTTCAGCAGCTCGAATCTCGT
CGGACATGGAATGTTTGGAGAAGTATACAACGGTTTGCTACAGGATG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GCACAATTATAGCGGTTAAAAGGCGG
CATTCTCCTCCTAGCCAGGAGTTTCTTCATGAGGTGCCAAAATTTTCTC----------------CTAGAGTAGTGGCAT
GTTGTAAGAAATCAAAACCTTGCTTCCTGAGATCAAAACCAATACATGAACTCATGGTTGTTGGTGGCCTTTTCTCCCTA
GGTTAATTACCTGTCGTCGATCCGTCGTCACCCCAACCTTGTAAATCTCTTGGGGTATTGCCAGGACAATGGCATGCAGA
TGCTTGTTTATCAGTATGTCCCCAATGGCAGCATTTCTACGCATTTGCATGGTGATTTTTTCATTGTGTGTTTCCTATTT
TTAGGTCTGATGTACAAGAAGAGCATCAGAAGTGCTAATTTTTCCTTTCTTTCTGCCATCCCTCTACAGGCAACGGCAAT
TCTCCAACGGTGAGGCTAGAATTCAAGCAGAGACTTGCTATTGCTCATGGAACCGCTAAGGGTAAGTTTACATCGGCACC
AACTCCACATTTCCATTGTTGGCAGAGGCATGTTTTCATAACTACATTATGAATTGCCTCATTTTCAGTCACAA-AGTTA
TACAAGGAATCTTAATAGTATAATGACCTTTCCTGTTACTGTTACTCAGGGTTGAGTCACCTGCATTCCATGACCCCTCC
TGCTGTTCACATGAACTTCAAAACTGCTAATGTCCTGGTGGATGCGGATTTCGTACCAAAAGTTGCTGATACTGGCATCC
GAGGCCTACTTGATCGACTAGGCAATGCTGGGCCGCCTTCAATGATATTCAATGATCCATTCGTCGACCCCCGGTAATGA
CTGATCT-------------------------------------------------------------------------
------------------------TGATAGTAGCAAATTTACCGGCATCCATTGCTTGATTTTAATGGGGATTTGTTGCA
TGACCAGGGGGAAGGAGTCCATGATTTTTTCCATACAGAGTGATGTCTACAGTTTTGGTGTGTTCCTTGTGGAGTTGATC
AGTGGAAGGACGGCTGCGTCTGATCAAGGCATTATTGAATGGGTAAATTCTACTGATTCCTGATGATTGTTCAATTTTTC
TTTTCCATATCATTCTCATAATATCTATCATCATACCAGAGCCAAGGTTTCAGTTTGCTTACTATCCATCTCTGATATGC
AGGTTCAAAACTTTCAAGAATCAAGTGATATCTCTACAATAGCAGATAGGAGAATGACCAGTGGCTTTACCCCACAAGGC
ATGAAGGAATTGTTGCGCTTGGCATTGCGGTGCGTGAACCCGACAAGCGAGAATCGTCCGTCGATGAGCCTGGTGGAAGC
TGAGATACACCGGATACGCAAGCAGGAGATCAGGAGGACGACAGGCATGCCAGTGGGCGACACAACTGTGACCCTAGGCA
GCCAGCTCTTCACATCACCAAGATGAAGAAGCATGGAAAGTTATAGCATTTCAAAGGCTAAGCTAGGTTTCCTCTTTCAG
GGTTATAGATTAGCTATTCTAGCTCCAATTTTGCCCCATTAGTTTCTTCTCATATTGAGCCAGCTCATCACCAGCTGTGC
AACTCAAGTGTACAAAAAAGGAGGAGCTGTTAGGCTTCCCTTTTCACCCCTGGTTTATTTTCTTCGT--TATTCGACATA
GGGTTTCAACTTGTACAAAAAAGAATGACAATTCTTTTTTGCTAGACTTTTGTAACACCGAGAGAGTAGCGCCAAACTGG
TAACTTTATATATCTCTACAATTTTAGACATTTGCCAT---TAGTAGCATAGTGTTTCCTGACAATCTGCTCTGCATTTT
TTACAAGGTTGCTTTGTTTGAAGATCCTTTTCTTGGAGCTATGCCATACCTGATTTCCTTAGAGAGTGCTTATATCACTA
TCATACATGTCATCTGAACTGACCTCCATTTCTGAATCTAGCCAATGCGACCATCGTTTCTGAATGGCACCTATGGTTGG
ATGAGGTCATCTCTGTTGACGGTGAAGTCCCAGAGCTCGCCGTACTTCTCGTTGAAGTCCCAGATGTCCATGGAGTTGTA
GTCTGCGATGAGCTTGTCGCGCTTGGACCTCTCCATCATGTAGATCTCCGGCTCAAAGTTGTGCGGTTTGTCCGGCTTGT
CCATCTCGATGACGCAGAACATGACGATGAAGATAGCTGCCCCAATGTAAAGGTACTCCCCCTGGTGGCACGGATAGACC
ATGAGTCTTCCTCCGTTCAGTGAGCCCAAGACA----GATGATGCATGTAAATAGGAGTATTAGAGGTTAATGGAACTAC
TCAATCCGTACCGGCACATCGAAAGCCATTCCGAGGATGACTGCGGGAGGGAATGCCCAGGAGATGAGTGCTGCAAGAGA
TTTCCACTGATGCTAATGAGAAAGGTTCAAGGACATGTA-TACTGTTTCCAGATAGCAAGAGGCACCATGAGTGAG
>chr3D_1
TTATCTGCATGATTGCTGTGGAATTTGTTGATATAGCTTATTTGTTATAGATCATACTGCGTGCTTGTTATTCTTATTTA
TGTACTGTAGCACGTACATATGGAGCAACAGTTGTGCTTCTGTTTTTTTTTCA----TACTAGGAGCAATTCTTGTCCTA
CTGCATGATTTCCTTCAGCGCCCATAAGGCCAATGCCATACTGTTAGATAACAAAAGTTGAAGAATTCTGCATTCTTCTT
TTATTAAATTTCGATTTAACATGTAGTACAACTGGGGATTGTTAAAGGCATTGGACATTGGTGGTTTGCAAGCACTACTA
CAGAGGAAGCTTTCGCAAAA-CCTTTTGTATGGGCGACGAAGCGTTCCTGTTATATATAGTGCTGTAGTGGACTTTTTTT
TTGTGTCTGT--------ATATGATCATGCATTGTCAACCAAATAGAAGAATATGCAGCACAGATTATTGTATTTGAGAG
GCTCTTTGCATACCATGGGAATTTTATTAGTAATAGTCATGGCGCGAAATATTTGAATATTGCAATGGTCTGGGAAATAA
AAGGCAAAAGGCGCAAGACGCAACACCACGCAATTGTATGAGAATTCACGAGGCTCATTGTATTGCATGAGAATTTAGTA
CGTGTTATAGCCCGGAAGTCCTCTGATGGCGCGGAATTTCTTAATATTGCAACGGTCGTGCACGTTATCTAGGAAATAAA
A-GGAATGCGATAAATGGCAAAAATGAGCGAACTGCCAGGCCACTCAATATTCAGTTCTGAATGTCAACATGTTTGCATT
GTTCCATCTGATAACTTAGTTGTCCCCCGCAAAACAAAAGATAACTTAGTTGTCCTTTCTCTGTTTTATGCACTAATAAT
TGCTTGGCCCGTGCTGCTTACGTCATTGGCGGAATGCGCTTTCCTAGTTTACAACTGCTCACATTCATCTCTCATTTAAC
CGGTCCATCCATATATGGCACATATGCTCCATTTTGTATTCTGCAACTGTTTAGTTTGCTTTGTATTGCTGCGCTGTCGA
TTCAGCAATCTGTCGGTTACTGTTATTGCTACTTCAATGTTAAGTCCAGAAAAATTAAAATGTACT-AATATTTAGGTTA
TATCTGTCTGCATCGCCGCTGCTACAAAA--GTTACTATCCTATTCTGAAGGAGGAGATTGCATACTAGATGTCAGACAT
TCTTGCAGTAGCTCTAGGAGGAGCTGCAGGAGGTTTGGCATTAGTTGGTGCCATCACACTCATTGTAGTGCTATGCCTAC
GGCACGGCAGACGGAATTCAGATTCTTCAGAGAGTAATTCGTCCGGTCAAGCTCTTCCAGGTACCGCTCAAATTAGTATT
CGAGGGGCTTTTAATTTCAGTGTTTTTCAGCTAGTGTCAAATTAGCATTTTAGCTTAACAGACTGCTTTTATTATGTACT
CTAGACATGCAAGGAGCAAGATGTATGACACTGGAGGAACTAAGGTCTGCTACAAATAACTTCAGCAGCTCGAATCTCGT
CGGACATGGAATGTTCGGAGAGGTATACAACGGTTTGCTCCAGGATG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GCACAATTATAGCGGTTAAAAGGCGG
CATTCTCCTCCTAGCCAGGAATTTCTCCATGAGGTGCCAAAATTTTCTC----------------CTAGAGTAGTGGCAT
GTTGTAAGAAATCAAAACCTTGCTTCCTGAGATCAAAACCAATACATGAACTCATGGTTGTTGTTGGCCTTTTCTCCCCA
GGTTAATTACCTGTCGTCTATCCGTCGTCATCCCAACCTTGTAAATCTCTTGGGGTATTGCCAGGACAATGGCATGCAGA
TGCTTGTTTATCAGTATGTCCCCAATGGCAGCATTTCTGCGCATTTGCATGGTGATTTTTCCATTGTGTATTTCCTATTT
ATAGTTCTGATGTACAAGAAGAGCATCAGAAGTGCTAATTTTATCTATCTTTCTGCCATCCCTCTACAGGCAACGGCAAT
TCTCCAACTGTGAGGCTAGAATTCAAGCAGAGACTTGCTATTGCTCATGGAACCGCTAAGGGTAAGTATACATCGGCACC
AACTCCTAATTTCCTTTATTGGCAGAAGCTTATTCTC---------TTATGGATTGCCTCATTTTCAGTCACAATAGTTA
TGCAATGAATCTTAA---TATAATGACCTTTCCTGTTACTGTTACTCAGGCCTGAGTCACCTGCATTCCATGACCCCTCC
TGCTGTTCACATGAACTTCAAAACTGCTAATGTCCTGGTGGATGCGGATTTCTTACCAAAAGTTGCTGATACTGGCATCC
GAGGCCTACTTGATCGACTAGGCAATGCTGGCCCGCCTTCGATGATATTCAATGATCCATTCGTTGATCCTCGGTAATGA
CTGAGCTTCTTCTTTGGGGGGGTTAAAACTTAAAAGTTGTTAATTACATCCCTTGACTTCCATTAGTGAATAGTACAAAC
TATATGCTTTCAGTGTGCTGCCTGTGATAGTAGCAAATTTATCGGCATCCCGTGTCTGTTTTTAATGGAGATTTGTTGCA
TGACCAGGGGGAAGGAGTCCATGATTTTTTCCATACAAAGTGATGTATACAGTTTTGGTGTGTTCCTTGTGGAGTTGATC
AGTGGAAGGACGGCTGCGTCTGATCAAGGCATTATTGAATGGGTAAATTCTACCGATTCCTGATGATTGTTCAATTCCTC
TTTTCCATATTATTCTCATAATATCTATCATCATACCAGAGCCAAGGTTTCAGTTTGCTTACTATCCATCTCTGATATGC
AGGTTCGGAACTTTCAAGAATCAAGTGAAATCTCTGCAATAGCAGATAGGAGAATGACCAGTGGCTTTACCCCACAAGGC
ATGAAGGAATTGTTGCGCTTGGCATCGCGGTGCGTGAACCCGACAAGCGAGGATCGTCCGTCGATGAGCCTGGTGGAAGC
CGAGATACACCGGATACGCGAGCAGGAGATCAGGAGGACGACAGCCATGCCAGTGGGCGACACAACTGTGACCCTAGGCA
GCCAACTCTTCACATCATCAAGATGAAGAAGAATGGAAAGTTATAGCATTTCAAAGGCTAAGCTAG-TTTCCTCTTTCAG
GGTTATAGATTAGCTATTCTAGCTCCAATTTTGCCCCATTAGTTTCTTGTCATAGCGAGCCAGCTCATCATCAGCTGTGC
AACTCAAGTGTACAAAAAAGGAGGAGCTGTTAGGCTTCCCTTTTCACCCTTGGTTTATTTTCTTCGT--TATTCGACATA
GGGTTTCAACTTGTACAAAAAAGAATGACAATTCTTTTTTGCTAGACTTTTGTAACATCGAGAGGGTAGTGCCAAACAGG
CAACTTTATATATCTCTACAATTTTAGACATTTGCCATCCTTAGTAGCATAGTGTTTTCTGACAATTTGCTCTGCATTTT
TTACAAGGATGCTTTATTTGAAGATCCTTTTCTTGGAGCTATGCCATCCCTGATTTCCTTAGAGAGTGCTTATATCACTA
TCATACATGTCATCTGAACTGGCCTCCATTTCTGAATCTAGCCAACGCGACCACCATTTCTGAATGGCACCTATGGTTGG
ATGAGGTCATCTCTGTTGACGGTGAAGTCCCAGAGCTCGCCGTACTTCTCGTTGAAGTCCCAGATGTCCATGGAGTTGTA
GTCCGCGATGAGCTTGTCGCGCTTGGACCTCTCCATCATGTAGATCTCCGGCTCAAAGTTGTGCGGTTTGTCCGGCTTGT
CCATCTCGATGACGCAGAACACGACGATGAAGATAGCTGCCCCAATGTAAAGGTACTCCCCCTAGTGACACAAATAGACC
ATGAGTCTTCCTCCGTTCAGTAAGCCCAAGACAGATAGATGATGCATGTAAATAGGAGGAATAGGGGTTAATGGAACTAC
TCGATCCGTACCGGCACATCGAAAGCCATTCCGAGGATGACTGCGGGAGGGAATGCCCAGGAGATGAGTGCTGCAAGAGA
TTGCCATTGATGCTAATGAGAAAGATTCAAGGACATGTA-TACTGTTTCCAGATAGCAAAAGGCACCATGAGTGAG
>chr3A_4
---TCTGCATGATTGCTGTGGAATTTGTTGATATAGGTTATTCGTTATAGATCATACTGCGTGCCTGTTATTCTTGCC-A
TGTACTGTAGCACGTATAGATGGAGCAACAGTTGTGCGTCTGTTTTCTTTTTCATACTACTAGGAGCAATTCTTGTCTTA
CTGCATGATTTCCTTCAGCGCCCATAAGGCCAATGCCATATTGTTAGATCACACAAGTTGAAGAATTCTGCATTCTTCTC
TTATTAGATTTCGATTTAACATGTAGTACAACTGGGGATTGTTAAAGGCA-------TTGGTGGTTTGGAAGCACTACTA
CAGAGGAAGCTTTCGCATACCCCTTTA-TATGGGCGACGAAGCGTTCCTGTTATATATAGTGCTGTAGTGGACAGTTTTT
TTGTGTCTGT--------ATATGATCATGCATTGTCAACCAAATAGAAGAATATGCAGCGCAGTTTATTGTATTTGGGAG
GCTCTTTGCATACCATGGGAATTTTATTAGTGCTAGTCATGGCGCGAAATATTTGAATATTGCAACTGTCTGGGAAATAA
AAGGCAAAAGGCGCAAAACGCAACGCCACGTAATTTTATGAGAATTCACGAGGCTCTTTAAATTACACGAGAATTTAGTA
CGTGTTACAGCGTGAAATTTCTCTGATGGTGCGAAATTTCTGAATATTGCAACGGCCGTGCACGTTATCTAGGAAATAAA
A-GGAATGCGATAAACGGCAAAAAGGCACGAACTGCCAGGCCACTTAATGTTCAGTTCTGAATGTCAACATGATTGCATT
GTTCCATCTGATATT------------------------------TTAGTTTTCCTTTCGCTGATTTATGCGCTAATAAT
TGCTTGGTCCGTGCTGCTTACGTCATTGTCGGAATGCGCTTACCTATTTTATAACTGCTCATATTCATCTCTTGTTTAAC
CGGTCCATCCATATATGGCACATATGTTCCATTTTGTACTCTGCAATTATTTAGTTCACTTTGTATTGTTGCGCTGTCGA
TTCAGCAATCTTTCGTTTATTCTTATTGCTTGTTCAAAGTTAAGTTCAGATAAATTAAA-TGTACT-ACTATTTAGGTTA
CA----TCTGCATCGCCACTGCTACAGAAATATTACTAGCCTGTTCTGAAGGAGGAAATTTCATACTAGATGTCAGACAT
TCTTGCAGTAGCTCTAGGAGGGGCTGCAGGAGGTTTGGCATTAGTTGGTGCCATCACACTCATTGTAGTGCTATGCCTAC
GGCACCGCAGAAGGAATTCAGATTCTTCAGAGAGTAATTCGTCGGGTCAAGCTCTTCCAGGTACCGCTCAAATTAGTTTT
TGAGGGGCTTTTAATTTCACTGTTTTTCAGCTGGTGTCAGATTAGCA-TTTAGCTTAACAGACTGCTTTTATTATGTACT
CTAGACATGCAAGGAGCAAGATGTATGACACTGGAGGAACTAAGGTCTGCTACAAATAACTTCAGCAGCTCGAATCTCGT
CGGACATGGAATGTTCGGAGAGGTATACAACGGTTTGCTCCAGGATG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GCACAATTATAGCGGTTAAAAGGCGG
CATTCTCCTCCGAGCCAGGAATTTCTTCATGAGGTGCCAATTTTTTCTCCGTATCCGCCGATTCTCTAGAGTAGTGGCAT
GTTTTAAGAAATCAAAACCTTGCTTCCTGAGATCAAAACCAATACATGAACTCATGATTGTTGGTGCCTTTTGCTCCCCA
GGTTAATTACTTATCGTCTATCCGTCGTCATCCCAACCTCGTAAATCTCTTGGGGCATTGCCAGGACAATGGCATGCAGA
TGCTTGTTTATCAGTATGTCCCCAATGGCAGCATTTCTACGCATTTGCATGGTGATTTTTCCATTGTGTGTTTCCTATT-
ATTGTTCTGATGTGCAAGAAGAGCATCACAAGTGATAGCTTTTCTTTCTTTCTTGCCATCCTTCTACAGGAAATGGCCAT
TCTCCAACTGCAAGGCTAGAATTCAAGCAGAGACTTGCTATTGCTCATGGAACCGCTAAGGGTAAGTATACATCGGCACC
AACTCCGCATTTCCATTATTGGCAGAGGCATGTTTTCATGACTACATTATGAATTGCCTCATTTTCAGTCACAATAGTTA
TGCAATGAATCT--------TATTGACCTTTCCTATTACTGTTACTCAGGCCTGAGTCACCTGCATTCCATGACCCCTCC
TGCTGTCCACATGAACTTCAAAACTGCTAATGTCCTGGTGGATGCGGATTTCTTACCAAAAGTTGCTGATACTGGCATCC
GAGGCCTACTTGATCGACTAGGCAATGCTGGCCCGCCTTCGATGATATTCAATGATCCGTTCGTTGATCCTCGGTAATGA
CTGAGCTTCTTCTTTGGGGTGGTTAAAACTTAAAAGTTCATAATTACATCCCTTGACTTCCATTAGTGAATAGTACAAAC
TGTATGCTTTCAGTGTGCTGCCTGTGATAGTAGCAAATTTATCGGCATCCCGTGTCTGTTTTTAATGGAGATTTGTTGCA
TGACCAGGGGGAAGGAGTCCATGATTTTTTCCATACAAAGTGATGTATACAGTTTTGGTGTGTTCCTTGTGGAGTTGATC
AGTGGAAGGACGGCTGCGTCTGATCAAGGCATTATTGAATGGGTAAATTCTACTGATTCCTGATGATTGTTCAATTCCTC
TTTGCCATATTATTCTCATAATATCTATCACCATA--------------------------CTATCCATCTCTGATATGC
AGGTTCGGAACTTTCAAGAATCAAGTGAAATCTCTGCAATAGCAGATAGGAGAATGACCAGCGGCTTTACCCCACGAGGC
ATGAAGGAATTGTTGCGCTTGGCATCGCGGTGCGTGAACCCGGCAAGCGAGGATCGTCCGTCGATGAGCCTGGTGGAAGC
CGAGATACACCGGATACGCGAGCAGGAGATCAGGAGGACGACAGCCATGCCAGTGGGCGACACAACTGTGACCCTAGGCA
GCCAGCTCTTCACATCACCAAGATGAAGAAGAATGGAAAGTTATAGCATTTCAAAGGCTAAGCTAGTTTTCCTCTTTCAG
GGTTATAGATTAGCTATTCTAGCTCCAATTTTGCCCCATTAGTTTCTTCTCATAGTGAGCCAGCTCATCATCAGCTGTGC
AACTCAAGTGTACAAAAAAGGAGGAGCTGTTAGGCTTCCCTTTTCACCCCTGGTGTATTTTCTTCGTTGTATTCGACATA
GGGTTTCAACTTGCACAAAAAAGAATGACAATTCTTTTTTGCTAGACTTTTGTAACATCGAGAGGGTAGCGCCAAACTGG
CAACTTTATATATCTCTTCAATTTTAGACATTTGCCAT---TTGTAGTATGGTCTTTTCTGACAATTTGCTCTGCATTTT
TTACAAGGATGCTTTATTTGAAGATCCTTTTCTTGGAGCTATGCCATCCCTGATTTCCTTAGAGAGTGCTTATATCACTA
TCATACATGTCATCTGAACTGACCTCCATTTCTGAATCTAGCCAATGCGACCACCATTTCTGAATGGCACCTATGGTTGG
ATAAGGTCATCTCTGTTGACAGTGAAGTCCCAGAGCTCGCCGTACTTCTCGTTGAAGTCCCAGATGTCCATGGAGTTGTA
GTCTGCGATGAGCTTGTCGCGCTTGGACCTCTCCATCATGTAGATCTCCGGCTCAAAGTTGTGCGGTTTGTCCGGCTTGT
CCATCTCGATGACGCAGAACACGACGATGAAGATAGCTGCCCCAATGTAAAGGTACTCTCCCTGGTGGCACAAATAGACC
ACGAGTCTTCCTTCGTTCAGTGAGCCCAAGACAGAT----GATGCATGTAAATAGGAGGATTAGAGGTTAATGGAACTAC
TCAATCCATACCGGCACATCGAAAGCCATTCCGAGGATGACTGCAGGAGGGAATGCCCAGGAGATGAGTGCTGCAAGAGA
TTGCCGTTGATGCTAATGAGAAAGATTCAAGGACATGTAATACTGTTTCCAGATAGCAAAAGGCACCATGAGTGAG
>chr2D_960
AAAC----------------------------------------------------------------------------
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--------------------------------TTGCTATCCTATTCTGAAGGAGGTGATTTCATACTAGATGTCAGACAT
TCTTGCAGTAGCTCTAGGAGGAGCTGCAGGAGGTTTGGCATTAGTTGGTGCCATCACACTCATTGTAGTGATATGCCTAC
CGCACCGCGGAAGGAATTCAGATTCTTCAGAGAGTAATTCGTCCGGTCAAGCTCTTCCAGGTACCGCTCAAATTAGTTTT
TGAGGGGCTTTTAATTTCGGTGTTTTTCAGCTACTGTCAGATTGGCATTTTAGCTTAACAGACTGCTTTTGTTGTGTACT
CTAGACATGCAAGGAGCAACATGTATGACACTGGAGGAACTAAGGTCTGCTACAAATAACTTCAGCAGCTCGAATCTCGT
CGGACATGGAATGTTCGGAGAGGTATACAACGGTTTGCTCCATGGATAGGATAGGTACTGCAGACAGACAGTGGGCCACT
GTATATTGCCCTAACATAGCATGGCTGAAATAGAATCAGTTTTTTCTCTTCTATTTTTCAGATGAGAGACAGCTTTACAG
AAATGAAAATCACACTCCAAAAAGGGTTTTCGTCGCAAAATTAGGCAGAAAAGGTAGGCATCCATGAGTTGCTCAAACAA
ATCCAAAAATAAACCCTTTTTTCCAGCACAATTATAGCGGTTTGCTCCATGTCCGCACAATTATAGCGGTTAAAAGGCGG
CATTCTCCTCCTAGCCAGGAATTTCTTCATGAGGTGCCAAAATTTTCTCC----------------TAGAGTAGTGGCAT
GTTGTAAGAAATCAAAACCTTGCTTCCTGAGATCAAAACCAATACATGAACTCATGGTTATTGGTGGCCTTTTCTCCCCA
GGCTAATTACATGTCGTCTATCCGTCGTCGTCCCAA--------------------------------------------
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----------------------------------------------------------------------------
>chr6D_1426
TTTCTTCATGAGATACCAAAATTTTCTCCTAGAGTAGTGGCATGTTGTAAGAAATCAAAACCTTGCTTCCTGAGATCAAA
ACCAATACATGAACTCATGGTTATTGGTGGCCTTTTCTCCCCAGGTTAATTACATGTCGTCTATCCGTCGTCATCTCAAT
AATTTGAACAAATTCTGATGGAGTATTCACTCGAATCATTGGCAGCAATTATCTCTTGAATTACTCTTGTCTTGAATTAT
TGGCAACAAATATTTCTTTGAATTACTCTTGTTTATGATCATCAAATTGTTTACTCATATGAGCAAGTCTTAGTTTATGA
TCATCTGATTGCTTATGATCATCAAATTGATGCAGAGCGGGTACTGGGCGAGGAGATGAACCTAGGCCAGCAGCTCCTGT
GCAGCGGCGAGTACTTCAGCGGCAGCAGCTCCTGTGTGCGGTGAGTGCTTCAGCGGCAGCAGCTCCCCTGGGCGCGTGCG
GGCACCAGCTCGCCTTCACCAGCAGCCGGCAGCAGAGCAGCAGCTCGACTCCACCAGCGGACAGCAGCACAGCACCAGCT
CGCCTCCACGAGCAGGCGGCAGCAGAGCATCACCTGGGCGCGCGCGGTCCAGGAGGAGCCCCAGGACGGCGTGGGTGGAG
GTGGAGGCGGGGGCCGAGGCGGAGGTGGAGGGCGGGGACGGAGGCGGGGGCGGAGGCGGAGGTGGAGGGCGGGGCCGGAG
GCGGAGGTGGAGGGCAGGGGCGGTGGCGGAGGTGGAAGACGATCCAGCGACCTGATTCAAAATTTAAACTAAGGGTATAA
ATGTCCATTTGCCCATTTTCACCTGGTCGGAACATTTGCCCCAGCGACCTACATTTCGGTACAGAGGGAGTANNNNNNNN
NNAACAAGCAACTCCTCAAGCATCTCAACTAGCATCTCGACAAGCAACTCAACAAGCAACTCCTCAAGCATCTCGACAAG
CATCTCGACAAGCAACTCCTCAAGCATCTCAACAAGCAACTCCTCAAGCATCTCAACAAGCATCTCGACAAGCATCTCAA
CAAGCAACTCCTCAAGCATCTCGACAAGCATCTCAACAAGCAACTCTCTCCATTATCCCAAGATTGTGCAGGGCATTTGC
ATATACCTCTGGAGGGCATGTAAGTCTTGGAGGTAGCATCCCAAGGTTCTCTAGCCTTTCCTTGTTCGCATGGGGTATTT
TATACCCATTGCCCCCTGCATGGTTCAAGATTTCAACCATGCAAGCTTGTGGAGATAGGAAAACTCTGTTCAGCTTGTAA
ACCTCATAGTTTTCAAATTCATCTAGCACACCCTTGATAAGATCTTGAAGCGTTCTAGGGCTTAGACAATCTGTTAGAGA
TTGCAACGAGTTGAAGAACCCAAGGTCAAGGCCATTCAGATCAGGGCTATTAGCAGAGTAAACCTCAT------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------AATTTCTTCATGAGATACCAAAATTTTCTCC----------------TAGAGTAGTGGCAT
GTTGTAAGAAATCAAAACCTTGCTTCCTGAGATCAAAACCAATACATGAACTCATGGTTATTGGTGGCCTTTTCTCCCCA
GGTTAATTACATGTCATCTATCCGTCGTCATCCCAA--------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>SNPs
--------------------------------------------S-----------------------------------
------------------S--------------S-S---S-S--------S-SSSSSS-S---S--S--S-SS-SSS---
SS------------------------------------------------------------------------------
------------------------------------------------------------S------------------S
--------------------------------S-----------------------------------------------
------------SSS-SS--------------------------------------------------------------
------------------------------------------S-------------------------S-SS--------
-----------------S--------------------------------------------------------------
-----S----------S---S-S-S------------------S---S----S---S--------------SSS------
-S----SS------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S--------------S------------S----S--------------------------------S----
-------------S---S----------------------------------------------------------S---
---------S--------------------------------------------------SS-S-SS------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S--------------S--------
----------------------------------------------------S-----S-----S---------------
------S-------------------------------------------------------------------------
---------------S-----S-----------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
------------------------------------------------------------------------------S-
------------------S-----------S-------------------------------------------------
------------------------------------------------------------S-------------------
S---S---------------------------------------------------------------------------
--------S----------------------------------------------------------S------------
------S----------S---------------------S----------------------------------------
-S---S---------SSS--------------------------------SS----------------------------
----------------------------------------------------S---------------------------
-------------------------------S--------S-----------------------S--S--S---------
----S---------------------------------------------------------------------------
-----------------------------------------S--------SS--SS--S---------S-----------
-------------------------------------S--------S---------------------------------
----------------------------------------------------------------------------SS--
----------S---------------------------------------------------------------------
------SS--------------------S------S--------------------------------------------
-------------------------S-------------------------S----------------------------
S------------------S------------------------S-----------------------------------
-------------------------------S----------------------------------S-------------
------------------------------------------------------S---------------S---------
--------------------------------------------------------------------------------
---------------------------------------------------------S------S---------------
S--------------------------------------------------------S--------S-------------
--------S------S-------------------------------S--------------------------------
-----------------------------------------------------S-S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S-------------------------------------------------SS-------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
--S---S-----------------S----------------------------------S----------------
>forward_918
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TACGTCGTTGTCGGAATGCA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>reverse_2308
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TTACATCGGCACC
AACTCCA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>forward_1999
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------GTTGGTGGCCTTTTCTCCCT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>reverse_3431
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CCAGCTGTGC
AACTCAAGTG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
