>input_sequence_44047
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-------------------------------------------------------------------------------A
TGGCTGGCGGCGGCGGCGG---GTTCCTCAACCTGGAGCGGCACTTCGCCTTCTACGGCGCGTACCACAGCAACCCGGTC
AACGTCTTCATCCACGCGCTCTTCGTCTGGCCCATCTTCCTCACCGCCCTCCTGCTCCTCCACCTCACCGCCCCGTTCCC
GCGCGCCGCCGCGGTCTTCACCGCCGTCTACGGGGCCTTCTACGTCTCCCTCGACCGCCGCTCGGGCGCCCTCGCCGCCG
TCCTCTGCCTCCTCTGCTGGGCCGCCAGCTCCGCCCTCGCCGCCCGACTCGGCTTCTCCCTCGGATGGAAGGTTTTGCAT
CACACAGCCCCGCTCCCCACTCTTGGCTTCTTCCTTTGTTTGGCTTTGTCTTCAGTATTCGTCCTTCTCTGATCTGGTGT
AGTGGTGATAGGCTATGAGATTTGAGAAGAAAATAATTGACTTACAGTTGGATTGATCAGGCTATGTGCGCTGGATTTCT
ATAGTGGGGAACGGGATTTTTAGAGTTTGTGGTCATCTTCGTTGAGCAGCATCAGAGATAA-TTAAACTGAAAAGGGATA
TGGAGTAATCAAAGCTTGAGGCTATTTTATTGACTGCAAATGTCCAAATACCACAATTCACTCTGAAATGCATCGCAGTG
TAGCAAAATTTGATAGCAAGTAGTAAAACTTGTTGCTGCCT-----TTGATGAAATGAAA-TCCTGGTAGAAGATGAGAC
TGTTGGTTGTTTGACAGT---TGACTTTATCTTATAGTGTAGCAGAGAAGTTATATTCTGGAACAAAACATGGAATTGTT
CTGAGGGGAGCTTAT--------ATGTAAAATTTCATGTATCTGTTGTAGAAACTGCAGTATGGATTGTACTGATCTGAT
CATTGTTCATGGTTGATGCACAGCTCTTTACGTTGAGCTACCTGTAACTCGCAATAAACGACACTGCACTAGATGTTTGC
TTGCTCCTTCTACTCCTAATTACTGCACTTTAAAAGGTCATTACACATGATATTGATCAGTTAATATCCAGCATGTACTT
TCGTGATTGTGATGGCAAGA------------------------------------------------------------
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--------------------------------ACCTACTTGGGGATTCAATGCCTTTTTCTTCACCCCTGAAATTTTGAT
TATGTGGATGTTTGCTTTTAGGATGAAGGATGCTGCATAGTTTGCCGTGTTGAAGATGCTTACATGGGGATTCAATCCGT
TTTTCTTAACTCCTGAAATTTTGATTATGTCGACGTTTGCTTTAGGATGAATGATGATGCATGGTTTGCGCTGAAGATGC
TTTGTGGCTATAGAAAAGACGATTACAAAACATAAATTGTTCAACCATAAATTCTTTGTTTTTTTTCCTGCAGGTGGTAT
TGGTAGCTCAGCTGTTCTGTTGGACTATGCAATTCATTGGCCATGGAGTTTTTGAGGCAAGTCTCTATCATATCACGC-T
ATCAATATTAGGTTAAGCACTAGCTATGGAAAATTCTTGCCCATGGATTATTAATACTTG-CACTTACTCTGATTGTAGA
AGCGGGCACCTGCTCTAGTTGACAACCTTGTCCAGGCTTTGATGATGGCCCCATATTTCGTGCTTCTAGAGGTAAAGCAT
TCTGAAGCATCATCACTCTGATGGTCGACAAGAG----ATTGCCTTACAAGTCATGACAATCTTGCCGTTTGCTTCAGAT
TCTTCACAAGTTTGTTGCGTACGAACCATATCCTGGTTTCCATGCCAATGTGCAGAAGCTGATTGACGCTAAACGCAAGG
AGTGGGCGGACAAGAAAGCAAAGAAGATGTCATGA---------------------------------------------
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>chr3B_1_TraesCS3B01G473000
CATAA---------------------------------------------------------------------------
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-----ATATTTTGCCATTGAGAGAACCAAGGGGAACTCCAAATGGAGCTGCTGCCATCGACTATTTGGTAAAAAGAGGTT
GAAACTAAAAGAGGTCTTACCTTAAGAATCGATGTCCAGAAGGCTGATTTTAGTATATATTTTTTGAGGTTGTTTGGACA
GCCCTTACTAAAATAAACGAAGGATTTTGACAAATTGATACTTTGACCAGAAGCATTACAATAACTCTTCATTAGAAAGG
ACAACTCAGTTGCTCTGTCAACACTAGCTTTCACACATAACAGGCTATCATCAGGTATGTGTAAAGTTTCATCAACTAAT
GCTATTATTTGCAGGCTACACAACAATGAAAAAACCCATTGTAATCTATCCATTTATCGTTTCTGTGTGCATCTCATATG
AATTATATGTTCATAAATTGTGTACATGATATTAAAAATATATGCTTATGTGTATAATTGTTTTCATTTTTTTGAGATGT
GGAATAGTATTTGTCGCTGAATAAAAGGCCTTCATGGGATCGGCCACCATATGCATTTTTGGTCCTTGTGTCCCGGTTCT
TTGATTTAATTGAAAAATACTTCATAAAAAAGTTTGTGTGACGAAAATAATTTTGAATAATGTATACTACTCCCTCTGTC
CCATCCTTCATCCCATTATATAAAAAGTTTTTGCAAGCTAGCATAGCTTAGCTTGCAAAAACGTCTTATATTATGGAACT
GAGGAACAGTATTTTATTTGACCGGAGCACG-TCTGACCAAACTGTAGAAGTGTAGAATGATAGAGCCGCCAGAGCAGTA
CCAGCGACATGCCCCCGCCTTGTTCTCCGTC----AAATAAAAGGAAGGCAAAAGTCGACGGCAATCTCTTAGAGTAGAG
CGACACTCCTCCCCGCCCTTC----GTACTGTAG-GCGCCGCCGTTTCCCCCATCCGCTCCTCCCGGCGCCGCCCCTC--
---------------------------CGCCGCGCCTTCTCTGTCCGCGAGCGGCAGCGCCCGATCGGCGAATCTCGCGA
TGGCTGGCGGCGGCGGCGG---GTTCCTCAACCTGGAGCGGCACTTCGCCTTCTACGGCGCGTACCACAGCAACCCGGTC
AACGTCTTCATCCACGCGCTCTTCGTCTGGCCCATCTTCCTCACCGCCCTCCTGCTCCTCCACCTCACCGCCCCGTTCCC
GCGCGCCGCCGCGGTCTTCACCGCCGTCTACGGGGCCTTCTACGTCTCCCTCGACCGCCGCTCGGGCGCCCTCGCCGCCG
TCCTCTGCCTCCTCTGCTGGGCCGCCAGCTCCGCCCTCGCCGCCCGACTCGGCTTCTCCCTCGGATGGAAGGTTTTGCAT
CACACAGCCCCGCTCCCCACTCTTGGCTTCTTCCTTTGTTTGGCTTTGTCTTCAGTATTCGTCCTTCTCTGATCTGGTGT
AGTGGTGATAGGCTATGAGATTTGAGAAGAAAATAATTGACTTACAGTTGGATTGATCAGGCTATGTGCGCTGGATTTCT
ATAGTGGGGAACGGGATTTTTAGAGTTTGTGGTCATCTTCGTTGAGCAGCATCAGAGATAA-TTAAACTGAAAAGGGATA
TGGAGTAATCAAAGCTTGAGGCTATTTTATTGACTGCAAATGTCCAAATACCACAATTCACTCTGAAATGCATCGCAGTG
TAGCAAAATTTGATAGCAAGTAGTAAAACTTGTTGCTGCCT-----TTGATGAAATGAAA-TCCTGGTAGAAGATGAGAC
TGTTGGTTGTTTGACAGT---TGACTTTATCTTATAGTGTAGCAGAGAAGTTATATTCTGGAACAAAACATGGAATTGTT
CTGAGGGGAGCTTAT--------ATGTAAAATTTCATGTATCTGTTGTAGAAACTGCAGTATGGATTGTACTGATCTGAT
CATTGTTCATGGTTGATGCACAGCTCTTTACGTTGAGCTACCTGTAACTCGCAATAAACGACACTGCACTAGATGTTTGC
TTGCTCCTTCTACTCCTAATTACTGCACTTTAAAAGGTCATTACACATGATATTGATCAGTTAATATCCAGCATGTACTT
TCGTGATTGTGATGGCAAGA------------------------------------------------------------
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--------------------------------ACCTACTTGGGGATTCAATGCCTTTTTCTTCACCCCTGAAATTTTGAT
TATGTGGATGTTTGCTTTTAGGATGAAGGATGCTGCATAGTTTGCCGTGTTGAAGATGCTTACATGGGGATTCAATCCGT
TTTTCTTAACTCCTGAAATTTTGATTATGTCGACGTTTGCTTTAGGATGAATGATGATGCATGGTTTGCGCTGAAGATGC
TTTGTGGCTATAGAAAAGACGATTACAAAACATAAATTGTTCAACCATAAATTCTTTGTTTTTTTTCCTGCAGGTGGTAT
TGGTAGCTCAGCTGTTCTGTTGGACTATGCAATTCATTGGCCATGGAGTTTTTGAGGCAAGTCTCTATCATATCACGC-T
ATCAATATTAGGTTAAGCACTAGCTATGGAAAATTCTTGCCCATGGATTATTAATACTTG-CACTTACTCTGATTGTAGA
AGCGGGCACCTGCTCTAGTTGACAACCTTGTCCAGGCTTTGATGATGGCCCCATATTTCGTGCTTCTAGAGGTAAAGCAT
TCTGAAGCATCATCACTCTGATGGTCGACAAGAG----ATTGCCTTACAAGTCATGACAATCTTGCCGTTTGCTTCAGAT
TCTTCACAAGTTTGTTGCGTACGAACCATATCCTGGTTTCCATGCCAATGTGCAGAAGCTGATTGACGCTAAACGCAAGG
AGTGGGCGGACAAGAAAGCAAAGAAGATGTCATGAGGTGTGACCAAGAACTCCTGATGGCTGATGCTACGTTTGCTGTGT
AACGGCGTAAGATGAGAGTGCTCTACCCTGGTTGCCGTTTCCATGTTACTG-AAGATAAACTGAACTGTAGACTGATATC
ATCCTGAGATGTGATACGCTTGTTGCATGACATCGGTG----TAAGATGAGATACGCCATGTTTGGTGTTGTGTTCGTGT
TAGTGGAGATTTTTTATATAATGAACAGTAAAGTAATAATACATTTTCAATAAAGAATCTGGTGCTGTGCCTGTGGTAAA
TTTGACCAACGGCCTGGAACGAGGTTTACGTGTACCGTGGAGGCCGAAACACTGCCAATGTGAGATATGCAGGCTGTGTG
CTTGTCATCGGTGTTGTTTTTTTAGAAGAACTCGCCAAGCTTTTTATTCCAAAGCAACGTTCATAGGTACAACGGTTGGA
TCATGAGGATATTCCAACCACACATGTCTACCTAATTGCAGGTTACAAGAGAACTTGGCGAGCTTATGAGCCTCATAGTT
ATAGTTTCTACTTTCTACGCTCATGAATGAAATTACAAAGTTGAAAACCACTTCTACGTCCTATTATTTCATCGGTGTGT
TTGTTGTGTCGATCCTGGTTTTCGTTTTCCGTCAATTAACTGTGCAATTCTCCTCTCCTTGATTAATGAA------CGAG
ACAAATCTTTTACCCTTAGATTCCAAATATAGAAGCCTCCAAAGTTGAAATGCAGGTCTCCTCGATC------AAAGAGC
CCTGAAATGAGAGAGAGGGAGTGTTGCTTGTGAGAAAATCTCGCAGGCAGTGCCGTAGCCCGGCGACGTCAAGATGGGAA
TGGGCCGACCGGCCATGGCCTTGGACCCGGCCCCATGGCCCCAAGGTCAATATGTGAGGCCATGGGTCGGCTCATTTCAT
CAGATATTTGTGGCCTCGCTGACCCGTTGGGTAGATGAGGCCGACCCAAAATTCAGCAGAATCAACACTGAAAATGATCT
ATGTCTTTGGTA
>chr3B_1
ACAACAATGAAAAAACCCATTGTAATCTATGCATTTATCTTTTTTGTCTGCATCACATATGAATTATATGTTCATCAATT
TTGTACATGATATTACAAATATGTGGTTATGTGTACAATTTTTTTCAAAATCTTTTAGATGTGGAATAGTATTTTTCACT
GAAAAAATAGCTCCATGGGGTCGACCACCATATGCATTTTTTGTCCTTGTGTCCCGGTTCTTTGATGTAATTAAAAAATA
CTCTATAAAAAGAGTTTGTGTGCCGAAAATAATTTTAAATATTGTATAGTATATTTTTCTGAGTGGAGAACGCATGAACA
AATTGCAGGATAAAAGAAAAAATGAGACCATCTAGGACTAGCCCTTGGGGGCATATTTTTATAGAAGAAACTATAAGCGG
TATGGATTGGATAGATTCTGCATTAATTGGAAGAAAAAATCTAGCAATGGCCTCTCAGTCCCATTCCTCCACTGGGAGGA
TCAGGTCCTGTACCAGCTGAGGAGGGCTGGGGATTCTGCTCATGATTGGCCGCATGTTCTAAGGTCAAGGTAGCCAGTTC
TTCTACCAAATCAATGTTGTCTATCCATCCCCTATTCTTTGTATTAATCCTTGGGCTAGTGTGCCACGTCCTTTGAGGGT
AGATCTCCATACATGTGAGGGCACCAATCCTAATTTTTCTTGCAAGAAATCACAAGAAGGAAAATACCTTGACTTGAGAA
TCCAAGCACTTAAATAATTTGGTTCCATCAGGATTTTCCAAGCCTTCCTTGCTAGGAGCGCAAGGTTAAAGAGCTCGATA
TCCCGAAAACCTAACCTCCACATTGTTTGGCCTTGTGATCATGCTCCAAGAGACCCAACTAGCTTTCCTCTGGCCCTCCT
TGCGGCCCCACCAAAACTTTCGTATTAGAGAATTGAGATGCTCGCATAACCCACATGGAAGCTTAAAGCAAGACATAGAG
TAAATTGGTACTGCCTGGGCCATAGATTTAATTAAGACTTCCTTCCCTCCAAGAGACATGATTTTTGTCGTCCAACCTTT
CACTTCGCTCCACACTCGATCCTTTAAGAACTTGAAAGCTCCATTTTTGCACTTGCCAACATCAAAAGGCATCCCAAGGT
ATCTGTCTGATAGGACTTCATTGGCTATGTTCAAGGCATGCTTCACATATGTTTTGAGGTTTATTTTTTTTACATGAAAA
TATTTTATTCATCTAGCAACATTTTACAGAGAGAAATGTGAAGGGACTCACACTGAACAATGGGAGAACATCTATCCCTG
GACATTGACCTAAACCTGAAGATAGGCACTTAACAACTAGAGATCTAGACTACATTTTGACAGCTAACCGGGCCTAATGA
TGAGCTTTTACATTGAAGCACATCTTAACATGAGCTATTCTAGTTGGATGAAAAACTGCAGACAGTTGAAGAGCTACAAG
TGGTCTGATGACCCAATGACCCGCAGTGTTGAGCCAACATGATCGCTACAAGCAGGCCAAAAGTTTCTGCTTGAAGAGGA
GATGCAGGTGGTGGAGATAAAACTAAAACATGCAACTGTTTGAAGTGTTGATTGGTATCAGTTCTGATGATGATTCCTAT
GCCCCCTGGTGCTGCATCATGTCCATTTCAATCTTCCAAGCCGTGTCACAGAAAATGGTCATACCTATAACAGAAGACGG
GTCTTGTTGTGGTGCCAGTTGTTGTACTCTAAAGCAGGTAGAGCGATGATCTTCAAAGGACTCCATATTTTCAAATTTAG
CACCCTGCATAATTGCATTAGCAACTAGAAATATTTGGGAGAGTTTGTAGAATTTCTTTCCAAAAAGAGCATTGTTTCTT
GCTTTCCATAAGCACCTCAAAAAAGTATATAAACTAGTGAGGCTCACATGGGGATGTTGAGATGAAAGTAAGGCCTAAAT
CATTTGGGTAATAGAGTGATTATTTGCAGCAATGGCCTCAGTTTTGAGGAACCAAGGAGATGAGAACCAAGCAGCTTTTG
AGAAAGGACAAAGGAAAAACATGTGCATTTCATCCTCTAAGCTGCCACATCTAGAACACTCTTTATCAATATGTTTAGAA
AATTTACTTGCTCTCTTATCAGCGGGTAGCGCTTGACGAAGAAGTCTCCAAGCGAAAGTTTGAACCCTTGGCACTATGTG
TTTTTCTTTCCATACCTAATTAAGAAGATTAACAATTTGAGGAGGCACAACTTTTGGTCTCTGATTTGCAGGCATCACGA
GATTAGTAAAACAGTGTTTGTAGGCACTTTTCGAAGAGCATTCACATGTAGGTATTATTTTCCAAACAAGAACATCCTGC
CCTAGAGTATTAACAATAGGGGTTTGCAAAATAGCATGAGCCGTTTGTGGCTTGAACAAAGAATTGACCAGTTCAACATT
CAAAGTTTTCTGGTGGGAGATCCAGAGGTCCTTAACAACAGATGGGTAAGAAAAAGGAAGTTGTTGGATAATCAAATTAT
CATAAATATTTTGCCATTGAGACAACCAAGGGGAACTCCAAATGGAGCTGCTGCCATTGACTATTTTGTAAAAAGAGGCT
GAAACTAAAAGAGGTCTTACCTTAAGAATCGCTGTCCAGAAGGCTAATTTTGGTATATTTTTTTTGAGGTTGTTTGGACA
GCCCTTAGTGAAATAAACGAAGGATTTTGACAAATTGATTCTTTGACTAGAAGCATTACAATAACTCTCCATTACAGAGG
ACAGCTCAGTTGCTCCGTCAACACTAGCTTTCAAAAATAACCATCTATCATCAGGTATGTGTAATGTTTCATCAACTAAT
GCTATTATTTGCAGGCTACACAACAATGAAAAAACCCATTGTAATCTATCCATTTATCTTTTCTGTGTGCATCAGATATG
AATTATATGTTCATAAATTGTGTACATGATATTAAAAATATATGCTTATGTGTATAATTGTTTTCATTTTTTTGAGATGT
GGAGTAGTATTTTTCGCTGAATAAAAGCCCTTCATGGGATTGGCCACCATATGCATTTTTGGTCCTTGTGTCCCGGTTCT
TTGATTTAATTCAAAAATACTTCATAAAAAAGTTTCTGTGACAAAG-TAATTTTGAATACTGTATACTACTCCCTCTGTC
CCATCCTCCATCCCATAATATAAAAAGTTTCTACAAGCTAACATAGCTTATCTTGCAAAAACGTCTTACATTATGGAACT
GGGGAGTAGTATTTTATTTGACCGGAGCACG-TCTGACCTAACAGTAGAAGTGTAGAACGATA-AGCCACTAGAGCAGTA
CTAGCGACATGCCCCCACCTT-----------------------------------------------------------
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>chr3D_729
GTAGTT--------------------------------------------------------------------------
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-------------TTATCTGACCGGAGCACG-TCTACA----------AACTGTAGAATGATAGAGCCGCCAGAGCAGTA
CCAGCGACATGCCCCCGCCTTGTTCTCCGTCAAATAAATAAAAGGAAGGCAAAAGTCGACGGCAATCC---AGAGTAGAG
CGACACTACACCAGCGACCCCGCCCCCTCTGAGTTGCGCCGCCGTTTCCCCGC-CCGTTCCTCCCGGCGCCGCCCCTCAC
CCCGCGCTCCGCCTCCGCGGCCTCCTCCGCCGCGCCTTCTCCGTCTGCGAGCGGCAGCGCCCGATCGACGAATCTCGCGA
TGGCT---GGCGGCGGCGG---GTTCCTCGACCTGGAGCGGCACTTCGCCTTCTACGGCGCGTACCACAGCAACCCGGTC
AACGTCTTCATCCACGCGCTCTTCGTCTGGCCCATCTTCCTCACCGCCCTCCTGCTCCTCCACCTCGCCGCCCCGTTCCC
GCGCGCCGCCGCGGTCTTCACCGCCGTCTACGGGGCCTTCTACGTCTCCCTCGACCGCCGCTCCGGCGCGCTCGCCGCCC
TGCTCTGCCTCCTCTGCTGGGCCGCCAGCTCCGCCCTCGCCGCCCGACTCGGCTTCTCTGTCGGATGGAAGGTTTTACAT
CACACACG--------CCACACTTGGCTTCTTCCTTTGTTTGACTTTGTCTTCAGTATTCATCCTTCTCTGATCTGGTGT
AGTGGTGATAGGCTATGAGATTTGAGAAGAAAATAACTGATTTACAGTTGGATTGATCAGGCTATGTGCGCTGAATTTCT
GTGGTGGGGAAAGGGATTTTTAGAGTTTGTGGTCATCTTCGTTCAACAGCATCAGAGATGA-TTAAACTGAAAAGGGATA
TGGAGTAATCAAAGCTTGAGACTATTTTATTGACTGCAAATGTCTACATACCACAATTCACTCTGAAATGCATTGTAGTG
TACAAAAATTAGATAGCAAGTAGTAAAATTTGTTGTTGCCT-----GTGGTTAAATGAAATTCCTGGTAGAAGATGAGAC
TGTTGGTTGTTTGACAGT---TGATTTTATCTTATAGTGTAGCAGAGAAGTTATGTTCTGGAACAAAACATGGAATTGTT
CTGAGGGGAGCTCAT--------ATGTAAAATTTCATCTATCTGTCGTAGAAACTGCAGCATGGATTGTACTGATCTGAT
CATTATTCGTGGTTGATGCACAGCTCTTTACGTTGAGCTACCTGTAACTCGCAATAAACCACACTACACTAGATGTTTGC
TTGCTCCTGCTACTCCTAATTACTGCACTTTTAAAGGTCATTACACATGATTTTGATCAGTTAATATCCAGCATGTACTT
TCATGATTGTGATGGCAAGAAGGCGTCAGCTGTCATAGCATTTTTGTTGCAACATGGTGTTTGGA---------------
---GGGGCTTATCTGATTCTGCCACACTTCCGAAATTCACAC---TTTTTTTATCTGGTCTCAGTGGGTCTAGGTTTCTG
AGGCTAAAAGATTCAAAAGCTAGACTGCAGGCACCTACTTGGGGATTCAATGCCTTTTTCGTCACCCCTGAAATTTTGAT
TATGTCGATGTTTGCTTTTAGGATGGACGATGCTGCATAGTTCGCCGTGTTGAAGATGCTTACATGGGGATTCAATCCCT
TTTTCTTAACTCCTGAAATTTTGATTATGTCGACGTTTGCTTTAGGATGAACGATGATGCATAGTTTGCGCTGAAGATGC
TTTGTGGCTATAGAAAAGAAGATTACAAAACATAAATCGATCAAGCATAAACTCTTTGTTTTTTC----GCAGGTGGTAT
TGGTAGCTCAGCTGTTCTGTTGGACTATGCAATTCATTGGCCATGGAGTTTTTGAGGCAAGTCTCTATCATATCACGC-T
ATCAATATTAGGTTAAGCACTAGCTATGGAAAATTCTTGCCCAAGGAGTACTAATACTTGACACTTACTCTGATTGTAGA
AGCGGGCACCTGCTCTAATTGACAATCTTGTCCAGGCTTTGATGATGGCCCCATATTTCGTGCTTCTAGAGGT-AAGCAT
TCGGAAGCATCATCACTCTGATGATCGACAAGAGATTGATTGCCTTACAAGTCATGACAATCTTGCCGTTTGCTTCAGAT
TCTCCACAAGTTTGCTGCGTACGAACCATATCCTGGCTTCCATGCCAATGTGCAGAAGCTGATTGACGCCAAACGCAAGG
AGTGGGCGGACAAGAAAGCAAAGAAGATGTCCTGAGCTGTGCCCAAGAACCCCTGATGCCTGATGCTACGTCTGCTGTGT
AACAGCG-AAGATGAGAATGATCTGCCCTGTTTGTCGTCTCTATGTTACTG-AAGATAAACTGAACTGTAGACTGATATC
ATCCTGAGATGTGATACGCTTGTTGTATGACATTGGTACGTATAAGATGAGATACGCCATGTTTGGTGTTGTGTTCGTGT
TAGTGGAGATTTTTTATATAATGAACAGTAAAGTAATAATATATTTTTAATGAAGATTCTGGTGCTGTGCCTGTGGTAAA
TTTGACCGACGGCCTGGAACGAGGTTTATGTGTACCGTGGAGGCCCAAACACTGCCAATGTGAGATATGCAGGCTGTCTG
CTTGTC--------------------------------------------------------------------------
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----------------------------------------------------------------------ATCCGTGTGT
TTGTTGTGTCGATCTTGGTTTTCCGCT------AATTAATTGTGCAATTCTGTTCTCCTTGATTAATGAA------TGAG
ACAAATCATTTACCTTT-GATTCCAAATATAGAAGCCTCCAAAGTTGAAATGCAGG------CGATC------AAAGAGC
CCCGGAATGAGAGAGAGGGAGTGTTGCTTGT-------------------------------------------------
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>chr3A_730
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---------TATTTCATCTGACCGGAGCACGGTCTGACCAAACTGTAGAAT----GAATGATAGAGCCGCCAGAGCAGTA
CCAGCGACATGCCCCCGCCTTGTTCTCTGTC----AAATAAAAGGAAGGCAAAAGTCGACGGCAATCTCTTAGAGTAGAG
CGACACTCCTCCCCGCCCTTCGTAAGTACTGTAG-GCGCCGCCGTTTCCCCCATCCGTTCCCCCCGGCGCT---------
--------------------CCGCCTCGGCCGCGCCTCCTCCGTCTGCGAGCGGCAGCGCCCGATCGACGAATCCCGCGA
TGGCC---GGCGGCGGCGGCGGGTTCCTCGACCTGGAGCGGCACTTCGCCTTCTACGGCGCGTACCACAGCAACCCGGTC
AACGTCTTCATCCACGCGCTCTTCGTCTGGCCCATCTTCCTCACCGCCCTCCTGCTCCTCCACATCGCCCCCCCGTTCCC
GCGCGCCGCCGCGGTCTTCACCGCCGTCTACGGGGCCTTCTACGTCTCCCTCGACCGCCGCTCGGGCGCGCTCGCCGCCC
TCCTCTGCCTCCTCTGCTGGGGCGCCAGCTCCGCCCTCGCCGCCCGCCTCGGCTTCTCCCTCGGATGGAAGGTTTTGCAT
CACACAGCCCCGATCGCCACTCCTGGCTTCTTCCTTTGTTTGACTTTGTCTTCAGTATTCATCCTTCTCTGATCTGGTGT
CGTGGTGATAAGCTATGAGATTTGGGAAGAAAATAATTGACTTGCAGTTGGATTGATCAGGCTATGTGCGTTGAATTTCT
GTAGTGGGGAAAGGGATTTTTAGAGTTTGTGGTCATGTTCGTTCAACAGCATCACAGATAACTTAAACTGAAAAGGGATA
TGGAGTAATCAAAGCTTGAGGCTATTTTATTGACTGCAAATGTCTAAATACCACAATTCGCTCTGAAATGCATCGTAGTG
TACAAAAATTAGATAGCAAGTAGTAAAACTTGTTGTTGCCTTTGAATTGATGAAATGAAA-TCCTGGTAGAAGATGAGAC
TGTTGGTCGTTTGACAGTTGATGATTTTATCTTATAGTGTAGCAGAGAAGTTATATTCTGGAACAAAGCATGGAATTGTT
CTGAGGGGAGCTCATATAGTCATATGTAAAATTTCATGTATCTGTCGTAGAA-----------------ACTGATCTGAT
CATTGTTCGTGGTTGATGCACAGCTCCTTACGTTGAGCTACCTGTAACTCGCAATAAACCACACTGCACTAGATGTTTGC
TTGCTCCTTCTACTCCTAATTACTGCACTTTTAAAGGTCATTACACATGATATTGATCAGTTAATATCCAGCATGTACTT
TCATGATTGTGATGGCAAGAAGGCGTCAGCTGTCATAGCATTTTTGTTGCTCCATGGTGTTTGGGGGATGGGGGGTAAGG
GAGGGGGCTTATCTGATTCTGCCGCACTTCCGAAGTTCACGCTTTTTTTTTTATCTAGTCTCAGTGGGTCTAGGTTTCTG
AGGCTTAAAGTTTCAAAAGCTAGACTGCAGGCACCTACTTGCAGATTCAATGCCTTTTTCGTCACCCCTCAATT------
----------TTTGCTTTTAGGATGAAGGATGCTGCATAGTTTGCCGTGTTGAAGATGCTTACATGGGGATTCAATCCCT
TTTTCTTAACTCCTGAAATTTTGATTATGTCGACGTTTGCTTTAGGATGAATGATGATGCATGGTTTGCGCTGAAGATGC
TTTGTGGCTATAGAAAATTAGATTGCAAAACAT-AATCGATCAAGCATAAATTCTTTGTTTTTCC----GCAGGTGGTAT
TGGTAGCTCAGCTGTTCTGTTGGACTATGCAATTCATTGGCCATGGAGTTTTTGAGGCAAGTCTCTACCAAGCTACTATT
ATTAATACTAGGTTGAGCACCACCTGTAGAAAATTCTTGCCCAAGGATTACTAATACTTGACACTTACTCTGATTGTAGA
AGCGGGCACCTGCTCTAGTTGACAATCTTGTCCAGGCTTTGTTGATGGCCCCATATTTCGTGCTTCTAGAGGT-ACGCAT
TCTGTAGCATCATCACTCTGATAATCGACAAGAT----ATTGCCTTACAAGTCATGCCAATCTTGTTGTTTGCTTCAGAT
TCTCCACAAGTTTGCCGCTTATGAACCGTATCCTGGCTTCCATGCCAATGTGCAAAAGCTGATTGACGCCAAACGCAAGG
AGTGGGCGGACAAGAAAGCAAAGAAGATGTCATGAACTGTGCCCAAGAACTCCTGATGCCTGATGCTACGTTTGTTGTGT
AACAGGGTAAGACGAGAGTGATCTACCCTGTTTGCCATCTCTGTGCTATTGAAAGATGAACTGAACTGTAGACTGATATC
ATCTTGAGATGTGATACGCTTGTTGTATGACATCGGTG----TAAGATGAGATACGCCATGTTTGGTGTTGTGTTCGTGT
TGGGGAAGATTTTTTATAGAATGAACAATAAAGTAATAATATATTTTTAATAAAGATTCTGGTGCTGTGCCTGTGGTAAA
TTTGATCAACGGCCTGGAACGAGGTTTATGTGTACCGTGGAGGCCCAAGCA--------------------------CTG
CTTGTC--------------------------------------------------------------------------
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----------------------------------------------------------------------ATCGGTGTGT
TTGTTGTGTCGATCTTGGTTTTCCGCT------AATTAACTGTGCAATTCCATTCTCCTTAATTAATGAAGGGAAATGAG
ACAAGTCATTTA-CCTTGGATTCCAAATATAGAAGCCTCCAAAGTTGAAATGTAGG------CCTCTTGGATGAAAGAGC
CCTGAAATGAGAGAGAGGGAGTGTTGCTTGT-------------------------------------------------
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>SNPs
SSS-S---------------------------------------------------------------------------
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----------------------S----------------------------------S--------S-----------S-
-------------------------------S-------------S-----S------S---------------------
-------S-S-----------------------------S-------S--------------------S-----S-S---
---S-----------S-----------------S-S-----SSS--------------------S---------------
----------------------------------------------------------S--------------SS-----
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---S--------S--------------S------------S---------------------------------------
-----------S-----------------------S------S--SS------------S--------------------
-------S--------S-------------S-S-------S---------S-----------------S-----------
-S---SS-------------------------------------------------------------------------
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---------------------------------------------------------S----------------------
-----------------------------------------S---S---------------------S------------
-----SSS---------------------S--------------------------------------------------
------------------------------------------------------------------S-------------
---------------------------------------------------------------------S---------S
--------------------------------------------------------------------------------
------------S--S--------------------------S-----------------S-------------------
-------------------------------------------------------------------------S------
S----------S-------------------------------S-S----------------------------------
--------------------------------------------S------------------------------S----
--SS------S------------------------S--------------------------------------------
------------------------S-------------------------------------------------------
------------S--------------------------------S-------------S--------------------
--------S--------------------------------------------------S--------------------
-------------------------------S------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-----S------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
-------------------S-----------------S-S----S-------------------SSSSS-----------
--------------------------------------------------------------------------------
-------------------------------------------S------S-----------------------------
-------------------------S-----------------------------------------------S------
-----------------------S--------------------------------------------------------
---S----------S---------------------S--------------------------------S----------
------------------------------------S----S----------------S---------------------
---S----------------S---------S-------S--S--------------------------------------
-------------------------S------------------------------------------------------
-----------------------------------------S-----S--------S-----------------------
----------------------------S----------------S-------------------------------S--
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--------------S--------SSS-SSSSSS------------------SS-----------------------S---
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SSSSSSSSSSSS
>forward_2538
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--------------------------------------CAAATGGAGCTGCTGCCATC----------------------
--------------------------------------------------------------------------------
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------------
>reverse_3853
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------------CTCCCCACTCTTGGCTTCTT------------------------------------------------
--------------------------------------------------------------------------------
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>forward_3128
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--------------------------------------------------------------------ACTCCCTCTGTC
CCATCCTT------------------------------------------------------------------------
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>reverse_5025
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----------------------------------------------------------------TTCCTGCAGGTGGTAT
TGGT----------------------------------------------------------------------------
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------------------------------------------------------GATCAGGCTATGTGCGCTGG------
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>reverse_5541
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--------------------CTCTACCCTGGTTGCCGTTT----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
