>input_sequence_44040
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATGAGGTTAGTAGTCTTAATTCATCCTTTGA-ATCAATA
AGAAGCTG-TTGAAAGATATCATGCATACTGACTTATTTAGGTATGCATGTTTTTCAGAGTCTTAGTTATTACTCCATTA
CTTGACTTGGGTTATTTCAAGTCTTGATTATCTCTGGGCTAGCATAATGATGGAGCATAAGCATTT----------TTTT
A-CCAACTTGTGAACAAGTGCCCAGCATATTTGTTTGGTGTCCTGAGGAATACAATTGAACTTTACGTTGCAACATGACA
TGGTAAATTGAAGTGCGTAGAGAGTCTTGAACTTAATCCATGTTTTATACTCCCTCCGTTCCAAAATAGATGACCCAACT
TTGTACTAACTTTAGTATAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTAAAAAATAGATTTCCCTGGTTGAGAAAC
T-GGAGGTACTGATAGAGCTAATATGTCAAAGGGCTTATATTGAATACAGAATTTTCTATTTGGCTTTTGCATTTTACGG
TACTATGAAGTCTTAGGAAATAGCATTGTTCTGTTGCCTGCTTAAACACCATAAGGCCTAGCTATCGATTTCTACAAGGA
TGTGGTATTGGCAAAAATGGGTATGATTTTGTAGTACCATTTCCATTTTTATACGGTAT----TGTACATGAAACCATGT
TTTTTG-CGCAAATGTTTTGCTATGATCCAGAGCTAATG-AAACAACTGAACTGGCTGCATAAGTGTGAGCTAGACCTCA
ACTTGCTTGATTTTCCTTCCATTATTTTGATTTTTTT-TCTCCAGCTCTCATCGTGTGAAGTGGAATGAGGACAATCTGT
ATGAGATTGAATCAAACAAGCCAGTGCGGCAGAAGATAGCCGAGCCCAAGACACCGTATCACCCTATGATGGATGATGA-
--TGGTACATGTTTTGTTACCTGTATCTCATCATATCTGACCACTATTTGTGCTCATAATGTGCGGGTGCTGATTTTTTT
CACTGATTGCT--CTCTCTAGGGTCACTATCACCAACACGCCCTTTCGACAAGTGTCTAGATGCGACTGTTAGTGCAGAA
GATATATTAACTGCTTTAAATGGTGTGGCCTCTTCAAGTAAAAATGATTCAAAGGATGATGAGTGGGCATCCTCAGATGA
TGACGCAGATGCCATAGAACATGATGGTGGTTGGTAGCTTCTTTCTCAGTAACCATTTTATGTTTCTAGAGTTACTATAG
TAAATAA-TAATTTCGGATGATGAATTTATTTGACTAGCTGAGTTATGCAACTCCATTTTATGGTATCAACTTTCTGTAA
TGAGGTCCATAGTTGATCCAACTAATGACTCTTTCTGTAATGAGATCATATAGCTTTTCTGTTTTC-CTAGCTAAGTTAA
ACCTTTTGTGACTCTTTCTAAGTCTGCATCTTATATCATGATTTATATTTGTATTTGATGTCATGCGCAAGTGTATACTT
CATTGTCAACGTAATGGGC-AATAATAAGCTCACCATCCGAGTCCAGGACGTTATTTGAACATG----------------
-----------CAGTGATAAATGTTGGGTGTTGATGCAGACTCAGAAGCTGACAAATCATCAGTGAGTTTCAAGGAGCAC
CACCGCAATCACTACCATGAATTCCGCAAGGTCAAGGAACTGACGCGCACTGGATCCCTGGTTGAAGATGGGGGCCGTGC
GAATGAGCGAACTGCAAACAACGTCGAAGACAAAACCGCACGAGAGAAGGCAACAGGCGACAAGAGTGAATCGTCAACAT
CACCTCAAGTATGA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr1B_1_TraesCS1B01G066300
AATGTGCATCGCCGGAAATCCTGAAATAAATGCAGGAATAAATGCGAGCACCAGGATTTGAACCCTGGTGGGCTGGGGAT
ACCACAGTCCCTCTAACCATCCAACCACAGATTGGTTTGCATCGAACCACAATTCAGAAGCAGCATTTTTTTGGTTCGAT
TCTGGAGCTCCCACAAAAGAAAACATTTGGATTTAAAGGTTTCGACGACCGGCGGCTTCGTCGGAGCCCACGAGCGTGGT
CCCGACGCCTCCATCAGGCCGGCCGAAGCATTCCTCCGCGCCGCCTCCTCCGACCCCCATCCCGCCGGCCCCTGAGGTCC
TCTGCCCCGCTGGCTCCGACCGCCCTAACCGCCATCCGCTGCCATCCTCCGCCGGCCCCGGCGAGCCCACCCAGCCGGCA
GCTGTTGTCCTTGGACCTCTGCCTCGGTGAGCCTCTCTTTTTCTTCTTTGTACATGAAAGAGTGGATGGATGCAGATGAT
TTGCTTGTTCTTCTCTTTACATGAGTATGGAACAATGGATGGATACATGGATGTAGATGATTTGCTTGATTGATGAATGC
ATGATGTTAGTTTATTTGTAGATGGATGGATGAATGGTACAAGTATGTTAAAAATTATTAGTTCTGTGATTACAAAAGCC
ATAGATTCTTGCTGACAACTGCCCTCGGGTCATTAGCTGGTCCCACCTCCCATGTGTCAAATGCACTATTAGATGGATCC
TGCATGTCGGATTCGGTCTCATATACTACGAGTTAATGAACGTGCGCATTATCGAAACATTATTGCAGAGTATGTGCACT
TTTGTCAAATGCAAGATTAAATGTGTAGTTTTCTGATAATTCTTCCATAATATGTGCATATTTGTTCGATTTACTCTTGA
GTCTTGACAGTTTTTTTCTGCAGGAAAACATAGAATAGGTG-TGTTATCTGGCTTCGATTTGCTGTCTAAACATTTCTTG
ATCTTCACTCATCATCACTGGGAGGTTAAGAAACTTAAAGCATGAGGTTAGTAGTCTTAATTCATCCTTTGA-ATCAATA
AGAAGCTG-TTGAAAGATATCATGCATACTGACTTATTTAGGTATGCATGTTTTTCAGAGTCTTAGTTATTACTCCATTA
CTTGACTTGGGTTATTTCAAGTCTTGATTATCTCTGGGCTAGCATAATGATGGAGCATAAGCATTT----------TTTT
A-CCAACTTGTGAACAAGTGCCCAGCATATTTGTTTGGTGTCCTGAGGAATACAATTGAACTTTACGTTGCAACATGACA
TGGTAAATTGAAGTGCGTAGAGAGTCTTGAACTTAATCCATGTTTTATACTCCCTCCGTTCCAAAATAGATGACCCAACT
TTGTACTAACTTTAGTATAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTAAAAAATAGATTTCCCTGGTTGAGAAAC
T-GGAGGTACTGATAGAGCTAATATGTCAAAGGGCTTATATTGAATACAGAATTTTCTATTTGGCTTTTGCATTTTACGG
TACTATGAAGTCTTAGGAAATAGCATTGTTCTGTTGCCTGCTTAAACACCATAAGGCCTAGCTATCGATTTCTACAAGGA
TGTGGTATTGGCAAAAATGGGTATGATTTTGTAGTACCATTTCCATTTTTATACGGTAT----TGTACATGAAACCATGT
TTTTTG-CGCAAATGTTTTGCTATGATCCAGAGCTAATG-AAACAACTGAACTGGCTGCATAAGTGTGAGCTAGACCTCA
ACTTGCTTGATTTTCCTTCCATTATTTTGATTTTTTT-TCTCCAGCTCTCATCGTGTGAAGTGGAATGAGGACAATCTGT
ATGAGATTGAATCAAACAAGCCAGTGCGGCAGAAGATAGCCGAGCCCAAGACACCGTATCACCCTATGATGGATGATGA-
--TGGTACATGTTTTGTTACCTGTATCTCATCATATCTGACCACTATTTGTGCTCATAATGTGCGGGTGCTGATTTTTTT
CACTGATTGCT--CTCTCTAGGGTCACTATCACCAACACGCCCTTTCGACAAGTGTCTAGATGCGACTGTTAGTGCAGAA
GATATATTAACTGCTTTAAATGGTGTGGCCTCTTCAAGTAAAAATGATTCAAAGGATGATGAGTGGGCATCCTCAGATGA
TGACGCAGATGCCATAGAACATGATGGTGGTTGGTAGCTTCTTTCTCAGTAACCATTTTATGTTTCTAGAGTTACTATAG
TAAATAA-TAATTTCGGATGATGAATTTATTTGACTAGCTGAGTTATGCAACTCCATTTTATGGTATCAACTTTCTGTAA
TGAGGTCCATAGTTGATCCAACTAATGACTCTTTCTGTAATGAGATCATATAGCTTTTCTGTTTTC-CTAGCTAAGTTAA
ACCTTTTGTGACTCTTTCTAAGTCTGCATCTTATATCATGATTTATATTTGTATTTGATGTCATGCGCAAGTGTATACTT
CATTGTCAACGTAATGGGC-AATAATAAGCTCACCATCCGAGTCCAGGACGTTATTTGAACATG----------------
-----------CAGTGATAAATGTTGGGTGTTGATGCAGACTCAGAAGCTGACAAATCATCAGTGAGTTTCAAGGAGCAC
CACCGCAATCACTACCATGAATTCCGCAAGGTCAAGGAACTGACGCGCACTGGATCCCTGGTTGAAGATGGGGGCCGTGC
GAATGAGCGAACTGCAAACAACGTCGAAGACAAAACCGCACGAGAGAAGGCAACAGGCGACAAGAGTGAATCGTCAACAT
CACCTCAAGTATGAGCCGCAAAGTGAATTCTGTGGTCGCTAAGCCTAGGG-AAGTTCAATTAAGCAGGAGCATGCAGTTT
GCGCTGGAACATACTGTACTAATTAGCATCCACACTCTGTCACGCATTCATTTCCGTCGACGAGGACGGCAGAACAGAAT
CTCCGTCCATGGGTCCGTCGAGCAGAAGAACAAGGGAATGAATCCGTGGATTTTTCCAGCTTAAAAGCGCTCTCTACATT
GTACTCTTCCGGCCTCTGATTTATGGAGTAGTACGAGTTGTTGGCATGCGCTCCTTTGTTTCTTGTTGCAAAATCAATCT
ACTGGTTTGCCGGAAAAAGAAACAACCAATCTACCGGTAAGGTAACGAATTTTATACGTTGGCGCACAAGTACCATGGCG
CCGCTAGTGATTGTTGCTCGCAAGTGAGGCCCCCTAGCAACCACCGTGCCGCCATCTACAAATCTTCTCTTGTTCCTTTT
TATTTCCTTATTATTTTGAGATTCGAGCGAGGGCCTCTCCAACAGTTTGTATGTTAGTTTGTTAGTAAAATATATCATGT
CATCAACCAACAGCTTAACATACAACTACTTCAATATGTTGTATTTAGTTTGCCCAATAAGATGTGAAATAATAAATAAG
GTGCCCGCGTGTATTCCTGCCTGGCGTCAGCTGCCCGCATTTATGCCGATGTAGAGCGGCCGCTCCGCATTAACGTCGCC
CAGAGCGGATGCGAGAGAATTGAAGTAGCAGCGACATTGTTAGAATAAATTCGAGGCGCACAGTCGATCTACCAAGGACA
AAGCAATCACACAAGCACGACTGAGATCTGTTAACGAGGTTCAACAATATGGCTACATCCCGGGGCCTGACTACGGGCGC
TCCTCCCCATGACACCGCTATAATACCGCACACCAACCGCTCGGGTGCCGGCACATGCCACCGGCTCCCTCACGTGTCTG
TGCTATTATGTTGGCATAGATTACATCGTGTGTCTACCCCTCATTATATAAGAGG
>chr4B_627
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TGACTACAAAAGCC
ATAGATTCTTGCTGACAACTGCCGTCTGGTCATTAGCTTGTCCCACCTCCCATGTGTCAGATGCACTATTAGATGGTCTG
TGTGTGTCAGATTCAGTAGTCACAGTGGCACACTCCCACCTTCCATCTCCC-----------------------------
----------------------------------------------AAAATATGTGCATCTTTGTCCGATTTAC------
-TCTTGACAGTTTTTTTCTGCAGGAAAACCTAGAATAGGTGGTGTTATCTGGCTTCGAATTGCTGTCTAAACGTTTCTTG
ATCTTCACTCATCA---------------GAAACTTAAAGCATGAGGTTAGTAGTCTTAATTCCTCCTTTGATATCAATA
AGAAACTGTTCGAAAGATATGATGCATACTGACTTATTTTGGTATGCACGTTTTTCAGTC------TTAGTACTCCATTA
CTTGGCTTGGGTTGTTTCAAATC----TTATCTCTGGGCTAGCATAATGATGGAGCATAAGCATCTCTCTCTTTTTTTTG
A-CCAACTTGTGAACAAGGGTTCAGCATATTTGTTTGGTGTCCTGAGGAATACAATTGATTTTTACGTTGCAACATGACA
TGGTAAATTAAAATGTGTAGACAGTCTTTAACTTAATCCAGGTTTTATAC------------------------------
------------------------------------------------------AAAATAGTATTCTCTGTTTGAGAAAC
TGGGAAGGACTGATAGAGCTAATATGTCAAAGGTCTTATATTCGACATAAGATTCTTTATTTGGCTTTTGCATTTTATGG
TACTATGAAGACATAGAAAATAGCATTGCTCTGTTGCCTGCTTAAACACAATAAGGCCTAGCTATTGATTTCTACATGAA
TTTGGTATAGGAAAAAATGGGTATGATTTTGTAGTACCATTTATATTTGTATATGGTTTTACATGTACATGAAACCATGT
TTTTTGGCGCAAATGCTGCACTATGATCCAGAGCTAATGAAAACAACTGAACTGGCTGCATAAGTGTGAGCTAGACCTCA
ACCTGCTTGATTTTGCTTCCATTATTTTGACCTTTTTCTCTTCAGCTCCCATCGCGTGAAGTGGAATGAGGACAATCTGT
ATGAGATTGAATCAAACAAGCCAGTGAGGCAGAAGATAACAGAGCCCAAGACACCGTATCACCCTATGATGGATGAAGA-
--TGGTATATGTCTTGTTACTTGTATCTCATCATATCTGACCACTATTTGTGCTCATAATGTGCAAGCGCTGAATAATTG
CTTTCATTGCTTGCTCTCTAGGGTCACTATCACCAACACGCCCTTTCGACAAGTGTCTAGATGAGACTGTTAGTGCTGAA
GCTATATTGACTGCTTTAAATGGTGTGGCCTCTTCAAGTAAAAATGATTCAAAGGATGATGAGTGGGCATCCTCAGATGA
TGATGCAGATGCCATGGAACAGGATGGTGGTTGGTAGCTTCTTTCTCAGTTACCATTTTATGTTTCTAGAGTTACTAGAG
TAAATCAGTAATTACTGATGTTCAATATATTTGACTAGCTGAGTTATGCGACTTGATTTTATGGTATCAGCTTTCTGTAA
TGAAGTCCACAAGTGATCCAACTATATGACTAC------------TCATATAGCTCCTCTGAATTAGCTAGCTAAGATAA
ACTTTTTGTAACTCTTTCTAAGTTGGTATCCTATATCATGATTTATATTTGTATTTGATGTCTTGCACAAGTGTATACTT
CATTATCAACGTAATGGGC-AATAATAAGCTTACCATCTGAGTCCAGGACTTTATTGGAATAGG----------------
-----------CAGTGAT--ATGTTTGGTGTTCATGCAGACTCAGAAGCTGACAGATCATCAGTGAGTTTCAAAGAGCAT
CGCCGCAATCACTACGATGAATTCCGCAAGGTCAAGGAACTGATGCGCACTGGATCCCTGGTTGAAGACGAGGCCCGTGC
GAATGAGCGAGCTGCAAACAACGTCGAGGACAAAACCGCAGGAGAGAAGGCAACAGGTGACAAGAGTGAATCGTCAGCAT
CACTTCAAGTATGAGCCGCAAAGTGAATTCTGTGGTTGCTAAGCCTAGGG-AAGTTCAACTAAGCGGGAGCATGCAGTTT
GCGC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr4D_842
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TCCC-----------------------------
----------------------------------------------AAAATATGTGCATCTTTGTTCGATTTACC-----
--CTTGACAGTTTTTTTCTGCAGGAAAACCTAGAATAGGTGGTGTTATCTGGCTTCGAATTGCTGTCTAGACATTTCTTG
ATCTTCACTCATCA---------------GAAACTTAAAGCATGAGGTTAGTAGTCTTAATTCCTCCTTTGAGATCAATA
AGAAACTGTTTGAAAGATATGATGCATACTGACTTATTTTG-TATGCACGTTTTTCGGAGTCTTAGTTAGTACTCCATTA
CTTGGCTTGGGTTGTTTCAAATC----TTATCTCTGGGCTAGCATAATGATGGAGCATAAGCATTTCTCT---TTTTTTT
A-CCAACTTGTGAACAAGGGTTCAGCATATTTGTTTGGTGTCCTGAGGAATACAATTGATTTTTACATTGCAACATGACA
TGGTAAATGCAAGTGTGTAGAAAGTCTTGAACTTAATCCAGGTTTTATGC------------------------------
------------------------------------------------------AAAATAGTATTCTCTGTTTGAGAAAC
T-GGAAGGACTGATAGAGCTAATATGTCAAAGGGCTTATATTCGAGATAAGATTCTCTATTTGGCTTTTGCATTTTATGG
TACTATGAAGGCATAGAAAATAGCATTGA--TGTTGCCTGCTTAAACACAATAAGGCCTAGCTATTGATTTCTACATGGA
TGTGGTATTGGAAAAAATGGGTATGATTTTGTAGTACCATTTGTATTTTTATATGGTTTTACATGTACACGAAACCATGT
TTTTTGGCGCAAATGCTGCGCTATGATCCAGAGCTAATGAAAACAACTGAACTGGTTGCATAAGTGTGAGCTAGACCTCA
ACTTGCTTGATTTTGCTTCCATTATTTTGACCTTTTTCTCTTCAGCTCCCATCGCGTGAAGTGGAATGAGGACAATCTGT
ATGAGATTGAATCAAACAAGCCAGTGAGGCAGAAGATAACCGAGCCCAAGACACCGTATCACCCTATGATGGAT---GAA
GATGGTATATGCCTTGTTACTTGTATTTCATCATATCTGACCACTATTTGTGCTCATAATGTGCAA-CGCTGAATAATTG
CTTTCATTGCTTGCTCTCTAGGGTCACTATCACCAACACGCCCTTTCGACAAGTGTCTAGATGAGACTGTTAGTGCTGAA
GCTATATTGACTGCTTTAAATGGTGTGGCCTCTTCAAGTAAAAATGATTCAAAGGATGATGAGTGGGCATCCTCAGATGA
TGATGCAGATGCCATGGAACAGGATGGTGGTTGGTAGCTTCTTTCTCAGTTACCATTTTATGTTTCTAGAGTTGCTAGAG
TAAATCAGTAATTACTGATGTTCAATATATTTGACTAGCTGAGTTATGCGACTTGATTT-ATGGTATCAGCTTTCTGTAA
TGAGGTCCATAAGTGATCCAACTATATGACTAC------------TCATATAGCTCTTCTAAATTAGCTAGCTAAGATAA
ACCTTTTGTAACTCCTTCTAAGCTGGTATCTTATATCATGATTTATATTTGTATTTGATGTCATGCACAAGTGTATACTT
AATCATCAACGTAATGGGC-AATAATAAGCTTACCATCTGAGTCCAGGACGTTATTGGAACAGG----------------
-----------CAGTGAT--ATGTTTGGTGTTCATGCAGACTCAGAAGCTGACAGATCATCAGTGAGTTTCAAAGAGCAT
CGCCGCAATCACTACGATGAATTCCGCAAGGTCAAGGAACTGATGCGCACTGGATCCCTGGTTGAAGACGAGGCCCGTGC
GAACGAGCGAGCTGCAAACGACGTCGAAGACAAACCCGCAGGAGAGAAGGCAACAGGCGACAAGAGTGAATCGTCAGCAT
CACCTCAAGTATGAGCCGCAAAGTGATTTCTGTGGTCGCTAAGCCTAGGG-AAGTTCAACTAAGCGGGAGCATGCAGTTT
GCGC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr4A_845
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CCAAAATATGGGCATCTTTGTTCGATTTAC------
-TCTTGACAGTTTTTTTCTGCAGGGAAACCTAGAATAGGTGGTGTTATCTGGCTTCGAATTGCTGTCTAAACATTTCTTG
ATCCTCACTCATCA---------------GAAACTTAAAGCATGAGGTTAGTAGTCTTAATTCCTCCTTCGAGATCAATA
AGAAACTGTTTGAAAGAAATGATGCATACTGACTTATTTTGGTATGTACGTTTTTCAGAGTGTTAGTTAGTACTCCATTA
CTTGGCTTGGGTTGTTTCAAATC----TTATCTCTGGGCTAGCATAATGATGGAGCATAAGCATTTCTCT---TTTTTTT
AACCAACTTGTGAACAAGGGTTCAGCATATTTGTTTGGTGTCCTGAGTAATACAATTGATTTTTACATTGCAACATGACA
TGGTAAATTAAAGTGTGTAGACAGTCTTGAACTTAATCCAGGTTTTATAC------------------------------
------------------------------------------------------AAAATAGTATTCTCTGTTTGAGAAAC
T-GGAAGGACTGATAGAGCTAATATGTCAAAGGGCTTATATTCGATATAAGATTCTCTATTTGGCTTTTGCATTTTATGC
TACTATGAAGACATAGAAAATAGCATCGATCTGTTGCCTGCTTAAACACAATAAAGCCTAGCTATTGATTTCTACATGGA
CGTGGTATTGGAAAAAATGGGTATGATTTTGTAGTACCATTTGTATTTTTATATGGTTTTACATGTACGCGATG------
TTTTTGGCGCAAATGCTGCGCTATGATCCAGAGCTAATGAAATCAACTGAACTGGCTGCATAAGTGTGAGCTAGACCTCA
ACTTGCTTGATTTTGCTTCCATTATTTTGACTTTTTTCTCTTCAGTTCCCATCGCGTGAAGTGGAATGAGGACAATCTGT
ATGAGATTGAATCAAACAAGCCAGTGAGGCAGAAGATAACCGAGCCCAAGACACCGTATCACCCTATGATGGATGAAGAA
GATGGTATATGTCTTGTTACTTGTATCTCATCATATCTGACCACTATTTGTGCTCATAATGTGCAAGCGCTGGATAATTG
CTTTCATTGCTTGCTCTCTAGGGTCACTATCACCAACACGCCCTTTCGACAAGTGTCTAGATGAGACTGTTAGTGCTGAA
GCTATATTGACTGCTTTAAATGGTGTGGCCTCTTCAAGTAAAAATGATTCAAAGGATGATGAGTGGGCATCCTCAGATGA
TGATGCAGATGCCATGGAACAGGATGATGGTTGGTAGCTTCTTTCTCAGTTACCATTTTATGTTTCTAGAGTTGCTAGAG
TAAATTAGTAATTACTGATGTTCAATATATTTGACTAGCTGAGTTATGCGACTTGATTTTATGGTATCAGCTTTCTGTAA
TGAAGTCCATAAGTGATCCAACTATATGATTAC------------TCATATAGCTCTTCTGAATTAGCTAGCTAAGATAA
ACCTTTTGTAACTCTTTCTAAGTTGCTATGTTATATCATGATTTATATTTGTATTTGATGTCATGCATAAGTGTATACTT
AATTATCAACGTAATGTGGGAATAGTAAGCTTACTATATGAGTCCAGGACGTTATTCGAACAGGCAGAGTCCAGGACGTT
ATTCGAACAGCCAGTGAT--ATGTTTGGTGTTCATGCAGACTCAGAAGCTGACAGATCATCAGTGAGTTTCAAAGAGCAT
CGCCGCAATCACTACGATGAATTCCGCAAGGTCAAAGAACTGATGCGCACTGGATCCCTGGTTGAAGATGAGGCCCGTGT
GAATGAGCGAGCTGCAAACAACGCCGAAGACAAAACTGCAGGAGAGAAGGCAACAGGTGACAAGAGTGAATCGTCAGCAT
CACCTCAAGTATGAGCCATAAAGTGAATTCTGTGGTCGCTAAGCCTAGGGAAAGTTCAACTAAGCGGGAGCATGCAGTTT
GCGC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------
-----------------------S--S-----------S--------------------S----------------SSSS
--SS----S-----S--SSSSSSSSSSS-SSSS-SSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----------S--------------SSSSSS
S----------------------------S----------------------------S---------------------
--------------SSSSSSSSSSSSSSS----------------------------------S----------------
----S---------------S------------------S--------S--------------------S----------
----S--------S------S--SSSS-----------------------------------------------------
------------------S-SS-------------------------------------SS-------------------
---------S-----S-----S------------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS---S---S---------
-----S-S----------------------------------SS---S-SS---S----------------------S--
----------S-S---S-----------S--------------------S---------------S----------S---
-----------S------------------------------SS---------S---S----------------------
---------------S-SS-------------------------------------------------------------
--------------S---------------S----------S------S-----S-------------------------
--------------------------S-----------S-------------------------------------S---
-------S----S-------S-------------------------------------------SS-S-----S-SS--S
-SS-S----------------------------------------------------------S------------S---
-S------S-----------------------------------------------------------------------
---S-----------S-----S----------------------------S--------------------------S--
-----S-------S-S----S-S---S----------------------S---SS--------------S----------
-----------SS-----------SSSSS-SSSSSSSSSSSSSSS----------S-----SS--S----------S---
---------S-------------SS-S---------------------------------------S-------------
----S--------------------------S------S-----------------S-----S-----------------
------------------SS-----S------S---------------------S------------------S-----S
-S-------------S---------------------------S--------------------------S--S------
----------S-----------------------------S-----------------------------------S---
-----------------------------------------------------------S-----S--------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_61
-----------------------------------------ATGCGAGCACCAGGATTTGA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_1802
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CCAGCTCTCATCGTGTGAAGT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_422
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TGTTGTCCTTGGACCTCTGC----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_2182
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TGATGGTGGTTGGTAGCTTCT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_1988
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TGTGCTCATAATGTGCGGGT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_3202
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CGCTAGTGATTGTTGCTCGC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
