>input_sequence_43964
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--------------------------------------------------------------CATACTGATACGTACATC
TCTGAATTTTGGCAGGTGTTCGTGGAGGAGGATCACACAAGTCGACCAGACGCTC---GGACAGTGCTAGGAGGATGTTG
ACCAGAAGACTGCAGCAGGGATGCAGCAGCGTTGTCCTGCTCGTGTTCCTCCTCGTCGCCAACGCGTCAGGTA---CATG
CGTATTGCGTAGCGTTTTGCTTTCGGTTGGTTCGGTAGTCGCTCGCTTTCTACT--------------------------
-------------------------------------------------------------------------------T
TCCATTATTCAGATTCCTTCCTAGTGTGGCCTTGAAATGCATAGCCATGAAAGTGTAGACTGTAGAGTAGATGTCCTGGA
CAACTTTTATA--TATTCTGCGAACAAACACGCTCTGGCTTGCGGTTGCTCCGCGATCATTTTCAGGCCTTGACCTCTTG
TGAAAATGGCCATACTGCATTTTCGCGTTGCGTAGAACCGCATTTTTGCACGGAGACTGTAATAAAGCCGAAAAATGTCT
TTGTACTTG--------ACCAGTGAACGAAATATTTCAGTATGCATGCACCAATTTTGTGAACCTGAATCAGATTGTGCA
CGTGAACCTGCAATTTCCAGCATTCCGGCCTTCTCTATCAAGCTCTGTTGCCCCGGCTAAACTGGAACAGTTTGTCTAAT
TCACGTCTAGATGTTTTTTAAGGATGTCAATCTAAGCTCCCACAAATATATAATGCAGCAACAAGAAACAATAAAAATAG
ACCACGAACAGAGTGGACATCAGCTTAGATGTGTGTTACATCTAGATGTGTCCTAGACTGACCCAAACTGGAACTCCCAA
CGATTTTCATCTGCTTGTTTCTGCATTGCGATTTGCAGGCATCTTCTCTGAACAAGAACAAGTGGAAGAGAGCAGCAAGC
GGCGGTCGCTGGCGACGGGGATGTTCTGCGTGGCGAAGCAGGGTGCGGACCCGACGGCGCTGCAGACTGGGCTCAACTAC
GCGTGCGGCCCCGGGCACGCCGACTGCGGCCCGATCCAGCCCGGCGGCAAGTGCTACAAGGCCAACGACCTGCCGGGGCT
CGCCTCCTACGCCTACAACGACTACTACCAGCGCAACGCCGCCTCCGGCGCCAGCTGCAACTTCAGCGGCACCGCCATGA
CCACCCAAAACGACCCCAGTAAGCACCACCCTGCTCCTCCCTCCCCTGCCACACCCACACACGATCTTCTTCTTCTTCTT
CTTCCCGGCGGGCTCTGATTCTTGTCTCCATGTGGTTCCTCGTTTGCAGGCTCAGGGCAGTGCGTCTTCGCGGGAAGGTG
AGCGCGTATAACTATTTTTGATGTGCATGCATGGCGCGCCACTGTATCGTCCTCTGACGAAGTTCAGAACTGACATGTGT
AAACGTTCACGTGCAGCTCCATGGCGGGAGGCTCCAACGGCACGACGCCGGCGGCGAGCGCCCCAACCAGCCTCTTCCCG
CCGTCGACGTTCACGCCAGGCTTCGGAGGGGGCCCCACCAGCTCCTTGACCCCTCTGGGGGACGACGCG-GACAGCGTCA
TGGCCGGCGCTCGCCGGGCGCTCTGCGTGCTGCTGCTCCTGCTGCCGCTCTTCTTCTTCTGATCGATGCCTCCG-TCGAC
TGTAAATTCTACTCCATGGTGTGGCATTCGTTGCATTT---TACTAGAGAATATCACTATCAGGTTACATGAGAGGGAGG
AACTCTAGACTCTAGAGTGTCATCATCTTTACATGTTTTTGTTCTTCAGAAGTAAACCATCATTGGTTGTACATGTCAGG
TCGGATCTTCTATAAACCAAACTATACTAT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>chr2D_1_TraesCS2D01G161100
GCTCCGCCCTCTGAACAAAAACAGGATTACTCTCTTGTTTGCTGT---TGATATCTCTAGGGCGCGTGCCGTCAGTGCCT
TCTTTTCTCCGATTGGAGTCTCTCTCTCTCTCTCTCATCGAAT----------TCGAATTCGAATTCTTGGACCCCTTGT
GCCGATTTCTTCGGATGGCCGTCGCTGATTTCCCCCAAA-GTATCAGTAGAGTGTTCTCGACGACATGATCCAGCTTAGT
ATCTTTTAGGTTCAGGCTTCATGGCGCTTGGG---TTTTCTCTGCTTT-CTACTTCAGGTTTCAGCCCACAGCTAAGCGA
ATTTCAACTTAG-----TTGCCTGCCACAGTTTGATTCCTTTAATT----------TGAAAGAAACTGGTCATCTTTTTA
ATTGGATTAGATGGCACAAACT----------------------------------------------------------
------------------------------------------TATTTGTTAATTTGTAAGGCTTTGAATTGCGGCAATTT
CAATCGTGTTTGTGCTCTTGCCAAGGATAGCGGTTGGCGAATGGTTGCCCCCATGCCGTCATCCTAGTCTTCACCATACA
CAAAGTTTAAGGACTTTGGAAGGATATCCAATCTAAGTCGTCACACATAAAGTT-AGGACTTCGGCTGGATATTCAATGA
ATAATTCGACTACTACGTTAG---TTTTTCTAAAAGGGTGTGCTTCGTTCTAGAAATAATATATATGCGAGTATCCTGTA
GCTAGATGTTTCAAGTTCACCAATCATCCCTAGCCCTATTTTTTGCAT-CTATCGATTACCATTTAGCAGCT-ACGTATC
TCGCAGTTAT---ATCAGTAGTTTT---------------------CAT------------CACAAATTAAGTTCGTGCC
GACAATACCTTTCTGTTTGTCAATTGTGCCGACAAACCCTTGCGATTGGACAGCGATTAATGTGTCAGATTATCAGAAAC
ATCGCGTCTGACCGACCGCGACGCGCCTCGCTATCTC--CCCTTCTCCTCCAG-----ACGTCTCCTGCTGAAACTTCTG
CTTAATTATGTCGAGAATACGCAGTTCGGTAGTACAGTACTGAACGACCGATACGTGTCTCACATACTGATACGTACATC
TCTGAATTTTGGCAGGTGTTCGTGGAGGAGGATCACACAAGTCGACCAGACGCTC---GGACAGTGCTAGGAGGATGTTG
ACCAGAAGACTGCAGCAGGGATGCAGCAGCGTTGTCCTGCTCGTGTTCCTCCTCGTCGCCAACGCGTCAGGTA---CATG
CGTATTGCGTAGCGTTTTGCTTTCGGTTGGTTCGGTAGTCGCTCGCTTTCTACT--------------------------
-------------------------------------------------------------------------------T
TCCATTATTCAGATTCCTTCCTAGTGTGGCCTTGAAATGCATAGCCATGAAAGTGTAGACTGTAGAGTAGATGTCCTGGA
CAACTTTTATA--TATTCTGCGAACAAACACGCTCTGGCTTGCGGTTGCTCCGCGATCATTTTCAGGCCTTGACCTCTTG
TGAAAATGGCCATACTGCATTTTCGCGTTGCGTAGAACCGCATTTTTGCACGGAGACTGTAATAAAGCCGAAAAATGTCT
TTGTACTTG--------ACCAGTGAACGAAATATTTCAGTATGCATGCACCAATTTTGTGAACCTGAATCAGATTGTGCA
CGTGAACCTGCAATTTCCAGCATTCCGGCCTTCTCTATCAAGCTCTGTTGCCCCGGCTAAACTGGAACAGTTTGTCTAAT
TCACGTCTAGATGTTTTTTAAGGATGTCAATCTAAGCTCCCACAAATATATAATGCAGCAACAAGAAACAATAAAAATAG
ACCACGAACAGAGTGGACATCAGCTTAGATGTGTGTTACATCTAGATGTGTCCTAGACTGACCCAAACTGGAACTCCCAA
CGATTTTCATCTGCTTGTTTCTGCATTGCGATTTGCAGGCATCTTCTCTGAACAAGAACAAGTGGAAGAGAGCAGCAAGC
GGCGGTCGCTGGCGACGGGGATGTTCTGCGTGGCGAAGCAGGGTGCGGACCCGACGGCGCTGCAGACTGGGCTCAACTAC
GCGTGCGGCCCCGGGCACGCCGACTGCGGCCCGATCCAGCCCGGCGGCAAGTGCTACAAGGCCAACGACCTGCCGGGGCT
CGCCTCCTACGCCTACAACGACTACTACCAGCGCAACGCCGCCTCCGGCGCCAGCTGCAACTTCAGCGGCACCGCCATGA
CCACCCAAAACGACCCCAGTAAGCACCACCCTGCTCCTCCCTCCCCTGCCACACCCACACACGATCTTCTTCTTCTTCTT
CTTCCCGGCGGGCTCTGATTCTTGTCTCCATGTGGTTCCTCGTTTGCAGGCTCAGGGCAGTGCGTCTTCGCGGGAAGGTG
AGCGCGTATAACTATTTTTGATGTGCATGCATGGCGCGCCACTGTATCGTCCTCTGACGAAGTTCAGAACTGACATGTGT
AAACGTTCACGTGCAGCTCCATGGCGGGAGGCTCCAACGGCACGACGCCGGCGGCGAGCGCCCCAACCAGCCTCTTCCCG
CCGTCGACGTTCACGCCAGGCTTCGGAGGGGGCCCCACCAGCTCCTTGACCCCTCTGGGGGACGACGCG-GACAGCGTCA
TGGCCGGCGCTCGCCGGGCGCTCTGCGTGCTGCTGCTCCTGCTGCCGCTCTTCTTCTTCTGATCGATGCCTCCG-TCGAC
TGTAAATTCTACTCCATGGTGTGGCATTCGTTGCATTT---TACTAGAGAATATCACTATCAGGTTACATGAGAGGGAGG
AACTCTAGACTCTAGAGTGTCATCATCTTTACATGTTTTTGTTCTTCAGAAGTAAACCATCATTGGTTGTACATGTCAGG
TCGGATCTTCTATAAACCAAACTATACTATATG---TAAAGGATGTCTTTTTTT-AGAAAACTTTCGATCTATTCATTTT
CAATCATGGCAGTACAACAAACATCAGAAATAATGAAAATTACATCCAGATCCATAGACCACCTAGCGGCGACTACCGGA
ACTGAAGCGAGCCGAAGGCGCGCCGCCATCATCGCCCCTCCCTCACCGGAGTCGGGCACAACTTGTTGTAGTAGATAGTC
GGGAAGTCGTAGTGCTAAGGTCTCATAGGACCAGCGCACCAGAACAACAACCGTCGCAGATAAAGAATAACGTAGATCGA
AATGATCCAACCCGAAGACACACGAACGTAGACGAACAACTACCATATCCGAGCAAATCCACCGAGGATAGATCTGCCGG
AGACACACCT--ACACACGTCCATCAACGATGCTAGACGCATCACTGAAAC-----------------------------
-------GGAGCCGCCGTCGTCTCGCCTTCCTGGGCAGGACAGAAACCCTAACAAAACTCAAAGGAAAGACTAACAACGG
AGCCCTCCCGCCGGCCCTCGCCAGGATCCACCGCGCCCTCATGGCCCTAGGGCCACTGGAGACGAGGCGGACCTGCGGTG
GCGCCGGCGAGAGGCATGAACCCTGGCTTTTTTTTGGAACAGGAGGAGGCGGCCATGTGAGGGATCAATTGCAGACTCGA
TGGTTGCACAAAACAGGATGTTTTTTCCTTTTGAAAACCTATGCACTTGCCTGACTTTAGCCAACTGAAACCTGAGGATG
AAGGGAGGGAGGATGAGGAGGCGGAACCTCGCCAGGAGGATGAGGAGGATTGGGATAACCTGGGCCACGATCCGGCCCTT
GAGGATGCTTTTGAAGGTTTGAAGTTGCATGGAGAAGAGGAGAAGACTTGGGTCTGTCTGGTGAAGTGGAAGAACTGATT
AAGGAGGTGAGATGGTTGTGCCTGTTTAGGGTTCATACGATGTGGCCGTTCGGCGTTGCTAAATTCGTTGAGGAACGCGT
GGTCGTGCGCCCAAGGTGTTACCTTCAATATC
>chr2B_1
GCTCCGCCCTCTGAACAAAAACATGATTTTTCTCTTGTTCGCTGTAGATGATACCTCTAGGGCGCGTGGCGTCAGTGCCT
TCTTTCCTCCGATTGGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCGAATTCGAGTTCTTGCACCCCTTGT
GCGGATTTCTTCTGACGGCCGTCGCTGATTTCCCCCAAAAGTATCAGTGAAGTGTTCTCAACGACATGATCCAGCTTAGT
A---TTTAGGTTCAGGCTTCATGGCACTTGTTGGTTTTTCTCTGTTTT-CCACTTCAGGTTTCAGCCCACAGCTAAGCGA
ATTTCAACTTATAGTACTTGTCTGCCACCGTTTGATTCCTTAATCCTTTGAATGAATGAAGGAAACCGATCATCTTTTTC
ATTAGATTAGATGGCATAAACTTACTCCCTCCGTTCGGAATTACTTGTCTCGGAAATGGATGTATCTAGAACTAGTTCTA
GATACATCCATTTCCGAGACAAGTAATTCCGAACGGAGGGAGTATTTGTTAATTTGTAAGGCTTTGAATTGCGGCAATTT
CAATCATGCTTGTGCTCTTGCCAAGGATAGCGGTTGGTGAATGGTTGCCCCCATGCCGTCATCCTAGTCTTCACCATACA
CAAAGTTTAAGGACTTTGGAAGGATATCCAATCCAAGTCGTCACACATAAAGTTAAGGACTTTGGGTGGATATTCAATGA
ATAATTCGGCAGCTTCGGGTTTTTTTTTCCGAAAAGGGTGAACTTCGTTCTAGAAATAATAATT---CGAGTATCCTGTA
GCTAGATGGTCCAGGTTCACCAATCATCCCTAGCCCTATTCTTTTGCAGCGACCGATTATCATTTAGCAGCT-ACGCATC
TCGCAGTTAT---ATCGCTAGTTTTCACTCCATGTTTTCAAACATACAT------------CACAAATTAAGTTCGTGCC
GACAATACCTTTCTGTTTGTCAATTGTGCCGACAAACCATTGCGATTGGACAGCGATTAATGTGTCAGATTATCAGAAAC
ATCGCGTCTGACCGACCGCGACGCGCCTCGCTATCTC--CCCTTCTCCTCCACACCACACGTCTCCTGCTGAAACATCCG
TTTATTTATGTCGAGAATACGCAGTTCGGAAGTACAGTGCTGAACTACTGATGCT-------------------TACATC
TCTGAATTTTGGCAGGTGTTCGTGGAGGAGGATCATACAAGTCGATTGATCGGAC----------GCTGGGAAGATGTTG
ACCAGAAGACTGCAGCAAGGATGCAGCAGCGCTCTTCTGCTCGCGTTCCTCCTCGTCGCCAACGCGTCAGGTAGTACATG
CGCATTGTCTAGCG-TTTGCTTTCGGCTGGTTCGGTGGTCGCTCGCTTTCTACTCCCTCCGTTCGGAACTACTTGTCACG
AAAATGGATGTATCCAGACGTATTTTAGTTCTAGATACATCCATTTCCGAGACAAGTAATTCCGAACGGAGGGAGTACTT
TCCATTATTCAGATTCCTTCCTAGTGTGACCTTGAAATGCATCGCCATGAAAGTGTAGACTGTAGGGTAGATGTCCTGGA
CAACTTTTATATATATTCTGCGAACAAACGCATTCTGGCTTGCGGTTGCTCCGCGATCATTTTCAGGCCTTGATCCCTTG
TGAAAATGGCCATACTGCATTTTCGTGTAGCGTAGAACCGCATTTTTGCACGGAGACTGTAATAAAGCTGAAAATTATCT
TTGTACTCCACTACTTAACAAGTGAACGAAATATTTCAGCATGCATGCACCAATTTTTGCGA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TTTCTGCATTGCGATTTGCAGGCACCTTCTCTGAAGAGCAAGAAGCTGAGGG---GAGCAAGA
GGCGGTCGCTGGCGACGGGGCAGTTCTGCGTGGCAAAGCAGGGCGCGGACCCGACGGCGCTGCAGACTGGGCTCAACTAC
GCGTGCGGCCCCGGCCACGCCGACTGCGGCCCGATCCAGCCCGGCGGCAAGTGCTACAAGGCCAACGACCTGCCGGGGCT
CGCCTCCTACGCCTACAACGACTACTACCAGCGCAACGCCGCCTCCGGCGCCAGCTGCAACTTCAGCGGCACCGCCATGA
CCACCCAAAACGACCCCAGTAAGCACCACCCTACTCCTCCCTCCCCTCCCACACCCACGCACGATCTTTTTCTTCTTGTT
GTTCCCGGCGGGCTCTGATTCTTCCCTCCCTGTGGCTCCTCGTTTGCAGGCTCGGGGCAGTGCGTCTTCGCGGGAAGGTG
AGCGTGTATCTTC------GATGTGCATGCATGGCGCGCCACTGTATCG----------AAGTTCACAACTGACATGTGT
AAACGTTCACGTGCAGCTCCATGTCGGGAGGCTCCAACGGCACGACGCCGGCGGCGAGCGCCCCTACCAGCCTCTTCCCG
CCGTCGACCTTCACGCCGGGCTTCGGAGGGGGCCCCACCAGCTCCTTGACCCCTCTGGGGGACGACGCGTGACAGCGTCA
TGGCCGGCGCTCGCCGGGCGCTCTGCGTGCTGCTGCTCCTGCTGCCGCTCTTCTTCTTCTGATCCATGCCTCCGCTCCAC
TGTAAATTCTACTCCATGGCATGGCATTCGTTGCATTTTACTACTAGAGAATATTACTATCAGGTTACATGAGAGGGAGG
AGCTCTAGACTCTAGAGTGTTATCATCTTTACATGTTTTTGTTCTTCACAAGTGAACCATCACTGGGTGTACATGTCAGG
TCGGATCTTCTATAAACCAAACTATATTATATACTATAAAGGATGTTTTTTGTCAAGAAAACTTTCGATCTATTCATTTT
CAATCATGACAGTACAACAAACATCAGAAATAATGAAAATTACATCCAGATCCATAGACCACCTAGCGACGACTACAAGA
ACTGAAGCGAGCCCAAGGCATGACGCCGTCATCGCCCCTCCCTCGCCGGAGTCGGGCACAACTTGTT--AGTGGACAGTC
GGAAAGTCGTCGTGCTAAGGTCTCATAGGACAAGCACATCAGAACAACAACAGCCGCCGATGAAGAATAACGTAGATCAA
AATGATCCAACC-GAAGACACACGAACATAGACGAACAACAATCAGATCCGAGCAAATCCACCGAGGATAGATCCGCCGG
GGACACACCTCCACACACACCCACCAACGATGCTAAACGCATCA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>chr2A_1
GCTCCGCCCTCGAGAGAG-AAAAGGATTTCTCTCTTGTTTGCTGCTGCTGATACCTCTAGGGCGCGTGCCGTCAGTGCCT
TCCTTTCTCCGATTGGAATCCCTCA----------------------------------TCGACTTCTCGGCCCCCCTCT
GCTGATTTGCTTTGATGGCCGTTGCCGATTTCCCCCAAAAGTATCAGTAGAGTGTTCTCGACGACATGATCCAGCTTAGT
AGTATTCAGGTTCAGGCTTCATGGCACTTGTTGGTTTTTCTCTGTTTCCCCCCTTCAGGTTCCGGTCCACAGCTAAACGA
ATTTTAACTCCTCA---TTGTCTGCCACCGTTTGATTCCTTAATACTTTGAATGAATGAAAGAAACCGATCATCTTTTTC
ATTA----------------------------------------------------------------------------
------------------------------------------------------TGTAAGGTTTTGAATTGCAGCAAGTT
CAATCATGTTTGTGCTCTTGCCAAGGATAGCGGTTGGTGGATGGTTGCCCCCATGCCGTCATCCTAGTCTTCACCATACA
CAAAGTTTAAGGACTTTGGAAGGATATCCAATCCAAGTCGTCACACATAAAGTTAACGACTTCGGCTGGATATTCAATGA
ATAATTCGACC------------------------------ACTTCGTCCTAAAAATAATGATT---CGAGTATCCTGTA
GCTGGATGTTTCAGGTTCACCAATCATCCCCAGCCCTATTTTTGGCGT-CGATCGATTACCATTTAGCAGCAAACGTATC
TCGCAGTTACTACATCGGAAGTTTTCACTCCATGTCTTCAAACATATATACTCCAGTACAACACAAATTAAGTTCGTGCC
GACAATACCTTTCTCTTTGTCAATTGTGCCGACAAACCCTTGCGATTGGACAGCGATTAATGTGTCAGATTATCAGAAAC
ATTGCGTCTGACCGACCGCGACGCGCCTCGCTATCTCTCCCCTTCTCCT-----CCACACGCCTCTTGCTGAAACTTCTG
CCTAATTATGTCGAGAATACGCAGTTCGGTAGTACAATACTGAACTACTGACACGTATCTGACATAATGATACGTACATC
TCTGAATTCTGACAGGTGTTCGTGGAGGAGGATCATACAAGTCGATCGGGCGCTCGGAGGACACTGCTGGGAGGATGTTG
ACCAGAAGACTGCAG---GGGTGCAGCAGCGTTCTTCTGCTCGTGTTTCTCATTCTCGCCAACGCGTCAGGTA---CATG
CGTATTGCGCAGCG-TTTGCTTTCGGTTGGTTCGGTAGTCGCTCGCTTTC------------------------------
---------------------------------------------------------------------------TACTT
TCCATTATTCAGATTCCTTCCTAGTGTGGCCTTGAAATGCATCGCCATAG-AGTGTAGACTGTAGGGTAGATGTCCTGGA
CAACTTTTATA--TATTCTGCGAACAAACACATTCTGGCTCGCGGTTGCTCCGCGATCATTTTCAGGTCTTGACCCCTTG
TGAAAACGGCCATACTGCATTTTCGTGTAGTATAGAACCGCATTTTTGCACGGAGACTGTAA---AGCTGAAAAATATCT
TTGTGCCTA--------ACCGGTGAACGAAATATTTCAGCATCCATGCACCAATTTGACACAT---AATCAGATTTTTTC
AGCCGGCTAATAAACTGAAACTTA--------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
CAATTTTCATATGTTTGTCACTGCATTGTGATTTGCAGGCACCTTCTCTGAAGAACAAGAAGCTGCTGAGGAGAGCAGGA
GGCGGTCGCTGGCGACGGGGCAGTTCTGCGTGGCGAAGCAGGGCGCGGACCCAACCGCGCTGCAGACTGGGCTCAACTAC
GCGTGCGGCCCCGGCCACGCCGACTGCGGCCCCATCCAGCCCGGCGGCAAGTGCTACAAGGCCAACGACCTGCCGGGGCT
CGCCTCCTACGCCTACAACGACTACTTCCAGCGCAACGCCGCCTCCGGCGCCAGCTGCAACTTCAGCGGCACCGCCGTCA
CCACCTCCGACGACCCCAGTAAGCACCACCCTGCTCCTCCCTCCCCTCC--CACCCACACG-----TTGTTCTCCTTCTT
GTTCCCGGCGGGCTCTGATACT------CCTGTGGTTCCTCGTTTGCAGGCTCGGGGCAGTGCGTCTTCACCGGAAGGTG
AGCGAGTATCTTC------GATGTGCATGCATGGCGCGCCACTGTATCGTCCTCTGACGAAGTTCACAACTGACATGTGT
AAACGTTCACGTGCAGCTCCATGGCGGGAGGCTCCAACGGCACGACGCCGGCGGCGAGCGCCCCTACCAGCCTCTTCCCG
CCGTCGACCTTCACGCCGGGCTTCGGAGGGGGGCCCACCAGCTCCTTGACCCCTCTGGGGGACGACGCG-GACAGCGTCA
TGGCCGGCGCTCGCCGGGCGCTCTGCGTGCTGCTGCTCCTGCTGCCGCTCTTCCTCTTCTGATCGACGCCTCCGCTCGAC
TGTAAATTCTACTCCATGGCATGGCATTCGTTGCATTT---TACTAGGGAATATTACTATCAGGTCACATGT--------
-----------------------------------TTTTTGTTCTTCAGAAGTAAACCATATGTGGGTGTACATGTCAGG
TCGGATCTTCTATAAACCAAACTATACTATATG---TAAAGGATGTTTTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------
>chr7D_2777
TTTTTTTGAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------AAAACTTTCAATCTATTCATCTT
CTATCATGGCAGTACAATGAACACTAGAAATAATAAAAATTACATCCAGATCCATATACCACCTAGCGACGACTACAATC
ACTGAAGCGAACCGAAGGCGCGCCGCCGTCATCACCCCTCCCTCGCTAGAGTCGGGCACAACTTGTTATAGTAGACAGTC
GGGAAGTCATTGTGCTAAGGCCCCGTAGGACCAGCGCACCAGAATAACAACCGTCGCTGATGAAGAATAACGTAGATCGA
AAGGATCCAACCTGAAGACACACGAACATAGACGAACCACAACCAGATCCGAGCAAATCCACCGAGGATAGATCCGCCGG
AGACACACCTCCAC----------------------ACGCACCACCGGAACGGGGACTAGGCGGGGAGACCTTTATTCCA
TCTTTAGAGAGCCGCCGCCGTCTCGTCTTCCTGAGTAGGACACAAATCCTAACAAATCTTAAAGGAACGACTAACAACGG
AGCCCTCCCGCCGGCCCTTGCCAGGATCCACCGCGCCCCCATGGCCCTAGGGCCACCGGAGACGAGGCGGACCTGCAGCG
GAGCCGGCGAGAGGCACGAACCCTAGCTTTTCTTGA----AGGAGGAGGCGGC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>chr7D_2784
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AGAAAACTTTCAATATATTCATCTT
CTATCATGGCAGTACAACGAACACTAGAAATAATAAAAATTACATCCAGATCCGTAGACCACCTAGCGACGACTACAATC
ACTGAAGCGAGCCGAAGGCGCGCCGCCGTCATCACCCCTCCCTCGCCGGAGTCGGGCACAACTTGTTGTAGTAGACAGTC
GGGAAGACGTTGTGCTAAGGCCCTGTAGGACCAGCGCACCAGAACAGCAACCGTCGCTGATGAAGAATAACGTAGATCGA
AAGGATCCAACCTGAAGACACACGAACATAGACGAACCACAACCAGACCCGAGCAAATCCACCGAGGATAGATCCGCCGG
AGACGCACCACCA----------------------------------GAACGGGGACTAAGCGGGGAGACCTTTATTCCA
TCTTCAGGGAGCCGCCGCCGTCTCGTCTTCCTGAGTATGACACAAACCCTAACAAATCTTGAAGGAACGACTAACAACGG
AGCCCTCCCGCCGGCCCTTGCTAGGATCCACCGCGCCCCCATGGCCCTAGGGCCACCGGAGACGAGGCGGACCTGTGGCG
GAGCCGGCGAGAGGCACGAACCCTAGCTTTTCTTGG----AGGAGGAGGCGGCC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>SNPs
----------------------------S------------------------S--------------------------
------------------------------------SSSSSS---------------------S----------------
--S---------S-------------------------------------------------------------------
-SSS---------------------S----SS------------S-----S-----------------------------
-----------S--------S-------S------------S-SSS--------------------S-S----------S
---S------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
-----S-------------------------------S------------------------------------------
---------------------------------S----------------------------------------------
----------SS--S--SSSS-------S-S---------SS-------------------SS-SSS-------------
-------------S--------------------------------S---S-----------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
---------------------------------------------S--S-------S---S-----S-------------
-----------------------------------S---------S-S-S-------------S----S-----------
-----------------S---------------S-S--------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S----------------------S--------------
-------------------------------SS------------------------------------------S----
-------------------------S--S---------------------------------------S-------S---
--------S------------------------------S-----------------SSSS-SSSS---------S-SSS
S-SSSS-SSSS--SS-SS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-S--------S--S---------------------------S----------S--S--S---SS--S---SSS------S
--------------------SS---------------------S------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------S-----------
S----------------------SS----S-----------------------S--------------------------
----S----SSSSSSSSSS-----------------------------------------------S-------------
----------------------------------------------------------------S---------------
--------S--------S--------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------SS---------------------------------S-------------------------
-S------------------S-----------------------------------------S---S-------------
----------------------------------------------S----S-S--------------------------
--------------------------------------------------------------------S-------SS--
---------------------------S----------------S------------------------------S----
----------S----------------------------------------------S---S------------------
------------S--------------S------------S----S----------------------------S-----
------------------SS---S-----------S---------S-S--------------------------------
-----------------S-------S-------S-S------S-------------S--S-------S------------
------------------S-------------------S-----------------S---------------------S-
-S--------------S-------S------S--S-SSSS--------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_266
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TAGGTTCAGGCTTCATGGCG------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_1892
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------CCCGGCTAAACTGGAACAGT---------
--------------------------------------------------------------------------------
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--------------------------------
>forward_1855
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GTGCA
CGTGAACCTGCAATT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------
>reverse_3831
--------------------------------------------------------------------------------
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----------------------------------------------------------------------CCTGAGGATG
AAGGGAGGGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
