>input_sequence_43948
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----------------------------------ATGGTCGTCCTCGCCCCCGCCTCCTCCTTCCACCACCAGAGGGCCG
CTGCTGCTGCCGCGGCG---GCCGACGGCGCCGACCAAGGGTTCGCGCTCCTCTCCGCGGGCCAGTGCGGGCTCGCCGAC
CCTGGCGCTCCCAAGTCCGGCAGCGCCATCCAGTTCTGGCAGTCGCACTCGCAGCCCCCCACGACGCCGCCCGCAGCTGC
CCCCGCCGACAAGAAGCAGGTCATCTCCGCGGTGGACTACGGCGGCGTCTCCTCCGGATCCGGCGGCTCCACCACGTGCA
GCGACTGCGGCAACCAGGCGAAGAAGGACTGCCCCCACCAGCGATGCCGGACGTGCTGCAAGAGCCGCGGCTTCGACTGC
ACGACGCACGTCAGGAGCACCTGGATCCCGGCCGCCCGGCGCCGCGAGAAGCACCCGCTCGGCGGCGACCTTTCCCCTCC
CGCCGCTCCTGCCACGGCGGCCACCAAGAAACCGCGGTTCCACTCCTCCCAGACCACCACCACCACCACCCCCTCTCGCA
CCTCCACCTCCAACGGCACCTCCTCGAGCCAACAAGGTGATCGACCAGCACAGACGCACGCACGCACATCCCAAGTCTAA
GCA-------CCCACAATTCAAGAAACTTGGACACTGATCACATCTTCTACCCCCATCCTCTGCAGACGCGCCGTTCAGG
GACAGCCTGCCGCGGCACGTGCGCGCGCCGGCGGTGTTCCGGTGCGTGCGGGTGACCTCCGTCGACGACGGCGCGGACGA
GTTCGCGTACCAGGCGGCGGTGAGCATCAACGGCCACATGTTCCGGGGGTTTCTCTACGACCAGGGCGCCGACAACGGCC
GCGCCAGCAACGACGAGCCCAGCCACGCGCACGCGGCCGCCGTGCGTAGCATCTCCGACCTCCACCTCGGCAACGCCTCC
GCCGTGCCGCCGGACATGTACAACACCGTCAGCGGGGCGCTCATTCTCGGCGGGATGGGCTATGGTAACACCATGAACTG
AAAACTAT------TAGTGCTAGTAGCTAGTAAGCCTGGTGCAATAATTGTAGACATCCATCTTGTTACTACATGTCACC
TCATTTCTTTCATCTCA--TCACCAGTAGTGGTACTACCCTGTCTTCCATTTTGCTGCTGCATGCTGTGTGCCTGTGCCA
CAGCTAACTTCCA-GTCTTTTGT---TAGTAGAAGTTGGAAAGAAAATGAAAAGAAAACCAGTCAGTATTTCCAAGGTAA
ACTTGCTGTACAACATACTACCATATGGCTTTTCTTATGTGGCTGATGCTGTTGTGTTACCATTTTTTTAAT--------
-TTTGCATATGTTGGGAACTGCAAATCATATACACTTAAAATCACCATGTTCTGCGGGTCCTTCTTTGGAGTAATTCTTT
TTAGACAAAACCTCATTTGTAGTAATCACTTGACGCCATGGAGAGGTTGATGGTAGT---ACTATTGTTAAATTTGGCAG
CTGAAAAGTTTGACTCTTTGATGCTCTTCCTAATCCCCACGCTATCGACCACTTCACTTCATCCTCTTGCGTGCTATGGC
TTCCGAATT---GCCAGTCTTGTTTACCTTGTTCAGCTAGTACTA----GCACGTATACTCT--TATCTCTTTCCCAAAT
TTACGGGGTTGGTAGGAATAGAAAGACCATGGGTTGGATTCTTACTTGCTTTGTATGTGCTGTTAAGCATCTTATCCGTG
CATTGGAACTTGTAGCGGGAAAAAGAGAGCCAATGTGCAATGCATGTGGTGATAAGAATTCTCTTGCCCTCTTAAAATAA
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>chr1D_1_TraesCS1D01G241300
GGCAGCGGCAGAGCAGGAGGGGAGAAGAAGAA----GGGAGCCGGGCGGGCGCGTCAGTGAAAGCTGCCAG------GCC
GCGCTGCGTGCCCGGTGCATGCGGCGCCCCCACAAGAAGTCTCGATCCCCCACTGGGCGCAG------GCGCAGCGAGCG
AAAGATGAGATCCCGTGGCCGATCACAGCCGG-CGCGCAGAGGAATTTTTCAGCCGCAGACCCCACCCGCAGCCACTTCT
TCACGCTGAAGCAGC-------------GCAGCACCCGGCCGGCCCCTCTCTCCTTCTCTGCTTCT---CTCCTATCATC
ACCAGCACACAGTATACACACGCTCTCTCCCTCTCACACTCCGTTGTCCCGCGGA---AAGTAGAGGGATAAAGAACACA
AGCGGCTAGCCCCTGTGTCCTGTAGACCGTAGGTGTATACACACACA----GATACTCCAAAAGGGAGGAGGAGAGAGAG
AAGGCTACCTA----GCAAGCTATGCTAAC----CTAGGGTAGGCTCTAGAGACTAGAGAGAG----GCTGGCTAGCTAG
GGTAGCTAGGTGGTAGTAGGGTAGAGCCTTTTGTGTTTTCTTTTCTTTACTCTTGGATGCCCCTTCCTTCGCTGGGAAGA
GAGATTCTTCTTTAAAGTGGA----GAGGAGGGGTT-----TCCGGCCGTAGGCTCACTCAACTCAGCTGCTAGCCGCTA
CTCCTCAGA----------GGAGCATCTTCGTCTGCTCTTGCGCCTTTTCCGCTCGCTCGCTGCCTGCCTGCCTGCCTTT
GGAGCTAAGCTTAGCCTAGGTAGGCGTAGCGGCT--AGCTAGCCAGCCAGGGAGGGGAAGCTACTGCCCCC-ACCAGCAA
GCGTGGCGTCGTCGGGGAGGCGCTTCCCATCGGTCTCCGCGGCCTACGCGGACTGGATCGCGTCGGCCGGCGGCGACGAC
CTCTCGCTCGGCTTCAATGCCGCTGGCGCGTCCGCCGCCGGCCTCTGGGCCCCCGCCTCGCGCCAGTCCGCCGCGCTCAA
CTACGGGATAGCGGCGGCTGCAGGTGATGTCGGCATGGTCGTCCTCGCCCCCGCCTCCTCCTTCCACCACCAGAGGGCCG
CTGCTGCTGCCGCGGCG---GCCGACGGCGCCGACCAAGGGTTCGCGCTCCTCTCCGCGGGCCAGTGCGGGCTCGCCGAC
CCTGGCGCTCCCAAGTCCGGCAGCGCCATCCAGTTCTGGCAGTCGCACTCGCAGCCCCCCACGACGCCGCCCGCAGCTGC
CCCCGCCGACAAGAAGCAGGTCATCTCCGCGGTGGACTACGGCGGCGTCTCCTCCGGATCCGGCGGCTCCACCACGTGCA
GCGACTGCGGCAACCAGGCGAAGAAGGACTGCCCCCACCAGCGATGCCGGACGTGCTGCAAGAGCCGCGGCTTCGACTGC
ACGACGCACGTCAGGAGCACCTGGATCCCGGCCGCCCGGCGCCGCGAGAAGCACCCGCTCGGCGGCGACCTTTCCCCTCC
CGCCGCTCCTGCCACGGCGGCCACCAAGAAACCGCGGTTCCACTCCTCCCAGACCACCACCACCACCACCCCCTCTCGCA
CCTCCACCTCCAACGGCACCTCCTCGAGCCAACAAGGTGATCGACCAGCACAGACGCACGCACGCACATCCCAAGTCTAA
GCA-------CCCACAATTCAAGAAACTTGGACACTGATCACATCTTCTACCCCCATCCTCTGCAGACGCGCCGTTCAGG
GACAGCCTGCCGCGGCACGTGCGCGCGCCGGCGGTGTTCCGGTGCGTGCGGGTGACCTCCGTCGACGACGGCGCGGACGA
GTTCGCGTACCAGGCGGCGGTGAGCATCAACGGCCACATGTTCCGGGGGTTTCTCTACGACCAGGGCGCCGACAACGGCC
GCGCCAGCAACGACGAGCCCAGCCACGCGCACGCGGCCGCCGTGCGTAGCATCTCCGACCTCCACCTCGGCAACGCCTCC
GCCGTGCCGCCGGACATGTACAACACCGTCAGCGGGGCGCTCATTCTCGGCGGGATGGGCTATGGTAACACCATGAACTG
AAAACTAT------TAGTGCTAGTAGCTAGTAAGCCTGGTGCAATAATTGTAGACATCCATCTTGTTACTACATGTCACC
TCATTTCTTTCATCTCA--TCACCAGTAGTGGTACTACCCTGTCTTCCATTTTGCTGCTGCATGCTGTGTGCCTGTGCCA
CAGCTAACTTCCA-GTCTTTTGT---TAGTAGAAGTTGGAAAGAAAATGAAAAGAAAACCAGTCAGTATTTCCAAGGTAA
ACTTGCTGTACAACATACTACCATATGGCTTTTCTTATGTGGCTGATGCTGTTGTGTTACCATTTTTTTAAT--------
-TTTGCATATGTTGGGAACTGCAAATCATATACACTTAAAATCACCATGTTCTGCGGGTCCTTCTTTGGAGTAATTCTTT
TTAGACAAAACCTCATTTGTAGTAATCACTTGACGCCATGGAGAGGTTGATGGTAGT---ACTATTGTTAAATTTGGCAG
CTGAAAAGTTTGACTCTTTGATGCTCTTCCTAATCCCCACGCTATCGACCACTTCACTTCATCCTCTTGCGTGCTATGGC
TTCCGAATT---GCCAGTCTTGTTTACCTTGTTCAGCTAGTACTA----GCACGTATACTCT--TATCTCTTTCCCAAAT
TTACGGGGTTGGTAGGAATAGAAAGACCATGGGTTGGATTCTTACTTGCTTTGTATGTGCTGTTAAGCATCTTATCCGTG
CATTGGAACTTGTAGCGGGAAAAAGAGAGCCAATGTGCAATGCATGTGGTGATAAGAATTCTCTTGCCCTCTTAAAATAA
--TATGCAGCTGA-----TAGTAAATTACTTGGGTCACGATCATGGAAGCCAATAATGGTACAGTGCTCCATGCATTAGC
CTTGGCCTGTTTGCTAGTCCTAGTAGCTGCTTGTTAACAATATGATGAAGGGACATCTTCTCTTAAACTTTTGTTGCGAG
CCCCCATATTTATTCCCCCTGCTGCCGGATCCCAAATCCAGAATATACATG---ACCCCTTTGTTCCGTAATATAAGATG
TTTT-CCAAGCTAACATAATTTCCGATCAAGATTTTTCATATATATTCTGTCTGAGCAAGTACACATAGAGATATATTTC
CAAGCTAACAAAGGGGTACACATAGAGATATATTCCCCCTGCTTGAGGACTAAGGAGTGGCCATATCTCAATCAACACAG
AACTAAATCTGTCTGAGCAAGTACAC--ATAGAGATATATTTCCGATCAAGATTTTTCATCCATTCCATACTTGTAAGAA
TCTCTAATTTTGATCAGATTATTCTTAGCAGCGAGAAATAACAAGACCATATTTTTATGAT-------------------
---------ATTTGTTAGTTTCAGTCTGATTTT-T-TTTCTTCATTCCTAAGCAGGCCAAGTTATTACACAACAAAGTCA
TCTTGTGCTGCGGATCTATTGACTGTAAAACTTGCATAAAGAATTTTTCTGTAACTTAAGTTTTAGGAGTGCAAATTACA
AATGATTTCTGAAAATGCACTATACCTAATTTTTCTTGCATGAGAAACCAACGATGTTTAGATCTGTATCGTAAGTTTGT
--------------------------AGATTTAAAGTACTTCTAGAATGTCTACTATGTATTGAAAAATATATCAGTTCG
GTTCGTCTAAGATTGGCAGGTGATCATTGGATCAAAGGAAATAA---ATAGATAAAGAACCAGAGGGTTAATTTGGTGGC
TATTTCCACCTTGTTGTGTCATGTCAAATGTGAGTTTGGTCGATTTGCTTGAGTCACCGCAACTTGAGGACGAAATTTAT
GCTGTGGTAGCTGGTCGAAGGGGTTGGGTAAG
>chr1A_1
GGCAGCGGCAGAGCAGGAGGGAGAAG--AAGAGAAGGGGAGCCGGGCGGGCGCGTCAGTGAAAGCTGCCAGCAGGCTGCC
GCGCTGCGTGCCCGGTGC----GGCGCCCCCACAAGAAGTCTCGATCCCCCACTGGGCGCAGCCGCAGGCGCAGCGAGCG
AAAGATGAGATCCCGTGGTCGATCAGAG--------------GAATTTTTCAGCCGCAGACCCCACCCGCAGCCACTTCT
TCAGACCTCACACACGCTGAA-------GCAGCACCCGCCCGGCCCCTCCCTC-----------CT---CTCCTATCTTC
ACCAGCACACAGCATACACATGCTCCCTCTCTCTCACACACACTCCTTTGTCCTGAGGAAGTAGAGTGATAAAGAACACA
A-------------GTGTCCTGTAGGCCGTAGGTGTATACACACACAGACAGATACTCCAAAAGGGAGGAGGAGAGAGAG
GAGGCTACCTACGTAGCAAGCTATGCTAAC----CTAGGGTAGGCTCTAGAGACTAGAGAGAGGGTAGCTAGCTAGCTAG
GGTAGCTAGGTGGTAGTAGGGTAGAGTCTTTTGCGTTTTCTTTTCTTTACTCTTGGATGCCCCTTCCTTCGCTGGGAAGA
GAGATTCTTCTTTAAAGTGGATGGAGAGGAGGGGTTTCCGGTCCGTCCGTAGGCTCACTCAGCTCAGCCGCTAGCCGCTA
CGCTACCTCACTCTCAGAGGGAGCATCTTCGTCTGCTCTTGCGCCTTTTCCGCTCGC-------------------CTTT
GGAGCTAAGCTTAGCCTTGATAGGTGCAGGTGCAGCAGCT----AGCTAGGGAGGGGGAGCTACTGCCCCC-GCCAGCAA
GCGTGGCGTCGTCGGGGCGGCGCTTCCCATCGGTCTCCGCGGCCTACGCGGACTGGATCGCGTCGGCCGGCGGCGACGAC
CTCTCGCTCGGCTTCAATGCCGCGGGCGCGTCCGCCGCCGGGCTCTGGGCCCCCGCCTCGCGCCAGTCCGCCGCTCTCAA
CTACGGGATAGCGGCGGCCAACGGTGATGTCGGCATGGTCGTCCTCGCCCCCGCCTCCTCCTTCCACCACCAGAGGGCCG
CTGCTGCTGCCGCCGCGGCGGCCGACGGCGCCGACCAAGGGTTCGCGCTCCTCTCCGCGGGCCAGTGCGGGCTCGCCGAC
CCTGGCGCTCCCAAGTCCGGCAGCGCCATCCAGTTCTGGCAATCGCACTCGCAGCCCCCCGCGACGCCGCCCGCGGTTGC
CCCCGCCGACAAGAAGCAGGTGGCCTCCGCGGTGGACTACGGCGGCGTCTCCTCCGGATCCGGCGGCTCCACCACGTGCA
GCGACTGCGGCAACCAGGCGAAGAAGGACTGCCCTCACCAGCGATGCCGGACGTGCTGCAAGAGCCGCGGCTTCGACTGC
ACCACGCACGTCAGGAGCACCTGGATCCCGGCCGCCCGGCGCCGCGAGAAGCACCCGCTCGGCGGCGACCTTTCCCCTCC
CGCCGCTCCTGCCACGGCGGCCACCAAGAAACCGCGGTTCCACTCGTCCCAGACCACGACCACGACCACCACCTCTCGCA
CCTCCACCTCCAACGGCACCTCCTCGAGCCAACAAGGTGATCGACCAGCACAGACGCACGCACGCACATCCCAAGTCTCA
GCA-------CACATAATTCAAGAAACTTGGACACTAATCACATCTTCTAT-CCCATCCTCTGCAGACGCGCCGTTCAGG
GACAGCCTGCCGCGGCACGTGCGCGCGCCGGCGGTGTTCCGGTGCGTGCGGGTGACCTCCGTCGACGACGGCGCGGACGA
GTTCGCGTACCAGGCGGCGGTGAGCATCAACGGCCACATGTTCAGGGGGTTCCTCTACGACCAGGGCGCCGACAACGGCC
GCACCAGCAACGACGAGCCCAGCCACGCGCACGCGGCCGCAGTGCGTAGCATCTCCGACCTCCACCTCGGCAACGCCTCC
GCGGTGCCGCCGGACATGTACAACACCGTCAGCGGGGCGCTCATTCTCGGCGGGATGGGCTATGGTAACACCATGAACTG
AAAACTGTTACTCGTAGTGC---TAGCTAGTAAGCCTGGTGCAATAATGGTAG----CCATCTTGTTACTACATGTCACC
TCATTTCTTTCATCTCACATCACCAGTAGTGGTACTACCCTGTCTTCCATTTTGCTGCTGCATGCTGTGTGCCAGTGCCA
CAGCTAACTTCCAAGTCTTTTGATAGTAGTAGAAGTTGGAAAGAAAATGAAAGGAAAAGCAGTCAGTATTTCCAAGGTAA
ACTTGCTGTACAACATGCTACTATCTGATTTCTC-TATGTGGCTGATGCTGTTGTGTTACCATTTTTTTTAACTTAACAT
GTTTGCATATGTTGGGAACTGCAAATCATATACAGTTAAAATCACCATGTTCTGTGGGTCCTT---TGGAGTAAAT-TTT
TTAGACAAAACATTATTTGTAGTAATCACTTGACGCCATGGAGAGGTTGATGGTAGTAGTACTATTGTTAA-TTTGACAG
CTGAAAAGTTTGACTCTTTGATGCTCTTCCTAGTTCCCACGCCATCGACCACTTCATTTCATCCTCTTGCGTGCTATGGC
TTCCGAATT---GCCAATCTTGTTTACCTTGTTCAGCTAG---TA----GCACGTATACTCTACTATCTCTTTCCCAAAT
TTACGGGGTTGGTAGGAATAGCTAGA-CATGGGTTGGATTCTTACTTGCTTTGTATGTGCTGTTAAGCATCTTATCGGTG
CATTGGAACTTGTAGCGGGAAAAAGAGAGCCAATGTGCAATGCATGTGGTGATAAGAATTCTTTTGCCCTCTTAAAATAA
CATATGCAGCTGATACTCTAGTAAATTACTTGGGTCACGATCATGGAAGCCAATAATGGTACAGTGCTCCATACATTACC
CTTGGCCTGTTTGCTAG---TAGTAGCTGCTTGTTAACAATATGATGAAGGGACATCTTCACTTAATCTTTTGTTGCGAG
CCCCCATATTTATTCCCCCTGCTGCCGGATCCCAAATCCAGAATGAAAACATGCACCCCTCTGTTTCATAATATAAGATG
TTTTTTCAAGCTAACATGGTTTATAAAAATA-----TCTTATATTATGAGACGGATGAAGT-------------------
------------------------------------------------ACTAAGGAGTGGCCATATCTCAATGAACACAG
GACTAAATTTGTCTCATCAAGTACAGTGATAGAGATATATTTCCGATCAAGATTTTTCATCCATTCCATACTTGTAAGAA
TCTCTAACTTTGATCAGATTGTTCTTAGCGGCGAGAAATAACAATATCATATTTTTATGGGATTTCTTTTCTCAATTTTT
TTTAATGAGATTTGTTAGTTTCAGTCTGATTTTGTCTTTCTTCATTCCTAAGCAGGCCAAGTTATTACACAACAAAGTCA
TATTGTGCTGTGGATCTATTGACTCTAAAGCTTGCATAAAGAAGTTTTCTGTAACTTCAG-TTTAGGAGTGCAAATTACA
AATGATTTATGAAAAT-CACTATACCTAATTTTTCTTGCATGAGAAACCAACGATGTTTAGATCTGTATCGTAAGTTTAT
GGGTGTACCGAAGCACTGCTCTTTGCAGATTTAAAGTACTTCTAGGATGTCTACTATGTATTGAAAAATATATCAGTTCG
GTTCCTCTAAGATTGGCAGGTGATCATTGGATCAAAGGAAATAATAAATAGATAAAGAACCACGGGGTTATTTTTTTGGC
TATTTCCACCTTGTTGTGTCATGTCAAATGTGAGTTTGGTCGATTTGCTTGAGCCACCGCGGCTTGAGGACGAAAATTAT
GCTGTGGTAGCTGGTCGAAGGGGTTGGGTAAG
>chr1B_1
GGCAGCGGCAGAGCAGGAGGGAGAAG--AGAA----GGGAGCCGGGCGGGCGCGTCAGTGAAAGCTGCCAG------GCT
GCGCTGCGTGCCCGGTGC----GGTGCCCCCACAAGAAGTCTCGATCCCCCACTGGGCGCAG------GCGCAGCGAGCG
AAAGATGAGATCCCGTGGCCGATCGCAGCCGGTCGCGCAGAGGAATTTTTCAGCCGCAGACCCCACCCGCAGCCACTTCT
TCAGACCTCACACACGCTGAACGCTGAAGCAGCACCCGGCCGGCCCCTCTCTC-----------CTTCTCTCCTATCTTC
ACGAGCACACAGCATACACACGCTCTCTCCCTCTCAC-----GTTGTCCTGTGGA---AAGTAGAGGGATAAAGAACACA
AGCGGCTAGCCCCTGTGTCCTGTAGGCCGTAGGCGTACACAC------ACAGATACTCCAAAAGGGAGGAGAGAGAAGG-
--------CTACCTAGAAAGCTATGCTAACCTAGCTAGGGTAGGCTGTAGAGACTAGAGAG-----------------AG
GGTAGCTAGGTGGTAGTAGGGTAGAGTCTTTTGTGTTTTCTTTTCTTTACTCTTGGATGCCCCTTCCTTCGCTGAGAAGA
GAGATTCTTCTTTAAAGTGGATGGAGAGGAGGGGTT-----TCCATCCGTAGGCTCACTCAACTCAGCTGCTAGCCGCTA
CTCCTCAGA----------GGAGCATCTTCGTCTGCTCTTGCGCCTTTTCTGCTCGCTCGCTGCCTGCCTGC----CTTT
GGAGCTAAGCTTAGCCTAGGTAGGCGTAGCGGCT--AGCT----AGCCAGGGAGGGGAAGCTACTGCCCCCAGCCAGCAA
GCGTGGCGTCGTCGGGGAGGCGCTTCCCATCGGTCTCCGCGGCCTACGCGGACTGGATCGCGTCGGCCGGCGGCGACGAC
CTCTCGCTCGGCTTCAATGCCGCTGGCGCGTCCGCCAACGGCCTTTGGGGACCAGCCTCGCGCCAGTCCGCCGCGCTCAA
CTACGGGATAACGG---CTGCTGGTGATGTCGGCATGGTCGTCCTCGCCCCCGCCTCCTCCTTCCACCACCAGAGGGCCG
CTGCTGCTGCCGCCGCGGCGG---ACGCCGCCGACCAAGGGTTCGCCCTCCTCTCCGCGGGGCAGTGCGGGCTCGCCGAC
CCTGGCGCTCCCAAGTCCGGCAGCGCCATCCAATTCTGGCAGTCGCACTCGCAGCCCCACACGACGCCGCCCGCCGCTGC
CCCCGCCGACAAGAAGCAGGTCGTCTCCGCGGTGGACTACGGCGGCGTCTCCTCCGGATCCGGCGGCTCCACCACGTGCA
ACGACTGCGGCAACCAGGCGAAGAAAGACTGCCCCCACCAGCGCTGCCGGACGTGCTGCAAGAGCCGCGGCTTCGACTGC
ACGACGCACGTCAGGAGCACCTGGATCCCGGCCGCCCGGCGCCGCGAGAAGCACCCGCTCGGCGGCGACCTTTCCCCTCC
CGCCGCTCCTGCCACGGCGGCCACCAAGAAACCGCGGTTCCACTCCTCCCAGACCACCACCACCACCACCACCTCTCGCA
CCTCCACCTCCAACGGCACCTCCTCGAGCCAACAAGGTGATCGACCAGCACAGACGCAC--------ATCCCAAGTCTCA
GCAGTCAGCACACATAATTCAAGAAACTTGCACACTAATCACATCTTCTAT-CCCATCCTCTGCAGACGCGCCGTTCAGG
GACAGCCTGCCGCGGCACGTGCGCGCGCCGGCGGTGTTCCGGTGCGTGCGGGTGACCTCCGTCGACGACGGCGCGGACGA
GTTCGCGTACCAGGCGGCGGTGAGCATCAACGGCCACATGTTCAGGGGGTTTCTCTACGACCAGGGCGCCGACAACGGCC
GCACCAGCAACGACGAGCCCAGCCACGCGCACGCGGCCGCCGTGCGTAGCATCTCCGACCTCCACCTCGGCAACGCCTCC
ACGGTGCCGCCGGACATGTACAACACCGTCAGCGGGGCGCTCATTCTCGGCGGGATGGGCTATGGTAACACCATGAACTG
AAAACTAT------TAGTGC---TAGCTAGTAAGCCTGGTGCAATAATGGTAGACATCCATCTTGTTACTACATGTCACC
TCATTTCTTTCATCTCA-ATCACCAGTAGTGGTACTACCCTGTCTTCCATTTTGCTGCTGCATGCTGTGTGCCGGTGCCA
CAGCTAACTTCCAAGTCTTTTGT---TACTAGAGGTTGGAAAGAAAATGAAAGGAAAACCAATCAGTATTTCCAAGGTAA
ACTG-------------------------------------------GCTGTTGTGTTACCA--TTTTTTTACTGAACAT
GTTTGCATATGTTGGGAACTGCAAATTATATACAGTTAAAATCACCATGGTCTGTGGGTCCTTCTTTAGAGTAATT-TTT
TTAGACAAAACCTTATTTGTAGTAATCACTTGACGCCATGGAGAGGTTGATGGTAGC---ACTATTGTTAA-TTTGGCAG
CTGAAAAGTTTGACTCTTTGATGCTCTTCCTAGTCCCCACGCTATCGACCACTTCACTTCATCCTCTTGCGTGCTATGGC
TTCCGAATT---GCCAGTCTTGTTTACCTTGTTCAGCTAG---TAGCACGTATACT-------CTATCGCTTCCCCAAAT
TTACGGGGTTGGTAGGA-TAGCAAGACCATGGGTTGGATTCTTACTTGCTTTGTATGTGCTGTTAAGCATCTTATCCGTG
CATTGGAACTTGTAGCGGGAAAAAGAGAGCCAATGTGCAATGCATGTGGTGATAAGAATTCTCTTGCCCTCTTAAAATAA
--TATGCAGCTGA-----TAGTAAATTACTTGGGTCACGATCGTGGAAGCCAATAATGGTACAGTGCTCCATACATTAGC
CTTGGCCTGTTTGCTAGTCCTAGTAGCTGCTTGTTAACAATATGATGAAGGGACATCTTCTCTTAAACTTTTGTTGCGAG
CCCCCATATTTATTCCCCCTGCTGCCGGATCCCAAATCCAGAATGAAAACATGTACCCCTTTTTTCC--------AGGTG
TTTTTCCGAGCTAACATATTTTGCAAAAATAAAACGTCTTATATTGTGGGACGGATGAAGT-------------------
------------------------------------------------ACTAAGGAGTGGCCATATCTCAATCAACACAG
AACTAAATCTGTCTCCGCAAGTACACTTATAGAGATATATTTCCGACCAAGATTTCGCATCCATTCCATACTTGTAA-AA
TCTCTAATTTTGATCAGATTGTTCTTAGCTGCGAGAAATAAAAAGATCATATTTTT------------------------
----ATGAGATTTGTTAGTTTCAGTCTGTTTTTTT-TTTCTTCATTCGTAAGCAGGCCAAGTTATCACACAATAAAGTCA
TCTTGTGCTGTGGATCTGTTCTACAACTTC----------------------------AGTTTTAGGAGTGCAAATTACA
AATGATTTCTGAAAATGG--TACACCTAATTTTTCTTCCATGGGGAACCAACGATGTTTAGATCTGTATCGTAAGTTTAT
GGGTGTACCGAAGCACTGCTCTTTGTAGATTTTAAGCACTTCTAGAATGTCTACTATGTATTGAAAAATATATCAGTTA-
---------------------------------------------AAATAGATAAAGAACCACAGGGTTAATTTGGTGGC
TATTTCCACCTTGTTGTGTCATGTCAAATGTGAGTTTGGTCGATTTGCTTGAGCCACCGCAACTTGAGGACGAAATTTAT
GCTGCGGTAGCTGGTCGAAGGGGTTGGGTAAG
>chr5D_2232
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-------GTACAACATGCTACTATCTGGTTTTTC-TATGTGGCTGATGCTATTGTGTT-CCA--TTTTTTTACTGAACAT
GTTTGCATATGTTGGGAACTGCAAATCATATACAGTTCAAATCACCATGTTCCGTGGGTTCTTCTTTGGAGTAATT-TTT
TTAGACAAAACATTATTTGTAGTAAGCACTTGACGCCATGGAGAGGTTGATAGTAGT---ACCATTGTTAA-TTTGGCAG
CTGAAAAGTTTGACTCTTT-ATGCTCTCCCTAGTCCCCACGCCATCGACCACTTAACTTCATCCTCTTGCGTGCTATGGC
TTGCGAACTGCCGCCAGTCTTGTTTACCTTGTTCAGCTAG---GA----GTATACT-------CTATCTCTTTCCCAAAT
TTACGGGGTTGGTAGGAATAGCAAGGCCATGGGTTGGATTCTTACTTGATTTGTATGTGTTGTTAAGCATCTTATCCATG
CATTGGAACTTGTAGCGGGAAAAAGAGAGCCAATGTGCAATGCATGTGGTGATAACAATTCTCTTGCCCTCTT-------
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>chr4D_2232
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-------GTACAACATGCTACTATGTGGTTCTTC-TATGTGGCTGATGTTGTTGTGTTACCA--TTTTTTTACTGAACAT
GTTTGCATATGCTGGGAACTGCAAATCATATACAGTTCAAATCACCATGTTCCGTGGGTTCTTCTTTGGAGTAATT-TTT
TTAGACAAAACAATATTAGTAGTAAGCACTTGACGCCATGGAGAGGTTGATAGTAGTA---CCAATGTTAA-TTTGGCAG
ATGAAAAGTTTGACTCTTT-ATGCTCTCCCTAGTCCCCACGCCATCGACCAATTCACTTCATCCTCTTGCGTGCTATGGC
TTCCGAACTGCCGCCAGTCTTGTTTACCTTGTTCAGCTAG---GA----GTATACT-------CTATCTCTTTCCCAAAT
TTACGGGGTTGGTAGGAATAGCAAGGCCATGGGTTGGACTCTTACTTCCTTTTTATGTGCTGTTAAGCATCTTATCCATG
CATTGGAACTTGTAGCAGGAAAAAGAGAGCCAATGTGCAAGGCATGTGGTGATAACAATTCTCTTGCCCTCTT-------
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>SNPs
---------------------SSS-SSS----------------------------------------------------
------------------SSSS----------------------------------------------------------
--------------------------------------------------------------------------------
---SS-SSS-SSSS---------------------------------------SSSSSSSSSSS-------------S--
------------S--------------------------S-S-------S------------------------------
-------------------------S------------------------------------------------------
S---------------------------------------------------------------------S---------
--------------------------S-----------------------------------------------------
---------------------------------------------S----------------------------------
------------------------------------------------------------------------SSSS----
----------------------------------------SSSS----------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------S-----
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
------------------------------------------------------------------------------S-
-----------S--S---------------------S-------------SS----------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--S-----------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------SSS-------------------------S-------------------------------
-------------------------------------------------------------------------S------
----------------------------------------------------S---------------------------
----------------S----S--S---S-----S----------------------------------S-S--------
----------------------------------S-------------------S---------------------S---
-------------S---------------------------------------------------------S--------
--------------------------------S-----------------------------------------------
----------------------------------------SSS-------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------SS-S-SS----------------S------------
------------------S---S-S-SS-SS-SSSS--S-----SS-SS-S-S--SS----SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
--------------S-----------------------------------------------------------------
--------------------S--------S----------------S------------SS-------------------
--------------------------------------------------------------------------------
----------S-------------S----S-------------S-------------S----------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
----S---------------------------------------------------------S-----------------
-----------------------------------------------------S--------------------------
--------------------------------
>forward_303
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-------------------------------------------CCCCTCTCTCCTTCTCTGCT-----------------
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>reverse_2234
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-------------------------------------------------------------------------TGTGCCA
CAGCTAACTTCCA-------------------------------------------------------------------
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>forward_370
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------------------------------CTCTCACACTCCGTTGTCCC------------------------------
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>reverse_2355
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTATGTGGCTGATGCTGTTGTG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>forward_1884
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CATCAACGGCCACATGTTCC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>reverse_3244
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TGAGGACTAAGGAGTGGCCA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
