>input_sequence_43936
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------ATGGATCTGGTGAACGGCGCGCTCAACTGGGCGGCGATGCCCGCCATGGTCGCCTCCCTCCT
GCTCTTCTACCCGCCCTACTACCTCTTCAAGCTCTGCTACTCCTTCCTCTCCTACCTCTTCCCCGACGACCTCAAGCGCA
AGGTCGTCCTCATCACCGGCGCCTCCTCCGGCATCGGCGAGGTCAGCACACCACATCTTC----CTCTG-----------
-CTTCTTCTTGCTGTTACTGAACCAACCAGATGCTTTTGGTCCAACTTTGCTCTGCTTCTTTCTTATGCTACTCTGCTCT
TCTACTTGTCATACTAGTACTGATTGAATATACATGTTCGCTCACATGAACATATTAATTGTTAACTCCAAAC-------
------TTGTGCATGCAGCAACTGGCCTACCAGTACGCCACCAAGGGGGCATGCCTTGCCCTGCTCGCCAGGAGGGAGTG
GAGCCTGCGGCAGGTCGCCGACCGCGCCTTCGAGCTCGGCGCGCCCGACGTCATCATTCTCCCCGGCGACGTCGCAGACC
CCGACGACTGCAACAGATTTGTTCAGGCCACAATCGACCACTACGGCCGATGTAAGCCAGTTCCT----GTTACAGCTAA
CTTGGTTTAGTAACA-TATTTGGGTATC---------------------------------TAGTTGACATTATTTACAT
G--TGTGTTGA------------TTAATTGCAGTGGACCATCTTGTGTGCAACGCTGGAATTGCGAGCGTGGGCGCTTTT
CAGGAGATTCCTGACGTTACTAACTACAGCCCGCAGCTTGTAAGTGACGTCCATGA----TTCATTGTGCCTTGATTCAG
CAATCGCAATCGTTGTTGTAACAGAGACTCCCATGAGCGTCAAATTAAAGTAACATTTTGTTTCCAGGATGTCAACTTCT
GGGGTGCAGTTCAGTCCACTTTTGCTGCTCTGCCCCATCTTAAAAGGACCCGAGGGAGGATCGTGGTCACCGCCTCCGCA
ACCGGATGGAACCCTGTTCCGCGAATGGTTTTCTATAATG----------------------------------------
--------------------TAACCACCTAACTTGGTTTATTTCATCATTTAAG--TGAAGGAATCGGTTACGATGAGTC
GAGTCGTTGGTACTACTACT------------CATGTTTGT-----TTCTGTTTTAGGCCGCCAATGCCGCACTGATTAA
CTTCTTCGAGACCCTACGGTCGGAGCTTGGTAGTGAAGTTGGCATCACAATAGTGACGCCTGGGTGGATCGAGTCCGAGA
TGTCCAAAGGCAAGTTTCTCAAGGAGCACGGCGGCGTGGAGGTTGATCAAGAATATCGAGATGTGAGGACACTTACCACC
GT------TCACACTTTTCTACGTTTTGGCTAAATTTCTGTTACAACAAGCAAACA-GTTTTAACATAAA----AATTTA
TTGTGATCATCTGCCATCTGGAGTTATGGGCACAAGAAGATATGGAAAATAGTTATCAAATTAATTAAGTTGTCATGTAA
TACTTGCACCAAGT----TCAATGGCATCTATATATTATCTGAC----------------CATGTGGCCCTTTGCTTATT
TTCTAGGCCCAAATCGGTCTCTTCCCGGTGGAGTACGCGAAGAACTGCGCGAGGGCCATGGTGCAGGCAGCTCGCCAAGG
TGACCGTTACCTCACCGTGCCGTCATGGTTCGGAACAATGTACCTGTGGAGGGTGTTTGCGCCGGAGGTCGTCGAGTTCT
GCTACCGCCTCCTGTATATGCACGGCCATGGCGGTGGCGACCAGACCGACGCGCCGAGCAAGACGATGGCCCAGGGTGGC
GGGAAGCAGATGCTGTACCCCTCCTCGCTGCGCTCTTCGGACGTCAAAAACGACTAG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>chr5D_1_TraesCS5D01G565600
GAGGATCTGCCTGTGCCTCGATGAGATCGTTTGGCAGGTAAGCTTGGATGTAATAATTTTTTTGCCATGTACTAGCAGTT
AAGCATCGCCGGGGAGAGACTTATTTGGTACTCTCGGACAGTAATGGATACAAACCTAGTGCTGTCGGAGTGATAACACC
AGTATGTGTCCGGTGGCTGTCCGTTATGAATTCCTTCATCCTTCCTACTCCGTATGTGATCCATAGTGAAATCTCTCCAA
AGACTTATATTTAGGAACGGAGGGAGTAGTTGTCTGGTGTATGTTGTTGTTGATGATAAATATCCTGAGCAGCTGTTGAT
GTGGTGCACTGTTTGTTGTTGTGGATGATGCA----TGCAGGGGTTGCTGGAGAACACGGAGAAGGACAGGGTCCGGAGG
CTCATCAGGCTGAAGCCGCCCGTGGAGCCATGATTTTTTCCAGTTGAGGGATGGATCTTTCCTGTGTATGTATCGCTTTT
TTTTAGAGCCTTGACGATAACTCTGTCCATGACTGCTGTGTAC----------------------------TACAACAAG
----TTGATGGGAATGTGATTTGGTGTATGGTTTCAATTTCATTTCATGGCATATATGTGATTCGTATGTAGCCCAGTAT
TTTTTTTTTCCCTTCTGTTTGGAGTC------------------------------------------------------
----------------------------------TTTTTTTTTCTTTTGAGAAACTTCTGTTTGGAGTCAGAGAAGGGGA
CAGAAGGAAAGTTTGGAACCAGCAAAAACATAATCACGACGTGAAGGTCATGGTGACCACCG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CCTGCCAGGTGGGACCCACCCACCGCCGCGCCGAGGCACGGGACCCACATCCAGTCCAGAAGGAGC
-CTCCTTCCTTCCACGTTTCAGCACCA-GGGGT-ACGTGTCGTCAAGCCGAGCTCCCACCCGTCCACGCAC---------
--GCATGCGCCGAGCGGCAGAGCACCACATCATCAACCCGTCCCCATCCACGCACACTCAAGCTTCTTCTGTGTCTTCCA
GCTTG---------------------------GGCAGCAGGCAGGCGTGTGAGCTCGAATCCAAGA--------------
-----GGC--CGGAGACGATGGATCTGGTGAACGGCGCGCTCAACTGGGCGGCGATGCCCGCCATGGTCGCCTCCCTCCT
GCTCTTCTACCCGCCCTACTACCTCTTCAAGCTCTGCTACTCCTTCCTCTCCTACCTCTTCCCCGACGACCTCAAGCGCA
AGGTCGTCCTCATCACCGGCGCCTCCTCCGGCATCGGCGAGGTCAGCACACCACATCTTC----CTCTG-----------
-CTTCTTCTTGCTGTTACTGAACCAACCAGATGCTTTTGGTCCAACTTTGCTCTGCTTCTTTCTTATGCTACTCTGCTCT
TCTACTTGTCATACTAGTACTGATTGAATATACATGTTCGCTCACATGAACATATTAATTGTTAACTCCAAAC-------
------TTGTGCATGCAGCAACTGGCCTACCAGTACGCCACCAAGGGGGCATGCCTTGCCCTGCTCGCCAGGAGGGAGTG
GAGCCTGCGGCAGGTCGCCGACCGCGCCTTCGAGCTCGGCGCGCCCGACGTCATCATTCTCCCCGGCGACGTCGCAGACC
CCGACGACTGCAACAGATTTGTTCAGGCCACAATCGACCACTACGGCCGATGTAAGCCAGTTCCT----GTTACAGCTAA
CTTGGTTTAGTAACA-TATTTGGGTATC---------------------------------TAGTTGACATTATTTACAT
G--TGTGTTGA------------TTAATTGCAGTGGACCATCTTGTGTGCAACGCTGGAATTGCGAGCGTGGGCGCTTTT
CAGGAGATTCCTGACGTTACTAACTACAGCCCGCAGCTTGTAAGTGACGTCCATGA----TTCATTGTGCCTTGATTCAG
CAATCGCAATCGTTGTTGTAACAGAGACTCCCATGAGCGTCAAATTAAAGTAACATTTTGTTTCCAGGATGTCAACTTCT
GGGGTGCAGTTCAGTCCACTTTTGCTGCTCTGCCCCATCTTAAAAGGACCCGAGGGAGGATCGTGGTCACCGCCTCCGCA
ACCGGATGGAACCCTGTTCCGCGAATGGTTTTCTATAATG----------------------------------------
--------------------TAACCACCTAACTTGGTTTATTTCATCATTTAAG--TGAAGGAATCGGTTACGATGAGTC
GAGTCGTTGGTACTACTACT------------CATGTTTGT-----TTCTGTTTTAGGCCGCCAATGCCGCACTGATTAA
CTTCTTCGAGACCCTACGGTCGGAGCTTGGTAGTGAAGTTGGCATCACAATAGTGACGCCTGGGTGGATCGAGTCCGAGA
TGTCCAAAGGCAAGTTTCTCAAGGAGCACGGCGGCGTGGAGGTTGATCAAGAATATCGAGATGTGAGGACACTTACCACC
GT------TCACACTTTTCTACGTTTTGGCTAAATTTCTGTTACAACAAGCAAACA-GTTTTAACATAAA----AATTTA
TTGTGATCATCTGCCATCTGGAGTTATGGGCACAAGAAGATATGGAAAATAGTTATCAAATTAATTAAGTTGTCATGTAA
TACTTGCACCAAGT----TCAATGGCATCTATATATTATCTGAC----------------CATGTGGCCCTTTGCTTATT
TTCTAGGCCCAAATCGGTCTCTTCCCGGTGGAGTACGCGAAGAACTGCGCGAGGGCCATGGTGCAGGCAGCTCGCCAAGG
TGACCGTTACCTCACCGTGCCGTCATGGTTCGGAACAATGTACCTGTGGAGGGTGTTTGCGCCGGAGGTCGTCGAGTTCT
GCTACCGCCTCCTGTATATGCACGGCCATGGCGGTGGCGACCAGACCGACGCGCCGAGCAAGACGATGGCCCAGGGTGGC
GGGAAGCAGATGCTGTACCCCTCCTCGCTGCGCTCTTCGGACGTCAAAAACGACTAGAAACTTACTATAGTTCGCATCCT
TTGATCGAGGACGTGGATCCTGGTG----------TGCAGGCTAGTTTGTTCTCTACTAA----GCTTTAGGTGTGGATG
CTACTGCTGGTTAGCTAGTTTGTAATCCCGAA---------TAAGCTGTGTTCTGTGTTTTGTAATATTAGTGTTGTGTT
GTGTGCTTGTAATATTAGTTCTGTGTTTGAGACTGCATGTCGATCGACTCGTTGGTGTCTCTGGAATAATGCTTTGCACT
ACTTT-------CCCTTTCTCCTTGGAACTTCTTATATCAACTTGTTAATTCATTACTACTCCCTCTGTTCCTAAATATT
TGTCTTTCTAGACATTTTAAATGATTTACCACATATGGATGTATGTAGATATATTTTAGAGTGTAGATTCACTCATTTTG
CTCCTAGTCACTTGTTGAAATGTTTATAAAGACAAATATTTAAGATCGGAGGAAGTAGGACCTAGCGGTAGCGCGGGTCG
TAGGCCTGGTAGTAGCGTGGCCGCGCTGTTACAACTAACTGTGCTACTACTACGATTGTTACAACTAACTTGTAACAGCG
CGGCCACTACGGCGTTACGACTAACTTCGACTAACTTTTACTACTGCTGCGGGGTTACAACTAACTTGGCCGCGCTACTA
TTACGACATTACAACTATTCCTTCCGTTCATTTTTATAAGACGTTTCAGACAGCAGCAGGCATTTTTATAAGACGTTTCA
GACAGCAGCAGATATTGAACTGTTTTGACTGCTGTCTAAAATGGCTACGGCGTCTTGTAAAAGTAAACAGAGGGAGTAAC
TTTTAGCAGTAGCGTGTGCTGGCCCGTGCTATTTGATAACAGTAGCGCGTTTTATGAAACCGATGATAAGCCTAATAGCG
CGTTTTATGAAACCGATGATAGGCCTAATAGCGCGTTTTATGAAACCGATGATAGGCCTGGCAGTAGCGCGGCCGCGCTA
CCGCTACAGCGTTATAACTAACTTTTAGCAGTAGCGCGTGTTGGCCC
>chr5B_306
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGAGCTGCTGTTGAT
GTGGTGT--TGTT----GTTATGGATGATGCATGCGTGCAGGGGTTGCTGGAGAACACGGAGAAGGACAGGGTTCGGAGG
CTGATCAGGCTGAAGCCCCCCGTGGAGCCATGATTTTTG-CAGTTGAGAGATGGATCCTTGCTGTGTATGTATCGCTTTG
--TTAGAGCCTTGATGATAACTCACCAACACTGGGCACTTGTGTGATTCTTCTGTCCTGCC-TGTACTGTGTACAACAAT
TTCTTTGATGGAAATGTGATTTGGTCAGATGGTTTCAG----TTTCATGGCAT----GTGATTTGTAA-TAACCAAGTAC
AAATTCTCATCAGTTCATTGT-CCTGCTCATGCACATGAAAAAAATGTTTGCATGAAATAAAAAGCCTTCACACACACAC
AAACACGAGTGTACAGTTAAATAAACTGCAACAGTTTTTTTGTCTGAAGTCAAACTTTGTACTTTATAAAAAAATATCAA
CATTCACACAAGTAGATGTGTCATGAATTTACTTTTTATATTGTATACTCCCTCCGTTTGAAATTACTTATCACAAAAAT
TGATAAAAATGGATGTATCTACAATTAAAATACATCTAGATACATTCATTTCTTGGATGAGTAATTCTGAACGGAGAGAG
TATAACTTTAGTACTTGTAGGTGTTGGCACTTTTTTTTATATAAATATGGTTAAATTTTAAAAAGTTTGACTGCAGATAA
TTCTTATATGTAAGAAATGTAGAGTTAAAAAGGAGCAGCGGGAGAGCCACAAAAACAATATTTCCTTCCACAAGGTGAGA
GAGCCACCACCTCACCTGCCAGGTGGGACCCGCCCACCGCATCGAGAGCTCTCCGCTCGGTCCC----TCCAGAAGGACC
TTTCCTCCCTTCCACGTGTCAACACCA-GAGATGACGTGTCATCAAGTCAAGCTCCCACCCGTCCATCCCG------TGG
ATGCATGCGCCGAGCGGCAGAGCACACTT-------------------------------------TTCTGTAGCCACCT
CGCTTCTCATC--TTCATCTTTCAGGCCGCTTGGTCAGAGT-AGGTGTGTGAGCCGAGAGAGGA------AGAGACCTGC
CGGCCGGAGACGGAGACGATGGATCTGGTGAACGGCGCGCTCAACTGGGCGGCGATGCCCGCCATGGTCGCCGCCCTCCT
GCTCTTCTACCCGCCATACTACCTCTTCAAGCTCTGCTACTCCTTCCTCTCCTACCTCTTCCCCGACGACCTCAAGCGCA
AGGTCGTCCTCATCACCGGCGCCTCCTCCGGCATCGGCGAGGTCACTAGTCAACATCTTC----CTCCTCTGCTTCTTCT
TCTTCTTCTTCTTGTTACTGAACCAACCAGATGCTTTTGCTCCAACTTTGCTCTGCTTCTTTCTTATGCTGCTCTGCTCT
TCATGTTAATTG------------------------------------------TTAACTCCAAACAACTTAATTAGGAT
CTTCTCTTGTGCATGCAGCAACTGGCCTACCAGTACGCCGCCAAGGGGGCATGCCTCGCCCTGGTCGCCAGGAAGGAATG
GAGCCTCCGGCAGGTCGCCGACCGCGCCTTCGACCTCGGTGCGCCGGACGTCATCATTCTCCCCGGCGACGTCGCAGACC
CCGACGACTGCAACAGATTCGTTCAGGCCACAGTCGACCACTACGGACGATGTAAGTCGCTTCCT----GTTACAGCCAA
CTTGGTTTAACATATTTATTTGGGTATC---------------------------------TACTTGACATCATCAATCT
ACACTTGTGCTGATCAATTTAATTTAATTGCAGTGGACCATCTTGTGTGCAACGCTGGCATTGCGAGCGTGGGCGCCTTT
CAGGAGATCCCCGATGTCACTAACTACAGCTCGCAGCTTGTAAGTGACACAGCATGACTCTTCATTATGCCTTGATTCTA
CCTGTCA-----------------AGGCACCCACGAGTGTCA----AAAGTAACATTTTGTTACCAGGATGTCAACTTCT
GGGGCGCAGTTCAGTCCACTTCTGCTGCCCTGCCCCATCTTAAAAGGACCCGAGGGAGGATCGTGGTCACCGCCTCCGCG
ACCGGATGGAACCCCGTTCCGCGCATGATTTTCTATAATG----------------------------------------
--------------------TAAT-AACTAACTTGGTTCATTTCATCATTTATAAATGAAGGAACCGGTTATGATA----
-----GTCGATAGTAGTACT------------GATGTTTGTTCTCTTTCTGTTTTAGGCCGCCAATGCCGCACTGATAAA
CTTCTTCGAGACGCTGCGGTCGGAGCTTGGCAGTGAAGTTGGCATCACAATAGTGACGCCCGGGTGGATCGAGTCCGAGA
TGTCCAAAGGCAAGTTTCTCAAGGAGCACGGCGGCGTGGAGGTTGATCAAGAATATCGAGATGTGAGGACACTTGCTACC
GT------TCACACTTTTCTACGTTTTGCCTAAATTTCTGTTACAACAATCAAACATGTTTTAACATAAAAATCAAGTGA
TTGTGATCATCTGCCATCCGGAGTTATGGGCGCAAGAAGATATGGAAAATAGTTATCAAATTAA----GTTGCCATGTAA
TACTTGCACCAAGT----TGAATGGCATCTATATATTATCTGAC----------------CATGTGGCCCTT-GCTTATT
TCCTAGGCTCAAATCGGTCTCTTCCCGGTGGAGTACGCGAAGAACTGCGCGAGGGCCATGGTGCAGGCAGCTCGCCAAGG
TGACCGTTACCTCACCGTGCCGTCATGGTTCGGAACAATGTACCTGTGGAGGGTGTTTGCGCCGGAGGTCGTCGAGTTCT
GCTACCGCCTCCTGTACATGCACCGCCATGGCGGTGGCGACCAGACCGATGCGCCGAGCAAGACGATGGCCCAGGGTGGC
GGGAAGCAGATGCTGTACCCCTCCTCGCTGCGCTCTTCGGACGTCAAAAGCGACTAGAAACT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr4A_306
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGAGCTGCTGTTGAT
GTGGTGCTCTGTT----GTTGCGGATGG----TGCGTGCAGGGGTTGCTGGAGAACACGGAGAAGGACAGGGTTCGGAGG
CTGATCAGGCTCAAGCCCCCTGTGGAGCCATGATTTTTG-CAGTTGAGAGATGGATCCTTCCTGTGTATGTATCGCTTTG
--CTAGAGCCTGGGTGGTG-CTCACAAACACTTGGCACTTGTGTGATTCTTTTGTCCATGGATGTACTGTGTACAACAAG
----TTGATGGGAATGTGATTTGGTATATGCTTTCAGTTTCATTTCATGGCAT----GTGGTTCGTATGTAACCCAGTAA
AAATTCA----AGTTCATTGCCCCTGCTCATGCACAGCCAAAAGCTCATCCAC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGAGCTCTCTCTCGTT------------------GC
-TTCCTTTCTTCCACGTCTCAACAGGAGGGGGC-ACGTGTCATGGAGCCAAGCTCCCACCCGTCCATCCCATTCCCATGG
ATGCATGCATG----------------CAGCATCATCCCGT---------CGCATCCTCAAGCTTCTTCTGTAGCCACCT
CGGTTCTCACTCATCCATCTTCCGGCGAGCTTGGTAGCAGGCAGGCGGTCGAGAGAGAGCTAGCCGAGAGAGAGACCTGC
CGGCCGGC--CGGAGACGATGGATCTGGTGAACGGCGTGCTCAACTGGGCGGCGATGCCCGCCATGGTCACCACCCTCCT
GCTCCTCTACCCGCCCTACTACCTCTTCAAGCTCTGCTACTCCTTCCTCTCCTACCTCTTCCCCGACGACCTCAAGCGCA
AGGTCGTCCTCATCACCGGCGCCTCCTCCGGCATCGGCGAGGTCACTACCCACTCCTTTCCCTTCTCTG-----------
-CTTCTTCTTGCTTGTTACAGAATCGTCAGATGCTTTCAGTCCAACTTTCCTCTGC----TTCTTATGCTACTCTGCTCT
TCTACTTGTCATAGTGTAC-----TGAATATACTC-----CACACATGAGCATATTAACTCCAAACAAAC---TTGGGAT
CTTCTCTTCTCCATGCAGCAACTGGCCTACCAGTACGCCACCAAGGGGGCATGCCTCGCCCTGGTCGCCAGGAGGGAGTG
GAGCCTCCGGCAAGTCGCCGACCGCGCCTTCGAGCTCGGCGCGCCGGATGTCATCATTCTCCCCGGCGACGTCGCAGACC
CCGACGACTGCAACAGATTCGTTCAGGCCGCGGTCGACCACTTCGGCCGATGTAAGTCAGCCACTCTCCGTTACAACTCA
CCTGGTTTAACATATTTCTTCCACAAGCAGTCATTCATTTGGGAGTAAGATACTAACTACGTACTTGACATTTACACTTG
CGTTGTGTTGA------------TTAATTGCAGTGGACCATCTTGTGTGCAACGCTGGCATTGCAAGCGTAGGCGCTTTT
CAGGAGATTCCCGATGTCACTAACTACAGCTCTCAGCTTGTAAGTGACATGCATGA----TTCATTGCGCCTTGATTCAG
CGA-------CGTTGTCGTAACATAGACTCCCATGAGCGTC-----AAAGTAACATTTTGTTTCCAGGATGTGAACTTCT
GGGGCGCAGTTCAGTCCACTTTTGCTGCTCTACCTCATCTTAAAAGGACCCGAGGGAGGATCGTGGTCACCGCCTCCGCA
ACCGGATGGAACCCCGTTCCGTGCATGGTTTTCTATAATGTATACTCCCTCCGTTCGTAAATATAAGTTTTTATAGAGAT
TCCACCAAGTGACTACGTAGTACT-ACCTAACTTGGTTTATTTCATCATTTAAG--TGAAGGAATCGGTTACGATGAATC
GAGTCATTGGTACTACTACTACTACTACTACTCATGTTTGT-----TTCCGTTTTAGGCTGCCAATGCCGCACTGATTAA
CTTCTTCGAGACGCTGCGGTCGGAGCTTGGCAGTGAAGTTGGCATCACGATAGTGACGCCCGGGTGGATCGAGTCCGAGA
TGTCCAAAGGAAAGTTTCTGAAGGAGGACGGCGGCGTGGAGGTTGATCAAGAATATCGAGATGTGAGGACACTTGCTACC
GCTCACGCTCACACTTTTCTACGTTTAAGCTAAATTTCTGTTAAAGCAATCAAACA-GTTTTAACATAGAAATCAATTGA
TTGTGATCATCTGCCATCTGGAATTATGGGCACAAGAAGATATGGAAAATAGTTACCAAATTAAGT---TTGCCACGTAA
TACTTGCAGCAAGTAAGTTCAATGACATCTTACTTATATACTATTGTCTGACCATGTGGGCATGTGGCCCTT-GCTTATT
TTCTAGGCTCAAATCGGCCTCTTCCCAGTGGAGTACGCCAAGAAGTGCGCGAGGGCCATGGTGCAGGCAGCTCGCCAAGG
CGACCGCTACCTCACCGTGCCGTCCTGGTTCGGAACAATGTACCTGTGGAGGGTGTTTGCGCCGGAGGTCGTCGAGTTCT
GCTACCGCCTCCTGTACATGCACGGCCATGGTGGCGGCGACCAGACCGATGCGCCGAGCAAGACGATGGCCCAGGGTGGC
----------------ACCCCTCCTCGCTGAGCTCTTCAGACGTCAAGAACGACTAGAAACTTACTATAGTTCGCATCCT
TTGATCGA---CGTGGATCCTAGCTGTGTTGTGCATGCAGGCTCGTTTGTTCTCTAATAATGGAGCTTTAGGTGTGGATG
CTACTGTTGGTTAGCTAGTTTGTAAAAAAAAACCGAATAATTAAGCTGTGTTCTGGGTTTGCG-ATATTAGTGCTCTGTT
GTGTGCTTGTAATATTAGTTCTGTGTTTGAGAGTGCGTGTGGATCTTCTCGTTGGTGTCTTCGGAATAATGCTTTGCAGT
TTGCACTACTTCCCATTACTCCTTGGGACTTCTTATGTCAACTTGTTAATT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---------
-------S-----SSSS--------------------------------------------------------S------
--S--------------S--------------------SS--------S--------S---------------------S
SS------------S--------SSSSSSSSSSS--SS-SSSS-------------------------------------
-------------------------S---------------------------SSSS--------------S-------S
SSS--S-SSS-SS-SSS--SSSSS-S------------------------------------------------------
-----------------------------------------S---SSS-SS------SSSSS-SS-SSS-S-S-SSSSS-
--SSSSS-S-SS-S-SSSSSSSSSS--SSSSSS-SSSSSSS--S-SSSSSSSSSSSSSSSSS------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S--------SS--SSSSSS-S-S-SS-SSS-SSSSSS------------
-S---------------S---S-------------------S-------S----------------SS-SS---------
-------------------------SS--S-----S-----SSSSSSSSS----SS----------------SS-SS--S
SSS-S-----------------------------S-------------------SS---SSSS-SS--------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
---------------------------------------------SS--S-S----------------------------
--------------------------------------------------------------------------------
-------------S-SSSSSSSSS---------SSSSSSS-S-------S--------S-SSS---SS-SS-S-------
--------------------------------------------------------S------S----------------
------S--------------------------------------S----------------------------------
-------------------S------------S-----------------------S-----------------------
---------SS-SSS------------------------------------------------S----------SS-SS-
S---------------------------------------------------------S---------------------
-----------S--S--S------------S-----------------S-S-----------------------------
-S-SSSSSSS------S------S------------------SSSS----------------------------------
----S---------------------------------------------------------------------------
--------------S--------S--------------------------------------------------------
-----------------------SS----------------------------------------------------S--
--------------------------------------------------------------------------------
------------S--S--------------S-----------------------------S-------------------
--------------------------------------------------------------------------S-S---
-------------------------------------------------S----------------------------S-
----------------------------------------------------------------S-SS----S-------
------------------------------------------------------------------------S-------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S--------------------------------S------------------------------
--------------------------------------------------------------------------------
--------SSS----------S-SS------------------S------------S-----------------------
------S------------------SSSSS-------------------------S----SSSS---------S-S----
--------------------------------S---S---S----SS-------------SS----------------S-
SSSSS---------S--S--------S---------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1323
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ACCACATCATCAACCCGTCC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_2258
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TACTAACTACAGCCCGCAGC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>forward_1327
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CATCATCAACCCGTCCCCAT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_2344
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GAGACTCCCATGAGCGTCAA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>forward_2291
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CGCAGCTTGTAAGTGACGTC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_4041
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CTACTGCTGCGGGGTTACAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
