>input_sequence_43879
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-------------ATGGCATCGCGGACCACCAGCCCCTGCCTGATCTTCCTCCTGGCGCTCCT---TCTCCCCCTCGCCG
CGGTCGCCGTGCCGCGCAGACACCGCTTTCCGTCGCTCCAGCTCGCCCCGGTCAACGCCTCGGAGCCACCCACCACTTTC
TTCGAGGTGGACCGCCCGATCCAGCCGCCGCGCGGCAGCGTCGGGCCCTGCTCCGCTCTGCTCCTCTCCGACTCCTTCGG
CTACACCTACGGCCGTCCTCCGGCCACCGCCGCCTACGTGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCCGGGGCGGGT
CGCTCGCGCTCGCGGTGCTCGAGTGGAGCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCC
GGCGCCGAGCTCCTCCGCAGCTGCACCGCCGAGCCGCGCCCCGACGGCATCCTCTGGTCGGTCTCCCGCGACGTCACGAG
GTACGCCGCCCTTCTCTCCGAGCCTGGCGAGGTCGCGGTGTACCTTGGCAACATCGTCGACAGCACGTACACCGGCGTCT
ACCACGCCAACCTCACCCTCCATCTTTACTTCCACTCCACAACGCCGTCACCGCCGCCGCT---GCCGCACGCCGATTTG
ATCCTGCCCATCTCGAGGAGCCTACCTCTGAACGACGGGCAGTGGTTCGCCATCCAGAATTCCGCCGATGTGCAGTCGAG
GAAGCTCGCCATTCCGTCGAACACCTACAGGGCGGTCCTTGAGGTGTTCGTTTCGTTCCACTCCAGTGATGAGTTCTGGT
ACACCAACCCTCCCAACGAGTACATTGAGGCCAACAATTTGTCCAGCGTCCCTGGCAATGGTGCGTTTCGGGAGGTTATT
GTTAAAGTCGATGACAATGTGGTCGGTGCTGTTTGGCCGTTCACTGTTATCTACACCGGCGGTGTCAACCCGCTTCTCTG
GCGGCCAATCACCGGCATTGGCTCATTCAACCTACCTACCTATGACATTGATATCACGCCTTTCTTGGGCAAGCTCATGG
ATGGCAAGGAGCACAATTTTGGGTTTGCTGTGACCAATGCATTGGATATGTGGTACATTGATGCCAATTTACATCTGTGG
TTGGATCACAAGAGCAAGAAGACAGTTGGGAGCTTGATCAGCTATGATGCAGCGTCGTCGGCA---AATGTGGACTCGCA
GTTCAGCGGGCTGGACGGGCGGTTCGTGACGAGCGCAAGCCGGCATGTCTCCGCCACCGGGTGGGTGGAATCGTCGCACG
GAAAGGTCATGACAACTTTCTACCAGAGATTCAACTACAAAAACAGCAATGTGTATAGCAAGAACGGCAGTGAGCAAGTG
GTGAACCAAACGATCGATGCCAAGTCAGGTGTTTCCACCACAAACGGCGCCGTGCTGCT---CTCGGAAGAAGTTCACCA
GGTCTTCCCACTCTATCTTTTCTCTGGGACCTCAGATGAAGTGGGTGATGAGTACTCGCTGGTTTCAGCTATCAAATTGA
GCATCAATGAGAAGAGGGGCTCTGGTGCGGAGCAAGGCTTCTCCTACAGCTCTCTGCGGAATGCGCAGTCGGCACGCGGT
AGTATGAGGGTGAAGGGGAATTTGGTGACTTCTGGGTCTGGTGAGAACCATCAGGTGTATAAATATGTGGGTACCGATGG
ATGCTACTCCAGAGATGTGAGCAGCAAGAACTACACTATCGTTTTCGACCACTCTGATGACTCGTGCTTAAAGGGATCAC
A---AGTTAAAGGCTCCAGATTCCCCTCCAGTTAG---------------------------------------------
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--------------------------------------------
>chr3D_1_TraesCS3D01G151100
ATATTTTAGAGTGTAGATTCACTCATTTAGCTCCGTATGTAGTCACTTGTTGAAATCTCTAGAAAGACAAATATTTAGGA
ACGGAGGAAGTAGATTGACAGGTTACCTACATTTTATGTTCGTCTAGCTTGTGTACTTTTTTCTTCTCCAAATAGTTTGT
CTACTCTTAGTGGCACATACACATACATATTTTGTCCAATGAATTAAAATAAACTGCCAGCAATGTTTGATTGGTAGATT
GTCTACTCTACTATTTCATCTTCATGTCACATGTAGATTGGTAATGACATATCAAGAATGTATGATGCTGATGCTGTGAT
TTTCATAAGATGCATAATTTTTCCAAATCTGTAGTTGTGTGGGAGGTTAACTCACTGGCAGTATATATATTGGG-TTTGA
TTGAAGTTCTGATGCGTGCCTTTGTTCTTGCAGGCTGAACGTTGCACTACCTGTGGCTGCTATTTCACCCTCGAAGCCGG
CCAACATGATGTAACCTGTCAAGATTGTATGTATGAAGCCATGTTTGCACGACGGTGACCTTCCCGGGCATCTTTTCACT
AACGGCCCGTATTGGCTTTATGTGTATGTGAACGGCGCTGCACACCATTTTTGCATTTGGAGGGCTGCCGGCGTAACTGG
ACATCCATTAGGCTTTCACCAATTACCAATGCCA--ATAGACAATTTCAAGTATGATCCAACAGATTGTGTTCTCATATG
TCAGCCTAGTTGGGTCTTAGAGAACACTGTTGCTAGCCTGTTTTCTTCTTCTTGATGAA---------------------
--------------GTTATGCAAGAAAATATGCTTTGACTGATCTTGTGATTTCCTGATGCAGTGTCAATATGGCCTAGG
GCCTGACATGTGGGCCTGAAACTAGTGGCACCACCTAGGGGCCTGACATGTGGGCCCAATCGTGAG-------------A
AGGGGTAGATTGGTGGATTTTGGCTCAACAGTGTTGACAATTG-TTTAAACCAGCTCCACTCCCACTCCACCCACTCCCT
CCA-GCTCCAGCCATGGCATCGCGGACCACCAGCCCCTGCCTGATCTTCCTCCTGGCGCTCCT---TCTCCCCCTCGCCG
CGGTCGCCGTGCCGCGCAGACACCGCTTTCCGTCGCTCCAGCTCGCCCCGGTCAACGCCTCGGAGCCACCCACCACTTTC
TTCGAGGTGGACCGCCCGATCCAGCCGCCGCGCGGCAGCGTCGGGCCCTGCTCCGCTCTGCTCCTCTCCGACTCCTTCGG
CTACACCTACGGCCGTCCTCCGGCCACCGCCGCCTACGTGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCCGGGGCGGGT
CGCTCGCGCTCGCGGTGCTCGAGTGGAGCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCC
GGCGCCGAGCTCCTCCGCAGCTGCACCGCCGAGCCGCGCCCCGACGGCATCCTCTGGTCGGTCTCCCGCGACGTCACGAG
GTACGCCGCCCTTCTCTCCGAGCCTGGCGAGGTCGCGGTGTACCTTGGCAACATCGTCGACAGCACGTACACCGGCGTCT
ACCACGCCAACCTCACCCTCCATCTTTACTTCCACTCCACAACGCCGTCACCGCCGCCGCT---GCCGCACGCCGATTTG
ATCCTGCCCATCTCGAGGAGCCTACCTCTGAACGACGGGCAGTGGTTCGCCATCCAGAATTCCGCCGATGTGCAGTCGAG
GAAGCTCGCCATTCCGTCGAACACCTACAGGGCGGTCCTTGAGGTGTTCGTTTCGTTCCACTCCAGTGATGAGTTCTGGT
ACACCAACCCTCCCAACGAGTACATTGAGGCCAACAATTTGTCCAGCGTCCCTGGCAATGGTGCGTTTCGGGAGGTTATT
GTTAAAGTCGATGACAATGTGGTCGGTGCTGTTTGGCCGTTCACTGTTATCTACACCGGCGGTGTCAACCCGCTTCTCTG
GCGGCCAATCACCGGCATTGGCTCATTCAACCTACCTACCTATGACATTGATATCACGCCTTTCTTGGGCAAGCTCATGG
ATGGCAAGGAGCACAATTTTGGGTTTGCTGTGACCAATGCATTGGATATGTGGTACATTGATGCCAATTTACATCTGTGG
TTGGATCACAAGAGCAAGAAGACAGTTGGGAGCTTGATCAGCTATGATGCAGCGTCGTCGGCA---AATGTGGACTCGCA
GTTCAGCGGGCTGGACGGGCGGTTCGTGACGAGCGCAAGCCGGCATGTCTCCGCCACCGGGTGGGTGGAATCGTCGCACG
GAAAGGTCATGACAACTTTCTACCAGAGATTCAACTACAAAAACAGCAATGTGTATAGCAAGAACGGCAGTGAGCAAGTG
GTGAACCAAACGATCGATGCCAAGTCAGGTGTTTCCACCACAAACGGCGCCGTGCTGCT---CTCGGAAGAAGTTCACCA
GGTCTTCCCACTCTATCTTTTCTCTGGGACCTCAGATGAAGTGGGTGATGAGTACTCGCTGGTTTCAGCTATCAAATTGA
GCATCAATGAGAAGAGGGGCTCTGGTGCGGAGCAAGGCTTCTCCTACAGCTCTCTGCGGAATGCGCAGTCGGCACGCGGT
AGTATGAGGGTGAAGGGGAATTTGGTGACTTCTGGGTCTGGTGAGAACCATCAGGTGTATAAATATGTGGGTACCGATGG
ATGCTACTCCAGAGATGTGAGCAGCAAGAACTACACTATCGTTTTCGACCACTCTGATGACTCGTGCTTAAAGGGATCAC
A---AGTTAAAGGCTCCAGATTCCCCTCCAGTTAGTTTAGACGATCCGTTGATCGAACTGTACTGCAAGTTAGAGAATAA
GATTTGCATAGTTTATCCTGTGCCTCGTGTGGTAGGTAGAAATC------TTGGAAAATTCAATTTAAACTCACTGTTTT
CGAATGTATCAGTGACACTTTTAATTTGGTTTGAAATGATTCTGCTCCGCACAGGTTATGATTATCATTGACACTT--TT
AGTACTTAATATAATCAAGCTTCTGTCATTATTACTG-----ATTACATTATTTTCTGCATGTTCACAAGCATCTGATTG
GATCTCGTTTTGGCGTTGCTGCGTCTGTTCCAATCTCCAACTCAATCGCTCATCGCTGGAGAATGGAGATCGATTTACTG
TCAC----AAAAAAGAAGCCCTAGCCCCTCGAAAAGATCTCTTGAGTGACACCGGGAAGAAGAAAGCGTGCTCACAAGA-
---TGGGTGTTGCAATATGCAGTGCTGGAGATGTTCTTCCAGTTCATTCATAAAAAAGATGTTCATATCTCCTGAGCAGT
GGTGCAACGCTATGGGT------GGAGGCGGAGGCAACTAA-TTGCTCACATTGGAAAACGAAGTGCTACTGCTCCATTG
ATGTAGTGGTTTTCCAGCTAGCTTCTTTCTTTCTGAGCCTTTCAAGTTCCTTTTGTACAGAACGAAACTTCTGTTTGCCG
CACGTTCTTCGCTGATCTCACTTATTTTTTTGGTCACTGAGCTCACTGTTGTCTTCAGCAATTGAAGCTTCCGCTGGAGA
TTTGGCGGCTTTGTCAGTCGAAATTCCAGGCAGCACCAACTCATGCAGCGAAGGATGGTTATTTTTTCCCACACCAACTC
GTAGCCCCCTCTCCTTGGATTATGTTCTTCTGACTCTTGACTGCTAGGATTAAGTTTG-TTTTTTAGGGAAACAGCAGGC
CTCTGCTGCGTATTTTCATTGA----------------------------------------------------------
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------------------------------------------TTTTTTTTAAGTACAAAGAGTCTATACGGAAAAAGGAA
AGAAGTATCTATACAGCAGCAGGACTAACATCCTGCAAAAAAGG
>chr3B_91
--------------------------------------------------------------------------------
----------TAGATTGACAGGTTACCTACATTTTATGTTCGTCTAGTTTGGGCACTTTTTTCTTCTCCAAATAGTTTGT
CTACTCTTAGTGGCACATACGCATACATATTTTGTCCAACGAATTTAAATAAACTGCCAGCAATGTTCGATTGGTAGATT
GTCTACTCTACTAT------TTCATGTCGCGTGTAGATTGGTAATGACATATCAAGAATG-ATGATGCTGATGCTGTGAT
TTTCATAAGATGCAGAATATGTCCAAAGCTGTAGTTGTGTGGTTGGTTAACTCACTGGCAGTATATATCTTGGG-TTTGA
GTGAAGATCTGATGCGTGCCTTTGTTCTTGCAGGCTGAACGTTGCACTACCTGTGGCTGCTATGTCACCCTCGAAGCCGG
CCAACATGATGTAACCTGTCAAGATTGTATGTATGAAGCCATGTTTGCACGACGGTGACCTTCCCGGGCATCTTTTCACT
AATGGCCCGTATTGGCTTTATGTGTATGTGCACGGCGCTGCACACCATTTTTGCATTTGGAGGGCTGCCGGCG-AACTGG
GCATCCTTTAGGCTTTCACCAA---CCAATGCCA--ATAGACAATTTCAAGTATGATCCAACAGATTGTGTTCTCAAATG
CCAGCCTAGTTGGGTCTTAGACAGCACTGTTGCTAGTCTGTTTTCTTCTTCTTGATGAA---------------------
--------------GTTATGCAAGAAAATATGCTTTGACTGATCTTGTGATTTCCTGATGCAATGTCAATATGGCCTAGG
GCCTGACATGTGGGCCTGAAAACAGTGGCACCACCTAGGGGCCTGACATGTGGGCCCAGTCGTCAG-------------A
AGGGGTAGATTGGTAGATTTTGGCGT---AGTGTTGGCAATTGTTTTAAACCAGCTCCACTCCCACTCCACCCACTCCCT
CCAAGCTCCAGCCATGGCATCGCGGACCACCAGCTCCTGCCTGATCTTCCTCCTGGCGCTCCT---CCTCCCCCTCGCCG
CGGTCGCCGTGCCGCGCAGACACCGCTTTCCGTCGCTCCAGCTCGCCCCGGTCAACGCCTCGGAGCCACCCACCACCTTC
TTCGAGGTGGACCGCCCGATCCAGCCGCCGCGCGGCAGCGTCGGGCCCTGCTCCGCGCTGCTCCTCTCCGACTCCTTCGG
CTACACCTACGGCAGTCCTCCGGCCACCGCCGCCTACGTGCCGCCCGGGTGCCTCGCCGC------------GGGCGGGT
CGCTCGCGCTCGCGGTGCTCGAGTGGAGCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCC
GGCGCCGAGCTCCTCCGCAGCTGCACCGCCGAGCCGCGCCCCAACGGCATCCTCTGGTCGGTCTCCCGCGACGTCACGAG
GTACGCGGCCCTTCTCTCCGAGCCTGGCGAGGTCGTGGTGTACCTTGGCAACATCGTCGACAGCACATACACCGGTGTCT
ACCACGCCAACCTCACGCTCCATCTTTACTTCCACCCCACAACGCCGTCACCGCCGCCGCCGCCGCCGCATGCCGACTTG
ATCCTGCCCATCTCGAGAAGCCTGCCTCTGAACGACGGGCAGTGGTTCGCCATCCAGAATTCCGCTGATGTGCAGTCAAA
GAAGCTGGCCATTCCGTCGAACACCTACAGGGCGGTCCTGGAGGTGTTCGTTTCGTTCCACTCCAGTGATGAGTTCTGGT
ACACCAACCCTCCCAACGAGTACATTGAGGCCAACAATTTGTCCAGCGTCCCTGGCAATGGCGCGTTTCGGGAGGTTATT
GTTAAAGTCGATGACAATGTCGTCGGTGCTGTTTGGCCGTTCACTGTCATCTACACCGGCGGTGTCAACCCGCTTCTCTG
GCGGCCAATCACCGGCATTGGCTCATTCAATCTACCTACCTATGGCATTGATATCACGCCATTCTTGGGCAAGCTCATGG
ACGGGAAGGAGCACAATTTTGGGTTTGCTGTGACCAATGCATTGGATATGTGGTACCTTGATGCTAATTTACATCTGTGG
TTGGATCACAAGAGCAAGAAGACAGTTGGGAGCTTGATCAGCTATGATGCAGCGTCGTCGGCA---AATGTGGACTCGGA
GTTCAGCGGGCTGGACGGGCGGTTCGTGACGAGCGCAAGCCGGCATGTCTCCGCCACCGGGTGGGTGGAATCGTCGCACG
GAAAGGTCATGACAACTTTCTACCAGAGATTCAGCTATAGAAACAGCAATGTGTATAGCAAGAACGGCAGTGAGCAAGTG
GTGAACCAAACGATCGACGCCAAGTCAGGTGTTTCCACCACAAACGGCGCCGTGCTGCT---CTCGGAAGAAGTTCACCA
GGTCTTCCCACTCTATCTTTTCTCTGGGACCTCAGACGAAGTGGGTGATGAGTACTCGCTGGTTTCGGCTGCCGAGCTGG
GCATCAATGAGAAGAGGGTCTCTGGTGCGGAGCAAGGCTTCTCCTACAGCTCTCTGCGGAATGCGCAGTCGGCACGCGGT
AGTATGAGGGTGAAGGGGAATTTGGTGACTTCCGGGTCCGGTGAGAACCATCAGGTGTATAAATATGTGGGTACCGATGG
ATGCTACTCCAGAGATGTCAGCAGCAAGAACTACACTGTCGTTTTCGACCGCTCTGATGACTCGTGCTTAAAGGGATCAC
A---AGTTAAAGGCTCCAGATTCCCCTCCAGTTAGCTCAGACGATCCG------GAACTGTACTGCAAGTTAGAGAATAA
GATTTGCATAGTTTATCCTGTGCCTCGTATGGTAGGTAGAAGTAGAAATCTTGGACATTTCAATTTGAACTCACTGTTTT
CGAATGTATCAGTGACACTTTTAATTTGGTTTGAAATGATTCTGCTCCGCACAGGTTATGATTATCATTGACACTT--TT
ACTACTTAATATAATCAAGCTTCTGGCATTATTACTG-----ATCACATTATTTTCTGCATGTTCACAAGCATCTGATCG
GATCTCATTTTGGCCTTGCCGCGTCTGTTCCAGTCTCCAACTCAATTGCTCATCGCTGGAGAATGGAG--CGATTTACTC
TCGC----AAAAAAGAAGCCCTAGCCCCTCAAAAAGATGTCTTGAGTGACACCGGGAAGAACAAAGCGTGCTCACAAGA-
---TGGGTATTGCAATATGCTGTGCTGGAGATGTTCTTCCAGTTCATTCATAAAAAAGATGTTCATATCTCCTGAGCAGT
GGTGCAACGCTATGGGT------GGAGGCGGTGGCAACTAA-TTGCTCACATTGGAAAACGAAGTGCTACTGCATATT--
--------------------GCTTCTTTCTTTCTGAGCCTTTCAAGTTCCTTTTGTACAGAACGAAACTTCTGTTTGCGG
CACGTTCTTCGCTGATCTCACTTTTTTTTTTGGTGACTGAGCTCACTGTTGTCTTCAGCAATTGAAACTTCCGCTGGAGA
CTTGGC---TTTGTCAGTCGAAATTCCAGGCAGCACTAACTCATGCAGCAAAGGATGGTTATTTTTTCCCACACCACCTC
GTAGCCCCCT-----TGGATTATGTCCTTCTGACCCTTGACTGCTAGGATTAAGTTTTTTTTTTTAGGCAAACGGCAGGC
CTCTGCTGCGTCTTTTCATTGATTTTTTTTGGGCGACGCTACGCGTCCGCCGGTCGATGTTTAGATTTTATCCGTCGCCT
CGACGGCCGTTGGATGCCCGAACTGATAGCCGTCTGATCTAGTGTTCACGCCCCGCATGCCCACTCGTTATTTCCCGCAA
CAAATGCTCTGTTGCGGAAACAACACTATTGCCCCCCGACCCCGACAGAGTTGCGCCCCGCGCGGCGCCACCGCCAACCC
ACCGCAAAATTAGCCCGCCGCCAGCGTGCAGGAAGTTTCTGCAACACTATGGCGCACCATATTGCACCTCAGATGGTTGG
ATCTGACGCAAATCGAGCTCACCAAGGGGGCCTGCTTCGAGAGCAACCACGGCTTCTACTCCAACATGACGGCGACGAGC
TCTCACGCTGGGCACTCCTTTGACGATTTATGTAACTGAAGCTATGTTTTTGAATCATGCATCGTGTTGCAATGCTTGGC
CTCGTACGCTCTGACATCGTGTGCTCCTCCAACGCTTTCTGCAACCAGGGCTATGTTTCTGAAGCAAGACCCATGTTGCA
GAAAAAAAAAACTTCGCTGCCGAACCTTTTTTTTTCCTGAAACAAGACTTGTGTTGCAGAAACTTTTCTAAAACTAGACC
TTGTTGCTAACAAAAAACTTCACCACCAAATCGTTTTTTAATTTCTGAAACAAGATCTTTGTTGCAGAAACCGTTGATCT
CTGATTCGTGCCTGCTTGAGTCGTCACCGGCCGCCGCCGATCCCGAGCAAGTCGTCGCCGCCACCACGGTGGATAAGGCC
TGGTGGCCCAACGCCTTGCGCCACCGCGCCCGTCCGACGGCTCCCAAATCCAGTCGCTCGCCTTCTAATCCATACGAGCC
TCGAAACCCCATACTGTTACCCAGTTGCAGGAATGATTGTCTTGAAACAACAGGTGAGTTGCAGGAGAACAGACGCGGCA
TACAGACGAGCGTCGAAACCCCCTACTGTAACACAGTTGCATGAATGACAGTCTTGAAACAACAGGCGAGTTGCAGGAAA
ACAGATGCGGCTTCGACAGACGCAGGGAAGTTGTCGACCGTCTGATCAACACACGATCAAACGGTTACAGAGCCGGCGGA
CGGGCGTGCGCGATCGGTCGGTAGAAGGCAAGCTTTTTCCTTTTTTTTTAAAGTACAAAGAGT--ATACAGAAAAAGGAA
AGAAGTATCTATACAGCAGCAGGACTAACATCCTGCAAAAAAGG
>chr3A_261
--------------------------------------------------------------------------------
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--------------------TTTATGCCACATGTAGATTGGTAAGGACCTTTTAAGAATGTATGATGCTGATGTTGTGAT
TTTCATAAGATGCGGAATTTTTCCAAAGCTGTAGTTGTGTGGTAGGTTAACTCACTGGCAGTATATGTATTTGGTTTTGA
GTGAAGATCTGATGCATGCCTTTGTTCTTGCAGGCTGAACGTTGCACTGCCTGTGGCTGCTATTTCACCCTCGAAGCCGG
CCAACATGATGTAACCTGTCAAGATTGTATGTATGAAGCCGTGTTTGCACGGCGTTGAACTTCTCGGGCATCTTTTCTCT
ATGGCCCG------------------------------------------------------------------------
-----CATTAGGCTTTCACCAATTACCAATGCCAGTATAGACAATTTCAAGTATGATCCAACAAATTTAGTCCTCAAATG
CCAGCCTAGTTGGGTTTTAGAGAACACTGTTGCTAGTCTGTTTTTTTCTTTTCTTGATGAAGCTTATTTTGGAATATATA
TTTAAATTTATATTGTTATGCAAGAAAATATGCTT----TGATCTTGTGATTTCCTGATGCAATGTCAATATGGCCTAGC
GTCTGACATGTGGGCCTGGAAACAGTGGCACCACCTAGGG-CCTGACATGTGGGCCCAATCGGTCGGATTGGCTGTTAAA
AGGGGTAGGTTGGTAGATTTGGGCTTTAGTGCT-----AATTG-TTTAAACCAGTTCCACTTCCACTCCACCACTCCCT-
---AGCTCCATCCATGGCGTCGCTGACCACCAGCTCCTGCCTGCTCCTCCTCCTGGCGCTCCT---CCTCCCCCTCGCCG
CGGTCGCCGTGCCGCGCGGACACCGCTTTCCGTCGCTCCAGCTCTCGCCGGTCAACGCCTCGGAGCCACCCACCGCCTTC
TTCGAGGTGGACCGCCCGATCCAGCCTCCGCGCGGCAGCGTCGGGCCCTGCTCCGCGCTGCTCCTCTCCGGCTCCTTCGG
CTACACCTACGGCCGCCCTCCGGCCACCGCCGCCTACGCGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCGGGGGCGGGT
CGCTCGCGCTCGCGGTGCTCGAGTGGAGCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTGGGCGTCTGGCTCTCC
GGCGCCGAGCTCCTGCGCAGCTGCACCGCCGAGCCGCGCCCCAACGGCATCCTCTGGTCGGTCTCCCGCGACGTCACCAG
GTACGCCGCCCTCCTCTCCGAGCCTGGCGAGATCGCGGTGTACCTTGGCAACATCGTCGACAGCACGTACACCGGCGTCT
ACCACGCCAACCTCACCCTCCATCTTCACTTCCACTCCACAACTCCGTCACCGCCGCCAA---CGCCGCACGCCGATTTG
ATCCTGCCCATCTCGAGAAGCCTGCCTCTGAACGACGGGCAGTGGTTCGCCATCCAGAATTCGGCCGATGTGCAGTCAAA
GAAGCTCGCCATTCCGTCGAACACCTACAGGGCGGTCCTTGAGGTGTTCGTTTCGTTCCACTCCAGTGACGAGTTCTGGT
ACACGAACCCTCCCAACGAGTACATTGAGGCCAACAATTTGTCCAGCATTCCTGGCAATGGTGCGTTTCGGGAGGTTATT
GTTAGAGTCGACGAACACGTCGTCGGTGCTGTTTGGCCGTTCACTGTCATCTACACCGGTGGTGTCAACCCGCTTCTCTG
GCGGCCAATCACCAGCATTGGCTCATTCAACCTACCTACCTATGACATTGATATCACGCCATTCTTGGGCAAGCTCATGG
ACGGCAAGGAGCACAATTTTGGGTTTGCTGTGACCAATGCATTGGATATGTGGTACATTGATGCCAATCTGCATCTGTGG
TTGGATCACAAGAGCAAGAAGACAGTCGGGAGCTTGATCAGCTATGATGCAGCTTCGTCGGCA---AATGTGGACTCACA
GTTCAGCGGGCTGGACGGGCGGTTCGTGACGAGCGCAAGCCGGCATGTCTCCGCCACCGGGTGGGTGGAATCGTCGCACG
GAAAGGTCATGACAACTTTCTACCAGAGATTCAGCTACAAAAACAGCAATGTGTATAGCAAGAGCGGCAGTGAGCAAGTG
GTGAACCAAACGATCGACGCCAATTCAGGTGTTTCCGCCACGAACGGCGCCATGCTGCTGCTCTCAGAAGAAGTTCACCA
GGTCTTCCCACTCTATCTTTTCTCTGGGACCTCGGACGAAGTGGGTGATGAGTACTCGCTGGTTTCGGTTGTCAAGCTGG
GCATCAATGAGAAGAGGGCCTCTGGTGGGGAGCAAGGCTTCTCATACAGCTCTCTGCAGAATGAGCAGTCGGCACGCGGT
AGTATGAGGGTGAAGGGGAATTTGGTGACTTCTGGGTCCGGTGAGAACCACCAGGTGTATAAATATGTGGGTACCGATGG
ATGCTACTTCAGAGATGTCAACAGCAAGAACTACACTGTCGTTTTCGACCACTCTGGTGACTCGTGCTTAAAGGGATCAT
CACGAGTTAATGGCTCCAGATTGCCCTCCAGTTAGTTTAGACGATCTGTTGATCGAACTGTACTGCAAGTTAGAGAATAA
GATT-GCATAGGCTATCCTGTGCCTCGTGTGGTAGGTAGAAATA------TTGGAAATTTCAATTTAGACTTACTGTTTT
CGAATGTATCAGTGACACTCTTAATTTGGTTCGAAATGATTCTGCTCTGCACAGGTTTGAAATGAACTGTACTACAAGTT
ACTACTTAT--TAATCAAGCTTCTGACATTGTTACTGGTTACATTACATTATTTTCTGCATGTTCACAAGCATCTGATCG
GGTCTCATTTTGGCCTTGCTGCGTCTGTTCCAATCTCCAACTCAGTCGCTCATGGCTGGAGAACGGAGAGCAATTTATAG
TCGCAGAAAAAAAAGAAGCCCTAGCCCCTCGAAAAGCTCTCTTGAGTGACACGGGGAAGAACAAAGCGTGCTCACAAGAT
GGATGGGTATTGCAATATGCAGTGCTGGAGGTGTTCTTCCAGTTCATTCAT-AAAAAGATGTTCATATCTCCTGAGCAGT
GGTGCAACGCTATGGGTGGAGATGGAGGCGGATGCAACTAATTTGCTCACATTGGAAAACGAAGTGCTACCGCTCCATTG
ATGTGGTGGTTTTCCAGCCAGCTCCTTTCTTTCTGAGCCTTTCAAGTTCCTTTTCTACAGAACGAAACTTCTGTTTGCCG
CACGTTCTTCGCTGAGCCCACT------------------------TGTTGCCTTCAGCAATTCAAACTTCCGCTGGAGA
CTTGGC---TTTGTCAGTGGAAATTCCAGGCAGCACCGACTTATGCAGCGAAGGATGGTTACC-TTTCTCACGCCACCTC
GTAGCCCCCT-----TGGATTATGCCCTTCTGACTCTTGACTGCTAGGATTAAGCTTG----------------------
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>chr3A_1013
ACCGCC--------------------------------------------------------------------------
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--------------------------------GCCGCCTCCTCCTCCTCCTCATCGCGCTTCTCCTCCTCCCGTTCGCCG
CGGCCGCCGCGCCGCACAGGCACCGCGTCCCGTCCCGCCACCTCGCCTCGCTCAACGCGTCGGCGCCGCCGACCACCTTC
TTCGAGGTGGACCGCCCGATCCGCCCGCCGCTCGGCAGCGCCGGGCCCTGCTCCGCGCTGCTCCTCTCCCACTCCTTCGG
CGAGACCTACGGCAGGCCCCCGGTCACCGCCGCCTACGCGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCCGGGGCGCCT
CGCTCGCGCTCGCCGTGCTCGAGTGGGCCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCC
GGCGCCGAGCTCCTCCGCAGCTGCACCGCCGAGCCGCGCGCCACCGGCATCGTCTGGTCCGTCTCCCGCGACGTCACCAG
GTACGCGGCCCTTCTCAATGAGCCCGGCGAGGTCGCGGTGTACCTTGGCAACCTCGTCGACAAGACCTACACGGGCGTCT
ACCACGTCAACCTCACGCTCCACCTCTACTTCCACC------CTGCGCCGCCGCCGCTCA---CGCAGCACGCCGATCTG
ATCGTGCCCATCTCGAGAAGCTTGCCTCTGAACGACGGGCAGTGGTTCGCCGTCCAGAACGCCACCGACGTGCAGTCCAA
GAGCCTCTCCATTCCGTCGAACACCTACCGGGCGGTCCTTGAGGTATCCGTTTCCTTCCACTCCAGCGATGAGTTCTGGT
ACACGAACCCTCCCAATGAGTACATTCAGGCCAACAATTTGTCCAGCGTTTCTGGCAATGGTGCGTTTCGGGAGGTTATT
GTTAAAGTAGATGACCATATCGTCGGTGCTGTTTGGCCGTTCACTGTCATCTACACCGGCGGCATCAACCCACTTCTCTG
GCGGCCAATCACCGGCATTGGCTCATTCAATCTGCCTACCTATGACATTGATATCACGCCATTCTTGGGCAAGCTCCTGG
ACGGCAAGGAGCATAATTTTGGGTTTGCTGTCACCAATGCATTGGATGTGTGGTACATCGATGCCAATTTACATCTGTGG
CTGGATCACAAGAGCAAGAAAACAGTCGGGAGCTTGATCAGCTATGATGCACCGGCACTGGCACTGAATTTGGACTATGG
GTTCAGTGGGCTGGATGGTAAGTTCGTCACGGGCGCAAGCCGGCATGTCTCCGCAACCGGGTCGGTGAAATCATCATACG
GGGAGGTGACCACAACTTTCTACCAGAGATTTAGCTATGTTAACAGCAATGTATATAGGAGCAATGGCACTGTGCAAGTG
GTGAACCAAACGATTGATGCAAAGTCTGGTGTTTTTGTCAAGGATACTTCTGCTGTTCTTCTCTCAGAGGAGGTTCACAA
GGTGTTTCCGCTGTATGTCTACACTGGAACATCAGACCAGGTGGGTGATGAGTACTCATTGATTTCGCTTGTCAAATTGG
GCATCAACGAGAAGAGTGTTTCGGGTGGGAAGCTAGGGTTCTCGTACCGCTCTTTGCGGAATGCACAGTCAGCACGCGGC
ACAATGAAGGTGAAGAAGAATTTGGTGGTTAGTGGTTTGGGGCAGACACATCAGGTGTACAAATATATGGGTACTGATGG
ATGCTACTTCAGGGATGTGAGCAGCAAGAATTACACTATAATTTCTGACAACTCTGGTGATTCTTGCTCAAAGGGATC--
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>chr3D_1014
--------------------------------------------------------------------------------
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--------------------------CCTCCAGCCACCTCCACCTCCTCCTCATCGCGCTTCTCTTCCTCCCGTTCGCCG
CGGCCGCCGCGCCGCACAGGCACCGCGTCCCGTCCCGCCACCTCGCCTCGCTCAACGCGTCGGCGCCACCAACCACCTTC
TTCGAGGTGGACCGCCCGATCCGCCCGCCGCTCGGCAGCGTCGGGCCCTGCTCCGCGCTGCTCCTGTCCCACTCCTTCGG
CGAGACCTACGGCCGCCCCCCGGTCACCGCCGCCTACGCGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCAGGGGCGCGT
CGCTCGCACTCGCGGTGCTCGAGTGGACCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCG
GGCGCCGAGATCCTCCGCAGCTGCACCGCCGAGCCGCGCGCCACCGGCATTGTCTGGTCCGTCTCCCGCGACGTCACCAG
GTACGCGGCCCTCCTCGCGGAGCCCGGCGAGGTCGCGGTGTACCTTGGCAATCTCGTCGACAAGACCTACACGGGCGTCT
ACCACGTCAACCTCACGCTCCACCTCTACTTCCGCC------CTGCGCCGCCGCCGCTCA---CGCAGCACGCCGATCTG
ATTGTGCCCATCTCGAGAAGCTTGCCTCTGAACGACGGACCGTGGTTCGCCGTCCAGAATGCCACCGACGTGCAGTCCAA
GAGCCTCTCCATTCCATCGAACACCTACCGGGCGGTCCTTGAGGTGTTCGTTTCGTTCCACTCCAGCGATGAGTTCTGGT
ACACGAACCCTCCCAACGAGTACATTGAGGCCAACAATTTGTCCAGCGTTCCTGGCAATGGTGCTTTTCGGGAGGTTATT
GTTAAAGTCGATGACCATGTGGTCGGTGCTGTTTGGCCGTTCACTGTCATCTACACCGGCGGCGTCAACCCGCTTCTCTG
GCGGCCAATCACCGGCATTGGCTCATTCAATCTACCTACCTATGACATTGATATCACGCCATTCTTGGGCAAGCTCCTGG
ACGGCAAGGAGCACGATTTTGGGTTTGCTGTCACCAATGCATTGGATGTGTGGTACATTGATGCCAATTTACATCTGTGG
CTGGATCACAAGAGCAAGAAAACAGTCGGGAGCTTGATCGGCTATGATGCACCCGCATTGGCACTGAATTTGGACTCTGG
GTTCAGTGGGCTGGATGGTAAGTTCGTCACGGGCGCAAGCCGGCATGTCTCCGCGACCGGGTCGGTGAAATCATCATACG
GGGAGGTGACCACAACTTTCTACCAGAGATTCAGCTATGTTAACAGCAATGTGTATACCAACAATGGCACTGTCCAAGTG
GTGAACCAAACGATTGATGCAAAGTCTGGTGTTTTTGTCAAGGATACTTCTGCTGTTCTTCTCTCGGAGGAAGTTCACAA
GGTGTTTCCGCTGTATGTCTACACTGGAACATCAGACCAGGTGGGCGACGAGTACTCACTGATTTCACTTGTCAAATTGG
GCATCAACGAGAAGAGTGTCTTAGGTGGGAAGTTGGGGTTCTCGTACCGCTCTCTGCGGAATGCACAGTCAGCACGCGGC
ACTATGAAGGTGAAGAAGAATTTGGTGGTTAGTGGACTGGGGAAGACACATCAGGTGTACAAATATGTGGGTACTGATGG
ATGCTACTTCAGGGATGTGAGCAGTAAGAATTACACTATAATTTCTGACAACTCTGGTGATTCTTGCTCAAAGGGATC--
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>chr3B_1032
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--------------------------------------------TCCTCCTCATCGCGCTTCTCTTACTCCCGCTTGCCG
CGGCCGCCGCGCCGCACCGGCACCGCATCCCGTCCCGCCACCTCGCCTCGCTCAACGCGTCGGCGCCACCAACCACCTTC
TTCGAGGTGGACCGCCCGATCCGCCCGCCGCTGGGCAGTATAGGGCCCTGCTCCGCGCTGCTCCTGTCCCACTCCTTCGC
CGAGACCTACGGCAGGCCCCCGGTCACCGCCGCCTACACGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCCGGGGCGCGT
CGCTCGCGCTCGCGGTGCTCGAGTGGAGCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCG
GGCGCCGAGATCCTCCGCAGCTGCACCGCCGAGCCGCGCGCCACCGGCATTGTCTGGTCCGTCTCCCGCGACGTCACCAG
GTACGCATCACTCCTCGCGGAGCCCGGCGAGGTCGCGGTGTACCTTGGCAATCTCGTCGACAAGACCTACACGGGCGTCT
ACCACGTCAACCTCACGCTCCACCTCTACTTCCACC------CTGCGCCGCCGCCTCTCA---CGCAGCACGCCGATCTG
ATTGTACCCATCTCGAGAAGCTTGCCTCTGAACGACGGGCAGTGGTTCGCCGTCCAGAATGCCACCGACGTGCAGTCCAA
GAGCCTCTCCATTCCGTCGAACACCTACAGGGCGGTCCTTGAGGTGTTCGTTTCGTTCCACTCCAGCGATGAATTCTGGT
ACACCAACCCACCCAATGAGTACATTGAGGCC------------------------------------------------
-------------------------GTGCTTTTTGGCCGTTCACTGTCATCTACACCGGCGGTGTCAACCCGCTTCTCTG
GAGGCCAATCACCGGCATTGGCTCGTTCAATCTACCTACCTACGACATTGATATCACGCCATTCTTGGGCAAGCTCCTGG
ACGGCAAGGATCACAATTTTGGGTTTGCTGTCACCAATGCATTGGATGTGTGGTACATTGATGCCAATTTACATCTGTGG
TTGGATCACAAGAGCAAGAAAACAGTCGGGAGCTTGATCAGCTATGATGCACCCGCATTGGCACTGAATTTGGACTCTGG
GTTCAGTGGGCTGGATGGTAAGTTCCTCACGGGCGCAAGCCGGCATGTCTCCGCAACCGGGTCGGTGAAATCATCATACG
GGGAGGTGACCACAACTTTCTACCAGAGATTCAACTATGTTAACAGCAATGTGTATACCAGCAATGGCACTGTCCAAGTG
GTGAACCAAACGATTGATGCAAAGTCTGGTGTTTTTGTCAAGGATGCTTCTGCTGTTCTTCTCTCGGAGGAAGTTCACAA
GGTGTTTCCGCTGTATGTCTACACTGGAACATCAGACCAGGTGGGCGACGAGTACTCACTGATTTCACTTGTCAAATTGG
GCATCAGCGAGAAGAGTGTCTTAGGTGGGAAGTTGGGGTTCTCGTACCGCTCTCTGCGGAATGCACAGTCAGCACGAGGC
ACTATGAAGGTCAAGAAGAATTTGGTGGTTAGTGGACTGGGAAAGACACATCAGGTGTACAAATATGTGGGTACTGATGG
ATGCTACTTCAGGGATGTGAGCAGCAAGAATTACACTATAATTTCTGACAACTCTGGTGGTTCTTGCTCAAAGGGATC--
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--------------------------------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-------------------------------------S---S-S--------------------------
--------------------S------------------S-----S---------------------S------------
--------------SSSSSS------------------------------------------------------------
--------------S------------S--------------S-------------------------------------
S-----S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S---------------------------S------------------------------------------S------
S---------------------------------------------------------------------------S---
S-----------------------------------S-------------------------------------------
--------------------------------------------------------------S-----------------
---------------------SS----------------------------------------S----------------
--------------S----------SS-S-------S-------------------------------------------
------------------------------------------------------------------S-------------
----------------------------------------------------------------------------S---
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-----------------S-----S-----------------------------------------------------S-S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
------------------------------------------------------------S-------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S---------------------------------S--------S
------------------S-------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S-------------S----------------------
--------------------------------------------------------------------------------
-S-----------------------S----------------------------------------------------S-
------S-------S------------------------------------------------------S----------
--S----------------------------------------------------------S------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
----S-------------S-------------------------------------------------------------
-----------------------S----------S-------------------------------S-------------
S-----SSS-------------------------------------------------------------------S---
----------SSSSS----------S------------------------------------------S----S------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------S-------------SS----S----------
--------------------------------------------
>forward_903
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---TGACATGTGGGCCTGAAACT---------------------------------------------------------
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--------------------------------------------
>reverse_2082
--------------------------------------------------------------------------------
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-TGGCAAGGAGCACAATTTTGG----------------------------------------------------------
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--------------------------------------------
>forward_1968
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----------------------------CTGTTTGGCCGTTCACTGTT--------------------------------
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--------------------------------------------
>reverse_3135
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--------------GTTGCTGCGTCTGTTCCAAT----------------------------------------------
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--------------------------------------------
