>input_sequence_43762
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----------------------------------------ATGGTCGTCCTCGCCCCCGCCTCCTCCTTCCACCACCAGA
GGGCCGCTGCTGCTGCCGCCGCGGCGGCCGACGGCGCCGACCAAGGGTTCGCGCTCCTCTCCGCGGGCCAGTGCGGGCTC
GCCGACCCTGGCGCTCCCAAGTCCGGCAGCGCCATCCAGTTCTGGCAATCGCACTCGCAGCCCCCCGCGACGCCGCCCGC
GGTTGCCCCCGCCGACAAGAAGCAGGTGGCCTCCGCGGTGGACTACGGCGGCGTCTCCTCCGGATCCGGCGGCTCCACCA
CGTGCAGCGACTGCGGCAACCAGGCGAAGAAGGACTGCCCTCACCAGCGATGCCGGACGTGCTGCAAGAGCCGCGGCTTC
GACTGCACCACGCACGTCAGGAGCACCTGGATCCCGGCCGCCCGGCGCCGCGAGAAGCACCCGCTCGGCGGCGACCTTTC
CCCTCCCGCCGCTCCTGCCACGGCGGCCACCAAGAAACCGCGGTTCCACTCGTCCCAGACCACGACCACGACCACCACCT
CTCGCACCTCCACCTCCAACGGCACCTCCTCGAGCCAACAAGGTGATCGACCAGCACAGACGCACGCACGCACATCCCAA
GTCTCAGCA-------CACATAATTCAAGAAACTTGGACACTAATCACATCTTCTAT-CCCATCCTCTGCAGACGCGCCG
TTCAGGGACAGCCTGCCGCGGCACGTGCGCGCGCCGGCGGTGTTCCGGTGCGTGCGGGTGACCTCCGTCGACGACGGCGC
GGACGAGTTCGCGTACCAGGCGGCGGTGAGCATCAACGGCCACATGTTCAGGGGGTTCCTCTACGACCAGGGCGCCGACA
ACGGCCGCACCAGCAACGACGAGCCCAGCCACGCGCACGCGGCCGCAGTGCGTAGCATCTCCGACCTCCACCTCGGCAAC
GCCTCCGCGGTGCCGCCGGACATGTACAACACCGTCAGCGGGGCGCTCATTCTCGGCGGGATGGGCTATGGTAACACCAT
GAACTGAAAACTGTTACTCGTAGTGC---TAGCTAGTAAGCCTGGTGCAATAATGGTAG----CCATCTTGTTACTACAT
GTCACCTCATTTCTTTCATCTC-ACATCACCAGTAGTGGTACTACCCTGTCTTCCATTTTGCTGCTGCATGCTGTGTGCC
AGTGCCACAGCTAACTTCCAAGTCTTTTGATAGTAGTAGAAGTTGGAAAGAAAATGAAAGGAAAAGCAGTCAGTATTTCC
AAGGTAAACTTGCTGTACAACATGCTACTATCTGATTTCTC-TATGTGGCTGATGCTGTTGTGTTACCATTTTTTTTAAC
TTAACATGTTTGCATATGTTGGGAACTGCAAATCATATACAGTTAAAATCA--------------CCATGTTCTGTGGG-
-------------------------TCCTT---TGGAGTAA-AT-TTTTTAGACAAAACATTATTTGTAGTAATCACTTG
ACGCCATGGAGAGGTTGATGGTAGTAGTACTATTGTTAA-TTTGACAGCTGAAAAGTTTGACTCTTTGATGCTCTTCCTA
GTTCCCACGCCATCGACCACTTCATTTCATCCTCTTGCGTGCTATGGCTTCCGAATT---GCCAATCTTGTTTACCTTGT
TCAGCTAG---TA----GCACGTATACTCTACTATCTCTTTCCCAAATTTACGGGGTTGGTAGGAATAGCTAGA-CATGG
GTTGGATTCTTACTTGCTTTGTATGTGCTGTTAAGCATCTTATCGGTGCATTGGAACTTGTAGCGGGAAAAAGAGAGCCA
ATGTGCAATGCATGTGGTGATAAGAATTCTTTTGCCCTCTTAAAATAA--------------------------------
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>chr1A_1_TraesCS1A01G241400
GCGGCAGCGGCAGCGGCAGAGCAGGAGGGAGAAG--AAGAGAAGGGGAGCCGGGCGGGCGCGTCAGTGAAAGCTGCCAGC
AGGCTGCCGCGCTGCGTGCCCGGTGC----GGCGCCCCCACAAGAAGTCTCGATCCCCCACTGGGCGCAGCCGCAGGCGC
AGCGAGCGAAAGATGAGATCCCGTGGTCGATCAGAG--------------GAATTTTTCAGCCGCAGACCCCACCCGCAG
CCACTTCTTCAGACCTCACACACGCTGAA-------GCAGCACCCGCCCGGCCCCTCCCTC-----------CTCTCCTA
TCTTCACCAGCACACAGCATACACATGCTCCCTCTCTCTCACACACACTCCTTTGTCCTGAGG-AAGTAGAGTGATAAAG
AACACAA-------------GTGTCCTGTAGGCCGTAGGTGTATACACACACAGACAGATACTCCAAAAGGGAGGAGGAG
AGAGAGGAGGCTACCTACGTAGCAAGCTATGCTAACCTAG----GGTAGGCTCTAGAGACTAGAGAGAGGGTAGCTAGCT
AGCTAGGGTAGCTAGGTGGTAGTAGGGTAGAGTCTTTTGCGTTTTCTTTTCTTTACTCTTGGATGCCCCTTCCTTCGCTG
GGAAGAGAGATTCTTCTTTAAAGTGGATGGAGAGGAGGGGTTTCCGGTCCGTCCGTAGGCTCACTCAGCTCAGCCGCTAG
CCGCTACGCTACCTCACTCTCAGAGGGAGCATCTTCGTCTGCTCTTGCGCCTTTTCCGCTCGC-----------------
--CTTTGGAGCTAAGCTTAGCCTTGATAGGTGCAGGTGCAGCAGCT----AGCTAGGGAGGGGGAGCTACTGCCCCC-GC
CAGCAAGCGTGGCGTCGTCGGGGCGGCGCTTCCCATCGGTCTCCGCGGCCTACGCGGACTGGATCGCGTCGGCCGGCGGC
GACGACCTCTCGCTCGGCTTCAATGCCGCGGGCGCGTCCGCCGCCGGGCTCTGGGCCCCCGCCTCGCGCCAGTCCGCCGC
TCTCAACTACGGGATAGCGGCGGCCAACGGTGATGTCGGCATGGTCGTCCTCGCCCCCGCCTCCTCCTTCCACCACCAGA
GGGCCGCTGCTGCTGCCGCCGCGGCGGCCGACGGCGCCGACCAAGGGTTCGCGCTCCTCTCCGCGGGCCAGTGCGGGCTC
GCCGACCCTGGCGCTCCCAAGTCCGGCAGCGCCATCCAGTTCTGGCAATCGCACTCGCAGCCCCCCGCGACGCCGCCCGC
GGTTGCCCCCGCCGACAAGAAGCAGGTGGCCTCCGCGGTGGACTACGGCGGCGTCTCCTCCGGATCCGGCGGCTCCACCA
CGTGCAGCGACTGCGGCAACCAGGCGAAGAAGGACTGCCCTCACCAGCGATGCCGGACGTGCTGCAAGAGCCGCGGCTTC
GACTGCACCACGCACGTCAGGAGCACCTGGATCCCGGCCGCCCGGCGCCGCGAGAAGCACCCGCTCGGCGGCGACCTTTC
CCCTCCCGCCGCTCCTGCCACGGCGGCCACCAAGAAACCGCGGTTCCACTCGTCCCAGACCACGACCACGACCACCACCT
CTCGCACCTCCACCTCCAACGGCACCTCCTCGAGCCAACAAGGTGATCGACCAGCACAGACGCACGCACGCACATCCCAA
GTCTCAGCA-------CACATAATTCAAGAAACTTGGACACTAATCACATCTTCTAT-CCCATCCTCTGCAGACGCGCCG
TTCAGGGACAGCCTGCCGCGGCACGTGCGCGCGCCGGCGGTGTTCCGGTGCGTGCGGGTGACCTCCGTCGACGACGGCGC
GGACGAGTTCGCGTACCAGGCGGCGGTGAGCATCAACGGCCACATGTTCAGGGGGTTCCTCTACGACCAGGGCGCCGACA
ACGGCCGCACCAGCAACGACGAGCCCAGCCACGCGCACGCGGCCGCAGTGCGTAGCATCTCCGACCTCCACCTCGGCAAC
GCCTCCGCGGTGCCGCCGGACATGTACAACACCGTCAGCGGGGCGCTCATTCTCGGCGGGATGGGCTATGGTAACACCAT
GAACTGAAAACTGTTACTCGTAGTGC---TAGCTAGTAAGCCTGGTGCAATAATGGTAG----CCATCTTGTTACTACAT
GTCACCTCATTTCTTTCATCTC-ACATCACCAGTAGTGGTACTACCCTGTCTTCCATTTTGCTGCTGCATGCTGTGTGCC
AGTGCCACAGCTAACTTCCAAGTCTTTTGATAGTAGTAGAAGTTGGAAAGAAAATGAAAGGAAAAGCAGTCAGTATTTCC
AAGGTAAACTTGCTGTACAACATGCTACTATCTGATTTCTC-TATGTGGCTGATGCTGTTGTGTTACCATTTTTTTTAAC
TTAACATGTTTGCATATGTTGGGAACTGCAAATCATATACAGTTAAAATCA--------------CCATGTTCTGTGGG-
-------------------------TCCTT---TGGAGTAA-AT-TTTTTAGACAAAACATTATTTGTAGTAATCACTTG
ACGCCATGGAGAGGTTGATGGTAGTAGTACTATTGTTAA-TTTGACAGCTGAAAAGTTTGACTCTTTGATGCTCTTCCTA
GTTCCCACGCCATCGACCACTTCATTTCATCCTCTTGCGTGCTATGGCTTCCGAATT---GCCAATCTTGTTTACCTTGT
TCAGCTAG---TA----GCACGTATACTCTACTATCTCTTTCCCAAATTTACGGGGTTGGTAGGAATAGCTAGA-CATGG
GTTGGATTCTTACTTGCTTTGTATGTGCTGTTAAGCATCTTATCGGTGCATTGGAACTTGTAGCGGGAAAAAGAGAGCCA
ATGTGCAATGCATGTGGTGATAAGAATTCTTTTGCCCTCTTAAAATAACATATGCAGCTGATACTCTAGTAAATTACTTG
GGTCACGATCATGGAAGCCAATAATGGTACAGTGCTCCATACATTACCCTTGGCCTGTTTGCTAG---TAGTAGCTGCTT
GTTAACAATATGATGAAGGGACATCTTCACTTAATCTTTTGTTGCGAGCCCCCATATTTATTCCCCCTGCTGCCGGATCC
CAAATCCAGAATGAAAACATGCACCCCTCTGTTTCATAATATAAGATGTTTTTTCAAGCTAACATGGTTTATAAAAATA-
----TCTTATATTATGAGACGGATGAAGT---------------------------------------------------
----------------ACTAAGGAGTGGCCATATCTCAATGAACACAGGACTAAATTTGTCTCATCAAGTACAGTGATAG
AGATATATTTCCGATCAAGATTTTTCATCCATTCCATACTTGTAAGAATCTCTAACTTTGATCAGATTGTTCTTAGCGGC
GAGAAATAACAATATCATATTTTTATGGGATTTCTTTTCTCAATTTTTTTTAATGAGATTTGTTAGTTTCAGTCTGA-TT
TTGTCTTTCTTCATTCCTAAGCAGGCCAAGTTATTACACAACAAAGTCATATTGTGCTGTGGATCTATTGACTCTAAAGC
TTGCATAAAGAAGTTTTCTGTAACTTCAG-TTTAGGAGTGCAAATTACAAATGATTTATGAAAAT-CACTATACCTAATT
TTTCTTGCATGAGAAACCAACGATGTTTAGATCTGTATCGTAAGTTTATGGGTGTACCGAAGCACTGCTCTTTGCAGATT
TAAAGTACTTCTAGGATGTCTACTATGTATTGAAAAATATATCAGTTCGGTTCCTCTAAGATTGGCAGGTGATCATTGGA
TCAAAGGAAATAATAAATAGATAAAGAACCACGGGGTTATTTTTTTGGCTATTTCCACCTTGTTGTGTCATGTCAAATGT
GAGTTTGGTCGATTTGCTTGAGCCACCGCGGCTTGAGGACGAAAATTATGCTGTGGTAGCTGGTCGAAGGGGTTGGGTAA
GCCATC
>chr1D_7
------GCGGCAGCGGCAGAGCAGGAGGGGAGAAGAAGAA----GGGAGCCGGGCGGGCGCGTCAGTGAAAGCTGCCAG-
-----GCCGCGCTGCGTGCCCGGTGCATGCGGCGCCCCCACAAGAAGTCTCGATCCCCCACTGGGCGCAG------GCGC
AGCGAGCGAAAGATGAGATCCCGTGGCCGATCACAGCCGG-CGCGCAGAGGAATTTTTCAGCCGCAGACCCCACCCGCAG
CCACTTCTTCACGCTGAAGCAGC-------------GCAGCACCCGGCCGGCCCCTCTCTCCTTCTCTGCTTCTCTCCTA
TCATCACCAGCACACAGTATACACACG----CTCTCTCCCTCTCACACTCCGTTGTCCCGCGGAAAGTAGAGGGATAAAG
AACACAAGCGGCTAGCCCCTGTGTCCTGTAGACCGTAGGTGTATACACACACA----GATACTCCAAAAGGGAGGAGGAG
AGAGAGAAGGCTACCTA----GCAAGCTATGCTAACCTAG----GGTAGGCTCTAGAGACTAGAGAGAG----GCTGGCT
AGCTAGGGTAGCTAGGTGGTAGTAGGGTAGAGCCTTTTGTGTTTTCTTTTCTTTACTCTTGGATGCCCCTTCCTTCGCTG
GGAAGAGAGATTCTTCTTTAAAGTGGA----GAGGAGGGGTT-----TCCGGCCGTAGGCTCACTCAACTCAGCTGCTAG
CCGCTACTCCTCAGA----------GGAGCATCTTCGTCTGCTCTTGCGCCTTTTCCGCTCGCTCGCTGCCTGCCTGCCT
GCCTTTGGAGCTAAGCTTAGCCTAGGTAGGCGTAGCGGCT--AGCTAGCCAGCCAGGGAGGGGAAGCTACTGCCCCC-AC
CAGCAAGCGTGGCGTCGTCGGGGAGGCGCTTCCCATCGGTCTCCGCGGCCTACGCGGACTGGATCGCGTCGGCCGGCGGC
GACGACCTCTCGCTCGGCTTCAATGCCGCTGGCGCGTCCGCCGCCGGCCTCTGGGCCCCCGCCTCGCGCCAGTCCGCCGC
GCTCAACTACGGGATAGCGGCGGCTGCAGGTGATGTCGGCATGGTCGTCCTCGCCCCCGCCTCCTCCTTCCACCACCAGA
GGGCCGCTGCTGCTGCCGCGGCG---GCCGACGGCGCCGACCAAGGGTTCGCGCTCCTCTCCGCGGGCCAGTGCGGGCTC
GCCGACCCTGGCGCTCCCAAGTCCGGCAGCGCCATCCAGTTCTGGCAGTCGCACTCGCAGCCCCCCACGACGCCGCCCGC
AGCTGCCCCCGCCGACAAGAAGCAGGTCATCTCCGCGGTGGACTACGGCGGCGTCTCCTCCGGATCCGGCGGCTCCACCA
CGTGCAGCGACTGCGGCAACCAGGCGAAGAAGGACTGCCCCCACCAGCGATGCCGGACGTGCTGCAAGAGCCGCGGCTTC
GACTGCACGACGCACGTCAGGAGCACCTGGATCCCGGCCGCCCGGCGCCGCGAGAAGCACCCGCTCGGCGGCGACCTTTC
CCCTCCCGCCGCTCCTGCCACGGCGGCCACCAAGAAACCGCGGTTCCACTCCTCCCAGACCACCACCACCACCACCCCCT
CTCGCACCTCCACCTCCAACGGCACCTCCTCGAGCCAACAAGGTGATCGACCAGCACAGACGCACGCACGCACATCCCAA
GTCTAAGCA-------CCCACAATTCAAGAAACTTGGACACTGATCACATCTTCTACCCCCATCCTCTGCAGACGCGCCG
TTCAGGGACAGCCTGCCGCGGCACGTGCGCGCGCCGGCGGTGTTCCGGTGCGTGCGGGTGACCTCCGTCGACGACGGCGC
GGACGAGTTCGCGTACCAGGCGGCGGTGAGCATCAACGGCCACATGTTCCGGGGGTTTCTCTACGACCAGGGCGCCGACA
ACGGCCGCGCCAGCAACGACGAGCCCAGCCACGCGCACGCGGCCGCCGTGCGTAGCATCTCCGACCTCCACCTCGGCAAC
GCCTCCGCCGTGCCGCCGGACATGTACAACACCGTCAGCGGGGCGCTCATTCTCGGCGGGATGGGCTATGGTAACACCAT
GAACTGAAAACTAT------TAGTGCTAGTAGCTAGTAAGCCTGGTGCAATAATTGTAGACATCCATCTTGTTACTACAT
GTCACCTCATTTCTTTCATCTC-A--TCACCAGTAGTGGTACTACCCTGTCTTCCATTTTGCTGCTGCATGCTGTGTGCC
TGTGCCACAGCTAACTTCCA-GTCTTTTGT---TAGTAGAAGTTGGAAAGAAAATGAAAAGAAAACCAGTCAGTATTTCC
AAGGTAAACTTGCTGTACAACATACTACCATATGGCTTTTCTTATGTGGCTGATGCTGTTGTGTTACCATTTTTTT--AA
T-------TTTGCATATGTTGGGAACTGCAAATCATATACACTTAAAATCA--------------CCATGTTCTGCGGG-
-------------------------TCCTTCTTTGGAGTAA-TTCTTTTTAGACAAAACCTCATTTGTAGTAATCACTTG
ACGCCATGGAGAGGTTGATGGTAGT---ACTATTGTTAAATTTGGCAGCTGAAAAGTTTGACTCTTTGATGCTCTTCCTA
ATCCCCACGCTATCGACCACTTCACTTCATCCTCTTGCGTGCTATGGCTTCCGAATT---GCCAGTCTTGTTTACCTTGT
TCAGCTAGTACTA----GCACGTATACTCT--TATCTCTTTCCCAAATTTACGGGGTTGGTAGGAATAGAAAGACCATGG
GTTGGATTCTTACTTGCTTTGTATGTGCTGTTAAGCATCTTATCCGTGCATTGGAACTTGTAGCGGGAAAAAGAGAGCCA
ATGTGCAATGCATGTGGTGATAAGAATTCTCTTGCCCTCTTAAAATAA--TATGCAGCTGA-----TAGTAAATTACTTG
GGTCACGATCATGGAAGCCAATAATGGTACAGTGCTCCATGCATTAGCCTTGGCCTGTTTGCTAGTCCTAGTAGCTGCTT
GTTAACAATATGATGAAGGGACATCTTCTCTTAAACTTTTGTTGCGAGCCCCCATATTTATTCCCCCTGCTGCCGGATCC
CAAATCCAGAATATACATG---ACCCCTTTGTTCCGTAATATAAGATGTTTT-CCAAGCTAACATAATTTCCGATCAAGA
TTTTTCATATATATTCTGTCTGAGCAAGTACACATAGAGATATATTTCCAAGCTAACAAAGGGGTACACATAGAGATATA
TTCCCCCTGCTTGAGGACTAAGGAGTGGCCATATCTCAATCAACACAGAACTAAATCTGTCTGAGCAAGTACAC--ATAG
AGATATATTTCCGATCAAGATTTTTCATCCATTCCATACTTGTAAGAATCTCTAATTTTGATCAGATTATTCTTAGCAGC
GAGAAATAACAAGACCATATTTTTATG----------------------------ATATTTGTTAGTTTCAGTCTGA-TT
TTT--TTTCTTCATTCCTAAGCAGGCCAAGTTATTACACAACAAAGTCATCTTGTGCTGCGGATCTATTGACTGTAAAAC
TTGCATAAAGAATTTTTCTGTAACTTAAGTTTTAGGAGTGCAAATTACAAATGATTTCTGAAAATGCACTATACCTAATT
TTTCTTGCATGAGAAACCAACGATGTTTAGATCTGTATCGTAAGTTTGT--------------------------AGATT
TAAAGTACTTCTAGAATGTCTACTATGTATTGAAAAATATATCAGTTCGGTTCGTCTAAGATTGGCAGGTGATCATTGGA
TCAAAGGAAATAA---ATAGATAAAGAACCAGAGGGTTAATTTGGTGGCTATTTCCACCTTGTTGTGTCATGTCAAATGT
GAGTTTGGTCGATTTGCTTGAGTCACCGCAACTTGAGGACGAAATTTATGCTGTGGTAGCTGGTCGAAGGGGTTGGGTAA
GCCATC
>chr1B_7
------GCGGCAGCGGCAGAGCAGGAGGGAGAAG--AGAA----GGGAGCCGGGCGGGCGCGTCAGTGAAAGCTGCCAG-
-----GCTGCGCTGCGTGCCCGGTGC----GGTGCCCCCACAAGAAGTCTCGATCCCCCACTGGGCGCAG------GCGC
AGCGAGCGAAAGATGAGATCCCGTGGCCGATCGCAGCCGGTCGCGCAGAGGAATTTTTCAGCCGCAGACCCCACCCGCAG
CCACTTCTTCAGACCTCACACACGCTGAACGCTGAAGCAGCACCCGGCCGGCCCCTCTCTCCTTCTCT--------CCTA
TCTTCACGAGCACACAGCATACACACG----CTCTCTCCCTCTCAC-----GTTGTCCTGTGGAAAGTAGAGGGATAAAG
AACACAAGCGGCTAGCCCCTGTGTCCTGTAGGCCGTAGGCG--TACACACACA----GATACTCCAAAAGGGAGGAG---
--AGAGAAGGCTACCTA----GAAAGCTATGCTAACCTAGCTAGGGTAGGCTGTAGAGACTAGAGAG-------------
----AGGGTAGCTAGGTGGTAGTAGGGTAGAGTCTTTTGTGTTTTCTTTTCTTTACTCTTGGATGCCCCTTCCTTCGCTG
AGAAGAGAGATTCTTCTTTAAAGTGGATGGAGAGGAGGGGTT-----TCCATCCGTAGGCTCACTCAACTCAGCTGCTAG
CCGCTACTCCTCAGA----------GGAGCATCTTCGTCTGCTCTTGCGCCTTTTCTGCTCGCTCGCTGCCTGCCTGCCT
----TTGGAGCTAAGCTTAGCCTAGGTAGGCGTAGCGGCT--AGCT----AGCCAGGGAGGGGAAGCTACTGCCCCCAGC
CAGCAAGCGTGGCGTCGTCGGGGAGGCGCTTCCCATCGGTCTCCGCGGCCTACGCGGACTGGATCGCGTCGGCCGGCGGC
GACGACCTCTCGCTCGGCTTCAATGCCGCTGGCGCGTCCGCCAACGGCCTTTGGGGACCAGCCTCGCGCCAGTCCGCCGC
GCTCAACTACGGGATAA---CGGCTGCTGGTGATGTCGGCATGGTCGTCCTCGCCCCCGCCTCCTCCTTCCACCACCAGA
GGGCCGCTGCTGCTGCCGCCGCGGCG---GACGCCGCCGACCAAGGGTTCGCCCTCCTCTCCGCGGGGCAGTGCGGGCTC
GCCGACCCTGGCGCTCCCAAGTCCGGCAGCGCCATCCAATTCTGGCAGTCGCACTCGCAGCCCCACACGACGCCGCCCGC
CGCTGCCCCCGCCGACAAGAAGCAGGTCGTCTCCGCGGTGGACTACGGCGGCGTCTCCTCCGGATCCGGCGGCTCCACCA
CGTGCAACGACTGCGGCAACCAGGCGAAGAAAGACTGCCCCCACCAGCGCTGCCGGACGTGCTGCAAGAGCCGCGGCTTC
GACTGCACGACGCACGTCAGGAGCACCTGGATCCCGGCCGCCCGGCGCCGCGAGAAGCACCCGCTCGGCGGCGACCTTTC
CCCTCCCGCCGCTCCTGCCACGGCGGCCACCAAGAAACCGCGGTTCCACTCCTCCCAGACCACCACCACCACCACCACCT
CTCGCACCTCCACCTCCAACGGCACCTCCTCGAGCCAACAAGGTGATCGACCAGCACAGACGCAC--------ATCCCAA
GTCTCAGCAGTCAGCACACATAATTCAAGAAACTTGCACACTAATCACATCTTCTAT-CCCATCCTCTGCAGACGCGCCG
TTCAGGGACAGCCTGCCGCGGCACGTGCGCGCGCCGGCGGTGTTCCGGTGCGTGCGGGTGACCTCCGTCGACGACGGCGC
GGACGAGTTCGCGTACCAGGCGGCGGTGAGCATCAACGGCCACATGTTCAGGGGGTTTCTCTACGACCAGGGCGCCGACA
ACGGCCGCACCAGCAACGACGAGCCCAGCCACGCGCACGCGGCCGCCGTGCGTAGCATCTCCGACCTCCACCTCGGCAAC
GCCTCCACGGTGCCGCCGGACATGTACAACACCGTCAGCGGGGCGCTCATTCTCGGCGGGATGGGCTATGGTAACACCAT
GAACTGAAAACTAT------TAGTGC---TAGCTAGTAAGCCTGGTGCAATAATGGTAGACATCCATCTTGTTACTACAT
GTCACCTCATTTCTTTCATCTCAA--TCACCAGTAGTGGTACTACCCTGTCTTCCATTTTGCTGCTGCATGCTGTGTGCC
GGTGCCACAGCTAACTTCCAAGTCTTTTGT---TACTAGAGGTTGGAAAGAAAATGAAAGGAAAACCAATCAGTATTTCC
AAGGTAAACTG-------------------------------------------GCTGTTGTGTTACCATTTTTTT--AC
TGAACATGTTTGCATATGTTGGGAACTGCAAATTATATACAGTTAAAATCA--------------CCATGGTCTGTGGG-
-------------------------TCCTTCTTTAGAGTAA-TT-TTTTTAGACAAAACCTTATTTGTAGTAATCACTTG
ACGCCATGGAGAGGTTGATGGTAGC---ACTATTGTTAA-TTTGGCAGCTGAAAAGTTTGACTCTTTGATGCTCTTCCTA
GTCCCCACGCTATCGACCACTTCACTTCATCCTCTTGCGTGCTATGGCTTCCGAATT---GCCAGTCTTGTTTACCTTGT
TCAGCTAG---TAGCACGTATACT-------CTATCGCTTCCCCAAATTTACGGGGTTGGTAGGA-TAGCAAGACCATGG
GTTGGATTCTTACTTGCTTTGTATGTGCTGTTAAGCATCTTATCCGTGCATTGGAACTTGTAGCGGGAAAAAGAGAGCCA
ATGTGCAATGCATGTGGTGATAAGAATTCTCTTGCCCTCTTAAAATAA--TATGCAGCTGA-----TAGTAAATTACTTG
GGTCACGATCGTGGAAGCCAATAATGGTACAGTGCTCCATACATTAGCCTTGGCCTGTTTGCTAGTCCTAGTAGCTGCTT
GTTAACAATATGATGAAGGGACATCTTCTCTTAAACTTTTGTTGCGAGCCCCCATATTTATTCCCCCTGCTGCCGGATCC
CAAATCCAGAATGAAAACATGTACCCCTTTTTTCC--------AGGTGTTTTTCCGAGCTAACATATTTTGCAAAAATAA
AACGTCTTATATTGTGGGACGGATGAAGT---------------------------------------------------
----------------ACTAAGGAGTGGCCATATCTCAATCAACACAGAACTAAATCTGTCTCCGCAAGTACACTTATAG
AGATATATTTCCGACCAAGATTTCGCATCCATTCCATACTTGTAA-AATCTCTAATTTTGATCAGATTGTTCTTAGCTGC
GAGAAATAAAAAGATCATATTTTTATG----------------------------AGATTTGTTAGTTTCAGTCTGTTTT
TTT--TTTCTTCATTCGTAAGCAGGCCAAGTTATCACACAATAAAGTCATCTTGTGCTGTGGATCTGTTCTACAACTTC-
---------------------------AGTTTTAGGAGTGCAAATTACAAATGATTTCTGAAAATGG--TACACCTAATT
TTTCTTCCATGGGGAACCAACGATGTTTAGATCTGTATCGTAAGTTTATGGGTGTACCGAAGCACTGCTCTTTGTAGATT
TTAAGCACTTCTAGAATGTCTACTATGTATTGAAAAATATATCAGTTA--------------------------------
-----------AA---ATAGATAAAGAACCACAGGGTTAATTTGGTGGCTATTTCCACCTTGTTGTGTCATGTCAAATGT
GAGTTTGGTCGATTTGCTTGAGCCACCGCAACTTGAGGACGAAATTTATGCTGCGGTAGCTGGTCGAAGGGGTTGGGTAA
GTCATC
>chr2D_2143
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------------------------------------------------------------------------------CC
AGTGCCACAGCTAACTTCCAAGTCTTTTGA---TAGTATAAGTTGGAAAGAAAATGAAAGGAAAACCAATCACCATGTTC
CATGGGTAA---------------------------TTTTT-TTCGTGGCTGATGCTGCGAACCATGTT-----------
----------------------------CAAATCATATACAGTTCAAAGTGGCTCATGCTGCAACCCATGTTTCTTGGTT
TTTCAAAGTGGCTGATGCTGTTAGTTTCTTCTTTGGAGTAATTT-TTTTTAGACAAAACATTATTTGTAGTAAGCACTTG
ACGCCATGGAGAGGTTGATAGTAGT---ACCATTGTTAA-TTTGGCAGCTGAAAAGTGTGACTCTTT-ATGCTCTCCCTA
GTCCCCACGCCATCGACCACTTCACTTCATCCTCTAGCGTGCTATGGCTTCCGAACTGCGGCCAGTCTTGTTTACCTTGT
TCAACTAG---GA----GTATACT-------CTATCTCTTTCCCAAATTTACGGGGTTGGTAGGAATAGCAAGGCCAGGG
GTTGGATTCTTACTTGCTTTGCATGTGTTGTTAAGCATCTTATCCATGCATTGGAACTTGTAGCAGGAAAAAGAGAGCCA
ATGTGCAATGCATGTGGTGATAACAATTCTCTTGCCCTCTT---------------------------------------
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>chr5D_2239
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--------------GTACAACATGCTACTATCTGGTTTTTC-TATGTGGCTGATGCTATTGTGTT-CCATTTTTTT--AC
TGAACATGTTTGCATATGTTGGGAACTGCAAATCATATACAGTTCAAATCA--------------CCATGTTCCGTGGG-
-------------------------TTCTTCTTTGGAGTAA-TT-TTTTTAGACAAAACATTATTTGTAGTAAGCACTTG
ACGCCATGGAGAGGTTGATAGTAGT---ACCATTGTTAA-TTTGGCAGCTGAAAAGTTTGACTCTTT-ATGCTCTCCCTA
GTCCCCACGCCATCGACCACTTAACTTCATCCTCTTGCGTGCTATGGCTTGCGAACTGCCGCCAGTCTTGTTTACCTTGT
TCAGCTAG---GA----GTATACT-------CTATCTCTTTCCCAAATTTACGGGGTTGGTAGGAATAGCAAGGCCATGG
GTTGGATTCTTACTTGATTTGTATGTGTTGTTAAGCATCTTATCCATGCATTGGAACTTGTAGCGGGAAAAAGAGAGCCA
ATGTGCAATGCATGTGGTGATAACAATTCTCTTGCCCTCTT---------------------------------------
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>chr4D_2239
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--------------GTACAACATGCTACTATGTGGTTCTTC-TATGTGGCTGATGTTGTTGTGTTACCATTTTTTT--AC
TGAACATGTTTGCATATGCTGGGAACTGCAAATCATATACAGTTCAAATCA--------------CCATGTTCCGTGGG-
-------------------------TTCTTCTTTGGAGTAA-TT-TTTTTAGACAAAACAATATTAGTAGTAAGCACTTG
ACGCCATGGAGAGGTTGATAGTAGT---ACCAATGTTAA-TTTGGCAGATGAAAAGTTTGACTCTTT-ATGCTCTCCCTA
GTCCCCACGCCATCGACCAATTCACTTCATCCTCTTGCGTGCTATGGCTTCCGAACTGCCGCCAGTCTTGTTTACCTTGT
TCAGCTAG---GA----GTATACT-------CTATCTCTTTCCCAAATTTACGGGGTTGGTAGGAATAGCAAGGCCATGG
GTTGGACTCTTACTTCCTTTTTATGTGCTGTTAAGCATCTTATCCATGCATTGGAACTTGTAGCAGGAAAAAGAGAGCCA
ATGTGCAAGGCATGTGGTGATAACAATTCTCTTGCCCTCTT---------------------------------------
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>SNPs
SSSSSS-------------------------------SS-SSSS-----------------------------------S
SSSSS-----------------------------------------------------------------SSSSSS----
--------------------------S------S----------------------------------------------
----------------------------------------------S----------S----------------------
-------------------------S-SSSS-------S-S-S--------S--------S-----------S-------
-----------------------------------------------------SSSS-----------------------
------S----------SSSS------------------------------------------------SSSS---S---
---------------------------------------S----------------------------------------
------------------------------------------SSSSS--------------------S------S-----
-------S-SS-SSSSSSSSSSSSS-------------------------------------------------------
-----------------------S-S----S-S--SS--SSS-----------S---------S----------------
-----------------------S--------------------------------------------------------
-----------------------------S-----------------S--------------------------------
S-----------------------SSSS----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S------------------S-------------
S-S------------------------S-S--------------------------------------------------
----------------------------------------S---------------------------------------
--------S-----------------------------------------------------------------------
---------------------------------------------------S-----------S-----S----------
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---------------------------------------------------------S----------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
------------S-SSSSSS------------------------------------------------------------
------------------------SS------------------------------------------------------
------------------------------SSS--------------------------------S--------------
----------------------------------S---S-------------------------------------SS--
-S------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-------------------------SSS----------------S-----------------------------------
--S---------------------S---------------------------------------S---------------
------------------------------S---------------------------------------S---------
--------------------------------------------S-----------------------------------
------------------------------S-----------------SS-----------SSSSS--------------
----------------------------------------------S---------------------------------
----------------------------S-----S---------------------------------------------
---------------------S------S----S-S-----------------S-----------SS---SS--------
-------------S--S---------------------------------------------------------------
----------------------------------------S-------S-------S-------S--------S-S----
-------------------------------------------------------S---------------------S--
------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
--SSS---------------------------------------------S----------------------S----S-
------------S-------------S------------------------------S----------------------
--------------------------------------------------------------------------S-----
--------------S--------------------------------------S--------------------------
-------------SSS----------------S------S---SS-----------------------------------
-----------------------------SS-------------S-----------------------------------
------
>forward_840
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CCTTGATAGGTGCAGGTGCA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>reverse_2845
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GGTGCATTGGAACTTGTAGCG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>forward_2665
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CACGCCATCGACCACTTCAT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>reverse_3885
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTGGCTATTTCCACCTTGTTGTG-------------
--------------------------------------------------------------------------------
------
