>input_sequence_43753
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------------------------------------------------------------------GCTCTTGGTTGGTT
TCTTGTGCGCATGGAT-------TCGATGGAGTAGTCGTATCTCACAGCGAGCGCCTC--------TGTCTAATCTGACT
GCAGGAAGGAAG-------AAGGAGAAAGAAAATGGCGGACGGCGGCGGCA---GCGACTGGGAGGTGGTGTCGCTCACG
GCCTCCACCTACGCAGCCTCACCAGGGCCAATCCCAATCTCGGCCCCCATCCACGACGCCGCTGACAAAACAGAGTCGCC
TCTTCTTCTCCTCCCAAATCCTCCCGCTCCCCCTGCACATTTCTTCATGTCCCAGCACTTCAATCTCCCA---CTTTTTA
CTACTACCCATCTTGAGAATAACAATGGAAGCCAAGACCTA---GAATCCGGCCCTGCCGCTGCCGTGCCGGACGGCGAT
GATGC------------CGACCATCTCAACACGCCCC---GCCCAGAAAA---CCGCGACGGTGG------GAGGGACGA
TGTGC------------------CCGGCAATGGCCCGCACCTGCAGGTGGAAGGAGGAGGAGGGGGCGAGGAACTGCAGC
AAACCACCATGTTCTGCTCTCTTCCTAAAGACGCTACTGCAGGTGCAGATGCTGCTGCTGATGCCACGGATGCCACTGCT
GTCGGTTCTGCTACCCTGCCTGCTCCTGCTCCTGCTCCTGCCGCCACGGTGACGGTGGCTGCTCCTTCCGGCGGAGTGGG
CGCTTGCAA---TTGCAATGCT------------------------GCTCAGGCTCAGGCGTGGTGGGAGAAGACCTTCT
CCTTCCCGCGTCAAGATGGGAGTGGGAATGG---------CACACAGCC---CCTCGCCTTCCGCTTCGTCTTCGTCGCC
GGCAAACTGCAGCTTCAGGAAGAGGACCACCTCAGCGTCAGCCCTGTCCCTGAATTCG------------GCCAAACCCA
GGTACCAACTCAACTCCCCTCTGTTTTTCTTAGACCTACTCTGCTTTCTGCAACTGTATTCCATTCCA------------
-----G------------------TTTTCTGCAAGTGAGGCCGACATCTCATCTGTGCGTACTTGCTAGCCAAATAGAGT
AGACCGTAATAAGTACTCACTCCGTAAACTAATATAAGAGCGTTTAGAATACTAAAGTAGTGATCTAAACGCTCTTATAT
TAATTTACAGAGGGAGTACTAGGTAGCACCATTGTGTAGGTAGATAGATCATGAGAAACATACTCCCTCTGTTCACTTTT
ATAAGTCCTTGAAGACATTTCAGACAACATGCAAAGCAGCCTATTTTCAGTTGTCTGAAATGACTTATAAAAGTGAACGG
AGGGAGTAGT--------------------ATGTTGGTTCTGATGTACTA------------------------------
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------------------------------------------AACCTTTGCTTGTTGCAATTTGCAAATG-----CCGTG
CACCTGTTATATATGAATTCAGAACCTATGGTAACATCAGTTTTTTTTTCCTTCTTTTGCTGCGGAAAATTGTTTGTTTC
AGAAGATAAGCTGCACGGTGACTGAGCCGCTTGATCAGGCCAAGGTCAGCATGCTTGGTGGAGGAGGCCCTGTTGCTCAG
CAGGGGTAAATTAACTAACTACACAAGCTTCATTGCATGCTGCTGCTGCTGCTGATGATGATGATGATGATGGCGAAAAA
TA---TACTAGTATGGTAGCTAA----GTAGTAAGAATTTGATGATGACTTGGATCGATGATGATGACGAAAAGGGTGTG
GTGAATCTTCTTTCTACTTACTCTGATCCATGTGAGTGGAGTGGTAGTACTTAATTAGTAGCTAGGCAATGGAGTAATGA
GCATGTGTGTATGGGTGAGCACTAGTCCTGGTTAATTCTATCTATCTTGCTAGCTAGCTAAGCGTGGGCGTGGTGCTTGT
AAAATATAAAGTGTTGTGTTTAAG--------------------------------------------------------
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>chr4B_1_TraesCS4B01G000900
GGAACTTCGGTAACACATCCTCGTCTTCACCGGCTCCACTCTTGATTACCTCGTGCGTTTACTTGTGCAAGCTTATTTGT
GTTGTATCCCTTGCTTGCTTGTGTGCTAGCTATTGTTGCATCATATAGGTTGCTCACCTAGTTGCATATCTAGACAACCT
ACTTTGATGCAAAGTTTAATTTGGTAAAGAAAAGTATAAAAAGTGTTAGTTGCCTATTCACCCCCCTCTAGTCAACTATA
TCGATCCTTTCTCCCTTAGCACAAAAGAGGAAATCCTCCTCATCCGCGCCTGCTGGCACGACCTCTGGCGCCGTTCGTCA
CCGCACGCGTCACCCACGTGGAGGCGCGGGGCCGCGTGACTGGGCTGAACAACCCTTGACCTGCTGCCCCGGGAGGCCGC
CTCGCGAGAGGAACTTGCGAGGCTCTTGGTGGAGCCGCCTAGTCAGCTCAGGACGCCTGCTGATGGGGGCCTCATAAGGT
AAGGGCCTCGTGAGGGGTCCTGCTCGCGGCGATCGCTGGTGGGCCACTCCTTGGGCTCTTGATATGCGACGCGTCCTGAT
CTGAAGGCAGACGGGTTTGGGTATCCCCGGTTCCACGGGCCCGACAGTGGTGGGCCCACCTGCTCAGAGGCTGGCTTGGT
GGGCCCACTTGGTAGTAGCAGCAGGAGTAGTAGTAGCCTAGTAGGGCTAATTTATTTTATTTTATTTGACCGGGAAAATA
TCCATCCATCCATCCATCCATGATGTGCGTGAGAGGTTGGTGTGTGTAATAAGTTTGGCATTTC----TTTCACACAATC
AACTGCCCACCCACGCCACTCCACGCAAGG----AAGCAAACCGTCCGTCCCTATCCACTATCCACTTCTTCTTCTTCTT
CTC-----------------CTCTGCTTTGCTTCGCTGCCAAGCCATCCTCGGATCGCTTCTCTCCTCTCATCTCCTCTC
GCCGGCGACGACTCTCCGTTACCTA-CCCGCTCAGGTACGCGACCTCCCCTCCATTCTTTGTCATAGCTCTTGGTTGGTT
TCTTGTGCGCATGGAT-------TCGATGGAGTAGTCGTATCTCACAGCGAGCGCCTC--------TGTCTAATCTGACT
GCAGGAAGGAAG-------AAGGAGAAAGAAAATGGCGGACGGCGGCGGCA---GCGACTGGGAGGTGGTGTCGCTCACG
GCCTCCACCTACGCAGCCTCACCAGGGCCAATCCCAATCTCGGCCCCCATCCACGACGCCGCTGACAAAACAGAGTCGCC
TCTTCTTCTCCTCCCAAATCCTCCCGCTCCCCCTGCACATTTCTTCATGTCCCAGCACTTCAATCTCCCA---CTTTTTA
CTACTACCCATCTTGAGAATAACAATGGAAGCCAAGACCTA---GAATCCGGCCCTGCCGCTGCCGTGCCGGACGGCGAT
GATGC------------CGACCATCTCAACACGCCCC---GCCCAGAAAA---CCGCGACGGTGG------GAGGGACGA
TGTGC------------------CCGGCAATGGCCCGCACCTGCAGGTGGAAGGAGGAGGAGGGGGCGAGGAACTGCAGC
AAACCACCATGTTCTGCTCTCTTCCTAAAGACGCTACTGCAGGTGCAGATGCTGCTGCTGATGCCACGGATGCCACTGCT
GTCGGTTCTGCTACCCTGCCTGCTCCTGCTCCTGCTCCTGCCGCCACGGTGACGGTGGCTGCTCCTTCCGGCGGAGTGGG
CGCTTGCAA---TTGCAATGCT------------------------GCTCAGGCTCAGGCGTGGTGGGAGAAGACCTTCT
CCTTCCCGCGTCAAGATGGGAGTGGGAATGG---------CACACAGCC---CCTCGCCTTCCGCTTCGTCTTCGTCGCC
GGCAAACTGCAGCTTCAGGAAGAGGACCACCTCAGCGTCAGCCCTGTCCCTGAATTCG------------GCCAAACCCA
GGTACCAACTCAACTCCCCTCTGTTTTTCTTAGACCTACTCTGCTTTCTGCAACTGTATTCCATTCCA------------
-----G------------------TTTTCTGCAAGTGAGGCCGACATCTCATCTGTGCGTACTTGCTAGCCAAATAGAGT
AGACCGTAATAAGTACTCACTCCGTAAACTAATATAAGAGCGTTTAGAATACTAAAGTAGTGATCTAAACGCTCTTATAT
TAATTTACAGAGGGAGTACTAGGTAGCACCATTGTGTAGGTAGATAGATCATGAGAAACATACTCCCTCTGTTCACTTTT
ATAAGTCCTTGAAGACATTTCAGACAACATGCAAAGCAGCCTATTTTCAGTTGTCTGAAATGACTTATAAAAGTGAACGG
AGGGAGTAGT--------------------ATGTTGGTTCTGATGTACTA------------------------------
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------------------------------------------AACCTTTGCTTGTTGCAATTTGCAAATG-----CCGTG
CACCTGTTATATATGAATTCAGAACCTATGGTAACATCAGTTTTTTTTTCCTTCTTTTGCTGCGGAAAATTGTTTGTTTC
AGAAGATAAGCTGCACGGTGACTGAGCCGCTTGATCAGGCCAAGGTCAGCATGCTTGGTGGAGGAGGCCCTGTTGCTCAG
CAGGGGTAAATTAACTAACTACACAAGCTTCATTGCATGCTGCTGCTGCTGCTGATGATGATGATGATGATGGCGAAAAA
TA---TACTAGTATGGTAGCTAA----GTAGTAAGAATTTGATGATGACTTGGATCGATGATGATGACGAAAAGGGTGTG
GTGAATCTTCTTTCTACTTACTCTGATCCATGTGAGTGGAGTGGTAGTACTTAATTAGTAGCTAGGCAATGGAGTAATGA
GCATGTGTGTATGGGTGAGCACTAGTCCTGGTTAATTCTATCTATCTTGCTAGCTAGCTAAGCGTGGGCGTGGTGCTTGT
AAAATATAAAGTGTTGTGTTTAAGCAAGCAGACACTGATATTTCTTGTTACAAGATCACTAATTAAGCAGAGATCAGTAT
ATCTAGTCCCTCTACTCTGAACCAAGGTGATCTCAAGGAGTATATTTGTATGTATGTTGAATGGCCCTAAGTGAAGGGCA
TGCAGACGGTGAAATATAGTTAGTACTAGTACTAGTATGAACTTCGTATCTGCATCTGGCAGTCTGGTTGCCTGTTGAAG
TTGAACGCAAGTCAAAAGGAAACATGGGCCAGAAAGTTTGACCTAGTCATGCATACGACTATGCCAATGGAACGGGTCAA
CATAGACATTTTCGGTATTCGGTATGTCTACGGAAAAACTTTGAAAAGGGATCCTTTCCCCCCTTCCTCGTGACCGCGTC
GCCCCCGCCCCCGGCGCCTCCTCCCTGAA------------CCCTCCCTCCTTGCCGCCGTCCGGTGTCGGGCCTAGCAC
GGGTGGCGGCTGCCGCTGGCCATT--CCCCTCTGGCCGCGCTGACGCGGGGCGGTGCGGTGCCGC------GGGGTGCTC
CTAGGCGGCGGCAGTGCTTTCCGGCATGGTGGCGTGTGATCTACTAGGTGGCGGCGCTGCCGT-----------------
-----------TGGCGGCGCCCGCTCGGCCTAGATCTGGGCCCTTCGGGTCCCATCTGGGTCTTGGCGGGCCGGCGGCGG
GGAGGGTCGTCGGCGTGGCTTCCGGGAAGCGGGGGAGCGGCGGTG----------G---------GCTAGTGGTGCTGGT
GCCGCCCTGCTGCAGCGTGGCCAAC-GGGGCTTTGCGGGCCCAATTTGGGCCTGGCTGGGCCAGGAGTGGCTTGGTATGC
CCTGTTGCTGCGTTTGGACGCAC-CCGCGATGGTGCCGGAGGCACGGGCCTCCCCCACGATGGCGGTGGAGGTAGTTCCC
TCCCGCGCGGCTCCGGTGCTGCGGCTCCCGTCGCCTGGTGTGTCTCTCTCCATCCTCTTGGTCTTGTGCTGGTGATCTCA
GTGAGGTGGCGTGGGTGGCGTCAAGATCGCGGTGGTGCATGCTGGTGGGCGGC
>chr4D_693
TAA-----------------------------------------------------------------------------
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-------------------------------------------------------TTTATTTTATTTGACCGAGAAAATA
TCCATCCATCCATCCGCGGT--------GTGAGAGGTTGGTGTGTGTAATAAGTTTGGGATTTCTTTGTTTCACACAATC
AACTGCCCACCCACGCCACGCAAGG-AAGC----AAGCAAACCGTCCGTCCCTATCCATCCATCC--ACTTCTTTCTCCT
CTTCATCCTCTTCCGCTCCGCTCTGCTTTGCTTCGCTGCCAAGCCATCC----ATCGCTTCTCTCCT------TCCTCTC
GCCGGCGACGACTCTCCGCTACCCGCAGGTAGGTGT------------CCTCCATTCTTGTA-----CTCTT-----GTT
TTTTGTGCTCGCTCATGGATCCATCGATGGAGTACTCCTATCTGACAGGGAGCGCCTCCGTTCCTCTGTATAATCTGACT
GCAGGAAGAAGG-------AGAGAGAAAGAAAATGGCGGACAGCGGCGGCA---GCGACTGGGAGGTGGTGTCGCTCACG
GCCTCCACCTACGCCGCCGCCCCAGGACCAATCTCG---------CCCATCCACGACACCGCTGACAAAGCAGAGTCGCC
TCTTCTTCTCCTCCCAAATCCTCCCGCTCCCCCTGCACATTTCTTCATGTCCCAGCACTTCAATCTGCCACCGCTTTTCG
---GTACCCATCTTGAGAATAATAGCGGAGGCCAAGAATTA---GAATCCGACCCTGCCA------TGGCGGACGGC---
GATGC------------CGACCATCTCAACATGCCCATCTGCCCAGAAAACTACCGCGACAGCGG------GAGGGATGA
T---------------------------------------CTGCAGGTGGAAGGAGGAGGAGGA---GAGGAACTGCAGC
GAACCACCATGCTCTGCTCCCTTGCT---GACGCTACTGCAGGTGCAGATGCTGCTGCTGATGCCACTG-----------
-------CTGCTACCCTGCCTGCTCCTGCTCCTGC------CGCCACGCAGACGGTGGCTGCTCCTTCCGGCGGAGTCGT
CCCTCGCAAAAGTTGCAATGCCGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCGTGGTGGGAGAAGACCTTCT
CCTTCCCGCGTCAAGGTGGGAATGGGAATGGGAATGGCGGCACACAGCCCCTCCTCGCCTTCCGCTTCGTCTTCGTCGCC
GGCAAACTGCAGCTTCAGGAACAAGACCACCTCAGCA------CTGTCCCTGAATTCGTCGGCGTCCACGGCCAAACCCA
GGTACCTGAA-AACTCCCCTCTGTTTTAGACAAGCTCTG-----TTTCTGCAACTGTATTCCATTCCA------------
-----GAGAGAAAAAAAAACTGTGTTTTCTGCAAGT----------------------GTGCTGGCTAGTCAAATAGACC
G------------------------------------------------TACTACTCCAGTGAACATAATGTAAGTATAT
TAGTATCAATGTAT---------------CATTGTGTAGCTGTATTGGATAG---------ATGTTGCTTGGTTCTCATG
TTTATGGATTGACACCTCATATACTGTACTACATCTTCAACATAAGTACATATCATCTCAACAGTACACTTGTCAGCTTC
TGATGTTGGTCAGTACAGTTCTGATGCACAATGTTGGTTACGATGTTTATGGATTGACCACAT----ATGATGATTAGTA
TACATACA-----AATGTTGGTACACAACACAATAGACTG--------TACATGCTCTAGTACTAATCATCTCAACACTA
CACTTGCCATGTCTAATTATGATGTCCAAGTACTCTACTGTTGCTGATGATC---AGTACTAGAACTAGAGCAATAATAC
ATCTGCAACCAAGAGTTTCCATTGAAATGAAATG------ACCTGACAGCAAAGAGTAAACTAACTGTTGCTAAGTGGCG
GCTAGTCCTGTTATGTGTCTAT-----------------GTCTTGTGCATCATACCGTTGTACGCATATGCTTGCTTGCT
AGTGAATAACCCG-----GGGAATTACTTTTACTTGGTGCACAATCTTCGCTTGTTGCAATTTGCGAATG-----CCATG
CCCGCGTTATGGATTC--TCAGAACCTATAATAACATAGAGTTTTTGTTTCT--TTTTGCTGTGGACAATTGTTTGTTTC
AGAAGATAAGCTGCGTGGTGACTGAGCCACTTGGTCAGGTGAAAGGCAGCATGCTTGGTGGAGGAAGCCCTGTTGCTCAG
CAGGGGTAAATTAACTACACAGGCTGCATAGCA-------------TGCTGCTGCTGATGATGATGATGATGGCGAACAA
ATTAGTACTAGTATGGTAGCTAA----GAAGT-------TGATGATGACTTGGATCGATGATGATGACGAAAATGGTGTG
GTGAATA--CTTTCTACTTACTCTGATCCATGTAAGTGGAGTGGTATTACTTAATTAGTAGCTAGGCAATGGAGTA-TGA
ACATGTATGTATGGGTGAGCAGTGGTACTCGTTAATTCCAT----CTTGCTAGCT-----AGTATGAGTGTGGTGCTTGA
AAAAAATA------------------------------------------------------------------------
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>chr4A_732
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-----------ATCCACCCATGATATCTGTGGGAGGTTGGTGTGTGTAATAAGTTTGGGATTTGTTTGTTTC----AATC
AAATGCCCACCCACGCCACGCAAGG-AAGCAAGGAAGCAAACCGTCCGTCCCTATCCATCCATCC--TCTTCTTCTTCTT
CTC-----------------CTCTGCTTTGCTTCAATGCCAAGCCATCCTCGGATCGCTTCTCTCCTCTCCTCTCCTCTC
GCCGGCGACGACTCTCCGTTCTTCACCCCGCGCAGGTAAGACA------------TCTTTGTCGTGGCTCTT-----GTT
TCTTGTGCTCGCTCATGGATCCATCCATGGATTCCATGTACTAGTCCTCTTG--------------TGTATAATCTGACT
GCAGGAAGAAGAAGGAGAAAGAAAGAAAGAAAATGGCGGACAGCGGCGGCGGCGGCGACTGGGAGGTGGTGTCGCTCACG
GCCTCCACCTACGCCGCCGCGCCGGGACCAATCCAAGTCTCGCCCCTCCTCCACGCCGCCCACAAAACAGCAGAGTCGCC
TCTTCTTCTCCTCCCAAATCCTCCTGCTCCCCCTGCACATTTCTTCATGTCCCAGCACTTCAATCTGCCACCGCTTTTTA
CTAGTACCCATCCTGGGAATAATAAGGGAGGCCAAGAATTACAAGAATCCGGCCCTGCCG------TGCCGGACGGT---
GATGCTTCCGATGATGCCGACGGTCTCAACATGCCCATCAGCCCAGAAAACTACTGCCACAGCGAGAGCGAGAGGGAGGA
TGTGCTGCTTCTTGCTAGTCCCGCCGGCAATGGCCTTGGCCTGCAGGTGGAAGGAGGAGGTGATC------AACTGCAGC
CAACCACCACGCCCTGCTCTCTTCCT---GACGTTGCTGCAGGTTCAGATGCTGCTGCTCCT------------------
---------------------------------------------------------GCTCCTGCTTCCGGCGGAGTCGC
TG------------GCAATGCT------------------------GCTCAGGCTCAG----------------------
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----------------------GTTTTTCTTAGACCTACTCTGCTTTCTGCAACTGTATTCAGTTCCAGAGAGGAAAAAA
GCTCTG------------------TTTTCTGCAAGTGAGGCCGACATCTCATCTGTGTC---------------------
-GACCGTAATACATCATA--------------------------------------------------------------
----------------------------------------TAGAAACATCATGACCAACATATGTTGCTTGGTTCTCATG
TTTATGGATTGACACCTC-----CTATACTACATCTGCAACATA--TACATATCATCTCAACACTACAGTTCTCAACTTG
TGATGTTGTTCAGTACAGTTGTGATGCACAATGTTGGTTCTGATGTTTATGGATTCACCAACATATGATGCTGATTGGTA
CACAATGATGCACAATGTTGGTACACAACACAATAGCACAATAGACACTACATGCTCTGCTACTAATCATCTCAACACTA
CACTTCTCATGT----TTATGATGCCCAAGTACTCTACTGTTGCTGCTGGTGATTAGTACTAGCACTAGAGCAATAATAC
ATCTGCAACCAAGAG-TTCCATTGAAATGAAAATGACCTCACCTGACAATAAAGAGCAAACTGACTGTTGGTAATGGATC
AGCAAATCAAGAGCAAACTAACTGTTGGTAATTGAAAAGGTCTGCTGTATCATACCGCTTTATGTATATGCTTGCTTG--
--TGAATAACCTCTGGTTGGGAATTACTTCTACTTGGTGCACAACCTTTGCTTGTTGCAATTTGCGAAGAATGCCCCGTG
CACCTGT----TATGAATTCAGAACCTATAATAACATCAGTTTTTC----------TTGCTGCGGAAAAAAATA--TTTC
AGAAGATAGGTTGCGCGGCAACTGAGCCACTTGGTCAGGCGAAGGTCAGCATGCTTGGTGGAGGAGGCCCTGTTTCTCAG
CAGGGGTAAATTAACTAAACAAGCTGCGTAGTA-------------TGCTGCTGCTGATGATGATGATGATGGCGAAAAA
CT------TAGTATGGTAGCTAAGTAAGAAGT-------TGATGATGACTTGGATCGATGATGATGACGAAAAGGGTGTG
GTGAATA--CTTTCTACTTACTCTGATCCATGTAAGTGGAGTGGTATTACTTAATTAGTAGCTAGGCAATGGAGTAATGA
ACATGTGTGTATGGGTGAGCAGTGGTGCTGGTTAATTCCAT----CTTGCTAACT-----AGTGTGAGTGTGGTGCTTGT
AAAATA--AAGTGTTGTGTTTAAGCAAGCAGAGACTGATATTTCTTGTTAGAAGATGATTAA------------------
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>chr7B_3124
CCTCT---------------------------------------------------------------------------
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----------------------------------------------------------CCCCCCCTCTCGCGACCGCGTC
GCACCCA------GCGCCTCCTCCCCGAGCCACCCCCCTTTCCCTCCCTCCTCGCCGCTGTCGCTGGCATCCGA---CGC
TGGCGGCAGTGGCTGCTAGCCATTCCCCTCTCGGGTCGCGCTAACGCGAGGCGGTGCGGCGCCGGGGGGGGGGGGGGCTT
CTAGGCGGCGGTGGGGCTCTTCGGCGTGGTGGCGGGCGATCTACTGGGCGGCGGCGTTGCCGTTGGCAGCTGGTGACGCG
GCGACGCGATCT-----------------------------------GGCCCTATCTGGGTCTGGACGGGCCGGCGGCGG
GGTGGGTCATCGGCATGGCTTCCGGGAAGCAGGGGGGAAGCGATG----------GCGGGTGGATGCTGGCTGCGCTGGT
GCTGTCCTGCTGCAGCATGGCCAAC-GAGACTTTGCGACCCCGATTTGGGCCTGGCTGGGCTAGGGCTGGCCTGGTATGC
CCTACTGCCGCGACCGGATGGCGACCGCGAAGGTGCCGGAGGCACGGGCCTCCCGCACAATGGCGGTGGAGGTAGTTCCC
TCCCGCGCAGCTCCGGTGCTACTGCTCCCATCGCCTGGTGCGTCTCTGTCCATCCTCTTGGCCTCGTGATGATGATCTCA
GTGAGGCGGTGTTGGTGGCGTCAAGACCGCGGTGGCGCATGCTGGTGGGCGGC
>chr2A_3208
CGGGC---------------------------------------------------------------------------
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---------------------------------------------------------------------------AGCGC
TGGTGGCGGTGCCCCTGGCCT-TTCCCCTCTCGGGTCGCACTAACGCAGGGCAGTGCGGCGCCGC------GGGGTGCTC
CTAGGCGGCGGCAGGGCTCTCCGGCATGGTAGCGGGCGATCTATTGGACGGCAGTGCTGCCGTTGGTGGTAG-------G
GCGACACGATCTGGCGGCGCCCACTTGGCCCAGATCGGGGCCCTTCAGGCCTCATCTCAGTTTGGGCGGGCCGACGGCTA
AGAGGGTCGTCGGCGTGGCTTCCGGGAGGCAAGGGAGCGAGGATGGGTGGGTGGTG---------GCTGGTGGCGCTGGC
GCCGCCCTGCTGCAGTGTGGCCACC-G-GGCTTTACGGGCCTGATTTGGGCCTGGCCGGGCCAGGGGTGGCCTGGTATGC
CCTGCTGCTGTGTCCCGTTGGCGGCCGCGACGGTGCTGGAGACTCGAGCCTCCCGCGCGACGGTGGTGGAGGTAGTTCCC
TCCCACGTGTCTCCGATGCTGCTGCT-CCGTCGCCTCGTGCGTCTCTCTCCATCCACTTGGTCTCGTGGTGGTGATCTCA
GTGAGGCAGCGTGGGTCGCGTCAAGACCGCGGTGGCGCATGCTGGTGGGCGGC
>chr2D_3242
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----------------------TT--CCTCTCGGGCCGCGCTGATGCGGGGCGGTGCGGCGTTGC------GGGGTGCTC
GTAGGCGGCAGCGGGGCCCTCCGGCCTAGTGGCAGGCGATCTACTAGGCGATGG-----------------GGTGACGCG
GCGGCGTTATCTAGCAACGCCCGCTCGGCCCAGATCTGGGCCCTTTGGGTCCCATCTGGGTCTAGGCAGGCCGGCGGCGG
GGAGGGTCCTCGGCATGGTTTCCGAAAGGCGGGGGGCGGCGATAG----------GCGGGTGGTTGCTGGCGGCGCTGGT
GCCGCCCTGCTGCAGCGTGGCCGGTGG-GGCTTTGCGGGCCGGATTTGGGCCTGGCAGGGCCAGGGGTGGCCTGGTATGC
CCTACTGCTACGTCTGAATGGCAACCACTACGGTGCAGGAGGCACGGGCCTCCCACACGATGGCAGTGGAGGTAATTCCC
TCCCGCGTGGCTTCGGTGCTGCTGCTCTCGTCGCCTGATGCGTCTCTCTCCATCCTCTTGGCCTCGTGGTGGTGATCTCA
GTTAGGCGGCATGGGTGGCGTCAAGACCACGGTGGCGCATGCTGGTGGGCGGC
>SNPs
S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S-------
----------------S-------S-SS------------------------------S---------------------
-------------------S-S-S-S---S----------------------------SSSSS-SSS-------------
----------------------------------------------------------------------S---------
-----------------------S-------S------S-SS-SSSSS---------------S-S------SSSSS---
--------S-SSSS--------------------S--------S-------------------------S----------
--------S-S---------SS-------------------S--------------------------------------
--------------S---S-S-----S---------S-----S--------------------------S----------
------------------------------------------------------------------S-------------
---S------------------S--S---S-------SS---------------------SSSSSS-----------SSS
-------------------------------S----S-----------------------S-S--------------S--
-----------------------------------SSSS------------------------SSSS-------------
S----------S--------------SSS--------------------------------------S-SSSSSSSSSSS
SSSSSSS----------------------------SSSSSS-------SS---------------------------S-S
----S---------------------------------------------------------------------------
---------------S-----S----------------------------------------------------------
---------------------S-S------------SSSSSSS-------------------------------------
------SSSSS---------------------------------------------------------------------
---------------------------------------------------------S--S--S-----S--------SS
S----------SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SSSS-----S-SS--S-SSSS-----
--S-S-SS-SSSSSSSSSSSSSSSSSSSS----------S--------------SS------SSSSSSS--S-SSSSS-S
S-S-SSSS----SSS-SSS-SSSSS-SSS-S--SSSSSSS-SSSSS-SSS-SSSS-SSS-SS---SSSSSSSSSS-SSS-
S-SSSS-S--------------------------------------SSSS------------------------------
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-----------------------------------------------------------------S--------------
----------S------------------SS---------------S--S--SS--------------------------
--------------S-------------S----S------S---------------------------------------
------------------SS-SS-SSSS-SSSSSSSSSSSSSSSSS--------S-------------------------
SS--------------------------S---SSSSSSS-----------------------------------------
------SSS------------------------S------------S---------------------------------
S--------------------S-S--S-----------S--SSSS----------SSSSS--S---S-S-----------
--------------------------------S-----------------S-----S-S---SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SSS----S---------
--S---SSSSSSS------------S--S-----------------------S-----S---SSSS-SSSSSSSS---S-
S--------SS-----------------S---S--------------------------S--------------------
--------------S---S---------------S-S-----------S-------------------------------
------------------------------S--------------------------------S----------------
------------------------------------------S-------------------------S----S------
---------------------------S--------------S----------------------S-----S--------
----S--------S----S-SSS-------S-----------------------S-------------------------
----------------------S-----------------S-----------------------S---S-----------
------S-------------------S--------S-----------------
>forward_47
---------------------------CACCGGCTCCACTCTTGATT---------------------------------
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>reverse_1035
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--------------------------------------------------------------------------TTGGTT
TCTTGTGCGCATGG------------------------------------------------------------------
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>forward_427
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-------GAGGAACTTGCGAGGCTCTT-----------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>reverse_1675
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACTGCT
GTCGGTTCTGCTAC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>forward_1054
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTGGTT
TCTTGTGCGCATGG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>reverse_3001
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CAAGGTCAGCATGCTTGGTG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>forward_2010
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GCCAAACCCA
GGTACCAACT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>reverse_3661
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------ATGCCAATGGAACGGGTCAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
